HHsearch alignment for GI: 254781043 and conserved domain: TIGR03197
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.02 E-value=0.00035 Score=45.93 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 266789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
T Consensus 134 p~~~~~al~~~a~-~g~~~~~~~~V~~i~~~g-~~~~v~----~~~g~--~~~ad~vV~AaG~~s~ 191 (381)
T TIGR03197 134 PPQLCRALLAHAG-IRLTLHFNTEITSLERDG-EGWQLL----DANGE--VIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHHHHHH-HCCEEEECCEEEEEEEEC-CEEEEE----ECCCC--EEECCEEEECCCCCHH
T ss_conf 8999999999997-297899362589999959-989999----89998--8973558985542035