HHsearch alignment for GI: 254781043 and conserved domain: TIGR03140

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.93  E-value=0.028  Score=33.47  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=42.2

Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             033100123421577158537788853322760340212203356643047643222222321567755665420
Q gi|254781043|r  361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK  435 (611)
Q Consensus       361 p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~  435 (611)
T Consensus       450 Pnt~~l~~~v~l~~~G~I~v--D~~~~TnvpGVFAAGDvt~~~~----k----Qi~~A~G~Ga~AAlsA~~Yl~r  514 (515)
T TIGR03140       450 PNTEWLKDAVELNRRGEIVI--DERGRTSVPGIFAAGDVTTVPY----K----QIIIAMGEGAKAALSAFDYLIR  514 (515)
T ss_pred             CCHHHHHCHHCCCCCCEEEC--CCCCCCCCCCEEEEEECCCCCC----C----EEEEEHHHHHHHHHHHHHHHHC
T ss_conf             66256515111079973982--9987079998798566738986----6----7878666479999999998734