Query gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 611
No_of_seqs 221 out of 3589
Neff 7.4
Searched_HMMs 39220
Date Mon May 30 04:58:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781043.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01812 sdhA_frdA_Gneg succi 100.0 0 0 1455.5 35.9 586 19-611 1-636 (636)
2 TIGR01816 sdhA_forward succina 100.0 0 0 1418.2 33.8 590 16-611 1-615 (615)
3 PRK09078 sdhA succinate dehydr 100.0 0 0 1236.7 53.6 598 6-611 1-598 (598)
4 PTZ00139 succinate dehydrogena 100.0 0 0 1227.1 51.5 600 5-611 22-622 (622)
5 PRK07057 sdhA succinate dehydr 100.0 0 0 1164.8 50.8 584 13-611 8-591 (591)
6 PRK08205 sdhA succinate dehydr 100.0 0 0 1157.3 49.7 577 14-611 2-583 (583)
7 PRK08626 fumarate reductase fl 100.0 0 0 1159.2 47.9 565 17-611 5-598 (657)
8 PRK08958 sdhA succinate dehydr 100.0 0 0 1153.1 51.6 579 16-611 6-588 (588)
9 PRK05675 sdhA succinate dehydr 100.0 0 0 1148.9 47.0 568 30-611 1-570 (570)
10 PRK07573 sdhA succinate dehydr 100.0 0 0 1149.2 46.4 577 6-611 22-637 (638)
11 PRK09231 fumarate reductase fl 100.0 0 0 1124.4 51.1 560 16-611 3-580 (582)
12 PRK05945 sdhA succinate dehydr 100.0 0 0 1124.3 49.3 565 17-611 3-575 (575)
13 PRK06452 sdhA succinate dehydr 100.0 0 0 1116.1 52.0 561 15-611 3-566 (566)
14 PRK06069 sdhA succinate dehydr 100.0 0 0 1106.4 51.6 567 16-611 4-582 (582)
15 PRK08641 sdhA succinate dehydr 100.0 0 0 1111.7 47.3 561 17-611 3-579 (589)
16 TIGR01176 fum_red_Fp fumarate 100.0 0 0 1093.0 35.7 559 17-611 3-584 (585)
17 PRK07803 sdhA succinate dehydr 100.0 0 0 1067.4 48.6 552 12-591 3-605 (631)
18 PRK06263 sdhA succinate dehydr 100.0 0 0 1025.9 47.4 524 16-578 6-534 (539)
19 PRK07395 L-aspartate oxidase; 100.0 0 0 999.6 43.9 532 12-590 5-554 (556)
20 PRK09077 L-aspartate oxidase; 100.0 0 0 1001.0 42.7 514 14-574 5-531 (535)
21 TIGR00551 nadB L-aspartate oxi 100.0 0 0 1000.0 36.7 510 16-556 1-546 (546)
22 COG1053 SdhA Succinate dehydro 100.0 0 0 991.4 40.9 553 13-592 2-561 (562)
23 PRK07512 L-aspartate oxidase; 100.0 0 0 966.3 41.2 490 13-579 5-500 (507)
24 PRK07804 L-aspartate oxidase; 100.0 0 0 955.0 44.6 521 7-591 5-531 (533)
25 PRK08071 L-aspartate oxidase; 100.0 0 0 954.0 40.5 498 17-577 3-504 (510)
26 COG0029 NadB Aspartate oxidase 100.0 0 0 949.6 36.5 498 19-576 9-511 (518)
27 KOG2403 consensus 100.0 0 0 942.0 29.1 598 7-611 45-642 (642)
28 PRK08275 putative oxidoreducta 100.0 0 0 918.0 47.5 526 12-593 4-554 (554)
29 TIGR01811 sdhA_Bsu succinate d 100.0 0 0 933.5 32.8 564 20-611 1-620 (620)
30 PRK06854 adenylylsulfate reduc 100.0 0 0 888.2 42.4 544 9-591 3-604 (610)
31 PRK08401 L-aspartate oxidase; 100.0 0 0 886.7 35.8 456 18-574 2-458 (464)
32 PRK13800 putative oxidoreducta 100.0 0 0 875.2 40.3 546 13-610 9-576 (894)
33 PRK06175 L-aspartate oxidase; 100.0 0 0 801.7 32.1 425 14-478 1-431 (433)
34 TIGR02061 aprA adenylylsulfate 100.0 0 0 613.5 24.5 524 19-590 1-647 (651)
35 PTZ00306 NADH-dependent fumara 100.0 0 0 602.5 31.3 395 18-438 410-907 (1167)
36 TIGR01813 flavo_cyto_c flavocy 100.0 0 0 609.6 22.3 383 19-427 1-487 (487)
37 PRK06481 fumarate reductase fl 100.0 0 0 539.4 29.6 399 14-436 57-505 (506)
38 pfam00890 FAD_binding_2 FAD bi 100.0 0 0 513.8 33.3 381 19-415 1-401 (401)
39 PRK07121 hypothetical protein; 100.0 0 0 506.8 32.5 404 13-433 16-490 (491)
40 PRK08274 tricarballylate dehyd 100.0 0 0 488.4 25.4 389 16-433 3-456 (456)
41 PRK12844 3-ketosteroid-delta-1 100.0 0 0 464.7 32.0 411 15-434 4-550 (552)
42 PRK12835 3-ketosteroid-delta-1 100.0 0 0 453.2 33.2 423 7-438 1-574 (584)
43 PRK12834 putative FAD-binding 100.0 0 0 456.6 28.4 404 16-433 1-549 (549)
44 PRK12845 3-ketosteroid-delta-1 100.0 0 0 441.3 32.7 420 3-433 2-565 (566)
45 PRK12839 hypothetical protein; 100.0 0 0 439.2 33.0 416 10-433 2-570 (574)
46 PRK12843 putative FAD-binding 100.0 0 0 437.4 32.7 414 15-437 12-574 (576)
47 PRK12837 3-ketosteroid-delta-1 100.0 0 0 437.3 32.0 401 14-431 6-512 (515)
48 PRK07843 3-ketosteroid-delta-1 100.0 0 0 436.2 32.2 412 14-432 2-559 (560)
49 PRK12842 putative succinate de 100.0 0 0 433.6 33.2 412 15-434 3-564 (567)
50 KOG2404 consensus 100.0 0 0 442.9 23.8 375 19-430 11-468 (477)
51 PRK06134 putative FAD-binding 100.0 0 0 426.8 30.9 417 10-434 4-570 (579)
52 pfam02910 Succ_DH_flav_C domai 100.0 4.1E-37 1E-41 261.4 14.1 127 470-611 1-127 (127)
53 TIGR02485 CobZ_N-term precorri 100.0 2.6E-33 6.6E-38 236.5 18.1 382 18-434 2-466 (467)
54 pfam03486 HI0933_like HI0933-l 100.0 4.1E-28 1E-32 202.5 26.0 343 18-427 1-404 (405)
55 COG3573 Predicted oxidoreducta 100.0 1.2E-28 3.2E-33 205.9 20.5 399 16-431 4-550 (552)
56 COG2081 Predicted flavoprotein 100.0 3E-26 7.6E-31 190.3 22.3 353 16-433 2-407 (408)
57 TIGR03140 AhpF alkyl hydropero 99.7 2.1E-15 5.4E-20 119.3 15.3 113 17-218 212-324 (515)
58 TIGR03143 AhpF_homolog putativ 99.7 1.9E-15 4.7E-20 119.7 13.0 115 14-218 1-115 (555)
59 PRK11101 glpA sn-glycerol-3-ph 99.7 3E-15 7.6E-20 118.4 13.5 192 16-217 4-210 (545)
60 PRK10157 putative oxidoreducta 99.7 1.1E-15 2.9E-20 121.1 10.9 162 14-216 2-163 (428)
61 PRK06370 mercuric reductase; V 99.6 6E-15 1.5E-19 116.3 10.4 37 15-51 2-38 (459)
62 PRK05329 anaerobic glycerol-3- 99.6 3.3E-13 8.3E-18 105.0 19.0 99 16-121 1-107 (425)
63 TIGR03378 glycerol3P_GlpB glyc 99.6 3.6E-13 9.1E-18 104.8 19.1 96 18-120 1-104 (419)
64 PRK12266 glpD glycerol-3-phosp 99.6 6E-14 1.5E-18 109.8 14.5 191 13-217 2-216 (503)
65 pfam01266 DAO FAD dependent ox 99.6 1.1E-13 2.8E-18 108.1 15.7 182 19-219 1-204 (309)
66 PRK10015 hypothetical protein; 99.6 7.7E-15 2E-19 115.6 9.7 163 14-217 2-164 (429)
67 PRK07845 flavoprotein disulfid 99.6 9.9E-14 2.5E-18 108.4 14.8 150 18-218 2-153 (467)
68 PRK13369 glycerol-3-phosphate 99.6 9.3E-14 2.4E-18 108.6 14.0 192 16-217 5-216 (503)
69 TIGR03329 Phn_aa_oxid putative 99.6 2E-13 5.1E-18 106.4 14.9 182 14-217 21-237 (460)
70 PRK04176 ribulose-1,5-biphosph 99.6 1E-13 2.6E-18 108.3 13.2 140 17-215 25-171 (257)
71 KOG0042 consensus 99.6 3E-14 7.6E-19 111.8 9.8 191 15-217 65-287 (680)
72 PRK11259 solA N-methyltryptoph 99.5 2.3E-13 5.9E-18 106.0 13.5 182 16-217 2-204 (377)
73 PRK05976 dihydrolipoamide dehy 99.5 3.3E-14 8.4E-19 111.5 8.9 39 14-52 1-39 (464)
74 PRK06416 dihydrolipoamide dehy 99.5 7.2E-14 1.8E-18 109.3 10.3 37 15-51 2-38 (462)
75 TIGR01372 soxA sarcosine oxida 99.5 1.5E-13 3.8E-18 107.2 11.9 52 9-60 168-219 (1026)
76 KOG2403 consensus 99.5 4.2E-14 1.1E-18 110.8 8.7 411 4-433 45-474 (642)
77 pfam01946 Thi4 Thi4 family. Th 99.5 3.4E-13 8.6E-18 104.9 13.3 140 17-215 17-162 (229)
78 COG0578 GlpA Glycerol-3-phosph 99.5 2.9E-13 7.3E-18 105.4 12.4 186 16-218 11-226 (532)
79 PRK06292 dihydrolipoamide dehy 99.5 1.1E-13 2.8E-18 108.1 10.0 35 17-51 3-37 (460)
80 PRK06116 glutathione reductase 99.5 2.4E-14 6.2E-19 112.4 6.6 38 14-51 1-38 (450)
81 PRK06327 dihydrolipoamide dehy 99.5 1.9E-13 4.8E-18 106.6 10.8 39 14-52 1-39 (475)
82 PRK12409 D-amino acid dehydrog 99.5 1.9E-12 4.9E-17 99.9 15.6 197 19-218 3-259 (410)
83 COG1249 Lpd Pyruvate/2-oxoglut 99.5 2.4E-13 6.2E-18 105.8 8.6 39 14-52 1-39 (454)
84 PRK07818 dihydrolipoamide dehy 99.5 7.6E-13 1.9E-17 102.6 10.7 38 14-51 1-38 (467)
85 PRK00711 D-amino acid dehydrog 99.4 2.6E-12 6.6E-17 99.1 12.0 189 20-218 3-258 (416)
86 PRK13748 putative mercuric red 99.4 2E-12 5.1E-17 99.9 10.8 39 14-52 95-133 (561)
87 COG0492 TrxB Thioredoxin reduc 99.4 6.2E-11 1.6E-15 90.1 18.2 114 16-218 2-116 (305)
88 COG0644 FixC Dehydrogenases (f 99.4 1.3E-13 3.4E-18 107.5 4.0 149 16-215 2-150 (396)
89 COG1635 THI4 Ribulose 1,5-bisp 99.4 3.3E-12 8.4E-17 98.5 11.0 140 17-215 30-176 (262)
90 PRK05192 tRNA uridine 5-carbox 99.4 5.7E-12 1.4E-16 96.9 10.1 151 14-216 3-158 (621)
91 PRK06912 acoL dihydrolipoamide 99.4 2.6E-12 6.6E-17 99.1 7.5 34 18-51 1-34 (458)
92 PRK12770 putative glutamate sy 99.3 2.6E-11 6.7E-16 92.5 12.0 37 18-54 18-54 (350)
93 PRK02106 choline dehydrogenase 99.3 1.7E-10 4.2E-15 87.3 15.2 54 161-217 203-258 (555)
94 TIGR02053 MerA mercuric reduct 99.3 3.2E-13 8.1E-18 105.1 1.1 317 18-434 1-355 (494)
95 TIGR02352 thiamin_ThiO glycine 99.3 5.6E-11 1.4E-15 90.4 12.4 183 20-218 1-209 (357)
96 pfam01134 GIDA Glucose inhibit 99.3 2.6E-11 6.6E-16 92.6 10.4 147 19-217 1-152 (391)
97 PRK11728 hypothetical protein; 99.3 2E-10 5.2E-15 86.7 15.0 179 16-217 1-205 (400)
98 TIGR03364 HpnW_proposed FAD de 99.3 2.8E-10 7.1E-15 85.8 15.7 178 18-218 1-198 (365)
99 TIGR02032 GG-red-SF geranylger 99.3 1E-11 2.5E-16 95.3 7.8 202 18-250 1-211 (343)
100 PRK06467 dihydrolipoamide dehy 99.3 3.9E-11 1E-15 91.4 10.5 148 14-217 1-148 (472)
101 COG0579 Predicted dehydrogenas 99.3 1.7E-10 4.4E-15 87.2 13.1 189 16-217 2-211 (429)
102 PRK06185 hypothetical protein; 99.2 4E-10 1E-14 84.8 13.8 162 14-218 3-170 (409)
103 KOG2415 consensus 99.2 3.9E-11 9.9E-16 91.4 8.4 168 17-220 76-259 (621)
104 TIGR00292 TIGR00292 thiazole b 99.2 8.2E-11 2.1E-15 89.3 10.1 120 6-185 12-134 (283)
105 PTZ00052 thioredoxin reductase 99.2 2E-10 5.2E-15 86.7 11.9 40 13-52 37-76 (541)
106 COG0665 DadA Glycine/D-amino a 99.2 2E-10 5.2E-15 86.7 11.2 191 15-220 2-215 (387)
107 COG2509 Uncharacterized FAD-de 99.2 1.3E-09 3.4E-14 81.4 15.2 63 153-221 172-234 (486)
108 pfam01494 FAD_binding_3 FAD bi 99.2 4.3E-10 1.1E-14 84.6 12.4 161 17-218 1-163 (349)
109 TIGR01350 lipoamide_DH dihydro 99.2 4.8E-11 1.2E-15 90.8 7.3 143 17-219 1-149 (481)
110 PRK01747 mnmC 5-methylaminomet 99.2 3.8E-09 9.6E-14 78.4 16.7 184 18-218 257-459 (660)
111 PRK05249 soluble pyridine nucl 99.2 1.4E-10 3.6E-15 87.8 9.4 39 17-55 6-44 (465)
112 COG0445 GidA Flavin-dependent 99.2 2.6E-11 6.6E-16 92.6 4.8 151 17-216 4-157 (621)
113 PRK09564 coenzyme A disulfide 99.2 5.7E-10 1.5E-14 83.8 11.3 113 19-218 2-116 (443)
114 PRK06126 hypothetical protein; 99.1 5.1E-09 1.3E-13 77.6 15.5 167 16-217 6-188 (545)
115 PRK07364 2-octaprenyl-6-methox 99.1 5E-09 1.3E-13 77.6 15.2 163 14-218 14-181 (413)
116 PRK06183 mhpA 3-(3-hydroxyphen 99.1 2.7E-09 6.8E-14 79.4 13.8 161 16-217 11-176 (554)
117 PRK06184 hypothetical protein; 99.1 6.4E-09 1.6E-13 76.9 15.6 162 17-218 6-172 (503)
118 PRK09126 hypothetical protein; 99.1 8.4E-09 2.1E-13 76.1 15.4 155 16-220 2-170 (392)
119 COG0654 UbiH 2-polyprenyl-6-me 99.1 3.4E-09 8.8E-14 78.7 13.3 155 17-217 2-162 (387)
120 PRK07233 hypothetical protein; 99.1 1.2E-08 3.1E-13 75.1 15.2 55 154-215 197-251 (430)
121 PRK08773 2-octaprenyl-3-methyl 99.1 9.5E-09 2.4E-13 75.8 14.5 165 17-218 6-170 (392)
122 PRK08774 consensus 99.1 8.9E-09 2.3E-13 76.0 13.9 166 14-219 1-172 (402)
123 PRK06115 dihydrolipoamide dehy 99.1 1.6E-09 4.1E-14 80.9 10.1 35 17-51 3-38 (466)
124 PRK07608 hypothetical protein; 99.0 2.9E-08 7.3E-13 72.7 15.7 152 15-218 3-169 (389)
125 PRK08244 hypothetical protein; 99.0 1.9E-08 5E-13 73.8 14.8 159 16-217 1-159 (494)
126 TIGR03467 HpnE squalene-associ 99.0 1.3E-08 3.4E-13 74.8 13.8 57 153-215 207-263 (430)
127 TIGR02733 desat_CrtD C-3',4' d 99.0 1.6E-08 4E-13 74.4 13.7 192 17-212 1-289 (499)
128 PRK08020 ubiF 2-octaprenyl-3-m 99.0 2.2E-08 5.7E-13 73.4 14.2 153 15-219 3-171 (391)
129 PRK12809 putative oxidoreducta 99.0 5E-08 1.3E-12 71.1 15.9 69 19-119 312-380 (639)
130 PRK06834 hypothetical protein; 99.0 1.6E-08 4E-13 74.4 13.3 153 17-217 3-156 (488)
131 COG3075 GlpB Anaerobic glycero 99.0 1.4E-08 3.7E-13 74.6 12.9 35 16-50 1-35 (421)
132 PRK08294 phenol 2-monooxygenas 99.0 5.3E-08 1.4E-12 70.9 15.5 170 16-218 31-211 (634)
133 TIGR02730 carot_isom carotene 99.0 1.2E-08 3E-13 75.2 12.2 182 18-213 1-282 (506)
134 TIGR01424 gluta_reduc_2 glutat 99.0 3.9E-09 9.8E-14 78.4 9.5 289 17-399 2-334 (478)
135 PRK12769 putative oxidoreducta 99.0 8.3E-08 2.1E-12 69.6 16.2 69 19-119 329-397 (654)
136 PRK12831 putative oxidoreducta 99.0 8.7E-08 2.2E-12 69.5 16.2 58 368-435 405-462 (464)
137 PRK07208 hypothetical protein; 99.0 9.8E-08 2.5E-12 69.2 16.4 57 154-212 212-268 (474)
138 PRK05714 2-octaprenyl-3-methyl 99.0 3.3E-08 8.4E-13 72.3 14.0 153 16-218 1-169 (405)
139 PRK06475 salicylate hydroxylas 99.0 6.8E-08 1.7E-12 70.2 15.5 161 17-219 2-169 (400)
140 COG1233 Phytoene dehydrogenase 99.0 1.6E-08 4.1E-13 74.3 11.8 56 154-215 224-279 (487)
141 PRK08163 salicylate hydroxylas 99.0 6.7E-08 1.7E-12 70.3 15.0 160 14-218 1-167 (396)
142 PRK07190 hypothetical protein; 99.0 7.2E-08 1.8E-12 70.0 15.0 159 16-217 4-165 (480)
143 KOG4716 consensus 99.0 6.5E-08 1.6E-12 70.4 14.7 55 14-68 16-70 (503)
