HHsearch alignment for GI: 254781043 and conserved domain: TIGR01984

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.94  E-value=0.00061  Score=44.36  Aligned_cols=165  Identities=19%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCC-CCHHCCCCEEEECCCCCCCCHH--HHHHHHHHHCCCCC
Q ss_conf             5889899689999999999889-----82999986898852-1041165342513789999999--99998998458877
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRS-HTVAAQGGIAASLANMTPDSWQ--WHLYDTIKGSDWLG   90 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g-~s~~A~GGi~a~~~~~~~Ds~~--~~~~Dt~~~g~~l~   90 (611)
T Consensus         1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~-----~---f--kD~R~~AlS~GS~~~L~~l-Gll   69 (425)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPG-----F---F--KDARSLALSYGSKQILEKL-GLL   69 (425)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-----C---C--CCCHHHHHHHHHHHHHHHC-CCC
T ss_conf             978885658999999998506775576158986565744246864-----2---3--5650468768999999853-863


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf             9999999999889999999986-998132799855100146411456787656407986665426-----6789999998
Q gi|254781043|r   91 DVDAIQYLAMEAPQSVYELEHY-GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGH-----AILHTLYGQA  164 (611)
Q Consensus        91 d~~lv~~~~~~a~~~i~~Le~~-Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~-----~i~~~L~~~~  164 (611)
T Consensus        70 ----------q-Ph~W~~l~~~ratpI~~---IhVSD~g~fG~~~~~~~~-------~~~~aLGyVV~~~~~~~~L~~~l  128 (425)
T TIGR01984        70 ----------Q-PHLWPKLAPFRATPIKD---IHVSDQGHFGATELRASE-------FGLPALGYVVELADLGQALLKRL  128 (425)
T ss_pred             ----------C-HHHHHHHHCCCCCCCCE---EEEEECCCEEEEEECHHH-------CCCCCCCEEEEHHHHHHHHHHHH
T ss_conf             ----------3-12578860136787751---688645830013412536-------28764531421789999999998


Q ss_pred             HHC-CCEEECCCEEEEEEECCCC----------CCEEEEEEEE-CCCE--EEEECCCCEEEECCCC
Q ss_conf             731-2303113156520001344----------3012468980-5870--8995067247415765
Q gi|254781043|r  165 LKN-NAEFFIEYFALDLIINSEG----------CCVGVVAWQL-ETGE--IHRFSAKLVVLATGGY  216 (611)
Q Consensus       165 ~~~-gv~i~~~~~~~~Li~d~dG----------~V~Gav~~~~-~~G~--~~~i~AkaVILATGG~  216 (611)
T Consensus       129 ~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~-~lt~~~~rhP~~l~~~Lli~ADGGl  193 (425)
T TIGR01984       129 AKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEV-TLTDNEQRHPLQLQAKLLIAADGGL  193 (425)
T ss_pred             HHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEE-EEECCCCCCCEEEEEEEEEEECCCC
T ss_conf             6256651125753211210578630005666655103578-8830887564055530889855863