HHsearch alignment for GI: 254781043 and conserved domain: TIGR01811
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=100.00 E-value=0 Score=933.48 Aligned_cols=564 Identities=30% Similarity=0.438 Sum_probs=519.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8898996899999999998898299998689-88521041165342513-789999999999989984588779999999
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASL-ANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~-~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v~r 80 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNVKR 80 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHHHH
T ss_conf 96855653478999999864885125440588762000000266200256567888416653140323533677752789
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH---CC-CEEEC
Q ss_conf 999889999999986998132799855100146411456787656407986665426678999999873---12-30311
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK---NN-AEFFI 173 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~---~g-v~i~~ 173 (611)
T Consensus 81 la~~s~~iId~~~a~GvpFaRe~gGlLd~RsFGG~q--------vsRT~Yarg~TGQQLl~~~~~a~~r~~~~G~v~~y~ 152 (620)
T TIGR01811 81 LAEISPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ--------VSRTFYARGQTGQQLLLAADSALRRQIAAGTVEKYE 152 (620)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE--------EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 987308999998645884345546630013468600--------012134177627899999999998888627356641
Q ss_pred CCEEEEEEECCCC---CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 3156520001344---3012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 174 EYFALDLIINSEG---CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 174 ~~~~~~Li~d~dG---~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
T Consensus 153 ~~e~ld~iv~d~~gek~arGi~arnL~Tge~~~~~adAVilAtGGyg~vF~~sTna~~sna~A~~~~Y~~Ga~fAnp~Fi 232 (620)
T TIGR01811 153 RWEMLDIIVVDGDGEKRARGIIARNLVTGEIETFSADAVILATGGYGNVFYLSTNAMNSNASAAWRAYEQGAYFANPEFI 232 (620)
T ss_pred CCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCEE
T ss_conf 65168898875887502200121024000000003566898128860222212103442157999998679146367135
Q ss_pred CCCCCCCCCCE------EECCCCCCCCC-EEEEEC-------------------CCC--CCCCCCCCCCCCCCCCCEEHH
Q ss_conf 32888442201------43045665578-089832-------------------686--125540765100475201115
Q gi|254781043|r 251 QFHPTGIYGAG------CLITEGARGEG-GYLVNS-------------------KGE--RFMERYAPSAKDLASRDVVSR 302 (611)
Q Consensus 251 qfhPt~~~~~~------~l~~~~~rg~G-~~l~n~-------------------~Ge--rf~~~y~~~~~el~~rd~~s~ 302 (611)
T Consensus 233 QiHPT~iP~~~~~QsKl~LMSESlRndGGRiW~pK~~~D~~~~~~~~lrp~~I~e~~rdYfLEr~YP~fGNLVPRDiAsR 312 (620)
T TIGR01811 233 QIHPTAIPVDGEFQSKLTLMSESLRNDGGRIWVPKEKNDDRDANQKKLRPEKIPEDKRDYFLERRYPAFGNLVPRDIASR 312 (620)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHH
T ss_conf 54672238888622257777465326986472468887431125422564458888885102200777778862247779
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 6889988178888888746886111----798999998537999997643678654406752033100123421577158
Q gi|254781043|r 303 CMMMEIREGRGVGKSKDHIHLYLNH----LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEV 378 (611)
Q Consensus 303 ai~~ei~~g~g~~~~~~~v~ld~~~----~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v 378 (611)
T Consensus 313 ~i~~~c~~~~gvg~~~~~vYLDf~d~~~RlG~~~~~~kygnl~~~Y~~~~gddPy~~PM~I~PavHYtMGGLwvDYd--- 389 (620)
T TIGR01811 313 AIKEVCDAGKGVGPGENAVYLDFSDAIERLGRKEIDAKYGNLFEMYEKITGDDPYKVPMRIYPAVHYTMGGLWVDYD--- 389 (620)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEHHHCCHHCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCEEECCCEEEEHH---
T ss_conf 99998864037655443135014430021057889877242888999972687798985126852221685044120---
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCC------CHHHHHHH
Q ss_conf 5377888533227603402122033566430476432222223215677556654202656-6764------00235788
Q gi|254781043|r 379 LDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPI-PSLD------ISSCDRIM 451 (611)
Q Consensus 379 ~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~-~~~~------~~~~~~~~ 451 (611)
T Consensus 390 -------~mT~~pGLFa~GEc~-fs~HGANRLGAnsLl~a~~dG~~~lP~ti~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 461 (620)
T TIGR01811 390 -------LMTTVPGLFAAGECD-FSDHGANRLGANSLLSALADGYFVLPATIENYLGLELSSEDLDEDAPEFEEALAEEQ 461 (620)
T ss_pred -------CCCCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf -------036887513530167-122453155699998863497576302577553024577767644408999999899
Q ss_pred HHHHCCCCCC----CC--CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHH
Q ss_conf 8631010378----87--1368999878876650972687589999999999999999841-515787754588999999
Q gi|254781043|r 452 DRFDRLRHAD----GH--VPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMAD-LKVHDRSLIWNSDLVETL 524 (611)
Q Consensus 452 ~~~~~~~~~~----g~--~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~-i~~~d~~~~~n~el~~~~ 524 (611)
T Consensus 462 ~r~d~L~~~~pewvG~~v~~~~~~Hr~LG~~m~~~~gv~R~~~~L~~~~~kI~~L~~~f~~~i~i~gt~~e~Nq~l~~a~ 541 (620)
T TIGR01811 462 DRLDRLLKMDPEWVGDNVENADKFHRELGEIMWENCGVSRNNEKLLKALEKIEELREEFWKNIDIPGTTKESNQELEFAR 541 (620)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88888861583205654466678999987887661213661134788999999999998703756887101114678999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC-CCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 88889999999999996262550462353377887-66688032135699998468980599994474442567550000
Q gi|254781043|r 525 ELQNLMINAIATVYSAEARKESRGSHAREDFKDGE-FGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSK 603 (611)
Q Consensus 525 el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~-~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~ 603 (611)
T Consensus 542 r~~d~l~La~l~~~dAl~R~EScGaHfr~e~~~~DgEA~R~Deef~~~~~w~f~G~~~~p~~~~e~l---------~~e~ 612 (620)
T TIGR01811 542 RVADYLELAELMCLDALNRNESCGAHFREEFQTPDGEAERNDEEFLYVAAWEFKGENDAPELHYEEL---------DFEL 612 (620)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCEEECCE---------EEEE
T ss_conf 9998986305310003367656788678666878742244730121110113378898840421553---------6876
Q ss_pred CCCCCCCC
Q ss_conf 27721679
Q gi|254781043|r 604 IAPKARVY 611 (611)
Q Consensus 604 ~~p~~R~Y 611 (611)
T Consensus 613 v~p~~R~Y 620 (620)
T TIGR01811 613 VPPRKRDY 620 (620)
T ss_pred ECCCCCCC
T ss_conf 26766899