144 PRK12771 putative glutamate sy 99.0 7.7E-08 2E-12 69.9 14.8 68 19-118 139-206 (560)
145 PRK08132 hypothetical protein; 98.9 9.4E-08 2.4E-12 69.3 15.1 161 17-218 23-186 (549)
146 PRK11749 putative oxidoreducta 98.9 4.5E-08 1.1E-12 71.4 13.2 59 369-437 400-458 (460)
147 PRK12810 gltD glutamate syntha 98.9 1.4E-07 3.5E-12 68.2 15.5 61 368-438 411-471 (472)
148 PRK08013 hypothetical protein; 98.9 1.5E-07 3.9E-12 67.9 15.7 151 17-219 3-170 (400)
149 PRK07333 2-octaprenyl-6-methox 98.9 1.1E-07 2.7E-12 68.9 14.5 166 17-219 1-169 (403)
150 COG3634 AhpF Alkyl hydroperoxi 98.9 2.8E-08 7.2E-13 72.7 11.1 113 17-215 211-323 (520)
151 TIGR01292 TRX_reduct thioredox 98.9 3.3E-08 8.3E-13 72.3 11.4 119 18-218 1-120 (321)
152 PRK10262 thioredoxin reductase 98.9 9.4E-08 2.4E-12 69.3 13.7 113 16-217 5-117 (321)
153 PRK07045 putative monooxygenas 98.9 1E-07 2.6E-12 69.1 13.8 157 16-218 4-166 (388)
154 PRK07494 2-octaprenyl-6-methox 98.9 1.2E-07 3.1E-12 68.6 14.0 157 16-219 4-167 (386)
155 PRK12778 putative bifunctional 98.9 4.2E-07 1.1E-11 65.0 16.3 70 18-119 440-509 (760)
156 KOG1298 consensus 98.9 2.1E-08 5.5E-13 73.5 9.6 189 14-248 42-235 (509)
157 PRK08850 2-octaprenyl-6-methox 98.9 2.2E-07 5.7E-12 66.8 14.8 161 14-217 1-168 (405)
158 PRK08243 4-hydroxybenzoate 3-m 98.9 4.5E-07 1.2E-11 64.8 16.3 158 16-217 1-163 (392)
159 TIGR01373 soxB sarcosine oxida 98.9 5.2E-09 1.3E-13 77.5 6.2 189 15-244 28-251 (407)
160 PRK11445 putative oxidoreducta 98.9 2.4E-07 6.2E-12 66.6 14.4 157 17-219 1-159 (348)
161 PRK07538 hypothetical protein; 98.8 3.3E-07 8.3E-12 65.8 14.8 158 19-218 2-166 (413)
162 pfam07992 Pyr_redox_2 Pyridine 98.8 5.7E-08 1.5E-12 70.7 10.8 108 19-218 1-108 (277)
163 PRK06996 hypothetical protein; 98.8 2.7E-07 6.9E-12 66.3 14.3 164 9-217 3-174 (397)
164 KOG2311 consensus 98.8 1.6E-08 4.2E-13 74.2 7.6 161 15-232 26-204 (679)
165 PRK13984 putative oxidoreducta 98.8 4.4E-07 1.1E-11 64.9 14.8 69 19-119 285-353 (604)
166 PRK09754 phenylpropionate diox 98.8 1.5E-08 3.8E-13 74.5 7.2 34 17-50 3-38 (400)
167 TIGR01790 carotene-cycl lycope 98.8 2.6E-07 6.7E-12 66.4 13.5 311 19-437 1-324 (419)
168 PRK08849 2-octaprenyl-3-methyl 98.8 3.5E-07 9E-12 65.5 13.7 151 17-218 3-168 (384)
169 PRK07846 mycothione/glutathion 98.8 8.5E-08 2.2E-12 69.6 10.2 33 17-51 1-33 (453)
170 COG2303 BetA Choline dehydroge 98.8 6E-07 1.5E-11 64.0 14.3 54 164-218 213-267 (542)
171 TIGR01438 TGR thioredoxin and 98.8 3E-07 7.7E-12 66.0 12.6 146 17-215 2-160 (513)
172 PRK06847 hypothetical protein; 98.7 6.3E-07 1.6E-11 63.9 13.6 155 19-218 6-164 (375)
173 PRK05732 2-octaprenyl-6-methox 98.7 1.3E-06 3.2E-11 61.9 15.0 162 17-219 3-171 (395)
174 TIGR03452 mycothione_red mycot 98.7 2.4E-07 6E-12 66.7 11.2 34 16-51 1-34 (452)
175 TIGR01316 gltA glutamate synth 98.7 4.9E-07 1.3E-11 64.6 12.6 69 17-117 142-210 (462)
176 TIGR01988 Ubi-OHases Ubiquinon 98.7 4.9E-07 1.3E-11 64.6 12.5 151 19-217 1-190 (445)
177 PRK08010 pyridine nucleotide-d 98.7 2.7E-08 7E-13 72.8 5.6 42 17-58 3-44 (441)
178 PRK07251 pyridine nucleotide-d 98.7 2.4E-08 6.1E-13 73.2 5.2 44 16-59 2-45 (438)
179 TIGR03377 glycerol3P_GlpA glyc 98.7 1.2E-07 3.2E-12 68.5 8.7 64 153-217 127-190 (516)
180 PRK13512 coenzyme A disulfide 98.7 2.7E-08 7E-13 72.8 5.3 50 165-218 69-118 (438)
181 KOG1335 consensus 98.7 5.4E-07 1.4E-11 64.3 11.9 155 8-220 30-188 (506)
182 PRK08948 consensus 98.7 1.4E-06 3.4E-11 61.7 13.8 143 18-218 1-167 (392)
183 PTZ00153 lipoamide dehydrogena 98.7 1.2E-07 3.1E-12 68.5 8.5 40 12-51 118-159 (673)
184 PRK12814 putative NADPH-depend 98.7 2.6E-06 6.6E-11 59.9 15.1 60 368-437 445-504 (652)
185 PRK12775 putative trifunctiona 98.6 3.6E-06 9.2E-11 58.9 14.8 63 366-438 695-757 (993)
186 PRK06617 2-octaprenyl-6-methox 98.5 3.6E-06 9.1E-11 59.0 12.8 156 18-219 2-162 (374)
187 TIGR01318 gltD_gamma_fam gluta 98.5 3.3E-06 8.4E-11 59.2 12.5 317 4-433 133-478 (480)
188 KOG2820 consensus 98.5 1.7E-06 4.5E-11 61.0 11.0 185 14-223 4-218 (399)
189 TIGR01421 gluta_reduc_1 glutat 98.5 3.5E-07 8.9E-12 65.6 7.2 300 16-402 1-329 (475)
190 TIGR03315 Se_ygfK putative sel 98.5 1.4E-05 3.7E-10 55.0 14.7 68 19-118 539-606 (1012)
191 TIGR01377 soxA_mon sarcosine o 98.5 1.8E-05 4.7E-10 54.3 15.0 174 18-217 1-207 (401)
192 PRK13339 malate:quinone oxidor 98.5 3.4E-06 8.6E-11 59.1 10.9 192 16-217 5-247 (497)
193 pfam06039 Mqo Malate:quinone o 98.5 2.8E-06 7.1E-11 59.7 10.3 195 15-217 2-245 (489)
194 PRK07236 hypothetical protein; 98.4 8.9E-06 2.3E-10 56.4 12.7 33 18-50 7-39 (386)
195 PRK09853 putative selenate red 98.4 1.3E-05 3.4E-10 55.2 13.4 69 19-119 552-620 (1032)
196 COG2072 TrkA Predicted flavopr 98.4 9.3E-06 2.4E-10 56.2 12.5 37 16-52 7-44 (443)
197 PRK07588 hypothetical protein; 98.4 1.4E-05 3.6E-10 55.1 13.3 153 19-217 2-158 (391)
198 KOG2853 consensus 98.4 7.1E-06 1.8E-10 57.0 11.3 193 11-217 80-320 (509)
199 KOG1238 consensus 98.4 6.6E-05 1.7E-09 50.7 15.3 51 166-217 266-318 (623)
200 PRK06753 hypothetical protein; 98.3 4.2E-05 1.1E-09 52.0 14.1 35 19-53 2-36 (373)
201 PRK05868 hypothetical protein; 98.3 5.1E-05 1.3E-09 51.4 14.0 159 19-218 3-161 (372)
202 pfam01593 Amino_oxidase Flavin 98.3 3.4E-05 8.7E-10 52.6 12.4 52 158-216 208-259 (444)
203 KOG0405 consensus 98.3 6.3E-06 1.6E-10 57.4 8.4 147 15-217 18-165 (478)
204 COG1148 HdrA Heterodisulfide r 98.2 2.2E-06 5.7E-11 60.3 4.7 42 14-55 121-162 (622)
205 KOG4254 consensus 98.2 8.3E-06 2.1E-10 56.6 7.2 56 155-216 265-320 (561)
206 pfam04820 Trp_halogenase Trypt 98.1 0.00043 1.1E-08 45.3 15.7 55 155-215 158-212 (457)
207 KOG2844 consensus 98.1 0.00019 4.9E-09 47.6 13.7 186 16-218 38-244 (856)
208 pfam00743 FMO-like Flavin-bind 98.1 1.8E-05 4.5E-10 54.4 8.0 146 19-220 3-153 (532)
209 TIGR00031 UDP-GALP_mutase UDP- 98.1 4.4E-06 1.1E-10 58.3 4.9 242 17-291 1-339 (390)
210 TIGR03197 MnmC_Cterm tRNA U-34 98.0 0.00035 8.9E-09 45.9 13.2 58 153-218 134-191 (381)
211 TIGR02023 BchP-ChlP geranylger 98.0 5E-06 1.3E-10 58.0 3.7 348 18-492 1-364 (408)
212 PRK08255 salicylyl-CoA 5-hydro 98.0 0.0001 2.6E-09 49.4 10.3 133 19-195 2-142 (770)
213 PRK11883 protoporphyrinogen ox 98.0 1.1E-05 2.9E-10 55.6 5.3 37 19-55 2-40 (452)
214 KOG0029 consensus 98.0 1.1E-05 2.9E-10 55.7 5.1 42 13-54 11-52 (501)
215 PRK05257 malate:quinone oxidor 98.0 0.00051 1.3E-08 44.8 13.3 198 14-217 6-250 (499)
216 TIGR02734 crtI_fam phytoene de 98.0 3.5E-05 8.9E-10 52.5 7.2 56 154-214 227-290 (526)
217 KOG2960 consensus 97.9 1.1E-05 2.7E-10 55.9 4.2 118 17-192 76-200 (328)
218 TIGR01984 UbiH 2-polyprenyl-6- 97.9 0.00061 1.6E-08 44.4 13.2 165 19-216 1-193 (425)
219 PRK05335 tRNA (uracil-5-)-meth 97.9 2.2E-05 5.6E-10 53.8 4.7 57 389-455 331-387 (434)
220 COG0562 Glf UDP-galactopyranos 97.8 3E-05 7.7E-10 52.9 5.1 49 17-65 1-52 (374)
221 TIGR00275 TIGR00275 conserved 97.8 0.00015 3.8E-09 48.4 8.6 187 21-246 1-190 (411)
222 KOG2614 consensus 97.8 4.1E-05 1E-09 52.0 5.4 39 17-55 2-40 (420)
223 TIGR01317 GOGAT_sm_gam glutama 97.8 0.00015 3.9E-09 48.3 8.3 176 19-249 153-340 (517)
224 TIGR01810 betA choline dehydro 97.8 0.00013 3.3E-09 48.7 7.7 55 160-217 205-262 (540)
225 pfam06100 Strep_67kDa_ant Stre 97.8 0.0016 4.1E-08 41.6 12.9 60 155-215 208-271 (500)
226 COG3380 Predicted NAD/FAD-depe 97.7 6.2E-05 1.6E-09 50.9 5.0 156 19-217 3-160 (331)
227 PRK12779 putative bifunctional 97.7 0.00029 7.3E-09 46.5 7.9 69 19-119 308-376 (944)
228 PRK09897 hypothetical protein; 97.7 0.0014 3.7E-08 41.9 11.3 164 19-225 3-181 (535)
229 PRK13977 myosin-cross-reactive 97.7 0.002 5.1E-08 41.0 12.0 60 155-216 227-291 (577)
230 COG1232 HemY Protoporphyrinoge 97.6 8.6E-05 2.2E-09 49.9 5.0 36 19-54 2-39 (444)
231 COG3349 Uncharacterized conser 97.6 8.4E-05 2.1E-09 50.0 4.9 36 19-54 2-37 (485)
232 TIGR03219 salicylate_mono sali 97.6 9.3E-05 2.4E-09 49.7 5.1 35 19-53 2-37 (414)
233 COG1231 Monoamine oxidase [Ami 97.6 8.9E-05 2.3E-09 49.8 4.7 45 15-59 5-51 (450)
234 COG4529 Uncharacterized protei 97.6 0.0012 3.1E-08 42.4 10.2 39 18-56 2-43 (474)
235 KOG0404 consensus 97.6 0.00033 8.4E-09 46.1 7.3 293 14-434 5-319 (322)
236 pfam05834 Lycopene_cycl Lycope 97.6 0.00012 3.1E-09 49.0 4.9 33 19-51 1-35 (374)
237 KOG2665 consensus 97.5 0.00091 2.3E-08 43.2 8.6 180 13-215 44-255 (453)
238 KOG1399 consensus 97.5 0.00016 4.1E-09 48.2 4.8 146 17-217 6-153 (448)
239 PRK04965 nitric oxide reductas 97.5 0.0037 9.4E-08 39.2 11.2 32 19-50 4-37 (378)
240 TIGR01320 mal_quin_oxido malat 97.4 0.0011 2.8E-08 42.7 8.3 191 18-217 1-242 (487)
241 PRK12416 protoporphyrinogen ox 97.4 0.00029 7.5E-09 46.4 5.2 36 19-54 3-44 (466)
242 PRK09754 phenylpropionate diox 97.3 0.0031 7.8E-08 39.8 9.7 47 164-219 68-114 (400)
243 PRK07818 dihydrolipoamide dehy 97.3 0.009 2.3E-07 36.7 11.6 47 164-218 102-148 (467)
244 PRK05976 dihydrolipoamide dehy 97.3 0.014 3.5E-07 35.5 12.3 46 164-217 105-150 (464)
245 pfam00996 GDI GDP dissociation 97.3 0.0005 1.3E-08 44.9 4.8 42 14-55 1-42 (439)
246 TIGR00137 gid gid protein; Int 97.2 0.00048 1.2E-08 45.0 3.9 29 19-47 2-30 (444)
247 PRK09564 coenzyme A disulfide 97.1 0.013 3.4E-07 35.6 11.3 51 368-431 261-315 (443)
248 KOG0685 consensus 97.1 0.00084 2.1E-08 43.4 5.0 51 4-54 3-59 (498)
249 PRK12775 putative trifunctiona 97.1 0.00038 9.6E-09 45.7 2.9 55 162-216 619-687 (993)
250 TIGR00136 gidA glucose-inhibit 97.1 0.0011 2.9E-08 42.6 5.3 33 18-50 1-33 (630)
251 PRK06416 dihydrolipoamide dehy 97.1 0.021 5.5E-07 34.2 11.8 49 161-218 99-147 (462)
252 PRK06115 dihydrolipoamide dehy 97.1 0.022 5.6E-07 34.2 11.7 46 164-217 103-148 (466)
253 KOG2852 consensus 97.1 0.0038 9.7E-08 39.1 7.8 174 18-220 11-211 (380)
254 TIGR01423 trypano_reduc trypan 97.1 0.0051 1.3E-07 38.3 8.4 208 16-247 2-229 (486)
255 PRK06116 glutathione reductase 97.0 0.017 4.3E-07 34.9 10.9 43 163-218 102-144 (450)
256 TIGR01789 lycopene_cycl lycope 97.0 0.0012 3E-08 42.5 4.6 280 19-419 1-290 (392)
257 TIGR01989 COQ6 Ubiquinone bios 97.0 0.00094 2.4E-08 43.1 4.0 37 18-54 1-43 (481)
258 PRK06370 mercuric reductase; V 96.9 0.021 5.4E-07 34.3 10.7 53 368-431 280-332 (459)
259 TIGR03140 AhpF alkyl hydropero 96.9 0.028 7.2E-07 33.5 11.3 65 361-435 450-514 (515)
260 PRK10262 thioredoxin reductase 96.9 0.0007 1.8E-08 44.0 2.9 47 384-438 273-319 (321)
261 PRK06327 dihydrolipoamide dehy 96.8 0.038 9.7E-07 32.6 11.6 53 368-431 294-346 (475)
262 PRK12810 gltD glutamate syntha 96.8 0.00067 1.7E-08 44.1 2.3 37 18-54 144-180 (472)
263 PRK06292 dihydrolipoamide dehy 96.8 0.042 1.1E-06 32.3 11.6 53 368-431 278-330 (460)
264 PRK05249 soluble pyridine nucl 96.7 0.037 9.4E-07 32.7 10.5 50 160-217 101-150 (465)
265 PRK11749 putative oxidoreducta 96.6 0.0013 3.3E-08 42.2 2.6 36 19-54 142-177 (460)
266 PRK12831 putative oxidoreducta 96.6 0.0013 3.4E-08 42.2 2.4 36 19-54 142-177 (464)
267 PRK12809 putative oxidoreducta 96.6 0.0016 4.1E-08 41.6 2.6 60 368-436 576-637 (639)
268 TIGR02374 nitri_red_nirB nitri 96.5 0.0075 1.9E-07 37.2 5.9 31 20-50 1-35 (813)
269 PRK12769 putative oxidoreducta 96.5 0.0015 3.9E-08 41.7 2.3 58 368-434 593-652 (654)
270 PRK06912 acoL dihydrolipoamide 96.5 0.066 1.7E-06 31.1 10.9 44 368-430 285-328 (458)
271 PRK12814 putative NADPH-depend 96.5 0.0022 5.5E-08 40.8 2.8 36 19-54 195-230 (652)
272 TIGR01350 lipoamide_DH dihydro 96.4 0.071 1.8E-06 30.8 10.8 47 368-434 301-348 (481)
273 pfam00732 GMC_oxred_N GMC oxid 96.4 0.0067 1.7E-07 37.6 4.9 56 162-217 135-192 (218)
274 PRK07845 flavoprotein disulfid 96.4 0.079 2E-06 30.6 10.6 53 368-431 285-337 (467)
275 TIGR01292 TRX_reduct thioredox 96.3 0.0085 2.2E-07 36.9 5.1 38 385-433 280-321 (321)
276 TIGR01316 gltA glutamate synth 96.3 0.0026 6.6E-08 40.2 2.3 55 368-433 407-462 (462)
277 TIGR02360 pbenz_hydroxyl 4-hyd 96.2 0.09 2.3E-06 30.2 14.0 167 16-223 1-171 (393)
278 PRK09288 purT phosphoribosylgl 96.2 0.025 6.4E-07 33.8 7.3 34 17-50 12-45 (395)
279 TIGR03315 Se_ygfK putative sel 96.2 0.0026 6.5E-08 40.3 2.2 55 368-432 784-838 (1012)
280 KOG1276 consensus 96.2 0.0077 2E-07 37.2 4.6 39 17-55 11-51 (491)
281 PRK12778 putative bifunctional 96.2 0.0036 9.2E-08 39.3 2.5 16 157-172 192-207 (760)
282 TIGR03169 Nterm_to_SelD pyridi 96.1 0.0074 1.9E-07 37.3 3.9 32 19-50 1-35 (364)
283 COG2907 Predicted NAD/FAD-bind 96.0 0.0067 1.7E-07 37.6 3.5 39 18-57 9-47 (447)
284 PTZ00318 NADH dehydrogenase; P 95.9 0.0091 2.3E-07 36.7 3.7 32 19-50 12-43 (514)
