HHsearch alignment for GI: 254781043 and conserved domain: TIGR01813

>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=100.00  E-value=0  Score=609.61  Aligned_cols=383  Identities=36%  Similarity=0.530  Sum_probs=317.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCHHCCCCEEEECCCCC-----CC-CHHHHHHHHHHHCCCCCC
Q ss_conf             5889899689999999999889-8299998689885210411653425137899-----99-999999989984588779
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTRSHTVAAQGGIAASLANMT-----PD-SWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-----~D-s~~~~~~Dt~~~g~~l~d   91 (611)
T Consensus         1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~   80 (487)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND   80 (487)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             96898427688999999986468763787057523226899772102356848885488899677889988863278887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECC--CCCHHHHHHHHHHHHHCC-
Q ss_conf             99999999988999999998699813279985510014641145678765640798666--542667899999987312-
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAAD--RTGHAILHTLYGQALKNN-  168 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d--~tG~~i~~~L~~~~~~~g-  168 (611)
T Consensus        81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~-----~~~~GGhs--------~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gs  147 (487)
T TIGR01813        81 PELVRTLAEESADAVDWLQDCGVGFRLDD-----LIQLGGHS--------VKRAHRPTGGAASGAEIVQKLSKKAKKEGS  147 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEECCH-----HHHCCCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             89999999878899887764221000111-----44327876--------464303478876784011777887743377


Q ss_pred             -----CEEECCCEEEEEEECCCCCCEEEEEEE-------ECCCEEEEECCCCEEEECCCCC-CC------C-------CC
Q ss_conf             -----303113156520001344301246898-------0587089950672474157656-54------3-------34
Q gi|254781043|r  169 -----AEFFIEYFALDLIINSEGCCVGVVAWQ-------LETGEIHRFSAKLVVLATGGYG-RA------Y-------FS  222 (611)
Q Consensus       169 -----v~i~~~~~~~~Li~d~dG~V~Gav~~~-------~~~G~~~~i~AkaVILATGG~~-~l------y-------~~  222 (611)
T Consensus       148 kDsnlv~~~~n~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~~~~y~P~L~~~~~  227 (487)
T TIGR01813       148 KDSNLVETRLNSKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKELIKKYDPELKGKLD  227 (487)
T ss_pred             CCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHHHCHHHCCCCC
T ss_conf             43211221006727999986971189999621225887777873267550606897576133338999861801167023


Q ss_pred             CCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------EEECCCCCCCCC---EEEEE-CCCCCCCCCCCCCC
Q ss_conf             21064014448878875136533332223288844220-------143045665578---08983-26861255407651
Q gi|254781043|r  223 ATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGA-------GCLITEGARGEG---GYLVN-SKGERFMERYAPSA  291 (611)
Q Consensus       223 ~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~-------~~l~~~~~rg~G---~~l~n-~~Gerf~~~y~~~~  291 (611)
T Consensus       228 sTN~~GaTGDg~~~a~~~GA~~vdm~~iQ~~Pt~~~d~gDrennW~~~~~~~~r~~GF~~aI~~n~~~G~RF~n------  301 (487)
T TIGR01813       228 STNQPGATGDGIKMAEKIGAALVDMDFIQAHPTASPDEGDRENNWGFLISEAVRGYGFAKAILINPKTGERFVN------  301 (487)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCEEECCEEECCCEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC------
T ss_conf             46899635799999998088745040474261442698751024465665667522552217732678850003------


Q ss_pred             CCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC---------CCC-----------------HHHHHHH--H------
Q ss_conf             00475201115688998817888888874688611---------179-----------------8999998--5------
Q gi|254781043|r  292 KDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN---------HLD-----------------PAVLQER--L------  337 (611)
Q Consensus       292 ~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~---------~~~-----------------~~~l~~~--~------  337 (611)
T Consensus       302 -El~~Rd~~s~aI~a~~~k~~gkPDn~A~l~~~~~~~~~a~~~~~~~Gelkeft~~g~~~K~ds~e~LAK~yD~~~~~~~  380 (487)
T TIGR01813       302 -ELATRDTVSDAILAQPGKSEGKPDNRAYLVFDEDVAKKAEEVENYLGELKEFTKDGVAYKGDSLEELAKQYDFNIPAAA  380 (487)
T ss_pred             -CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCHHH
T ss_conf             -4672568999998388878878885506880857876667777765467666314855430248999986167989899


Q ss_pred             -----HHHHHHHHHHC-CCCC------------C-CCE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CEE
Q ss_conf             -----37999997643-6786------------5-440---67520331001234215771585377888533227-603
Q gi|254781043|r  338 -----PGISESARIFA-GVDV------------T-RDP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAP-GLM  394 (611)
Q Consensus       338 -----~~~~~~~~~~~-g~D~------------~-~~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~-GLy  394 (611)
T Consensus       381 L~~~v~~yN~~v~--~Dg~D~~F~r~~d~~~d~~l~~PyY~~~~~P~vHhTMGGv~IntkaeVl~~~~~---~pI~nGLf  455 (487)
T TIGR01813       381 LKKTVKDYNEYVA--KDGKDTAFGRRNDMKDDLSLKAPYYAIKVTPKVHHTMGGVKINTKAEVLDENGE---KPIKNGLF  455 (487)
T ss_pred             HHHHHHHHHHHHH--CCCCCHHHCCCCCCHHHCEECCCEEEEEEECCEEEECCCEEECCCCHHHHHCCC---CCCCCCCE
T ss_conf             9999988731320--478871234678873220205888999963771575486367874055353589---66877646


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             402122033566430476432222223215677
Q gi|254781043|r  395 AIGEAGCASVHGANRLGSNSLIDLVVFGRAAVI  427 (611)
Q Consensus       395 AaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~  427 (611)
T Consensus       456 AAGEV-TGGvHG~nRLGGna~~d~~vFGr~Ag~  487 (487)
T TIGR01813       456 AAGEV-TGGVHGANRLGGNAIADCIVFGRIAGE  487 (487)
T ss_pred             EEEEE-ECCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             76773-067136621223467668761400269