HHsearch alignment for GI: 254781043 and conserved domain: TIGR00551

>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=999.96  Aligned_cols=510  Identities=38%  Similarity=0.572  Sum_probs=454.8

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCHHCCCCEEEECCCCCCC-CHHHHHHHHHHHCCCCCCHH
Q ss_conf             3105889899689999999999889829999868-988521041165342513789999-99999998998458877999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKV-FPTRSHTVAAQGGIAASLANMTPD-SWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~-~~~~g~s~~A~GGi~a~~~~~~~D-s~~~~~~Dt~~~g~~l~d~~   93 (611)
T Consensus         1 ~~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~--DdSi~~Hv~DTL~AGaG~cD~~   78 (546)
T TIGR00551         1 SEADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAET--DDSIDAHVEDTLAAGAGLCDEE   78 (546)
T ss_pred             CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCC--CCCHHHHHHHHHHHCCCCCCHH
T ss_conf             96359997520899999985332686378975875555675200011266303875--5856877899998446788688


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CEEEECCCCCCCCCCCCCCCCEEEEEC-CCCCHHHHHHHHHHHH-HC
Q ss_conf             99999998899999999869981327998----551001464114567876564079866-6542667899999987-31
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAG----KIYQRPFGGHMQNYGEGPPVQRTCAAA-DRTGHAILHTLYGQAL-KN  167 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G----~~~~~~~gg~~~~~~~g~~~~R~~~~~-d~tG~~i~~~L~~~~~-~~  167 (611)
T Consensus        79 aV~~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS--------~~RI~HA~GDaTGr~~~~~L~~~a~~~p  150 (546)
T TIGR00551        79 AVEFVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHS--------YRRILHAAGDATGREVISTLLKKARSEP  150 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCC--------CCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999853689999998669220267798874431001335667--------7742773576324899999999974377


Q ss_pred             CCEEECCCEEEEEEEC------CCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHC
Q ss_conf             2303113156520001------3443012468980587089950672474157656543342106401444887887513
Q gi|254781043|r  168 NAEFFIEYFALDLIIN------SEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAG  241 (611)
Q Consensus       168 gv~i~~~~~~~~Li~d------~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aG  241 (611)
T Consensus       151 ~~~~~~~~~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g~ly~~TTNp~~stGDGIala~raG  230 (546)
T TIGR00551       151 NVEIIEGEVALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLGKLYSFTTNPKVSTGDGIALAWRAG  230 (546)
T ss_pred             CEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf             62410121444444225024798887999999716787237763010003207732100312388742314689998728


Q ss_pred             CCCCCCCCCCCCCCCCCC-----CEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCC
Q ss_conf             653333222328884422-----014304566557808983268612554076510047520111568899881788888
Q gi|254781043|r  242 LPLQDMEFVQFHPTGIYG-----AGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGK  316 (611)
Q Consensus       242 a~l~~mEf~qfhPt~~~~-----~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~  316 (611)
T Consensus       231 ~~v~DLEF~QFHPT~L~~~~~GG~~~LitEAvRGEGA~Lvd~~G~Rf~~~~hp~-GeLAPRDiVaRAI~~~m~~~~~-dP  308 (546)
T TIGR00551       231 VEVRDLEFVQFHPTALVKPRVGGRYFLITEAVRGEGAILVDRDGKRFMADVHPR-GELAPRDIVARAIDEEMKKGGK-DP  308 (546)
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCC-CC
T ss_conf             722046342567211137887898764001100387423558886702677888-8767404889999999972287-93


Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEC
Q ss_conf             88746886111798999998537999997643678654406752033100123421577158537788853322760340
Q gi|254781043|r  317 SKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAI  396 (611)
Q Consensus       317 ~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAa  396 (611)
T Consensus       309 tqacVfLD~s~Ie~~~f~~RFP~I~~~c~~-~GID~~~~~IPv~P~AHY~~GGi~vD~~g~----------T~~~GLYAi  377 (546)
T TIGR00551       309 TQACVFLDASGIEDDFFKSRFPTITAKCRG-AGIDIVREPIPVVPAAHYTMGGISVDAYGR----------TTVPGLYAI  377 (546)
T ss_pred             CEEEEEEECCCCCHHHHHCCCCHHHHHHHH-CCCCCCCCCCCCCCCCCEEECCEEECCCCE----------ECCCCEEEE
T ss_conf             406888743588834652127278999985-788755587154466715736788757633----------213430120


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHCCCCCC-CCCCHHHHHHHH
Q ss_conf             2122033566430476432222223215677556654202--6566764002357888631010378-871368999878
Q gi|254781043|r  397 GEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS--SPIPSLDISSCDRIMDRFDRLRHAD-GHVPTAALREKM  473 (611)
Q Consensus       397 Ge~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~i~~~L  473 (611)
T Consensus       378 GE~A~tGlHGANRLASNSLLEclV~G~~aa~~i~~~~~~~Grs~~-~~~--~---~~~e~-~~~~~~~d~~~Lq~~~~~~  450 (546)
T TIGR00551       378 GEVACTGLHGANRLASNSLLECLVFGLRAARAISRKPPAAGRSDE-SSS--A---LWDEP-RSETPDIDRAELQHKMSEL  450 (546)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HCC--C---CCCCC-EEECCCCCHHHHHHHHHHH
T ss_conf             024306651146777787889987328999998653553366510-026--6---65541-3423775145664576688


Q ss_pred             HHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCC-------CC------CCCCCCCCHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             8766509726875899999999999999998415-------15------7877545889999-99888899999999999
Q gi|254781043|r  474 QRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADL-------KV------HDRSLIWNSDLVE-TLELQNLMINAIATVYS  539 (611)
Q Consensus       474 q~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i-------~~------~d~~~~~n~el~~-~~el~~~l~~Ae~~~~a  539 (611)
T Consensus       451 ~~~~w~~aGi~R~~~~L~~a~~~~~~~~~~~~~~ssskl~AHlPedq~~S~~GPGln-efmql~~El~~L~~vA~l~~~s  529 (546)
T TIGR00551       451 RSLLWEAAGIVRLSESLEEALRKLVEVQEEVDELSSSKLLAHLPEDQKVSLSGPGLN-EFMQLLLELRNLLQVAKLVTIS  529 (546)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999997401445578987877899999999987544444212763341326788778-9999999999899999999999


Q ss_pred             HHCCCCCCCCEECCCCC
Q ss_conf             96262550462353377
Q gi|254781043|r  540 AEARKESRGSHAREDFK  556 (611)
Q Consensus       540 al~R~ESRG~H~R~DyP  556 (611)
T Consensus       530 AL~R~ESRG~H~R~DyP  546 (546)
T TIGR00551       530 ALLREESRGAHYRLDYP  546 (546)
T ss_pred             HHCCCCCCCCCCCCCCC
T ss_conf             75043346765457889