285 COG0446 HcaD Uncharacterized N 95.8 0.019 5E-07 34.5 5.0 30 20-49 1-32 (415)
286 PRK12771 putative glutamate sy 95.8 0.0076 1.9E-07 37.2 2.9 47 382-437 397-443 (560)
287 TIGR03143 AhpF_homolog putativ 95.8 0.15 3.7E-06 28.8 11.6 59 368-436 253-311 (555)
288 COG0493 GltD NADPH-dependent g 95.7 0.011 2.7E-07 36.2 3.5 35 18-52 124-158 (457)
289 COG1206 Gid NAD(FAD)-utilizing 95.7 0.0098 2.5E-07 36.5 3.2 33 18-50 4-36 (439)
290 TIGR03385 CoA_CoA_reduc CoA-di 95.7 0.0059 1.5E-07 37.9 2.1 52 164-219 54-105 (427)
291 pfam01262 AlaDh_PNT_C Alanine 95.7 0.019 4.9E-07 34.6 4.7 33 18-50 21-53 (150)
292 PRK09853 putative selenate red 95.7 0.0069 1.8E-07 37.5 2.3 53 368-431 798-850 (1032)
293 PRK13748 putative mercuric red 95.6 0.18 4.5E-06 28.3 11.8 53 368-431 375-427 (561)
294 KOG0399 consensus 95.5 0.19 4.8E-06 28.1 14.5 33 13-48 659-699 (2142)
295 pfam00070 Pyr_redox Pyridine n 95.4 0.026 6.7E-07 33.7 4.6 31 20-50 2-32 (82)
296 TIGR02731 phytoene_desat phyto 95.4 0.19 4.9E-06 28.0 13.2 182 20-213 2-272 (454)
297 COG1252 Ndh NADH dehydrogenase 95.4 0.027 7E-07 33.5 4.6 33 18-50 4-38 (405)
298 COG2072 TrkA Predicted flavopr 95.3 0.027 7E-07 33.5 4.4 57 159-220 91-147 (443)
299 KOG1800 consensus 95.3 0.033 8.5E-07 33.0 4.7 49 19-77 22-72 (468)
300 PRK12779 putative bifunctional 95.2 0.028 7.3E-07 33.4 4.2 55 365-429 568-622 (944)
301 TIGR02374 nitri_red_nirB nitri 95.2 0.0068 1.7E-07 37.5 1.0 46 164-218 65-110 (813)
302 PTZ00188 adrenodoxin reductase 95.2 0.055 1.4E-06 31.6 5.5 42 17-58 39-81 (506)
303 PRK04965 nitric oxide reductas 95.2 0.039 9.9E-07 32.6 4.7 47 162-218 66-112 (378)
304 TIGR02028 ChlP geranylgeranyl 95.2 0.024 6.2E-07 33.9 3.7 168 20-246 3-187 (401)
305 TIGR01318 gltD_gamma_fam gluta 95.1 0.025 6.3E-07 33.8 3.6 100 54-177 104-216 (480)
306 KOG1439 consensus 95.1 0.0092 2.3E-07 36.6 1.3 41 14-54 1-41 (440)
307 TIGR02732 zeta_caro_desat caro 94.9 0.045 1.2E-06 32.1 4.5 35 20-54 2-36 (474)
308 PRK09424 pntA NAD(P) transhydr 94.9 0.039 1E-06 32.5 4.0 22 368-393 278-299 (510)
309 TIGR00692 tdh L-threonine 3-de 94.8 0.055 1.4E-06 31.6 4.6 16 321-337 233-248 (341)
310 KOG4405 consensus 94.7 0.033 8.5E-07 33.0 3.4 41 15-55 6-46 (547)
311 TIGR03385 CoA_CoA_reduc CoA-di 94.7 0.066 1.7E-06 31.0 4.8 52 367-431 248-303 (427)
312 TIGR00313 cobQ cobyric acid sy 94.4 0.023 5.9E-07 34.0 2.0 97 5-115 110-216 (502)
313 KOG2755 consensus 94.3 0.022 5.5E-07 34.2 1.6 38 20-57 2-41 (334)
314 PRK13984 putative oxidoreducta 94.2 0.022 5.7E-07 34.1 1.5 42 384-435 562-603 (604)
315 COG5044 MRS6 RAB proteins gera 94.0 0.11 2.8E-06 29.6 4.7 39 16-54 5-43 (434)
316 KOG3855 consensus 93.9 0.14 3.7E-06 28.8 5.3 34 17-50 36-73 (481)
317 PRK13512 coenzyme A disulfide 93.9 0.12 2.9E-06 29.5 4.8 34 19-52 3-38 (438)
318 TIGR01369 CPSaseII_lrg carbamo 93.9 0.089 2.3E-06 30.2 4.1 32 19-50 8-50 (1089)
319 COG3486 IucD Lysine/ornithine 93.8 0.19 4.9E-06 28.0 5.8 40 14-53 2-42 (436)
320 KOG1336 consensus 93.2 0.029 7.5E-07 33.3 0.7 44 163-215 136-179 (478)
321 PRK02006 murD UDP-N-acetylmura 92.8 0.19 4.8E-06 28.1 4.4 31 19-49 9-39 (501)
322 TIGR00292 TIGR00292 thiazole b 92.6 0.044 1.1E-06 32.2 1.0 45 386-432 237-281 (283)
323 PRK00141 murD UDP-N-acetylmura 92.4 0.26 6.6E-06 27.2 4.7 32 19-50 19-50 (476)
324 PRK07251 pyridine nucleotide-d 92.1 0.28 7.1E-06 27.0 4.5 49 162-219 84-132 (438)
325 pfam07992 Pyr_redox_2 Pyridine 92.0 0.31 7.9E-06 26.7 4.7 32 368-401 243-274 (277)
326 PRK01438 murD UDP-N-acetylmura 92.0 0.28 7.2E-06 26.9 4.5 32 19-50 16-47 (481)
327 PRK06467 dihydrolipoamide dehy 92.0 0.29 7.4E-06 26.8 4.5 39 384-431 298-336 (472)
328 PRK05562 precorrin-2 dehydroge 91.8 0.31 7.9E-06 26.6 4.4 34 16-49 23-56 (222)
329 pfam00743 FMO-like Flavin-bind 91.7 0.14 3.5E-06 29.0 2.6 44 3-48 171-214 (532)
330 TIGR03452 mycothione_red mycot 91.6 0.37 9.6E-06 26.1 4.8 38 384-430 289-326 (452)
331 PRK02472 murD UDP-N-acetylmura 91.5 0.35 8.8E-06 26.3 4.5 32 19-50 11-42 (450)
332 PRK07846 mycothione/glutathion 91.5 0.36 9.3E-06 26.2 4.6 52 368-430 274-325 (453)
333 PRK06718 precorrin-2 dehydroge 90.9 0.44 1.1E-05 25.7 4.5 32 18-49 11-42 (202)
334 PRK08010 pyridine nucleotide-d 90.8 0.51 1.3E-05 25.3 4.8 42 167-217 90-131 (441)
335 KOG3851 consensus 90.7 0.27 6.8E-06 27.1 3.2 34 16-49 38-73 (446)
336 PRK01390 murD UDP-N-acetylmura 90.6 0.51 1.3E-05 25.2 4.6 32 19-50 11-42 (457)
337 TIGR02356 adenyl_thiF thiazole 90.6 0.33 8.4E-06 26.5 3.6 37 19-55 23-60 (210)
338 PRK06719 precorrin-2 dehydroge 90.6 0.62 1.6E-05 24.7 5.0 43 7-49 1-45 (157)
339 PRK03369 murD UDP-N-acetylmura 90.5 0.48 1.2E-05 25.4 4.5 32 19-50 14-45 (487)
340 PRK03806 murD UDP-N-acetylmura 90.4 0.47 1.2E-05 25.5 4.3 30 19-48 8-37 (438)
341 TIGR00507 aroE shikimate 5-deh 90.4 0.49 1.3E-05 25.3 4.4 18 201-218 115-134 (286)
342 KOG3923 consensus 90.3 0.88 2.2E-05 23.7 5.6 44 18-61 4-54 (342)
343 COG1635 THI4 Ribulose 1,5-bisp 90.1 0.18 4.7E-06 28.1 2.0 43 388-432 216-258 (262)
344 COG3634 AhpF Alkyl hydroperoxi 89.8 0.28 7.1E-06 27.0 2.7 24 367-400 466-489 (520)
345 PRK06249 2-dehydropantoate 2-r 89.8 0.75 1.9E-05 24.1 4.9 32 19-50 7-38 (313)
346 PRK04308 murD UDP-N-acetylmura 89.8 0.58 1.5E-05 24.9 4.3 32 19-50 7-38 (445)
347 PRK04176 ribulose-1,5-biphosph 89.7 0.19 4.9E-06 28.0 1.8 45 388-434 211-255 (257)
348 PRK03803 murD UDP-N-acetylmura 89.3 0.54 1.4E-05 25.1 3.9 32 17-48 7-38 (448)
349 PRK00683 murD UDP-N-acetylmura 89.0 0.62 1.6E-05 24.7 4.0 30 19-48 5-34 (418)
350 COG0686 Ald Alanine dehydrogen 89.0 0.4 1E-05 25.9 3.0 18 233-250 183-200 (371)
351 COG1648 CysG Siroheme synthase 88.8 0.76 1.9E-05 24.1 4.4 31 19-49 14-44 (210)
352 PRK08293 3-hydroxybutyryl-CoA 88.8 0.87 2.2E-05 23.7 4.6 31 19-49 5-35 (288)
353 PRK09310 aroDE bifunctional 3- 88.7 0.79 2E-05 24.0 4.4 32 142-174 104-135 (477)
354 PRK06019 phosphoribosylaminoim 88.5 0.91 2.3E-05 23.6 4.6 32 19-50 9-40 (377)
355 pfam03721 UDPG_MGDP_dh_N UDP-g 88.5 0.87 2.2E-05 23.7 4.5 32 19-50 2-33 (185)
356 PRK01710 murD UDP-N-acetylmura 88.3 0.89 2.3E-05 23.7 4.4 32 19-50 16-47 (458)
357 PRK08229 2-dehydropantoate 2-r 88.2 1 2.7E-05 23.2 4.7 30 19-48 4-33 (341)
358 KOG1346 consensus 88.2 0.16 4E-06 28.6 0.5 56 366-434 464-521 (659)
359 pfam02737 3HCDH_N 3-hydroxyacy 88.1 1 2.6E-05 23.3 4.6 30 20-49 2-31 (180)
360 pfam02558 ApbA Ketopantoate re 87.9 0.98 2.5E-05 23.4 4.4 31 20-50 1-31 (150)
361 PRK07878 molybdopterin biosynt 87.8 1.2 3E-05 22.8 4.8 38 18-55 43-81 (392)
362 PRK12475 thiamine/molybdopteri 87.8 1.1 2.8E-05 23.1 4.6 38 18-55 25-63 (337)
363 PRK06522 2-dehydropantoate 2-r 87.8 1 2.7E-05 23.2 4.5 31 19-49 2-32 (307)
364 TIGR01421 gluta_reduc_1 glutat 87.6 0.32 8.1E-06 26.6 1.8 81 155-251 223-309 (475)
365 PRK06129 3-hydroxyacyl-CoA deh 87.5 1.1 2.9E-05 22.9 4.6 31 19-49 4-34 (308)
366 PRK07660 consensus 87.3 1.2 3.1E-05 22.8 4.6 31 19-49 5-35 (283)
367 PRK05600 thiamine biosynthesis 87.3 1.4 3.6E-05 22.3 5.0 38 18-55 42-80 (370)
368 PRK05690 molybdopterin biosynt 87.3 1.6 4.1E-05 22.0 5.2 38 18-55 33-71 (245)
369 PRK05808 3-hydroxybutyryl-CoA 87.0 1.3 3.3E-05 22.6 4.6 31 19-49 5-35 (282)
370 cd01065 NAD_bind_Shikimate_DH 87.0 1 2.6E-05 23.2 4.1 32 18-49 20-52 (155)
371 PRK07411 hypothetical protein; 86.9 1.5 3.9E-05 22.1 5.0 38 18-55 39-77 (390)
372 PRK06035 3-hydroxyacyl-CoA deh 86.9 1.3 3.3E-05 22.6 4.6 31 19-49 5-35 (291)
373 cd01487 E1_ThiF_like E1_ThiF_l 86.9 1.7 4.2E-05 21.9 5.1 35 20-54 2-37 (174)
374 PRK09260 3-hydroxybutyryl-CoA 86.9 1.3 3.3E-05 22.6 4.6 31 19-49 4-34 (289)
375 COG1748 LYS9 Saccharopine dehy 86.8 1.4 3.5E-05 22.4 4.7 32 19-50 3-35 (389)
376 PRK08644 thiamine biosynthesis 86.8 1.3 3.4E-05 22.5 4.6 39 17-55 27-66 (209)
377 PRK07688 thiamine/molybdopteri 86.8 1.3 3.3E-05 22.6 4.6 38 18-55 25-63 (339)
378 PRK05329 anaerobic glycerol-3- 86.8 0.44 1.1E-05 25.7 2.1 60 153-216 261-320 (425)
379 PRK12815 carB carbamoyl phosph 86.8 1.3 3.2E-05 22.6 4.5 32 19-50 9-51 (1068)
380 PRK08762 molybdopterin biosynt 86.7 1.5 3.8E-05 22.2 4.8 20 198-217 131-150 (379)
381 PRK05447 1-deoxy-D-xylulose 5- 86.6 0.99 2.5E-05 23.4 3.8 28 20-47 4-34 (379)
382 PRK07530 3-hydroxybutyryl-CoA 86.4 1.5 3.7E-05 22.3 4.6 31 19-49 6-36 (292)
383 PRK05294 carB carbamoyl phosph 86.3 1.4 3.7E-05 22.3 4.6 32 19-50 9-51 (1063)
384 PRK06130 3-hydroxybutyryl-CoA 86.3 1.6 4E-05 22.1 4.7 31 19-49 7-37 (310)
385 pfam02254 TrkA_N TrkA-N domain 86.2 1.2 3.1E-05 22.8 4.1 31 20-51 1-31 (115)
386 cd00757 ThiF_MoeB_HesA_family 86.0 2 5.2E-05 21.3 5.2 39 17-55 21-60 (228)
387 PRK02705 murD UDP-N-acetylmura 85.7 1.5 3.9E-05 22.1 4.4 31 20-50 3-33 (459)
388 COG0569 TrkA K+ transport syst 85.7 1.6 4E-05 22.1 4.5 32 19-50 2-33 (225)
389 PRK09117 consensus 85.7 1.7 4.3E-05 21.8 4.7 31 19-49 4-34 (282)
390 cd00755 YgdL_like Family of ac 85.6 1.6 4E-05 22.0 4.5 39 17-55 11-50 (231)
391 TIGR01137 cysta_beta cystathio 85.5 0.83 2.1E-05 23.9 3.0 171 24-242 72-295 (527)
392 PRK11064 wecC UDP-N-acetyl-D-m 85.4 1.9 4.8E-05 21.5 4.8 32 19-50 5-36 (415)
393 PRK08223 hypothetical protein; 85.3 2.1 5.2E-05 21.3 5.0 39 17-55 27-66 (287)
394 PRK12862 malic enzyme; Reviewe 85.1 1.1 2.7E-05 23.1 3.4 27 24-50 45-79 (761)
395 PRK09496 trkA potassium transp 85.0 1.8 4.6E-05 21.7 4.5 33 19-51 2-34 (455)
396 PRK00258 aroE shikimate 5-dehy 84.9 1.5 3.8E-05 22.2 4.1 10 208-217 125-134 (275)
397 PRK07819 3-hydroxybutyryl-CoA 84.9 1.9 4.8E-05 21.5 4.6 31 19-49 4-34 (284)
398 TIGR03026 NDP-sugDHase nucleot 84.8 1.8 4.5E-05 21.7 4.4 32 19-50 2-33 (411)
399 PRK07232 malic enzyme; Reviewe 84.8 1.3 3.3E-05 22.6 3.7 26 25-50 40-73 (753)
400 PRK12921 2-dehydropantoate 2-r 84.7 1.9 5E-05 21.4 4.6 31 19-49 2-32 (306)
401 PRK06463 fabG 3-ketoacyl-(acyl 84.7 2.6 6.7E-05 20.6 7.3 29 20-48 9-39 (254)
402 COG0169 AroE Shikimate 5-dehyd 84.7 2.1 5.3E-05 21.3 4.7 19 339-357 255-273 (283)
403 pfam00899 ThiF ThiF family. Th 84.5 2.6 6.6E-05 20.6 5.2 37 19-55 3-40 (134)
404 PRK05708 2-dehydropantoate 2-r 84.2 1.9 4.7E-05 21.6 4.3 30 19-48 4-33 (305)
405 pfam00670 AdoHcyase_NAD S-aden 84.1 1.2 2.9E-05 22.9 3.2 36 18-53 24-59 (162)
406 COG0771 MurD UDP-N-acetylmuram 83.2 1.7 4.3E-05 21.8 3.8 34 19-52 9-42 (448)
407 PRK06841 short chain dehydroge 83.2 3.1 7.8E-05 20.1 7.9 31 20-50 17-49 (255)
408 PRK08268 3-hydroxybutyryl-CoA 82.4 2.7 6.9E-05 20.5 4.6 32 19-50 5-36 (503)
409 PRK08328 hypothetical protein; 82.4 2.3 5.9E-05 21.0 4.2 39 17-55 27-66 (230)
410 COG0026 PurK Phosphoribosylami 82.3 3.3 8.4E-05 19.9 5.3 32 19-50 3-34 (375)
411 TIGR02355 moeB molybdopterin s 82.2 1.9 4.9E-05 21.5 3.8 38 18-55 25-63 (240)
412 PRK05597 molybdopterin biosynt 81.9 3.4 8.7E-05 19.8 5.0 38 18-55 29-67 (355)
413 PRK12550 shikimate 5-dehydroge 81.6 3 7.6E-05 20.2 4.5 17 341-357 247-263 (272)
414 PRK06057 short chain dehydroge 81.6 3.5 8.9E-05 19.8 7.0 30 20-49 9-40 (255)
415 PRK12548 shikimate 5-dehydroge 81.3 2.5 6.5E-05 20.7 4.1 12 207-218 128-139 (289)
416 PRK12549 shikimate 5-dehydroge 81.2 2.6 6.6E-05 20.6 4.1 11 207-217 129-139 (284)
417 PRK05872 short chain dehydroge 81.2 3.6 9.2E-05 19.7 5.3 31 19-49 10-42 (296)
418 cd01483 E1_enzyme_family Super 81.1 3.6 9.3E-05 19.7 5.2 37 19-55 1-38 (143)
419 TIGR00745 apbA_panE 2-dehydrop 81.1 2.8 7.1E-05 20.4 4.2 30 20-49 2-33 (332)
420 COG1004 Ugd Predicted UDP-gluc 80.7 3 7.5E-05 20.2 4.2 32 19-50 2-33 (414)
421 PRK06483 short chain dehydroge 80.7 3.8 9.6E-05 19.6 6.1 31 19-49 4-35 (236)
422 PRK08306 dipicolinate synthase 80.5 3.4 8.7E-05 19.8 4.5 30 18-47 3-32 (296)
423 PRK07066 3-hydroxybutyryl-CoA 80.3 3.5 9E-05 19.7 4.5 31 19-49 9-39 (321)
424 pfam01488 Shikimate_DH Shikima 79.9 3.6 9.2E-05 19.7 4.5 33 17-49 12-45 (134)
425 pfam01210 NAD_Gly3P_dh_N NAD-d 79.8 4 0.0001 19.4 4.9 32 19-50 2-33 (159)
426 cd01485 E1-1_like Ubiquitin ac 79.4 4.1 0.0001 19.3 5.2 39 17-55 19-58 (198)
427 PRK04690 murD UDP-N-acetylmura 79.4 3.4 8.7E-05 19.8 4.2 29 19-47 10-38 (468)
428 cd01078 NAD_bind_H4MPT_DH NADP 79.1 4.2 0.00011 19.2 4.7 31 18-48 29-60 (194)
429 cd01484 E1-2_like Ubiquitin ac 78.5 4.4 0.00011 19.1 4.7 36 20-55 2-38 (234)
430 PRK08589 short chain dehydroge 78.5 4.4 0.00011 19.1 8.0 29 20-48 9-38 (272)
431 PRK00421 murC UDP-N-acetylmura 78.1 3.6 9.2E-05 19.7 4.0 30 19-48 10-40 (459)
432 PRK12749 quinate/shikimate deh 78.1 3.8 9.7E-05 19.5 4.2 12 207-218 126-137 (288)
433 cd01492 Aos1_SUMO Ubiquitin ac 77.5 4.7 0.00012 18.9 4.8 39 17-55 21-60 (197)
