HHsearch alignment for GI: 254781043 and conserved domain: TIGR01350

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=99.20  E-value=4.8e-11  Score=90.81  Aligned_cols=143  Identities=24%  Similarity=0.308  Sum_probs=75.8

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
T Consensus         1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lG--GtCLN~G--------CIP-t-------------------KaL   50 (481)
T TIGR01350         1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLG--GTCLNVG--------CIP-T-------------------KAL   50 (481)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC--CEEECCC--------CCC-C-------------------HHH
T ss_conf             951899877877279999998649808999803568--7487277--------675-4-------------------788


Q ss_pred             HHHHHHHHHHHH-HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH----HHHHHCCCEE
Q ss_conf             999988999999-99869981327998551001464114567876564079866654266789999----9987312303
Q gi|254781043|r   97 YLAMEAPQSVYE-LEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY----GQALKNNAEF  171 (611)
Q Consensus        97 ~~~~~a~~~i~~-Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~----~~~~~~gv~i  171 (611)
T Consensus        51 L~~ae~~~~~~h~a~~~Gi~~~-~-~v~~d~~~----~------~~rK----------~~VV~~L~~Gv~~LlkknKv~v  108 (481)
T TIGR01350        51 LHSAEVYDEIKHKAKDLGIEVE-N-NVSVDWEK----M------QERK----------NKVVKKLVGGVKGLLKKNKVTV  108 (481)
T ss_pred             HHHHHHHHHHHHHHHHCCEEEC-C-EEEECHHH----H------HHHH----------HHHHHHHHHHHHHHHHHCCEEE
T ss_conf             7766789999988986780336-7-12675899----9------9998----------8987542467898863068059


Q ss_pred             ECCCEEEEEEECCCCCCEEEEEEEECCCE-EEEECCCCEEEECCCCCCC
Q ss_conf             11315652000134430124689805870-8995067247415765654
Q gi|254781043|r  172 FIEYFALDLIINSEGCCVGVVAWQLETGE-IHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~-~~~i~AkaVILATGG~~~l  219 (611)
T Consensus       109 ~~G~a~---~~~-~~~v----~V~~~~~~~~~~~~~k~~iiATGS~P~~  149 (481)
T TIGR01350       109 IKGEAK---FLD-PNTV----SVTGENGEEEETLEAKNIIIATGSRPRE  149 (481)
T ss_pred             EEEEEE---EEC-CCEE----EEECCCCCEEEEEEEEEEEEECCCCCCC
T ss_conf             999999---985-8589----9835655311478740379933860343