HHsearch alignment for GI: 254781043 and conserved domain: TIGR01816
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=100.00 E-value=0 Score=1418.24 Aligned_cols=590 Identities=62% Similarity=1.021 Sum_probs=579.5
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-CCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899-99999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-PDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA 80 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA 80 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 94227988687568999998632792388983136886411223445788851778798863640310005652124689
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
T Consensus 81 iE~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~E 160 (615)
T TIGR01816 81 IEYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFNE 160 (615)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 98862313577876652777978888983320778697521156332324200014202579999876664318744750
Q ss_pred CEEEEEEECCCCC----CEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 1565200013443----012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 175 YFALDLIINSEGC----CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 175 ~~~~~Li~d~dG~----V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
T Consensus 161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlPlqDmEF~ 240 (615)
T TIGR01816 161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLPLQDMEFW 240 (615)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 22110465257895887998898760588888995410789737864056766445655213688887268871132231
Q ss_pred CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf 32888442201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r 251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330 (611)
Q Consensus 251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~ 330 (611)
T Consensus 241 QFHPTGiagaG~LiTEG~RGEGG~L~Na~GERFMERYAP~~KDLAsRDvVaRsM~~Ei~EGRGvG~~KDhV~l~l~HLg~ 320 (615)
T TIGR01816 241 QFHPTGIAGAGVLITEGVRGEGGILLNANGERFMERYAPTAKDLASRDVVARSMTLEIREGRGVGPNKDHVYLKLDHLGE 320 (615)
T ss_pred CCCHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCH
T ss_conf 23703341087267501214775524688751020016751003686364662588764178969675889886134885
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL 410 (611)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl 410 (611)
T Consensus 321 E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~GE~ACvSVHGANRL 400 (615)
T TIGR01816 321 EVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAGEAACVSVHGANRL 400 (615)
T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCC
T ss_conf 78865287754899986388851078689886341576732156434886424789861023766424520000253202
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r 411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL 490 (611)
Q Consensus 411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L 490 (611)
T Consensus 401 GtNSLLDLVVFGR~ag~~~~~~~ke~~~~~~~~~n~~e~~~~~~~~l~~~~g~~~va~lR~~LQ~smq~~~gVFRt~~~l 480 (615)
T TIGR01816 401 GTNSLLDLVVFGRAAGLSAAEYIKEGSDFKPLPENAEEESVKRLDDLREATGNERVADLRRELQRSMQNHAGVFRTGELL 480 (615)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECHHHH
T ss_conf 11245578898899999999971377787787977088999998766411587027899999888886150564546789
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH----
Q ss_conf 9999999999999841515787754588999999888899999999999962625504623533778876668803----
Q gi|254781043|r 491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV---- 566 (611)
Q Consensus 491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~---- 566 (611)
T Consensus 481 ~~gv~~i~~l~~R~k~~~i~Dks~~~Nt~lvEALEL~nLl~~A~~T~~sA~~RKESRGAHAREDy~~-----RdD~ydys 555 (615)
T TIGR01816 481 QKGVGEISELKERYKNVKINDKSKVWNTDLVEALELDNLLEVAEATVVSAEARKESRGAHAREDYPE-----RDDEYDYS 555 (615)
T ss_pred HHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCC
T ss_conf 9999999998755641441005620056889998877799999999998862555688865566566-----67622245
Q ss_pred -------------HHCEEEEEEEECCC---CEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf -------------21356999984689---8059999447444256755000027721679
Q gi|254781043|r 567 -------------NWRKHSLCWVDWNT---GKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 567 -------------nwl~h~~~~~~~~~---g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 556 kpi~G~~kkpfeenW~kHTl~y~d~g~dk~G~~~~~yk~V~~kp~~~~-~~~t~PP~~R~Y 615 (615)
T TIGR01816 556 KPIQGQQKKPFEENWLKHTLAYKDIGADKEGKVLLSYKPVALKPLTVA-AFETVPPKKRVY 615 (615)
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHCCCCCCCCCC
T ss_conf 665554467612200210013353788888860111001222577555-440587875789