434 COG4716 Myosin-crossreactive a 77.1 1.1 2.7E-05 23.2 1.1 61 155-216 228-290 (587)
435 PRK00784 cobyric acid synthase 77.0 0.42 1.1E-05 25.8 -1.0 21 26-46 16-38 (492)
436 PRK12464 1-deoxy-D-xylulose 5- 76.9 2.7 7E-05 20.5 3.2 13 208-220 91-103 (392)
437 cd01489 Uba2_SUMO Ubiquitin ac 76.9 4.9 0.00012 18.8 4.9 36 20-55 2-38 (312)
438 TIGR00562 proto_IX_ox protopor 76.8 4.6 0.00012 19.0 4.3 38 17-54 2-45 (556)
439 PTZ00079 NADP-specific glutama 76.7 4.9 0.00013 18.8 4.7 20 518-537 445-464 (469)
440 PRK03815 murD UDP-N-acetylmura 76.6 4 0.0001 19.4 3.9 30 19-48 2-31 (401)
441 COG1893 ApbA Ketopantoate redu 76.0 5.1 0.00013 18.7 4.4 30 19-48 2-31 (307)
442 PRK07531 bifunctional 3-hydrox 76.0 5.1 0.00013 18.7 4.5 32 19-50 4-35 (489)
443 cd01486 Apg7 Apg7 is an E1-lik 75.4 3.7 9.3E-05 19.6 3.4 36 20-55 2-38 (307)
444 TIGR01763 MalateDH_bact malate 74.7 3.7 9.5E-05 19.6 3.4 29 20-48 4-34 (308)
445 PRK04663 murD UDP-N-acetylmura 74.3 4.1 0.00011 19.3 3.5 27 19-45 9-35 (438)
446 pfam05221 AdoHcyase S-adenosyl 73.8 3.4 8.6E-05 19.9 3.0 34 202-248 206-240 (430)
447 cd00401 AdoHcyase S-adenosyl-L 73.7 3.6 9.1E-05 19.7 3.1 34 202-248 198-232 (413)
448 COG1251 NirB NAD(P)H-nitrite r 73.6 5.1 0.00013 18.7 3.8 48 160-214 193-240 (793)
449 COG0743 Dxr 1-deoxy-D-xylulose 73.6 2.6 6.6E-05 20.6 2.3 11 470-480 343-353 (385)
450 PRK06197 short chain dehydroge 73.5 5.9 0.00015 18.3 4.3 48 1-50 1-50 (306)
451 PRK09414 glutamate dehydrogena 72.9 6.1 0.00016 18.2 4.8 19 519-537 423-441 (446)
452 COG1492 CobQ Cobyric acid synt 72.6 0.7 1.8E-05 24.3 -0.8 10 37-46 27-36 (486)
453 PRK10637 cysG siroheme synthas 72.5 6.2 0.00016 18.1 4.4 33 18-50 13-45 (457)
454 PRK06567 putative bifunctional 72.2 4.1 0.00011 19.3 3.1 40 8-47 392-431 (1048)
455 PRK11730 fadB multifunctional 71.9 6.4 0.00016 18.0 4.1 69 26-116 35-105 (715)
456 cd01075 NAD_bind_Leu_Phe_Val_D 71.7 6.5 0.00017 18.0 4.6 28 19-46 30-57 (200)
457 PRK07890 short chain dehydroge 71.5 6.6 0.00017 18.0 8.0 30 20-49 8-38 (258)
458 PRK05476 S-adenosyl-L-homocyst 71.1 3.7 9.5E-05 19.6 2.6 34 202-248 204-238 (427)
459 PTZ00075 S-adenosyl-L-homocyst 70.5 3.5 9E-05 19.7 2.4 34 202-248 250-284 (476)
460 PRK04940 hypothetical protein; 70.5 6.1 0.00016 18.2 3.6 31 18-48 60-90 (179)
461 COG1064 AdhP Zn-dependent alco 70.0 7.1 0.00018 17.8 4.6 24 414-437 280-303 (339)
462 COG0281 SfcA Malic enzyme [Ene 69.8 7.1 0.00018 17.7 4.4 18 530-547 389-406 (432)
463 cd05191 NAD_bind_amino_acid_DH 69.7 6.6 0.00017 18.0 3.7 31 18-48 24-55 (86)
464 PRK11154 fadJ multifunctional 69.6 6.2 0.00016 18.1 3.5 103 402-505 444-557 (706)
465 pfam06408 consensus 69.2 7.4 0.00019 17.7 4.2 93 19-116 3-103 (471)
466 COG1179 Dinucleotide-utilizing 68.2 7.7 0.0002 17.5 4.1 39 17-55 30-69 (263)
467 TIGR02279 PaaC-3OHAcCoADH 3-hy 67.8 5.7 0.00015 18.4 3.0 33 17-49 5-37 (508)
468 cd05211 NAD_bind_Glu_Leu_Phe_V 67.8 7.9 0.0002 17.5 4.7 31 18-48 24-54 (217)
469 PRK07831 short chain dehydroge 66.8 8.2 0.00021 17.3 4.6 31 19-49 18-50 (261)
470 PRK07326 short chain dehydroge 66.8 8.2 0.00021 17.3 7.9 30 20-49 7-38 (235)
471 PRK06484 short chain dehydroge 66.7 8.3 0.00021 17.3 7.3 30 20-49 7-38 (530)
472 PRK06505 enoyl-(acyl carrier p 66.2 8.4 0.00021 17.3 4.7 30 20-49 10-42 (271)
473 PRK06171 sorbitol-6-phosphate 65.3 8.8 0.00022 17.2 7.6 39 12-50 3-43 (266)
474 PRK05693 short chain dehydroge 65.1 8.8 0.00022 17.1 7.7 30 20-49 4-34 (274)
475 TIGR00518 alaDH alanine dehydr 64.9 4.8 0.00012 18.9 2.2 36 11-52 7-42 (372)
476 KOG1371 consensus 64.8 8.5 0.00022 17.3 3.4 31 19-49 4-35 (343)
477 pfam05728 UPF0227 Uncharacteri 64.7 9 0.00023 17.1 3.9 30 19-48 60-89 (187)
478 PRK08017 short chain dehydroge 64.6 9 0.00023 17.1 8.1 30 20-49 5-35 (256)
479 pfam01884 PcrB PcrB family. Th 64.0 6.1 0.00015 18.2 2.6 15 320-334 156-175 (231)
480 PRK12481 2-deoxy-D-gluconate 3 63.6 9.4 0.00024 17.0 7.2 31 19-49 9-41 (251)
481 pfam00289 CPSase_L_chain Carba 63.3 9.5 0.00024 16.9 4.5 29 19-47 3-31 (109)
482 PRK04169 geranylgeranylglycery 63.3 6.6 0.00017 18.0 2.6 20 223-242 87-106 (229)
483 PRK07417 arogenate dehydrogena 63.2 9.6 0.00024 16.9 4.2 30 19-48 3-32 (280)
484 TIGR02632 RhaD_aldol-ADH rhamn 63.1 5.9 0.00015 18.3 2.4 98 321-435 492-592 (709)
485 cd05313 NAD_bind_2_Glu_DH NAD( 62.7 9.8 0.00025 16.9 4.9 41 20-64 41-81 (254)
486 PRK01368 murD UDP-N-acetylmura 62.6 9.8 0.00025 16.8 3.6 26 20-45 9-34 (450)
487 COG0499 SAM1 S-adenosylhomocys 62.6 8.6 0.00022 17.2 3.1 32 20-51 212-243 (420)
488 PRK12859 3-ketoacyl-(acyl-carr 62.1 10 0.00026 16.8 4.0 27 20-46 9-38 (257)
489 COG0421 SpeE Spermidine syntha 62.0 8.4 0.00021 17.3 3.0 28 20-47 80-107 (282)
490 TIGR01087 murD UDP-N-acetylmur 61.0 10 0.00027 16.7 3.4 31 20-50 2-34 (476)
491 PRK08594 enoyl-(acyl carrier p 61.0 10 0.00027 16.7 4.4 27 20-46 9-38 (256)
492 PRK08340 glucose-1-dehydrogena 60.6 11 0.00027 16.6 4.8 30 20-49 3-33 (259)
493 TIGR01035 hemA glutamyl-tRNA r 60.5 11 0.00027 16.6 4.0 27 20-46 188-215 (436)
494 PRK07825 short chain dehydroge 60.2 11 0.00028 16.6 6.0 147 20-171 7-175 (273)
495 PRK05786 fabG 3-ketoacyl-(acyl 59.9 11 0.00028 16.5 4.6 31 20-50 8-39 (238)
496 PRK08277 D-mannonate oxidoredu 59.9 11 0.00028 16.5 4.4 40 7-48 2-42 (278)
497 PRK02947 hypothetical protein; 59.5 11 0.00028 16.5 4.7 29 19-47 109-141 (247)
498 KOG2304 consensus 59.4 9.8 0.00025 16.8 3.0 28 20-47 14-41 (298)
499 TIGR01809 Shik-DH-AROM shikima 59.3 11 0.00028 16.5 3.8 30 21-50 134-164 (291)
500 PRK08628 short chain dehydroge 59.3 11 0.00029 16.5 8.7 147 20-171 9-178 (258)
No 1
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=100.00 E-value=0 Score=1455.54 Aligned_cols=586 Identities=56% Similarity=0.900 Sum_probs=555.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHCCCCEEEECC-CCC-CCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 5889899689999999999889---8299998689885210411653425137-899-9999999998998458877999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLA-NMT-PDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G---~~V~lieK~~~~~g~s~~A~GGi~a~~~-~~~-~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
||||||+|+|||+||+++++.| ++|+||+|.++.||||++|||||+|++. +.+ +|||++|++||+|+||||||||
T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD 80 (636)
T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD 80 (636)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 97888186689999999973577961079995569885201535678999957786432072123041101442132589
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC---------------------CCCEEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 999999988999999998699813279---------------------98551001464114567876564079866654
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNE---------------------AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRT 152 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~---------------------~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~t 152 (611)
.|++||+++|+.|-+||+||+||+|.+ ||.++||+||||+..++ +.+..|+||++|+|
T Consensus 81 Ave~~~~~AP~~v~eLe~wG~PfSR~~kGDRmaiinaqkttiteeDfRDG~IaQR~FGG~~~~~G-g~~a~RTcyAADkT 159 (636)
T TIGR01812 81 AVEYMCKEAPKAVLELERWGVPFSRLPKGDRMAIINAQKTTITEEDFRDGRIAQRPFGGASFDYG-GAAARRTCYAADKT 159 (636)
T ss_pred HHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCEEECCCCCCCCCCC-CCHHHHHHHHHCCC
T ss_conf 99999851517899997378985678677647776245420020115588353437888886556-62221342001211
Q ss_pred CHHHHHHHHHHHHHC-CCEEECCCEEEEEEECCCC--CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCC-CCCCCCE
Q ss_conf 266789999998731-2303113156520001344--30124689805870899506724741576565433-4210640
Q gi|254781043|r 153 GHAILHTLYGQALKN-NAEFFIEYFALDLIINSEG--CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYF-SATSAHT 228 (611)
Q Consensus 153 G~~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~dG--~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~-~~t~~~~ 228 (611)
|+.|+++|++++++. +|+|+.++++++|++|+++ +|.|+|++|+.+|+++.|+||+||||||||||+|+ .|||+..
T Consensus 160 Gh~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~GR~Y~~~tTNa~~ 239 (636)
T TIGR01812 160 GHALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRVYKFTTTNAHI 239 (636)
T ss_pred CHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCCHHHHCCCCCCCEE
T ss_conf 31478989999853799427538888778874589867999999980588089996074898306510210304454422
Q ss_pred ECCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCC--CC---CCCCCCCCCCEEHH
Q ss_conf 144488788751365-3333222328884422014304566557808983268612554--07---65100475201115
Q gi|254781043|r 229 CTGDGAGMVARAGLP-LQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMER--YA---PSAKDLASRDVVSR 302 (611)
Q Consensus 229 ~tGdG~~mA~~aGa~-l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~--y~---~~~~el~~rd~~s~ 302 (611)
|||||++||||+|.. |.||||||||||||+++|+||||++|||||||+|++|||||++ |+ |..+||||||||||
T Consensus 240 ~TGDG~A~AlraG~PqL~DMEFvQFHPTGL~~sGiL~tEgcRGEGGyL~N~~GeRFM~ryGYAPetP~k~eLApRDvVSR 319 (636)
T TIGR01812 240 NTGDGLAMALRAGVPQLKDMEFVQFHPTGLAPSGILITEGCRGEGGYLINKEGERFMERYGYAPETPEKMELAPRDVVSR 319 (636)
T ss_pred ECCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 35406888887346431684405036745566771774013327616867875310344688878875000478769999
Q ss_pred HHHHHHHHCCCCC--CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCE-EEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 6889988178888--88874688611179899999853799999764367865440-67520331001234215771585
Q gi|254781043|r 303 CMMMEIREGRGVG--KSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDP-IPVIPTVHYNMGGIPTNYWGEVL 379 (611)
Q Consensus 303 ai~~ei~~g~g~~--~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~-i~v~p~~hy~~GGi~vd~~g~v~ 379 (611)
||..||+||||+. .++.+|||||+||++|.|++|||.+.|.++.|.|+||.++| |||.|++||+||||.||.+|||.
T Consensus 320 a~~~EireGRGv~~~~~k~~v~LDLrHLGee~i~~RLP~i~E~A~~f~GVDPv~~pWiPVrPt~HY~MGGI~T~~~G~~~ 399 (636)
T TIGR01812 320 AMVTEIREGRGVGSGPGKDYVYLDLRHLGEEKIEERLPQIRELAKTFAGVDPVKEPWIPVRPTAHYSMGGIDTNYRGQVI 399 (636)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEHHHCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEE
T ss_conf 99999984488898878877887640134788852075689999970488830057626456444118278445842487
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHH
Q ss_conf 377888533227603402122033566430476432222223215677556654202656----6764002357888631
Q gi|254781043|r 380 DANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPI----PSLDISSCDRIMDRFD 455 (611)
Q Consensus 380 ~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~----~~~~~~~~~~~~~~~~ 455 (611)
..++++..+.|+||||||||||.|||||||||||||+|++||||+||.++++++.+.... +....+..+.....+.
T Consensus 400 ~~D~~~~~~iv~GLfAaGE~ACVSVHGANRLGsNSLle~vVFGr~aG~~~ae~~~~~~~~neL~~~~~~~~~~~~~~~~~ 479 (636)
T TIGR01812 400 GEDAKNNDSIVKGLFAAGECACVSVHGANRLGSNSLLELVVFGRIAGEAAAEYLAKTGVDNELAADLEEEEVKKEEALID 479 (636)
T ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 01678888621010220102220341213060567999999979999999999860688631133454458999999999
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0103-788713689998788766509726875899999999999999998-41515787754588999999888899999
Q gi|254781043|r 456 RLRH-ADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEM-ADLKVHDRSLIWNSDLVETLELQNLMINA 533 (611)
Q Consensus 456 ~~~~-~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~-~~i~~~d~~~~~n~el~~~~el~~~l~~A 533 (611)
.+.+ .++++.+++||++||.+||+||||+|+++.|++|+++|.+|+++. .+|.+.|+++.||+||++++||+|||++|
T Consensus 480 ~~~~~~~~~~~~a~ir~~l~~~M~~~~gvFR~~~~l~~a~~~i~eL~eR~~~~v~i~DKs~~fNTdL~~AlEL~nlL~lA 559 (636)
T TIGR01812 480 LLKEEGNGGERVAQIREELQETMEANVGVFRTEELLKKAVDEIEELRERRYKNVKINDKSKVFNTDLLEALELGNLLDLA 559 (636)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCEECHHHHHHHHHHHHHHHH
T ss_conf 73036788735799999998886658579877322788999999986100164567405421236688899776458999
Q ss_pred HHHHHHHHCCCCCCCCEECCCCC--CCCCCCCCCHHHCEEEEEEEECC---CCEEEEEEECCCCCCCCCCCCEEECCCCC
Q ss_conf 99999996262550462353377--88766688032135699998468---98059999447444256755000027721
Q gi|254781043|r 534 IATVYSAEARKESRGSHAREDFK--DGEFGGRDDVNWRKHSLCWVDWN---TGKIKLDYRPVHTELLCGGVDYSKIAPKA 608 (611)
Q Consensus 534 e~~~~aal~R~ESRG~H~R~DyP--e~~~~~rDD~nwl~h~~~~~~~~---~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~ 608 (611)
++++.|||.|+||||+|+|+||| + |||+||||||+++++.+ .+.+++.|+||.+..+..- .++-|+|+.
