HHsearch alignment for GI: 254781043 and conserved domain: TIGR01816

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=100.00  E-value=0  Score=1418.24  Aligned_cols=590  Identities=62%  Similarity=1.021  Sum_probs=579.5

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-CCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899-99999999989984588779999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-PDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
T Consensus         1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA   80 (615)
T TIGR01816         1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA   80 (615)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             94227988687568999998632792388983136886411223445788851778798863640310005652124689


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
T Consensus        81 iE~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~E  160 (615)
T TIGR01816        81 IEYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFNE  160 (615)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf             98862313577876652777978888983320778697521156332324200014202579999876664318744750


Q ss_pred             CEEEEEEECCCCC----CEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf             1565200013443----012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r  175 YFALDLIINSEGC----CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV  250 (611)
Q Consensus       175 ~~~~~Li~d~dG~----V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~  250 (611)
T Consensus       161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlPlqDmEF~  240 (615)
T TIGR01816       161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLPLQDMEFW  240 (615)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             22110465257895887998898760588888995410789737864056766445655213688887268871132231


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf             32888442201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r  251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP  330 (611)
Q Consensus       251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~  330 (611)
T Consensus       241 QFHPTGiagaG~LiTEG~RGEGG~L~Na~GERFMERYAP~~KDLAsRDvVaRsM~~Ei~EGRGvG~~KDhV~l~l~HLg~  320 (615)
T TIGR01816       241 QFHPTGIAGAGVLITEGVRGEGGILLNANGERFMERYAPTAKDLASRDVVARSMTLEIREGRGVGPNKDHVYLKLDHLGE  320 (615)
T ss_pred             CCCHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCH
T ss_conf             23703341087267501214775524688751020016751003686364662588764178969675889886134885


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r  331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL  410 (611)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl  410 (611)
T Consensus       321 E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~GE~ACvSVHGANRL  400 (615)
T TIGR01816       321 EVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAGEAACVSVHGANRL  400 (615)
T ss_pred             HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCC
T ss_conf             78865287754899986388851078689886341576732156434886424789861023766424520000253202


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r  411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL  490 (611)
Q Consensus       411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L  490 (611)
T Consensus       401 GtNSLLDLVVFGR~ag~~~~~~~ke~~~~~~~~~n~~e~~~~~~~~l~~~~g~~~va~lR~~LQ~smq~~~gVFRt~~~l  480 (615)
T TIGR01816       401 GTNSLLDLVVFGRAAGLSAAEYIKEGSDFKPLPENAEEESVKRLDDLREATGNERVADLRRELQRSMQNHAGVFRTGELL  480 (615)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECHHHH
T ss_conf             11245578898899999999971377787787977088999998766411587027899999888886150564546789


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH----
Q ss_conf             9999999999999841515787754588999999888899999999999962625504623533778876668803----
Q gi|254781043|r  491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV----  566 (611)
Q Consensus       491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~----  566 (611)
T Consensus       481 ~~gv~~i~~l~~R~k~~~i~Dks~~~Nt~lvEALEL~nLl~~A~~T~~sA~~RKESRGAHAREDy~~-----RdD~ydys  555 (615)
T TIGR01816       481 QKGVGEISELKERYKNVKINDKSKVWNTDLVEALELDNLLEVAEATVVSAEARKESRGAHAREDYPE-----RDDEYDYS  555 (615)
T ss_pred             HHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCC
T ss_conf             9999999998755641441005620056889998877799999999998862555688865566566-----67622245


Q ss_pred             -------------HHCEEEEEEEECCC---CEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             -------------21356999984689---8059999447444256755000027721679
Q gi|254781043|r  567 -------------NWRKHSLCWVDWNT---GKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       567 -------------nwl~h~~~~~~~~~---g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
T Consensus       556 kpi~G~~kkpfeenW~kHTl~y~d~g~dk~G~~~~~yk~V~~kp~~~~-~~~t~PP~~R~Y  615 (615)
T TIGR01816       556 KPIQGQQKKPFEENWLKHTLAYKDIGADKEGKVLLSYKPVALKPLTVA-AFETVPPKKRVY  615 (615)
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHCCCCCCCCCC
T ss_conf             665554467612200210013353788888860111001222577555-440587875789