HHsearch alignment for GI: 254781043 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.54 E-value=1.5e-13 Score=107.22 Aligned_cols=52 Identities=31% Similarity=0.450 Sum_probs=43.9
Q ss_pred CCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCC
Q ss_conf 3441332310588989968999999999988982999986898852104116
Q gi|254781043|r 9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ 60 (611)
Q Consensus 9 ~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~ 60 (611)
T Consensus 168 d~Yd~~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~ 219 (1026)
T TIGR01372 168 DTYDKVNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEA 219 (1026)
T ss_pred HHHCCEEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 3130342320478878896799999999647988999706765777556778