T Consensus 560 ev~a~gAl~R~ESRGAH~ReDyPCt~-----RDD~NwlkHTla~~~~~~d~~~~~~l~Y~pV~~~~~~~a-r~~Ay~P~~ 633 (636)
T TIGR01812 560 EVVAAGALNRKESRGAHAREDYPCTE-----RDDENWLKHTLAYYDNNEDKEGTPKLEYKPVTITKLEIA-RVSAYEPKE 633 (636)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCC-----CCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE-ECCCCCCCC
T ss_conf 99999976085466777513488777-----673136642035378886634560255521312332010-005658777
Q ss_pred CCC
Q ss_conf 679
Q gi|254781043|r 609 RVY 611 (611)
Q Consensus 609 R~Y 611 (611)
|+|
T Consensus 634 R~Y 636 (636)
T TIGR01812 634 RKY 636 (636)
T ss_pred CCC
T ss_conf 889
No 2
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=100.00 E-value=0 Score=1418.24 Aligned_cols=590 Identities=62% Similarity=1.021 Sum_probs=579.5
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-CCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899-99999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-PDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
|+|||||||+|.|||+||+.+++.|.++.||+|..|.||||++|||||+|+|++.+ +|+|+||++||+|+||||.|||.
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA 80 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA 80 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 94227988687568999998632792388983136886411223445788851778798863640310005652124689
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
+++||+++|++|-+||+||+||+|+++|+|+||+||||+..++++..+.|+|+++||||++|+++||++..|.++.+|.+
T Consensus 81 iE~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~E 160 (615)
T TIGR01816 81 IEYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFNE 160 (615)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 98862313577876652777978888983320778697521156332324200014202579999876664318744750
Q ss_pred CEEEEEEECCCCC----CEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 1565200013443----012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 175 YFALDLIINSEGC----CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 175 ~~~~~Li~d~dG~----V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
+.++|||+++||. |+|||++++.||+++.|+||+|||||||+||+|+.+||+..+||||++|.+|||.+|+||||+
T Consensus 161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlPlqDmEF~ 240 (615)
T TIGR01816 161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLPLQDMEFW 240 (615)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 22110465257895887998898760588888995410789737864056766445655213688887268871132231
Q ss_pred CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf 32888442201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r 251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330 (611)
Q Consensus 251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~ 330 (611)
||||||+++.|+||||++|||||+|+|++|||||++|+|.-++|||||||||+|..||.||||+++.+++|||+++||++
T Consensus 241 QFHPTGiagaG~LiTEG~RGEGG~L~Na~GERFMERYAP~~KDLAsRDvVaRsM~~Ei~EGRGvG~~KDhV~l~l~HLg~ 320 (615)
T TIGR01816 241 QFHPTGIAGAGVLITEGVRGEGGILLNANGERFMERYAPTAKDLASRDVVARSMTLEIREGRGVGPNKDHVYLKLDHLGE 320 (615)
T ss_pred CCCHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCH
T ss_conf 23703341087267501214775524688751020016751003686364662588764178969675889886134885
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL 410 (611)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl 410 (611)
|.|.++||.|.|+.+.|+|+||.|+||||.||+||.||||+||++|+||..++++....||||||||||||.|+||||||
T Consensus 321 E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~GE~ACvSVHGANRL 400 (615)
T TIGR01816 321 EVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAGEAACVSVHGANRL 400 (615)
T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCC
T ss_conf 78865287754899986388851078689886341576732156434886424789861023766424520000253202
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r 411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL 490 (611)
Q Consensus 411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L 490 (611)
|+|||++.+||||.||.+++++++.+.+.++...+..+....++..+...++++++++||++||+.|+.|+||+|+++-|
T Consensus 401 GtNSLLDLVVFGR~ag~~~~~~~ke~~~~~~~~~n~~e~~~~~~~~l~~~~g~~~va~lR~~LQ~smq~~~gVFRt~~~l 480 (615)
T TIGR01816 401 GTNSLLDLVVFGRAAGLSAAEYIKEGSDFKPLPENAEEESVKRLDDLREATGNERVADLRRELQRSMQNHAGVFRTGELL 480 (615)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECHHHH
T ss_conf 11245578898899999999971377787787977088999998766411587027899999888886150564546789
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH----
Q ss_conf 9999999999999841515787754588999999888899999999999962625504623533778876668803----
Q gi|254781043|r 491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV---- 566 (611)
Q Consensus 491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~---- 566 (611)
++++.+|.+|+++++++.+.|++.+||++|+++|||.|||++|++++.||.+||||||+|-|+|||+ |||+
T Consensus 481 ~~gv~~i~~l~~R~k~~~i~Dks~~~Nt~lvEALEL~nLl~~A~~T~~sA~~RKESRGAHAREDy~~-----RdD~ydys 555 (615)
T TIGR01816 481 QKGVGEISELKERYKNVKINDKSKVWNTDLVEALELDNLLEVAEATVVSAEARKESRGAHAREDYPE-----RDDEYDYS 555 (615)
T ss_pred HHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCC
T ss_conf 9999999998755641441005620056889998877799999999998862555688865566566-----67622245
Q ss_pred -------------HHCEEEEEEEECCC---CEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf -------------21356999984689---8059999447444256755000027721679
Q gi|254781043|r 567 -------------NWRKHSLCWVDWNT---GKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 567 -------------nwl~h~~~~~~~~~---g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
||+|||+++.+..+ |+..++|+||+...++.. .++.+||+.|+|
T Consensus 556 kpi~G~~kkpfeenW~kHTl~y~d~g~dk~G~~~~~yk~V~~kp~~~~-~~~t~PP~~R~Y 615 (615)
T TIGR01816 556 KPIQGQQKKPFEENWLKHTLAYKDIGADKEGKVLLSYKPVALKPLTVA-AFETVPPKKRVY 615 (615)
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHCCCCCCCCCC
T ss_conf 665554467612200210013353788888860111001222577555-440587875789
No 3
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1236.67 Aligned_cols=598 Identities=75% Similarity=1.238 Sum_probs=576.1
Q ss_pred CCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 00534413323105889899689999999999889829999868988521041165342513789999999999989984
Q gi|254781043|r 6 NLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKG 85 (611)
Q Consensus 6 ~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~ 85 (611)
.|-+.|++||+||||||||||+|||+||++|++.|++|+||+|..+.+|+|.+|||||++++++..+||++.|++||+++
T Consensus 1 ~~~~~~~~~d~e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~~~s~s~~AqGGi~aa~~~~~~Ds~~~h~~DTl~a 80 (598)
T PRK09078 1 AMMSAYKIIDHKYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKG 80 (598)
T ss_pred CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 98776665566379899995699999999998749907999788999985465410050333789999989999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 58877999999999988999999998699813279985510014641145678765640798666542667899999987
Q gi|254781043|r 86 SDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL 165 (611)
Q Consensus 86 g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~ 165 (611)
|+++||+++|+.++++++++|+||++|||+|+|+++|++.+++||||+..+..+++.+|+++++|.||++|+..|+++++
T Consensus 81 G~~l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~r~~dG~~~~~~~GGhs~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~ 160 (598)
T PRK09078 81 SDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGEGPPAQRTCAAADRTGHAILHTLYQQSL 160 (598)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 35768899999999989999999998599243289988612445643201357875047885067609999999999998
Q ss_pred HCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCC
Q ss_conf 31230311315652000134430124689805870899506724741576565433421064014448878875136533
Q gi|254781043|r 166 KNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQ 245 (611)
Q Consensus 166 ~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~ 245 (611)
+.+++++.++.+++||++++|+|+||++++..+|+++.|+||+|||||||++++|..+|||+.+||||++||+||||+|.
T Consensus 161 ~~~i~~~~~~~~~~li~~~~G~v~Gv~~~~~~~G~~~~i~AkaVILATGG~g~~y~~tTn~~~~TGdG~amA~raGA~l~ 240 (598)
T PRK09078 161 KHNAEFFIEYFALDLIMDDEGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQ 240 (598)
T ss_pred HCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 63987999889999998279859999999878995899970769988787776667776999875499999998498725
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 33222328884422014304566557808983268612554076510047520111568899881788888887468861
Q gi|254781043|r 246 DMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYL 325 (611)
Q Consensus 246 ~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~ 325 (611)
||||||||||+++++++|++|++||+|++|+|++|||||++|+|...||+|||++|++|+.||++|+|+...+++||||+
T Consensus 241 dmEfiQfhPT~~~~~~~LisE~~rg~G~~L~n~~GerFm~~y~p~~~ela~Rdvvsrai~~ei~~G~g~~~~~~~v~ld~ 320 (598)
T PRK09078 241 DMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKKDHIFLHL 320 (598)
T ss_pred CCHHHHHCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEH
T ss_conf 85787406774357761542103378508989998998544477520024420789999999985478767887479873
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r 326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH 405 (611)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h 405 (611)
+|++++.|.++||.+.+.++.+.|+|+.++||||.|++||+||||+||.+|||++..+.+.+|+||||||||||+|+|+|
T Consensus 321 ~~~~~~~l~~~~p~i~~~~~~~~giD~~~~~ipv~P~~Hy~mGGi~id~~g~V~~~~~~~~~T~IpGLyAaGE~a~~G~H 400 (598)
T PRK09078 321 DHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAIGEAACVSVH 400 (598)
T ss_pred HHCCHHHHHHHCHHHHHHHHHHCCCCCCCCCEECCCCCCEECCCEECCCCCCEEECCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 10898999887758999999966989877864511203440478621767604202578767434621112554446766
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 64304764322222232156775566542026566764002357888631010378871368999878876650972687
Q gi|254781043|r 406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFR 485 (611)
Q Consensus 406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R 485 (611)
||||||||||++|+|||++||++|+++++.....+.++.+..+...+++.++...++..++.+++++||++||+|+|++|
T Consensus 401 GANRLggnsLle~~VfGr~Ag~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R 480 (598)
T PRK09078 401 GANRLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPPLPKDACDKALDRFDRLRHANGSTPTAELRLKMQRTMQNDAAVFR 480 (598)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEC
T ss_conf 55220235688999999999999999863578888998778999999887653178987879999999999862168521
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 58999999999999999984151578775458899999988889999999999996262550462353377887666880
Q gi|254781043|r 486 TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD 565 (611)
Q Consensus 486 ~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD 565 (611)
++++|++++++|+.|++++.++.+.+++..||++|++++|+.||+.+|+++++|||+|+||||+|||+|||| |||
T Consensus 481 ~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~l~~a~el~nll~~A~~i~~aAl~R~ESRG~H~R~DyPe-----~dD 555 (598)
T PRK09078 481 TGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAREDFPD-----RDD 555 (598)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCC
T ss_conf 789999999999999999873676775522146799999999999999999999860654645424788999-----975
Q ss_pred HHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 3213569999846898059999447444256755000027721679
Q gi|254781043|r 566 VNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 566 ~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
+||+||+++|+ +++|+++++|+||+++.... +++.|||++|+|
T Consensus 556 ~~wl~h~~~~~-~~~g~~~~~~~pv~~~~~~~--~~~~~~p~~r~y 598 (598)
T PRK09078 556 ENWMKHTLAWV-DDKGKVTLDYRPVHLYTLTN--DVQYIPPKKRVY 598 (598)
T ss_pred HHHHCEEEEEE-CCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCC
T ss_conf 55532078898-79998789854651325677--653319957889
No 4
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=100.00 E-value=0 Score=1227.07 Aligned_cols=600 Identities=63% Similarity=1.078 Sum_probs=575.9
Q ss_pred CCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 00053441332310588989968999999999988982999986898852104116534251378999999999998998
Q gi|254781043|r 5 SNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIK 84 (611)
Q Consensus 5 ~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~ 84 (611)
|--|..||++||+|||||||||+|||+||++|++.|++|+||||+.+.+|||.+||||||+++++.++||++.|++||++
T Consensus 22 ~~~~~~~~~~~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlk 101 (622)
T PTZ00139 22 SRAKKPYPVIDHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVK 101 (622)
T ss_pred HHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 74045667657765879999669999999999976990899978899997489998778740678999998999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 45887799999999998899999999869981327998551001464114567876564079866654266789999998
Q gi|254781043|r 85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA 164 (611)
Q Consensus 85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~ 164 (611)
+|+++||+++|+.||++++++|+||++|||+|+|+++|++.+|.||||+..+..|++.+|+++++|.||+.|++.|.+++
T Consensus 102 aG~~l~d~~lv~~l~~~a~~~V~~Le~~Gv~f~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~ 181 (622)
T PTZ00139 102 GSDWLGDQDAIHYMCKEAPCAVSELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCCAAADRTGHAMLHTLYGQS 181 (622)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 62687799999999998999999999779972257998781215677203466787415788757861999999999999
Q ss_pred HHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf 73123031131565200013443012468980587089950672474157656543342106401444887887513653
Q gi|254781043|r 165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l 244 (611)
++.+|.++.++.+++||++++|+|+||++++.++|+++.|+||+|||||||++++|..+||++.+||||++||+++||.|
T Consensus 182 ~~~~i~~~~~~~~~~ll~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tTn~~~~TGdG~amA~raGA~l 261 (622)
T PTZ00139 182 LQYNCNFFIEYFCLDLIMDEDGCCRGVVAMSIADGTIHRFRSKYTVIATGGYGRAYFSCTSAHSCTGDGNAMVARAGLPA 261 (622)
T ss_pred HHCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 86599799988999999758995999999977899099997136998778754334255689987719999999859870
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 33322232888442201430456655780898326861255407651004752011156889988178888888746886
Q gi|254781043|r 245 QDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLY 324 (611)
Q Consensus 245 ~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld 324 (611)
+||||||||||+++++++|++|++||+||+|+|++|||||++|+|...||+|||+++++|..|+.+|||+....++||+|
T Consensus 262 ~dmEfiQfhPt~~~~~~~LisEa~rGeGg~Lvn~~GerFm~~y~p~~~ela~RDvvsrai~~ei~~grg~~~~~~~v~ld 341 (622)
T PTZ00139 262 EDLEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPKAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLQ 341 (622)
T ss_pred CCCCHHHCCCCCCCCCCCEECHHHCCCCCEEECCCCCCCHHCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 58225310466446864031032026774766137874410037521220204689999999998557877887647864
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 11179899999853799999764367865440675203310012342157715853778885332276034021220335
Q gi|254781043|r 325 LNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASV 404 (611)
Q Consensus 325 ~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~ 404 (611)
++|++++.++++||.+.+.+..+.|+|+.++||||.|++||+||||+||.++||++..+.+.+|+||||||||||+|+|+
T Consensus 342 ~~~~~~e~~~~~~p~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGGi~id~~~~vl~~~~~~~~t~I~GLyAaGEva~gGv 421 (622)
T PTZ00139 342 LTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKGEVITQRNNGDDAIVPGLYAAGEAACASV 421 (622)
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 36799999987631289999985189975674010232053367765567752630247886730468423236565775
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 66430476432222223215677556654202656676400235788863101037887136899987887665097268
Q gi|254781043|r 405 HGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVF 484 (611)
Q Consensus 405 hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~ 484 (611)
|||||||||||++|+|||++||++|+++.+.....+....+..+....++..+...++..++.+++++||++||+|+||+
T Consensus 422 HGANRLggnsLle~~VfGr~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~iM~~~~gi~ 501 (622)
T PTZ00139 422 HGANRLGANSLLDIVVFGKSAANTVFELTKPGRKQPDLPANAGEASIARLDRIRHNKGDIPTAQIRLRMQKTMQKHAAVF 501 (622)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 67743677889999998999999999764258988889741789999888777505899789999999999998436879
Q ss_pred ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 75899999999999999998415157877545889999998888999999999999626255046235337788766688
Q gi|254781043|r 485 RTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRD 564 (611)
Q Consensus 485 R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rD 564 (611)
|++++|++++++|+.|++++.++.+.+.+..||++|++++|+.||+.+|+++++|||+|+||||+|||+|||| ||
T Consensus 502 R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~n~~l~~a~El~n~l~~a~~i~~aAL~R~ESRG~H~R~DyPe-----rd 576 (622)
T PTZ00139 502 RIGESLQEGVEIIEECYSDFSDVRIHDKSLVWNTDLIEALELENLLTQAMQTIEGAEARKESRGAHARDDFPE-----RD 576 (622)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC
T ss_conf 9799999999999999999961714688732136799999999999999999999874624656333888898-----86
Q ss_pred CHHHCEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 03213569999846-898059999447444256755000027721679
Q gi|254781043|r 565 DVNWRKHSLCWVDW-NTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 565 D~nwl~h~~~~~~~-~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
|+||||||++|+.. ..|++++.|+||.++.+. .+++.|||+.|+|
T Consensus 577 DenWlkht~~~~~~~~~g~~~~~y~pv~~~~~~--~~~~~~~p~~r~y 622 (622)
T PTZ00139 577 DKNWMKHTLAYLDDAKQGKVRLAYRPVITETLD--NEMETIPPAKRVY 622 (622)
T ss_pred CHHHCCEEEEEECCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCC
T ss_conf 611303152784468888505885035245667--7633469978889
No 5
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1164.81 Aligned_cols=584 Identities=53% Similarity=0.895 Sum_probs=549.0
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 33231058898996899999999998898299998689885210411653425137899999999999899845887799
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDV 92 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~ 92 (611)
+..++|||||||||+|||+||++|++.|++|+|++|..+.+|+|.+|||||++++++.++||++.|++||+++|+++|||
T Consensus 8 ~~~~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~~~s~s~~A~GGi~a~~~~~~~Ds~~~h~~DTl~~g~~l~d~ 87 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHFHFYDTIKGSDWLGDQ 87 (591)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 87447788999966999999999987699589997889999747887423525258999999899999999861677789
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999999889999999986998132799855100146411456787656407986665426678999999873123031
Q gi|254781043|r 93 DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF 172 (611)
Q Consensus 93 ~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~ 172 (611)
++|+.+|++++++|+||++||++|+|+++|.+.+++||||+..+. +.+++|+++.+|.||+.|+..|.+++++.+++++
T Consensus 88 ~~v~~l~~~a~~~i~~L~~~Gv~f~r~~dg~~~~r~~gGhs~~~g-~~~~~r~~~~~d~tG~~i~~~l~~~~~~~~v~~~ 166 (591)
T PRK07057 88 DAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG-EKPVQRACAAADRTGHALLHTLYQQNVAAKTQFF 166 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 999999998999999999869941017998782135677104456-7864245531677549999999999985298899
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r 173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 (611)
Q Consensus 173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf 252 (611)
.++.+++||++++|+|+||+++|..+|+++.|+||+|||||||++++|..+||++.+||||++||++|||.|.|||||||
T Consensus 167 ~~~~~~~ll~~~~G~v~Ga~~~~~~~g~~~~~~AkaVIlATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfiQf 246 (591)
T PRK07057 167 VEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQF 246 (591)
T ss_pred EEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHEE
T ss_conf 97789999874799699999997579909999833699878887666666679888560999999984997259256423
Q ss_pred CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 88844220143045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV 332 (611)
Q Consensus 253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~ 332 (611)
|||++.++++|++|++||+|++|+|++|||||++|+|..+||+|||+++++|+.|+++|+|+.+.+.+||||++|++.+.
