>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..

Probab=99.00 E-value=1.2e-08 Score=75.16 Aligned_cols=182 Identities=23% Similarity=0.303 Sum_probs=101.7 Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH-H-CCC-----------CE-------------EEECC--- Q ss_conf 0588989968999999999988982999986898852104-1-165-----------34-------------25137--- Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV-A-AQG-----------GI-------------AASLA--- 68 (611) Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~-~-A~G-----------Gi-------------~a~~~--- 68 (611) T Consensus 1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~IPGGS~G~f~R~GY~FDVGaS~iFGfg~~G~~NLlTrALaaVg~~~e 80 (506) T TIGR02730 1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGEKLE 80 (506) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHC T ss_conf 94789816831789999998546225532201147887675104763442022445415777745589999998622410 Q ss_pred ----------CCC-------CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCCC Q ss_conf ----------899-------99999999989984588779999999999889999999986998-----------13279 Q gi|254781043|r 69 ----------NMT-------PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVP-----------FSRNE 120 (611) Q Consensus 69 ----------~~~-------~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~-----------f~r~~ 120 (611) T Consensus 81 ~ipDp~~~~yHlP~~L~~~v~R~Y~~F~~~L~a--~FP~E~~Gi~~FYd~CW~vF~cLn~~eL~SLEeP~YL~~~Ff~~P 158 (506) T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVDREYDKFLQELVA--KFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLLRVFFKKP 158 (506) T ss_pred CCCCCCEEEEECCCCCCEEEECCHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCH T ss_conf 257853688776899851473318899999986--177501027787777889997530022223457058999986232 Q ss_pred -------------CCCEEEE--------CC-----------C-CCCC----------CCCCCCCCCEEEEECCCCCHHHH Q ss_conf -------------9855100--------14-----------6-4114----------56787656407986665426678 Q gi|254781043|r 121 -------------AGKIYQR--------PF-----------G-GHMQ----------NYGEGPPVQRTCAAADRTGHAIL 157 (611) Q Consensus 121 -------------~G~~~~~--------~~-----------g-g~~~----------~~~~g~~~~R~~~~~d~tG~~i~ 157 (611) T Consensus 159 l~CLgL~~yLP~N~G~iAR~~I~Dp~LL~FID~ECf~~SvvpA~~TPMINAgMVfsDRH~GGiNYP~-----GGVG-~IA 232 (506) T TIGR02730 159 LACLGLAKYLPQNVGDIARRYIKDPELLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPK-----GGVG-QIA 232 (506) T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCC-----CCHH-HHH T ss_conf 5788898750114457878523852143232100445663010258740011210034557633898-----8754-899 Q ss_pred HHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEEC Q ss_conf 99999987312303113156520001344301246898058708995067247415 Q gi|254781043|r 158 HTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLAT 213 (611) Q Consensus 158 ~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILAT 213 (611) T Consensus 233 ~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~-~~AvGV~---L~~G~--~~~~k~ivSNA 282 (506) T TIGR02730 233 EKLVKGLEKHGGKIRYKARVTKIILEN-GKAVGVK---LADGE--KIYAKRIVSNA 282 (506) T ss_pred HHHHHHHHHCCCCEEEEEEEEEEEECC-CCEEEEE---ECCCC--EEECCEEEECC T ss_conf 999988874164056300245545208-8455568---64883--65211676316

HHsearch alignment for GI: 254781043 and conserved domain: TIGR02730