HHsearch alignment for GI: 254781043 and conserved domain: TIGR01350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=99.20 E-value=4.8e-11 Score=90.81 Aligned_cols=143 Identities=24% Similarity=0.308 Sum_probs=75.8
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lG--GtCLN~G--------CIP-t-------------------KaL 50 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLG--GTCLNVG--------CIP-T-------------------KAL 50 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC--CEEECCC--------CCC-C-------------------HHH
T ss_conf 951899877877279999998649808999803568--7487277--------675-4-------------------788
Q ss_pred HHHHHHHHHHHH-HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH----HHHHHCCCEE
Q ss_conf 999988999999-99869981327998551001464114567876564079866654266789999----9987312303
Q gi|254781043|r 97 YLAMEAPQSVYE-LEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY----GQALKNNAEF 171 (611)
Q Consensus 97 ~~~~~a~~~i~~-Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~----~~~~~~gv~i 171 (611)
T Consensus 51 L~~ae~~~~~~h~a~~~Gi~~~-~-~v~~d~~~----~------~~rK----------~~VV~~L~~Gv~~LlkknKv~v 108 (481)
T TIGR01350 51 LHSAEVYDEIKHKAKDLGIEVE-N-NVSVDWEK----M------QERK----------NKVVKKLVGGVKGLLKKNKVTV 108 (481)
T ss_pred HHHHHHHHHHHHHHHHCCEEEC-C-EEEECHHH----H------HHHH----------HHHHHHHHHHHHHHHHHCCEEE
T ss_conf 7766789999988986780336-7-12675899----9------9998----------8987542467898863068059
Q ss_pred ECCCEEEEEEECCCCCCEEEEEEEECCCE-EEEECCCCEEEECCCCCCC
Q ss_conf 11315652000134430124689805870-8995067247415765654
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVVAWQLETGE-IHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~-~~~i~AkaVILATGG~~~l 219 (611)
T Consensus 109 ~~G~a~---~~~-~~~v----~V~~~~~~~~~~~~~k~~iiATGS~P~~ 149 (481)
T TIGR01350 109 IKGEAK---FLD-PNTV----SVTGENGEEEETLEAKNIIIATGSRPRE 149 (481)
T ss_pred EEEEEE---EEC-CCEE----EEECCCCCEEEEEEEEEEEEECCCCCCC
T ss_conf 999999---985-8589----9835655311478740379933860343