T Consensus 247 hPt~~~~~~~Lise~~rg~G~~l~n~~GerFm~~y~p~~~elaprd~v~rai~~e~~~g~g~~~~~~~v~ld~~~~~~e~ 326 (591)
T PRK07057 247 HPTGVAGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNKDHVLLDLSHIGAET 326 (591)
T ss_pred CCCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECHHCCCCHHH
T ss_conf 14433687712047551489700367997954440750012004889999999999855787888761000030389999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r 333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS 412 (611)
Q Consensus 333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg 412 (611)
+.++||.+.+.++.+.++||.++||||.|++||+||||+||.+|+|++.. .+..|+||||||||||||+|+||||||||
T Consensus 327 ~~~~~~~~~~~~~~~~~iD~~~~~i~v~P~~Hy~mGGi~id~~g~v~~~~-~~~~~~I~GLyAaGEva~~G~HGANRLgg 405 (591)
T PRK07057 327 IMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTS-RDHKEPVNGFYAIGECSCVSVHGANRLGT 405 (591)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCEEECCCCEEEECC-CCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 97553699999998517776347654213444761788857874386337-77786317746432234678765534433
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 43222222321567755665420265667640023578886310103788713689998788766509726875899999
Q gi|254781043|r 413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSD 492 (611)
Q Consensus 413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~ 492 (611)
|||++|+|||++||++|++|++.....++.+.+..+....++..+....++.++.+++++||++||+|+||+|++++|++
T Consensus 406 nsL~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~ 485 (591)
T PRK07057 406 NSLLDLVVFGRAAGNHIVDHVKKQHEHKPLPADAADFSLARLAKLDKSTSGEYTQDVANDIRATMQKHAGVFRTSALLDE 485 (591)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHHH
T ss_conf 03889998899999999998761676689983367889998887764468988899999999999851578776999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEE
Q ss_conf 99999999999841515787754588999999888899999999999962625504623533778876668803213569
Q gi|254781043|r 493 GCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHS 572 (611)
Q Consensus 493 al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~ 572 (611)
++++|+.|++++.++.+.|.+..+|++|++++|++||+++|+++++|||+|+||||+|||+|||| |||+||||||
T Consensus 486 al~~l~~l~~~~~~~~~~d~~~~~n~~~~~~lEl~n~l~~a~~i~~aAl~R~ESRG~H~R~DyPe-----rdD~nwlkht 560 (591)
T PRK07057 486 GVEQILGLKERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYEH-----RDDENWLKHT 560 (591)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCEEE
T ss_conf 99999999999972785885400156779999999999999999999861554742236778887-----8571505578
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 999846898059999447444256755000027721679
Q gi|254781043|r 573 LCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 573 ~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
+++.+++ + +.|+||+. +.+++++|||++|+|
T Consensus 561 ~~~~~~~--~--~~~~~v~~----~~~~~~~~~p~~r~y 591 (591)
T PRK07057 561 LWYSEGD--R--LDYKPVQM----KPLTVESVPPKARTF 591 (591)
T ss_pred EEEECCC--C--CCCCCCEE----CCEEEEEECCCCCCC
T ss_conf 8997799--6--56665230----231777789834779
No 6
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1157.28 Aligned_cols=577 Identities=51% Similarity=0.841 Sum_probs=543.3
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
-+|+|||||||||+|||+||++|++ +.+|+||+|..+.+|+|.+|+|||++++++.++||++.|+.||+++|+++|||+
T Consensus 2 ~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~~~s~s~~a~gGi~a~~~~~~~Ds~e~~~~Dt~~aG~~l~d~~ 80 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQD 80 (583)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 7431788999962999999997156-997799978899997288886557402279999999999999998626877999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
+|+.++++++++|+||++||++|+|+++|++.+++||||++.... .+++|++|++|.||+.|++.|.+++++.+|++++
T Consensus 81 lv~~l~~~~~~~i~~Le~~Gv~f~r~~~G~~~~~~~gghs~~~g~-~~~~r~~~~~d~tG~~i~~~L~~~~~~~~i~~~~ 159 (583)
T PRK08205 81 AAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGK-APVRRACYAADRTGHMILQTLYQNCVKHGVEFFN 159 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCCCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999989999999997799730179987711243663345567-7630367506665099999999999877987997
Q ss_pred CCEEEEEEE---CCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 315652000---13443012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 174 EYFALDLII---NSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 174 ~~~~~~Li~---d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
++.+++||+ +++|+|+||++++..+|+++.|+||+|||||||++++|+.+||+..+||||++||+++||.|.||||+
T Consensus 160 ~~~~~~ll~~~~~~~g~v~Ga~~~d~~~g~~~~i~AkaVIlATGG~~~ly~~ttn~~~~tGdG~~mA~raGA~l~dmEfi 239 (583)
T PRK08205 160 EFYVLDLILTETPGGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFH 239 (583)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHE
T ss_conf 78999999988648982899999980799789997297998889875665565799885529999999869871682111
Q ss_pred CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf 32888442201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r 251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330 (611)
Q Consensus 251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~ 330 (611)
|||||++.+.++|++|++||+|++|+|++|+|||++|+|...||+|||+++++|+.|+++|||+..+...||||++|+++
T Consensus 240 Q~hPt~~~~~g~l~~e~~rgeGg~l~n~~GeRFm~~y~p~~~elaprd~va~ai~~ei~~grg~~~~~~~v~ld~~~l~~ 319 (583)
T PRK08205 240 QFHPTGLAGLGILISEAARGEGGILRNSEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNKDYVYLDLTHLGE 319 (583)
T ss_pred ECCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf 02563224677654652226885752668868010117211102650066698999987536877886500010025999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL 410 (611)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl 410 (611)
+.|+++||.+.+.++.+.|+||.++||||.|++||+||||.||.+++|++.. .|+||||||||||||+|+||||||
T Consensus 320 e~l~~~~~~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~id~~~~V~~~~----~T~I~GLyAaGEva~~GvHGaNRL 395 (583)
T PRK08205 320 EVLEAKLPDITEFARTYLGVDPVKELVPVYPTAHYAMGGIPTTVTGQVLRDN----TTVVPGLYAAGECACVSVHGANRL 395 (583)
T ss_pred HHHHHHCHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCEEECCCCEEECCC----CCCCCCCEECCCCCCCCCCCCCCH
T ss_conf 9998766059999998538986467347741344652578968887794579----976687554266553677887531
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r 411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL 490 (611)
Q Consensus 411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L 490 (611)
|||||++|+|||++||++|++|++..... ...........+.+..+....+..++.+++++||++||+|+|++|++++|
T Consensus 396 ggnsl~e~~VfGr~AG~~Aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~gi~R~~~~L 474 (583)
T PRK08205 396 GTNSLLDINVFGRRAGIAAAEYARGADFV-DLPEDPEAMVVGWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETL 474 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 56789999999999999999975128878-89730689999999887525789889999999999998616700389999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCE
Q ss_conf 99999999999998415157877545889999998888999999999999626255046235337788766688032135
Q gi|254781043|r 491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRK 570 (611)
Q Consensus 491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~ 570 (611)
++++++|+.|+++++++.+.|.+..||++|++++|++|||++|+++++|||+|+||||+|||+|||+ |||+||+|
T Consensus 475 ~~al~~l~~l~~~~~~~~~~d~~~~~n~dl~~~~E~~~~l~~a~~~~~aAl~R~ESRG~H~R~DyPe-----rDD~nwlk 549 (583)
T PRK08205 475 KQALTDIHALKERYSRITVQDKGKRFNSDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPN-----RDDVNYMR 549 (583)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCCCCCC
T ss_conf 9999999999999960843686533277899999999999999999999972643532103757798-----87614055
Q ss_pred EEEEEEECCC--CEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 6999984689--8059999447444256755000027721679
Q gi|254781043|r 571 HSLCWVDWNT--GKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 571 h~~~~~~~~~--g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
||++|++..+ +++++.|+|| ++++|+|++|+|
T Consensus 550 ht~~~~~~~~~~~~~~~~~~~v---------~~~~~~p~~r~y 583 (583)
T PRK08205 550 HTMAYREKTDLLSDIRLDYKPV---------VQTRYEPMERKY 583 (583)
T ss_pred EEEEEECCCCCCCCCEEEEECC---------EEEECCCCCCCC
T ss_conf 0788724888788754664134---------664149806889
No 7
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00 E-value=0 Score=1159.24 Aligned_cols=565 Identities=39% Similarity=0.580 Sum_probs=522.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC---CCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 105889899689999999999889829999868988521041165342513789---99999999998998458877999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM---TPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~---~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
+|||||||||+|||+||++|+++|++|+||+|.++.+|+|.+|||||++++++. .+||++.|+.||+++|+++|||+
T Consensus 5 ~tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~~~snS~~AqGGi~aalg~~~~~~~Ds~e~h~~DTlkgg~~~~d~~ 84 (657)
T PRK08626 5 YTDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQE 84 (657)
T ss_pred ECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 51689999659999999999975995799968889998647753377663034678999798999999998616888899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------------------EEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 999999988999999998699813279985---------------------51001464114567876564079866654
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGK---------------------IYQRPFGGHMQNYGEGPPVQRTCAAADRT 152 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~---------------------~~~~~~gg~~~~~~~g~~~~R~~~~~d~t 152 (611)
+|+.||+++|++|+||++|||||+|.++|. +..|.||||+ .+|++|.+|.|
T Consensus 85 ~v~~l~~~ap~~i~~L~~~Gvpf~r~~~G~~~~~~~~~~~~~~~~~~~~g~i~~r~fGG~s--------~~R~~~~~d~t 156 (657)
T PRK08626 85 VARMFAHTAPKAVRELANWGVPWTRVTAGPRTVVVNAQKVTIEEAEEAHGLINARDFGGTK--------KWRTCYTADGT 156 (657)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCE--------EEEEEECCCCC
T ss_conf 9999999899999999975998422667763211354322210000145621100258820--------11245238887
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCH
Q ss_conf 26678999999873123031131565200013443012468980587089950672474157656543342106401444
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGD 232 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGd 232 (611)
|+.|+.+|.+++++.+|++++++.+++||+| +|+|+||+++|.++|+++.|.||+|||||||++++|..+||++.+|||
T Consensus 157 G~~i~~~L~~~~~~~gV~i~~~~~~~~Li~d-~g~~~Gav~~d~~~G~~~~~~AkaVILATGG~g~ly~~tTN~~~~TGd 235 (657)
T PRK08626 157 GHTLLYAVDNEAISLGVPVHDRKEALALIHD-GKRCHGAVARCLITGELRAYVAKGTLIATGGYGRIYKVSTNAVICEGT 235 (657)
T ss_pred HHHHHHHHHHHHHHCCCEEECCEEEEEEEEE-CCEEEEEEEEECCCCCEEEEEECCEEEECCCCCCEEECCCCCCCCCCH
T ss_conf 7999999999999759949906299999998-999999999965789688986341899326666235523588886778
Q ss_pred HHHHHHHHC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC
Q ss_conf 887887513-6533332223288844220143045665578089832686125540765100475201115688998817
Q gi|254781043|r 233 GAGMVARAG-LPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG 311 (611)
Q Consensus 233 G~~mA~~aG-a~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g 311 (611)
|++||+++| |.|.||||||||||+++++++|++|++||+||+|+|++|+|||++|+|...||+|||+|||+|+.||++|
T Consensus 236 G~amA~raG~A~L~dMEfvQfHPT~l~~~g~LisEa~RGeGg~L~n~~GeRFm~~y~P~~~ELa~RDvVsrai~~ei~~G 315 (657)
T PRK08626 236 GAALALETGVAKLGNMEAVQFHPTAIVPSGILTTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVSRRMTEHIRKG 315 (657)
T ss_pred HHHHHHHHCCCEECCCHHHEEECCEECCCCCCCHHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999980743104843542422224587742205323577667888756011213776444441015668899999836
Q ss_pred CCCCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 888888-8746886111798999998537999997643678654406752033100123421577158537788853322
Q gi|254781043|r 312 RGVGKS-KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFA 390 (611)
Q Consensus 312 ~g~~~~-~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i 390 (611)
+|+... +.+||||++|++++.++++||.+.+.|..|.|+||.+++|||.|++||+||||+||.++++ |+|
T Consensus 316 ~G~~~~~g~~v~LDi~~l~~~~i~~~l~~i~e~~~~f~GiDp~~~~ipV~P~aHYtMGGI~vd~~g~t---------~~I 386 (657)
T PRK08626 316 KGVKSPYGPHLWLDITILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGES---------PGL 386 (657)
T ss_pred CCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEECCCEEECCCCCC---------CCC
T ss_conf 88667777525743765056776420488999999972979655705742134722668307888862---------673
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 760340212203356643047643222222321567755665420265667--640023578886310103788713689
Q gi|254781043|r 391 PGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPS--LDISSCDRIMDRFDRLRHADGHVPTAA 468 (611)
Q Consensus 391 ~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~ 468 (611)
|||||||||+|+|+|||||||||||++|+|||++||++||+|++....... ...+..+...+++..+.+.++..+|.+
T Consensus 387 ~GLyAaGE~a~~GvHGANRLGgNSLlE~vVfGr~AG~~aA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 466 (657)
T PRK08626 387 KGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIIGKYVADFCEGNDLEIDTALVEKFVKKVQDYIDSLIEGDGKENVFE 466 (657)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 40124035342566654444430489999999999999999986266677823367888989999987742789989999
Q ss_pred HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99878876650972687589999999999999999841515787754588999999888899999999999962625504
Q gi|254781043|r 469 LREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG 548 (611)
Q Consensus 469 i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG 548 (611)
++++||++||+|+||+|++++|++|+.+|+.|++++.++.+.++...+|++|++++|+.||+.+|+++++|||+|+||||
T Consensus 467 i~~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~N~el~~alEl~nml~~A~~i~~aAL~R~ESRG 546 (657)
T PRK08626 467 IKNEMQRIMMDYVGIFRNGPELEKAVKELQELLERSKNIGLKCKKRHANPELEEALRVPRMLKLALCVACGALARTESRG 546 (657)
T ss_pred HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999970889688899999999999999999972771577543588999999999999999999999861643542
Q ss_pred CEECCCCCCCCCCCCCCHHHCEEEEEEEE-CCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 62353377887666880321356999984-6898059999447444256755000027721679
Q gi|254781043|r 549 SHAREDFKDGEFGGRDDVNWRKHSLCWVD-WNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 549 ~H~R~DyPe~~~~~rDD~nwl~h~~~~~~-~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
+|||+|||+ |||+||||||+++|. +++..|++.|+|+. +....+||..|.|
T Consensus 547 aH~R~DyPe-----rDD~~wLkht~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 598 (657)
T PRK08626 547 AHAREDYPK-----RNDRDWLNRTLASWPEGEALEPTLEYEPLD-------VMKMELPPGFRGY 598 (657)
T ss_pred CCCCCCCCC-----CCCCCHHCCCCEECCCCCCCCCEEEEEECC-------EEECCCCCCCCCC
T ss_conf 247678898-----764124231142058877668523102254-------0322468630345
No 8
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1153.12 Aligned_cols=579 Identities=52% Similarity=0.867 Sum_probs=546.1
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
+||||||||||+|||+||++|++.|++|+||+|..+.+|+|.+|||||++++++..+||++.|+.||+++|+++||+++|
T Consensus 6 ~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~~~~s~s~~A~GGi~~a~~~~~~Ds~e~h~~Dtlkag~~l~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 56798999954999999999987499389997889899861666310205037999999999999999963787889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
+.++++++++|+||++|||+|+|+++|.+.+++|+||+..+ .|++.+|+++.+|.||+.|++.|++++.+.+|+++.++
T Consensus 86 ~~l~~~~~~~v~~L~~~Gv~f~r~~~G~~~~r~~gg~s~~~-gg~~~~R~~~~~d~tG~~i~~~L~~~~~~~~i~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNF-GGEQAARTAAAADRTGHALLHTLYQQNLKNKTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999889999999986998614789975001368720002-77633247631576445888768999853598899968
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 56520001344301246898058708995067247415765654334210640144488788751365333322232888
Q gi|254781043|r 176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt 255 (611)
.+++||++++|+|+||+++|.++|+++.|+||+|||||||++++|..+||++.+||||++||+||||.|.||||||||||
T Consensus 165 ~~~~li~~~~G~v~G~~~~~~~~g~~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfiQfhPT 244 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPT 244 (588)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHCEECC
T ss_conf 99999885899699999997789919999827699906986544545558999761999999985997368455202047
Q ss_pred CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCC-CCEEEEEECCCCHHHHH
Q ss_conf 44220143045665578089832686125540765100475201115688998817888888-87468861117989999
Q gi|254781043|r 256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS-KDHIHLYLNHLDPAVLQ 334 (611)
Q Consensus 256 ~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~-~~~v~ld~~~~~~~~l~ 334 (611)
++.++++|++|++||+|++|+|++|||||++|+|..+||+|||+++++|+.||++|+|.... +.+++++++|++++.++
T Consensus 245 ~~~~~~~Li~Ea~rgeG~~l~n~~GeRFm~~~~p~~~eLa~Rd~v~~ai~~ei~~g~g~~~~~~~~~~l~~~~~~~~~~~ 324 (588)
T PRK08958 245 GIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLE 324 (588)
T ss_pred CCCCCCCCCCHHHCCCCCEEECCCCCEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHH
T ss_conf 20677731122103777578757871734222776312343006677779999855786677776379981103878898
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 98537999997643678654406752033100123421577158537788853322760340212203356643047643
Q gi|254781043|r 335 ERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNS 414 (611)
Q Consensus 335 ~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggns 414 (611)
++||.+.+.++.+.++||.++||||.|++||+||||+||.+++|+..+++...|+||||||||||||+|+||||||||||
T Consensus 325 ~~~p~~~~~~~~~~~iD~~~~~ipv~P~~Hy~mGGi~vd~~g~v~~~~~~~~~T~I~GLyAaGEva~~GvHGaNRLggns 404 (588)
T PRK08958 325 SRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNS 404 (588)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEECCEECCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHH
T ss_conf 76147999999856978655863111467765478772566606631677766414754543542325556665430067
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 22222232156775566542026566764002357888631010378871368999878876650972687589999999
Q gi|254781043|r 415 LIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGC 494 (611)
Q Consensus 415 l~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al 494 (611)
|++|+|||++||.+|++++...........+.++...+++..+...+++.+|.+++++||++||+++||+|++++|+++|
T Consensus 405 l~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~i~~~lq~~m~~~~gi~R~~~~L~~al 484 (588)
T PRK08958 405 LLDLVVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKDLQECMQNNFSVFREGDAMAKGL 484 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHH
T ss_conf 89999999999999999876157777877778999999875331267888989999999999984678898689999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEE
Q ss_conf 99999999984151578775458899999988889999999999996262550462353377887666880321356999
Q gi|254781043|r 495 RNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLC 574 (611)
Q Consensus 495 ~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~ 574 (611)
++|+.|++++..+.+.+.+..||++|++++|++||+.+|+++++|||+|+||||+|||.|||+ |||+||+|||+.
