HHsearch alignment for GI: 254781043 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.93 E-value=0.028 Score=33.47 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 033100123421577158537788853322760340212203356643047643222222321567755665420
Q gi|254781043|r 361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK 435 (611)
Q Consensus 361 p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~ 435 (611)
T Consensus 450 Pnt~~l~~~v~l~~~G~I~v--D~~~~TnvpGVFAAGDvt~~~~----k----Qi~~A~G~Ga~AAlsA~~Yl~r 514 (515)
T TIGR03140 450 PNTEWLKDAVELNRRGEIVI--DERGRTSVPGIFAAGDVTTVPY----K----QIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCHHHHHCHHCCCCCCEEEC--CCCCCCCCCCEEEEEECCCCCC----C----EEEEEHHHHHHHHHHHHHHHHC
T ss_conf 66256515111079973982--9987079998798566738986----6----7878666479999999998734