HHsearch alignment for GI: 254781043 and conserved domain: TIGR01811

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=100.00  E-value=0  Score=933.48  Aligned_cols=564  Identities=30%  Similarity=0.438  Sum_probs=519.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             8898996899999999998898299998689-88521041165342513-789999999999989984588779999999
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASL-ANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~-~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
T Consensus         1 viVVGtGLaG~~A~~~lae~G~~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v~r   80 (620)
T TIGR01811         1 VIVVGTGLAGGSAAAKLAELGYHVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNVKR   80 (620)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHHHH
T ss_conf             96855653478999999864885125440588762000000266200256567888416653140323533677752789


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH---CC-CEEEC
Q ss_conf             999889999999986998132799855100146411456787656407986665426678999999873---12-30311
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK---NN-AEFFI  173 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~---~g-v~i~~  173 (611)
T Consensus        81 la~~s~~iId~~~a~GvpFaRe~gGlLd~RsFGG~q--------vsRT~Yarg~TGQQLl~~~~~a~~r~~~~G~v~~y~  152 (620)
T TIGR01811        81 LAEISPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ--------VSRTFYARGQTGQQLLLAADSALRRQIAAGTVEKYE  152 (620)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE--------EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             987308999998645884345546630013468600--------012134177627899999999998888627356641


Q ss_pred             CCEEEEEEECCCC---CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf             3156520001344---3012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r  174 EYFALDLIINSEG---CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV  250 (611)
Q Consensus       174 ~~~~~~Li~d~dG---~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~  250 (611)
T Consensus       153 ~~e~ld~iv~d~~gek~arGi~arnL~Tge~~~~~adAVilAtGGyg~vF~~sTna~~sna~A~~~~Y~~Ga~fAnp~Fi  232 (620)
T TIGR01811       153 RWEMLDIIVVDGDGEKRARGIIARNLVTGEIETFSADAVILATGGYGNVFYLSTNAMNSNASAAWRAYEQGAYFANPEFI  232 (620)
T ss_pred             CCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCEE
T ss_conf             65168898875887502200121024000000003566898128860222212103442157999998679146367135


Q ss_pred             CCCCCCCCCCE------EECCCCCCCCC-EEEEEC-------------------CCC--CCCCCCCCCCCCCCCCCEEHH
Q ss_conf             32888442201------43045665578-089832-------------------686--125540765100475201115
Q gi|254781043|r  251 QFHPTGIYGAG------CLITEGARGEG-GYLVNS-------------------KGE--RFMERYAPSAKDLASRDVVSR  302 (611)
Q Consensus       251 qfhPt~~~~~~------~l~~~~~rg~G-~~l~n~-------------------~Ge--rf~~~y~~~~~el~~rd~~s~  302 (611)
T Consensus       233 QiHPT~iP~~~~~QsKl~LMSESlRndGGRiW~pK~~~D~~~~~~~~lrp~~I~e~~rdYfLEr~YP~fGNLVPRDiAsR  312 (620)
T TIGR01811       233 QIHPTAIPVDGEFQSKLTLMSESLRNDGGRIWVPKEKNDDRDANQKKLRPEKIPEDKRDYFLERRYPAFGNLVPRDIASR  312 (620)
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHH
T ss_conf             54672238888622257777465326986472468887431125422564458888885102200777778862247779


Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEECC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf             6889988178888888746886111----798999998537999997643678654406752033100123421577158
Q gi|254781043|r  303 CMMMEIREGRGVGKSKDHIHLYLNH----LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEV  378 (611)
Q Consensus       303 ai~~ei~~g~g~~~~~~~v~ld~~~----~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v  378 (611)
T Consensus       313 ~i~~~c~~~~gvg~~~~~vYLDf~d~~~RlG~~~~~~kygnl~~~Y~~~~gddPy~~PM~I~PavHYtMGGLwvDYd---  389 (620)
T TIGR01811       313 AIKEVCDAGKGVGPGENAVYLDFSDAIERLGRKEIDAKYGNLFEMYEKITGDDPYKVPMRIYPAVHYTMGGLWVDYD---  389 (620)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEHHHCCHHCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCEEECCCEEEEHH---
T ss_conf             99998864037655443135014430021057889877242888999972687798985126852221685044120---


Q ss_pred             ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCC------CHHHHHHH
Q ss_conf             5377888533227603402122033566430476432222223215677556654202656-6764------00235788
Q gi|254781043|r  379 LDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPI-PSLD------ISSCDRIM  451 (611)
Q Consensus       379 ~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~-~~~~------~~~~~~~~  451 (611)
T Consensus       390 -------~mT~~pGLFa~GEc~-fs~HGANRLGAnsLl~a~~dG~~~lP~ti~~~~~~~~~~~~~~~~~P~~~~~~~~~~  461 (620)
T TIGR01811       390 -------LMTTVPGLFAAGECD-FSDHGANRLGANSLLSALADGYFVLPATIENYLGLELSSEDLDEDAPEFEEALAEEQ  461 (620)
T ss_pred             -------CCCCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             -------036887513530167-122453155699998863497576302577553024577767644408999999899


Q ss_pred             HHHHCCCCCC----CC--CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHH
Q ss_conf             8631010378----87--1368999878876650972687589999999999999999841-515787754588999999
Q gi|254781043|r  452 DRFDRLRHAD----GH--VPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMAD-LKVHDRSLIWNSDLVETL  524 (611)
Q Consensus       452 ~~~~~~~~~~----g~--~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~-i~~~d~~~~~n~el~~~~  524 (611)
T Consensus       462 ~r~d~L~~~~pewvG~~v~~~~~~Hr~LG~~m~~~~gv~R~~~~L~~~~~kI~~L~~~f~~~i~i~gt~~e~Nq~l~~a~  541 (620)
T TIGR01811       462 DRLDRLLKMDPEWVGDNVENADKFHRELGEIMWENCGVSRNNEKLLKALEKIEELREEFWKNIDIPGTTKESNQELEFAR  541 (620)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             88888861583205654466678999987887661213661134788999999999998703756887101114678999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC-CCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEE
Q ss_conf             88889999999999996262550462353377887-66688032135699998468980599994474442567550000
Q gi|254781043|r  525 ELQNLMINAIATVYSAEARKESRGSHAREDFKDGE-FGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSK  603 (611)
Q Consensus       525 el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~-~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~  603 (611)
T Consensus       542 r~~d~l~La~l~~~dAl~R~EScGaHfr~e~~~~DgEA~R~Deef~~~~~w~f~G~~~~p~~~~e~l---------~~e~  612 (620)
T TIGR01811       542 RVADYLELAELMCLDALNRNESCGAHFREEFQTPDGEAERNDEEFLYVAAWEFKGENDAPELHYEEL---------DFEL  612 (620)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCEEECCE---------EEEE
T ss_conf             9998986305310003367656788678666878742244730121110113378898840421553---------6876


Q ss_pred             CCCCCCCC
Q ss_conf             27721679
Q gi|254781043|r  604 IAPKARVY  611 (611)
Q Consensus       604 ~~p~~R~Y  611 (611)
T Consensus       613 v~p~~R~Y  620 (620)
T TIGR01811       613 VPPRKRDY  620 (620)
T ss_pred             ECCCCCCC
T ss_conf             26766899