T Consensus 485 ~~l~~l~~~~~~~~~~~~~~~~n~~~~~~~El~n~l~~a~~~~~aAL~R~ESRG~H~R~DyP~-----rdD~~wl~ht~~ 559 (588)
T PRK08958 485 EELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFPD-----RDDENWLCHSLY 559 (588)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCHHHCCEEEE
T ss_conf 999999999863756676421240079999999999999999999871523520041768899-----998312715889
Q ss_pred EEECCCCEE---EEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 984689805---9999447444256755000027721679
Q gi|254781043|r 575 WVDWNTGKI---KLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 575 ~~~~~~g~~---~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
+ ++.+.+ ++.|+|| .++.|||++|+|
T Consensus 560 ~--~~~~~~~~~~v~~~~~---------~~~~~~p~~r~y 588 (588)
T PRK08958 560 L--PETESMTRRSVNMEPK---------LREAFPPKIRTY 588 (588)
T ss_pred E--CCCCCCCCCCEECCCC---------CCCCCCCCCCCC
T ss_conf 7--7899756662223560---------104408816889
No 9
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1148.90 Aligned_cols=568 Identities=52% Similarity=0.875 Sum_probs=540.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998898299998689885210411653425137899-9999999998998458877999999999988999999
Q gi|254781043|r 30 LRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYE 108 (611)
Q Consensus 30 l~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~ 108 (611)
|+|||+|++.|++|+||+|.++.+|+|.+||||||+++...+ +|||+.|++||+++|+++||+++|+.+|+++++.|+|
T Consensus 1 L~AAl~~~~~G~~V~vv~K~~~~~sns~~AqGGi~aa~~~~~~~Ds~~~h~~DTl~aG~~l~d~~~V~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 95789999769918999789999878788764678764379999788999999999617756899999999989999999
Q ss_pred HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCC
Q ss_conf 99869981327998551001464114567876564079866654266789999998731230311315652000134430
Q gi|254781043|r 109 LEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC 188 (611)
Q Consensus 109 Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V 188 (611)
|++|||+|+|+++|.+.+|+||||+..+..|++++|+++++|.||+.|+++|++++++.+|+++.++.+++||+++||+|
T Consensus 81 L~~~Gv~F~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~~i~~~~~~~~~~li~~~dg~v 160 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV 160 (570)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEE
T ss_conf 99769988669998771244676004556677502577623559999999999998717988999689876557479829
Q ss_pred EEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 12468980587089950672474157656543342106401444887887513653333222328884422014304566
Q gi|254781043|r 189 VGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGA 268 (611)
Q Consensus 189 ~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~ 268 (611)
+||+++|.++|+++.|+||+|||||||++++|..+|||+++||||++||++|||+|.||||||||||+++++++|++|++
T Consensus 161 ~Gv~~~d~~~g~~~~i~AkaVVLATGG~g~ly~~ttn~~~~tGDG~amA~raGA~l~dmEfiQfhPT~l~~~~~Lisea~ 240 (570)
T PRK05675 161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240 (570)
T ss_pred EEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHEEECCCCCCCCCCCCCCC
T ss_conf 99999975899789998346999169886656765699876749999999879846483171573132257873014012
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 55780898326861255407651004752011156889988178888888746886111798999998537999997643
Q gi|254781043|r 269 RGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFA 348 (611)
Q Consensus 269 rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~ 348 (611)
||+|++|+|++|||||++|+|...||+|||+++++|+.||.+|+|+...+.+||+|++|++++.++++||.+.+.++.+.
T Consensus 241 rgeGa~L~n~~GerFm~~~~p~~~eLa~RDvvsrai~~ei~~g~g~~~~~~~v~ld~~~~~~~~~~~~~p~~~~~~~~~~ 320 (570)
T PRK05675 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFA 320 (570)
T ss_pred CCCCCEEECCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 27866898778718752207620220230576577899998456867888768977123899999752368999999863
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 67865440675203310012342157715853778885332276034021220335664304764322222232156775
Q gi|254781043|r 349 GVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIR 428 (611)
Q Consensus 349 g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~ 428 (611)
++||.++||||.|++||+||||+||.+|+++..+.+.+.|+||||||||||||+|+|||||||||||++|+|||++||.+
T Consensus 321 ~iD~~~~~i~v~P~~Hy~mGGi~id~~g~~i~~d~~~~~t~I~GLyAaGE~a~~GvHGANRLggNsLle~~VfGr~Ag~~ 400 (570)
T PRK05675 321 HVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLH 400 (570)
T ss_pred CCCCCCCCEEEECCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88865575675144383048876367762530366777732153354114234676656664216778889869999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56654202656676400235788863101037887136899987887665097268758999999999999999984151
Q gi|254781043|r 429 ASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLK 508 (611)
Q Consensus 429 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~ 508 (611)
|+++++.............+....++..+....++.++.+++++||++||+++||+|++++|++++++|+.|++++.++.
T Consensus 401 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~ 480 (570)
T PRK05675 401 LEKALREGIEYRDASETDIDAALARLNGLNERTGGEDVAPLRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480 (570)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99876336766788766789999987543216899676999999999999845665279999999999999999998385
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEEEEEC-CCCEEEEEE
Q ss_conf 5787754588999999888899999999999962625504623533778876668803213569999846-898059999
Q gi|254781043|r 509 VHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDW-NTGKIKLDY 587 (611)
Q Consensus 509 ~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~~~~~-~~g~~~~~~ 587 (611)
+.|+...||++|++++|++||+++|+++++|||+|+||||+|||+|||+ |||+||||||+++... ..+++.++|
T Consensus 481 ~~d~~~~~n~~~~~a~El~n~l~~a~~i~~aAl~R~ESRG~H~R~DyPe-----rDD~nwlkHt~~~~~~~~~~~~~~~~ 555 (570)
T PRK05675 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEHRKESRGAHAREDFED-----RDDENWLCHTLYFPGEKRVAKRAVNF 555 (570)
T ss_pred CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 3786400054789999999999999999999971754656467877898-----88867254877816898667671131
Q ss_pred ECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 447444256755000027721679
Q gi|254781043|r 588 RPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 588 ~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
+|| ++++|||+.|+|
T Consensus 556 ~~~---------~i~~~~P~~R~y 570 (570)
T PRK05675 556 APK---------TVPAFEPKVRTY 570 (570)
T ss_pred CCC---------EEEEECCCCCCC
T ss_conf 153---------352128826889
No 10
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1149.21 Aligned_cols=577 Identities=30% Similarity=0.436 Sum_probs=520.9
Q ss_pred CCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHH
Q ss_conf 0053441332310588989968999999999988982999986-8988521041165342513789-9999999999899
Q gi|254781043|r 6 NLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK-VFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTI 83 (611)
Q Consensus 6 ~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK-~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~ 83 (611)
.+|.++|-..++|||||||||+|||+|||+|++.|++|+|++| ..+.+|||.+|||||||+++.. ++|||+.|++||+
T Consensus 22 ~~~~~~~~~~~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~~~~~~snS~~AqGGInAa~~~~~~~DS~e~H~~DTl 101 (638)
T PRK07573 22 HLKLVNPANKRKFDIIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTV 101 (638)
T ss_pred CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 48556866466488899996699999999999749956999922899962088875556740468999989899999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHH----H
Q ss_conf 845887799999999998899999999869981327998551001464114567876564079866654266789----9
Q gi|254781043|r 84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILH----T 159 (611)
Q Consensus 84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~----~ 159 (611)
++|+|+||+++|+.+|+++|+.|+||++|||+|+|+++|.+.++.||||+ .+|++|++|.||++|+. .
T Consensus 102 kaG~gl~d~~~V~~l~~~ap~~I~~L~~~Gv~Fdr~~~g~l~~~~~GGhS--------~~Ri~ha~d~TG~~i~~~l~~~ 173 (638)
T PRK07573 102 KGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQ--------VSRTFYARGQTGQQLLLGAYSA 173 (638)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCEEEECCCCCHHHHHHHHHHH
T ss_conf 86278774999999999889999999975998756899866044566766--------5247732896168999999999
Q ss_pred HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf 99998731230311315652000134430124689805870899506724741576565433421064014448878875
Q gi|254781043|r 160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVAR 239 (611)
Q Consensus 160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~ 239 (611)
|.+++.+.+|+++.++.+++||++ ||+|.||+++|..+|++..|.||+|||||||++++|+.||||.++||||++||+|
T Consensus 174 L~~~~~~~~I~~~~~~~~~dLi~~-dg~~~Gv~~~d~~~G~~~~~~AkaVILATGG~g~ly~~TTN~~~atGDG~a~A~r 252 (638)
T PRK07573 174 LSRQIAAGTVELFTRTEMLDLVVV-DGRARGIVARNLVTGEIERHAADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHK 252 (638)
T ss_pred HHHHHHCCCCEEEECEEEEEEEEE-CCEEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999873389889935799998998-9999999999658994899971679985785751212525899884799999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCE------EECCCCCCCCCEEEEECCC--------------CCCCCCCCCCCCCCCCCCE
Q ss_conf 1365333322232888442201------4304566557808983268--------------6125540765100475201
Q gi|254781043|r 240 AGLPLQDMEFVQFHPTGIYGAG------CLITEGARGEGGYLVNSKG--------------ERFMERYAPSAKDLASRDV 299 (611)
Q Consensus 240 aGa~l~~mEf~qfhPt~~~~~~------~l~~~~~rg~G~~l~n~~G--------------erf~~~y~~~~~el~~rd~ 299 (611)
+||.|.||||||||||+++.++ +|+||++||+|++|+|.++ ++||++|+|..+||+||||
T Consensus 253 aGA~l~dmEfvQfHPT~l~~~~~~~~~~~LisEavRGeGailv~~~~~d~~~~~~i~~~er~~fmer~yp~~geLapRDv 332 (638)
T PRK07573 253 KGAYFANPCFTQIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDARKPNDIPEEERDYYLERRYPAFGNLVPRDV 332 (638)
T ss_pred CCCCCCCCHHEEEECCCCCCCCCCCCCCEEEEHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 69973584241674310057875455533654234145643125443332341114416777888762543355325389
Q ss_pred EHHHHHHHHHHCCCCCCCCCEEEEEEC----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 115688998817888888874688611----1798999998537999997643678654406752033100123421577
Q gi|254781043|r 300 VSRCMMMEIREGRGVGKSKDHIHLYLN----HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYW 375 (611)
Q Consensus 300 ~s~ai~~ei~~g~g~~~~~~~v~ld~~----~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~ 375 (611)
|||+|+.||++|+|+..++.+||||++ |++++.++++||.+.+.+.++.|+||.++||||.|++||+||||+||.+
T Consensus 333 Vsrai~~ei~~Grg~~~~~~~V~LD~~~~i~~~~~~~i~~r~p~~~~~~~~~~g~D~~~~pIpV~PaaHy~MGGI~vD~~ 412 (638)
T PRK07573 333 ASRAAKERCDAGRGVGPGGLAVYLDFADAIKRLGEDVIRERYGNLFEMYERITGEDPYKTPMRIYPAVHYTMGGLWVDYN 412 (638)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 99999999986268689986443135777653288999998756999999983999545861252355600379668877
Q ss_pred CEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCC--C----CHHHH
Q ss_conf 15853778885332276034021220335664304764322222232156-77556654202656676--4----00235
Q gi|254781043|r 376 GEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA-VIRASEMIDKSSPIPSL--D----ISSCD 448 (611)
Q Consensus 376 g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~A-g~~aa~~~~~~~~~~~~--~----~~~~~ 448 (611)
++ |+||||||||||+| |+|||||||||||+||+|||+++ +..++.+.......... + .+..+
T Consensus 413 ~~----------T~I~GLyAaGE~a~-gvHGANRLgsNSLlE~lVfG~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 481 (638)
T PRK07573 413 LM----------STIPGLFVIGEANF-SDHGANRLGASALMQGLADGYFVLPYTIGNYLAGTIGTPKVSTDHPEFKEAEA 481 (638)
T ss_pred CC----------CCCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 65----------52587188543475-76542120456699998726000024677887640245677767656788999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 78886310103788713689998788766509726875899999999999999998-41515787754588999999888
Q gi|254781043|r 449 RIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEM-ADLKVHDRSLIWNSDLVETLELQ 527 (611)
Q Consensus 449 ~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~-~~i~~~d~~~~~n~el~~~~el~ 527 (611)
...+++.++.+.++..+|.+++++||++||++|||+|++++|++|+.+|++|++++ +++.+++++..||++|.+++|+.
T Consensus 482 ~~~~~~~~l~~~~g~~~~~~ir~~L~~~M~~~vGI~R~~~~L~~al~~l~~l~~~~~~~~~v~~~~~~~N~~l~~alel~ 561 (638)
T PRK07573 482 EVQDRIDRLLNINGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIPALREEFWKNVRVPGSGDELNQELEKAGRVA 561 (638)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999998761589989899999999999852586777999999999999999999717714788521068999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC-CCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCC
Q ss_conf 89999999999996262550462353377887-66688032135699998468980599994474442567550000277
Q gi|254781043|r 528 NLMINAIATVYSAEARKESRGSHAREDFKDGE-FGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAP 606 (611)
Q Consensus 528 ~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~-~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p 606 (611)
|||++|+++++|||+|+||||+|||+|||++| .-.|||+||++|++++++++..++.+.|+|| ++++|+|
T Consensus 562 nml~vA~~i~~sAL~RkESRGaH~R~DyP~~D~~~~RdD~~~~~~~~~~~~~~~~~~~~~~~pv---------~~~~~~p 632 (638)
T PRK07573 562 DFLELGELMCRDALHREESCGGHFREEHQTEDGEALRDDENFAYVAAWEYKGEGKEPVLHKEPL---------EFENVHL 632 (638)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCEEEECCC---------EEEEECC
T ss_conf 8999999999999846656564577456898887666616555333555548888731531571---------4666787
Q ss_pred CCCCC
Q ss_conf 21679
Q gi|254781043|r 607 KARVY 611 (611)
Q Consensus 607 ~~R~Y 611 (611)
++|+|
T Consensus 633 ~~R~Y 637 (638)
T PRK07573 633 AQRSY 637 (638)
T ss_pred CCCCC
T ss_conf 35778
No 11
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=0 Score=1124.41 Aligned_cols=560 Identities=42% Similarity=0.689 Sum_probs=524.2
Q ss_pred EEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 310588989968999999999988--982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
.+|||||||||+|||+||++|++. |++|+|++|..+.+|+|.+|+||++++.. .+||++.|++||+++|+|+|||+
T Consensus 3 ~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~~~s~s~~a~GG~~a~~~--~~Ds~e~~~~Dt~~~G~~l~d~~ 80 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ--DHDSFDYHFHDTVAGGDWLCEQD 80 (582)
T ss_pred EECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHEEECC--CCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 3556899996699999999999868998599997899899861877612504479--99999999999999706788899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf 9999999889999999986998132799855100146411456787656407986665426678999999873-123031
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFF 172 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~ 172 (611)
+|+.|+++++++|+||++|||||+|+++|.+.+++||||+ .+|+++++|.||..|++.|.+++++ .+|+++
T Consensus 81 lv~~l~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~~~gGhs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~~i~~~ 152 (582)
T PRK09231 81 VVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMK--------IERTWFAADKTGFHMLHTLFQTSLQYPQIQRF 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCC--------CCEEEECCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999999999984998215799877543048710--------46123358986699999999999856997899
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r 173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 (611)
Q Consensus 173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf 252 (611)
+++++++||++ ||+|+||+++|..+|+++.|+||+|||||||++++|.++||++.+||||++||+++||.|.||||+||
T Consensus 153 ~~~~~~~Ll~~-dg~v~Ga~~~d~~~G~~~~i~AkaVILATGG~g~l~~~~tn~~~~TGdG~amA~raGA~l~dmEfiQ~ 231 (582)
T PRK09231 153 DEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMAMAYRHGVPLRDMEFVQY 231 (582)
T ss_pred EEEEEEEEEEC-CCEEEEEEEEECCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
T ss_conf 75999888963-98089999998899968999737699867887655357788887467999999985998378268734
Q ss_pred CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC-----------CCCCCCCCCCEEHHHHHHHHHHCCCCCC-CCCE
Q ss_conf 888442201430456655780898326861255407-----------6510047520111568899881788888-8874
Q gi|254781043|r 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYA-----------PSAKDLASRDVVSRCMMMEIREGRGVGK-SKDH 320 (611)
Q Consensus 253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~-----------~~~~el~~rd~~s~ai~~ei~~g~g~~~-~~~~ 320 (611)
|||+++.+++|++|++||+||+|+|++|+|||++|. ....||+|||+++++|+.|+++|+++.. .+..
T Consensus 232 hPt~~~~~~~l~~e~~rg~Ggilvn~~G~rF~~~~~~~~~~~~~~~~~~~~el~~rd~v~~ai~~e~~~g~~~~~~~g~~ 311 (582)
T PRK09231 232 HPTGLPGSGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDV 311 (582)
T ss_pred CCCCCCCCCCEEEEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 68745777624312014686089898876836640656556443420332201732788999999997178644678865
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf 68861117989999985379999976436786544067520331001234215771585377888533227603402122
Q gi|254781043|r 321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG 400 (611)
Q Consensus 321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a 400 (611)
||+|++|++++.+.+++|.+.+.++.+.|+||.++||||.|++||+||||+||.+++ |+||||||||||+
T Consensus 312 v~lDl~~l~~~~~~~~~p~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~vD~~~~----------t~I~GLyAaGEva 381 (582)
T PRK09231 312 VYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTVHYTMGGIETDQNCE----------TRIKGLFAVGECS 381 (582)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCEEECCCCC----------CCCCCEEEEECCC
T ss_conf 772013258999986538999999997198955675154530038778933788987----------6468738811444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0335664304764322222232156775566542026566764-002357888631010378871368999878876650
Q gi|254781043|r 401 CASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLD-ISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQL 479 (611)
Q Consensus 401 ~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~ 479 (611)
|+|+|||||||||||++|+|||++||++|+++++.....+... ........+++..+.+.++..++.+++++||++||+
T Consensus 382 ~~GvHGANRLggnsl~e~~VfG~~Ag~~Aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~m~~ 461 (582)
T PRK09231 382 SVGLHGANRLGSNSLAELVVFGRLAGEQAAERAATAGPGNEAAIDAQAADVEARLKALVNQEGGENWAKIRDEMGLSMEE 461 (582)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 16677765322346899999999999999998863688885234556778887888764257898999999999999973
Q ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC--CCC
Q ss_conf 972687589999999999999999841515787754588999999888899999999999962625504623533--778
Q gi|254781043|r 480 DAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARED--FKD 557 (611)
Q Consensus 480 ~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~D--yPe 557 (611)
|+||+|++++|++++++|++|+++++++.+.+.+..||++|++++|++|||.+|+++++|||+|+||||+|||+| ||+
T Consensus 462 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~el~~~~E~~n~l~~a~~~~~aAl~R~ESRG~H~R~D~~~P~ 541 (582)
T PRK09231 462 GCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAEAMAHSALARKESRGAHQRLDEGCTE 541 (582)
T ss_pred CCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCC
T ss_conf 26878878999999999999999997285067765557789999999999999999999986053244221477889998
Q ss_pred CCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 876668803213569999846898059999447444256755000027721679
Q gi|254781043|r 558 GEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 558 ~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
|||+||+|||+++++ .+|+++++|+|| ++++|+|++|+|
T Consensus 542 -----rdD~nwl~ht~~~~~-~~g~~~~~~~~v---------~~~~~~p~~r~y 580 (582)
T PRK09231 542 -----RDDVNFLKHTLAFYD-ADGTPRIEYSDV---------KITKSPPAKRVY 580 (582)
T ss_pred -----CCCCCCCEEEEEEEC-CCCCEEEEEECC---------EEEEECCCCCCC
T ss_conf -----776040106899998-999867876343---------120008826788
No 12
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1124.34 Aligned_cols=565 Identities=44% Similarity=0.751 Sum_probs=529.8
Q ss_pred EECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 105889899689999999999889--829999868988521041165342513789-99999999998998458877999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
+|||||||||+|||+||++|++.| ++|+|++|..+.+|+|.+|+|||++++.+. +.||++.|++||+++|++++||+
T Consensus 3 e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 08989999659999999999987899829999788999972688878899884379999899999999998646888899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
+|+.++++++++|+||++||++|+|+++|++.+++|+||+ ++|++++++.||..|++.|.+++++.||++++
T Consensus 83 lv~~l~~~~~~~v~~Le~~Gv~f~r~~dG~~~~~~~gGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~ 154 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHS--------HNRTCYAADKTGHAILHELVNNLRRYGVTIYD 154 (575)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999999999986997760889888011036710--------25554568883999999999998546978994
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31565200013443012468980587089950672474157656543342106401444887887513653333222328
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfh 253 (611)
++.+++||++ ||+|+||++++..+|+++.|+||+|||||||++++|..+||+.++||||++||+++||+|+||||+|||
T Consensus 155 ~~~v~~Ll~~-dg~v~Ga~~~~~~~G~~~~i~AkaVVlATGG~~~~~~~ttn~~~~TGdG~~ma~raGA~l~dmEfiQfh 233 (575)
T PRK05945 155 EWYVMRLILE-ENEAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFH 233 (575)
T ss_pred EEEEEEEEEE-CCEEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf 1788889870-997899999971688389998998998999987788888899877359999999859871683687417
Q ss_pred CCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCC----CCCEEEEEECCCC
Q ss_conf 884422014304566557808983268612554076510047520111568899881788888----8874688611179
Q gi|254781043|r 254 PTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGK----SKDHIHLYLNHLD 329 (611)
Q Consensus 254 Pt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~----~~~~v~ld~~~~~ 329 (611)
||+++++++|+++++||+|++|+|++|+|||++|+|..+||+|||+++++|+.|+++|||+.. ++.++|+|++|++
T Consensus 234 Pt~~~~~g~l~~e~~rg~Ga~l~n~~GerF~~~y~p~~~ela~rdv~~~ai~~ei~~grg~~~~~~~g~~~v~ld~~~~~ 313 (575)
T PRK05945 234 PTGLYPVGVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINLDGSAGGPFVYLDLRHMG 313 (575)
T ss_pred CCCCCCCCCEECHHHCCCCEEEECCCCCCHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 64215766430053236862896379953255406200002651255799999998578767676668855897564358
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 89999985379999976436786544067520331001234215771585377888533227603402122033566430
Q gi|254781043|r 330 PAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR 409 (611)
Q Consensus 330 ~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanr 409 (611)
++.+.+++|..++.+.++.|+|+.++||||.|++||+||||+||.+++|++.. .|+||||||||||+|+|+|||||
T Consensus 314 ~e~~~~~~~~~~~~~~~~~GiD~~~~~i~v~P~~Hy~mGGi~id~~~~v~~~~----~t~I~GLyAaGE~ag~g~HGanR 389 (575)
T PRK05945 314 KEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSA----DTLVEGFFAAGECACVSVHGANR 389 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCEEECCCCEEECCC----CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89998762899999999728986556357642443763675777787682478----86556650136677567766654
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 4764322222232156775566542026566764002-357888631010378871368999878876650972687589
Q gi|254781043|r 410 LGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISS-CDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQD 488 (611)
Q Consensus 410 lggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~ 488 (611)
||||||++|+|||++||++|++|++.. ..+..+.+. .....+++..+...++..+|.+++++||++||+|+||+|+++
T Consensus 390 Lggnsl~e~~VfG~~Ag~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~ 468 (575)
T PRK05945 390 LGSNSLLECVVYGRRTGAAIAEYVQGR-KLPEVDEQRYLKEAQQRIQALLEQSGTIRINQLRQQFQDCMTDHCGVFRTEA 468 (575)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEECHH
T ss_conf 322028999999999999999987428-9999986788899999998875378998999999999999985068432689
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHH
Q ss_conf 99999999999999984151578775458899999988889999999999996262550462353377887666880321
Q gi|254781043|r 489 SLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNW 568 (611)
Q Consensus 489 ~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nw 568 (611)
+|++++++|++|++++.++.+.+.+..||++|++++|++||+.+|+++++|||+|+||||+|||.|||| |||+||
T Consensus 469 ~L~~al~~l~~l~~~~~~~~~~~~~~~~n~el~~~~E~~n~l~~a~~~~~aal~R~ESRG~H~R~DyPe-----~DD~~w 543 (575)
T PRK05945 469 IMQEGLEKIQELKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGELILTSALNRQESRGAHSREDYPQ-----RDDQNF 543 (575)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCC
T ss_conf 999999999999999984684777631017899999999999999999999871512454004867787-----757203
Q ss_pred CEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 3569999846898059999447444256755000027721679
Q gi|254781043|r 569 RKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 569 l~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
+|||+++++ .+++++.|+|| .++.+||++|+|
T Consensus 544 lkht~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y 575 (575)
T PRK05945 544 LQHTLAYYS--PAGIDIQYMPV---------VITMFEPQERKY 575 (575)
T ss_pred CCEEEEEEE--CCCCEEEEECC---------EEEEECCCCCCC
T ss_conf 145789993--89556987503---------565418806889
No 13
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1116.06 Aligned_cols=561 Identities=44% Similarity=0.700 Sum_probs=524.8
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC--CCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 2310588989968999999999988982999986898852104116534251378--99999999999899845887799
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN--MTPDSWQWHLYDTIKGSDWLGDV 92 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~--~~~Ds~~~~~~Dt~~~g~~l~d~ 92 (611)
..+|||||||||+|||+||++|++.|++|+||+|..+.+|+|.+|+|||++++.. .+.||++.|++||+++|+++||+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l~d~ 82 (566)
T PRK06452 3 KLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYLVDQ 82 (566)
T ss_pred EEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 68707899997499999999998779978999788999975368668206863579999989999999999854688899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999999889999999986998132799855100146411456787656407986665426678999999873123031
Q gi|254781043|r 93 DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF 172 (611)
Q Consensus 93 ~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~ 172 (611)
++++.++++++++|+||++||+||+|+++|++.++.||||+ ++|+++++|.||..|+++|.+++.+.+|+++
T Consensus 83 ~~v~~l~~~~~~~i~~L~~~Gv~f~r~~dG~~~~~~~gghs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~i~~~ 154 (566)
T PRK06452 83 DAAELLSYKSGEIVELLERWGALFNRQPDGRVALRYFGGQT--------YPRTRFVGDKTGMALLHTLYERTSGLNVDFY 154 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC--------CCEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999899999999983998652899988443347755--------1335742887668999999999862997899
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r 173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 (611)
Q Consensus 173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf 252 (611)
.++.+++||++ +|+|+||+++|.++|+++.|+||+|||||||++++|..+||++.+||||++||++|||.|+||||+||
T Consensus 155 ~~~~~~~Ll~~-~~~v~Gav~~d~~~~~~~~~~AkaVVLATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfvQf 233 (566)
T PRK06452 155 NEWFAWDLVRD-EKRVAGVVAMDMRSMEPFFFKAKAVVIASGGMGMLYRHTTNSYINTGDGYGMALRAGVALKDPEFVQF 233 (566)
T ss_pred EEEEEEEEEEC-CCEEEEEEEEECCCCEEEEEECCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
T ss_conf 87899998853-98688999997689959999818899917851344325679987606999999983998579578604
Q ss_pred CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 88844220143045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV 332 (611)
Q Consensus 253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~ 332 (611)
|||+++++++|++|++||+|++|+|.+|+|||++|+|...|++|||+++++|+.|+++|+|++. ..||+|++|++++.
T Consensus 234 hPt~~~~~~~l~~e~~rg~G~~l~n~~Gerf~~~y~p~~~elaprdvv~rai~~e~~~g~g~~~--~~v~ld~~~~~~~~ 311 (566)
T PRK06452 234 HPTALYPSDILISEAARGEGAILKNNKGERFMTRYAPKKLDLAPRDIVSRAITTEIKEGRGFPG--GYVGLDLTHLGEDY 311 (566)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CEEEEEHHHCCHHH
T ss_conf 6653157883222021367507756798682021076646556187988999999986479988--63341442079999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r 333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS 412 (611)
Q Consensus 333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg 412 (611)
++++|+.+.+.++.+.|+|+.++||||.|++||+||||+||.+++ .|+||||||||||+|+|+||||||||
T Consensus 312 ~~~~~~~~~~~~~~~~giD~~~~~ipv~P~~Hy~mGGi~id~~~~---------~t~I~GLyAaGE~ag~g~HGanRLgg 382 (566)
T PRK06452 312 IKERLALAYEAAKSFAGVDATKEMIPVRPAQHYYMGGIDVDITGR---------NPDLIGLFAAGEAACVSVHGANRLGS 382 (566)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEECCCCC---------CCCCCCCEECCCCCCCCCCCCCCCHH
T ss_conf 987636899999985399865673355366662368824676888---------67776324336755146788886414
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 432222223215677556654202656676400-2357888631010378871368999878876650972687589999
Q gi|254781043|r 413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS 491 (611)
Q Consensus 413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~ 491 (611)
|||++|+|||++||++|++|++.....+..+.+ ..++.......+...+++.+|.+++++||++||+|+||+|++++|+
T Consensus 383 nsl~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lq~~m~~~~gi~R~~~~L~ 462 (566)
T PRK06452 383 NSLLETLVFGRETGRAVVEFLKSETEIPSSDIDKEAEKSLDDAYKYVKSESGVHFGEILEKLRDTMWDYVGIFRDENGLK 462 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHH
T ss_conf 55899999999999999999861688897623465899887788775166888889999999999987469786589999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEE
Q ss_conf 99999999999984151578775458899999988889999999999996262550462353377887666880321356
Q gi|254781043|r 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKH 571 (611)
Q Consensus 492 ~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h 571 (611)
+++++|+.|+++++++.+.|....+|++|++++|++||+.+|+++++|||+|+||||+|||+|||+ |||+||+||
T Consensus 463 ~al~~l~~l~e~~~~~~~~d~~~~~n~el~~~~E~~n~l~~a~~~~~aal~R~ESRG~H~R~DyPe-----~DD~nwlk~ 537 (566)
T PRK06452 463 NAVSEIKKLREQMKSMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALNRKESRGAHYRTDYPD-----RDDQNWLKH 537 (566)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCHHHCCE
T ss_conf 999999999999973734786643247899999999999999999999973410454026767799-----867403646
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 9999846898059999447444256755000027721679
Q gi|254781043|r 572 SLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 572 ~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
++++++ .+++++.|+|| ++++|+|++|+|
T Consensus 538 ~~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y 566 (566)
T PRK06452 538 TIAYLS--GNTVEITYKPV---------KMTRWKPEARVY 566 (566)
T ss_pred EEEEEE--CCCCEEEEEEE---------EEEEECCCCCCC
T ss_conf 889981--99006998840---------344408967879
No 14
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1106.42 Aligned_cols=567 Identities=45% Similarity=0.718 Sum_probs=524.1
Q ss_pred EEECEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHCCCCEEEECCC-CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 310588989968999999999988---982999986898852104116534251378-9999999999989984588779
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEK---GFKTACITKVFPTRSHTVAAQGGIAASLAN-MTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~---G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
.+|||||||||+|||+||++|++. |++|+|++|.+..+|+|.+|+|||++++.. ...||++.|++||+++|+++||
T Consensus 4 ~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~l~d 83 (582)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDFLAD 83 (582)
T ss_pred EECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 87068999973999999999998538998699997989999708999877998717888999989999999985368888
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCE
Q ss_conf 999999999889999999986998132799855100146411456787656407986665426678999999873-1230
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAE 170 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~ 170 (611)
+++++.++++++++|+||++|||+|.|+++|++.+++||||+ ++|+++++|.||..|+..|.+++++ .+|+
T Consensus 84 ~~lv~~l~~~a~~~v~~le~~Gv~f~r~~~G~~~~~~~gGhs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~gv~ 155 (582)
T PRK06069 84 QDAVEVLVREAPEEIRFLDHWGVPWSRDPDGRISQRPFGGMS--------FPRTTFAADKTGFYIMSTLYSRALRFDNIH 155 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCC--------CCEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 999999999899999999976997106899988752158703--------450003678753999999999998469948
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 31131565200013443012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
++.++++++||++ +|+|+||+++|.++|+++.|+||+|||||||++++|..+||++++||||++||+++||.|+||||+
T Consensus 156 ~~~~~~vt~Ll~~-~g~v~Ga~~~d~~~G~~~~i~AkaVVlATGG~g~l~~~~t~~~~~TGdg~~~a~~aGA~l~~mEfv 234 (582)
T PRK06069 156 FYHEHFVTSLIVE-NGVFKGVTAIDLRRGEFKVFQAKAGIIATGGAGRLYRFTTYAHSVTGDGLGYALRAGIPLKDMEFV 234 (582)
T ss_pred EEEEEEEEEEEEC-CCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHH
T ss_conf 9977898888743-998999999976898299998255998988675467877899998868999999769971484267
Q ss_pred CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCC--CEEEEEECCC
Q ss_conf 32888442201430456655780898326861255407651004752011156889988178888888--7468861117
Q gi|254781043|r 251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSK--DHIHLYLNHL 328 (611)
Q Consensus 251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~--~~v~ld~~~~ 328 (611)
|||||++.++++|+++++|++|++|+|.+|+|||++|+|...|++|||+++++|+.|+.+|||..... ..+|+|++|+
T Consensus 235 Q~hPt~~~p~g~l~~e~~rg~G~~l~n~~GerF~~~y~~~~~elaprdvv~~ai~~e~~~grg~~~~~g~~~v~ld~~~~ 314 (582)
T PRK06069 235 QFHPTALVPSGILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTECMEGRGFDHESGLCYVGLDLRHL 314 (582)
T ss_pred HHCCCCCCCCCCEEHHHCCCCCCEEECCCCCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 51766315776152032016775897469978023208652333636666377899999657967788850689866558
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 98999998537999997643678654406752033100123421577158537788853322760340212203356643
Q gi|254781043|r 329 DPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGAN 408 (611)
Q Consensus 329 ~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGan 408 (611)
+++.+++++|.+.+.+..+.|+||.++||||.|++||+||||+||.+++|++.. .|+||||||||||+|+|+||||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~id~~~~v~~~~----~t~I~GLyAaGE~a~~G~HGan 390 (582)
T PRK06069 315 GEEKINERLPLIRELAKKYAGIDPVTEPIPVRPAVHYTMGGIHTDVRGRVLTAD----GTWVRGLWAAGEAAAVSVHGAN 390 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEECCCEEECCCCEEECCC----CCCCCCCEECCCCCCCCCCCCC
T ss_conf 989997551489999998528886667436650354643780778784772578----8623772114654446556787
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 04764322222232156775566542026566764002---35788863101--03788713689998788766509726
Q gi|254781043|r 409 RLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISS---CDRIMDRFDRL--RHADGHVPTAALREKMQRAMQLDAGV 483 (611)
Q Consensus 409 rlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~g~~~~~~i~~~Lq~iM~~~~gi 483 (611)
|||||||++|+|||++||++||+|+......+..+... .+....++... .+..+..+|.+++++||++||+|+|+
T Consensus 391 RLggnsl~e~~VfG~iAG~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~im~~~~gi 470 (582)
T PRK06069 391 RLGSNSLAECLVWGRIAGEQAAKYALERPALGEPDGKLVELVEKEEKRIFDKLLKKEVGGESPYEIRRELRDIMEKNVGI 470 (582)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 65541488999989999999999997388878994456778887887766777521679989899999999999835887
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 87589999999999999999841515787754588999999888899999999999962625504623533778876668
Q gi|254781043|r 484 FRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGR 563 (611)
Q Consensus 484 ~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~r 563 (611)
+|++++|++++.+|++|+++++++.+.|....||++|++++|++||+.+|+++++|||+|+||||+|||.|||+ |
T Consensus 471 ~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~n~el~~~~E~~~~l~~a~~~~~aal~R~ESRG~H~R~DyP~-----~ 545 (582)
T PRK06069 471 FRDESGLAEALKKIKKLRERFKEVRIEDKSRIYNMELKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPK-----R 545 (582)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----C
T ss_conf 88689999999999999999973874776301218999999999999999999999972401555354777798-----8
Q ss_pred CCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 803213569999846898059999447444256755000027721679
Q gi|254781043|r 564 DDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 564 DD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
||+||+||++++++ .++++++|+|| .++.|||+.|+|
T Consensus 546 dd~nwl~~~~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y 582 (582)
T PRK06069 546 DDENWLKHTLAYLT--GGGPKITYTPV---------TITKWKPEERKY 582 (582)
T ss_pred CCCCCCCEEEEEEE--CCCCEEEEEEE---------EEEEECCCCCCC
T ss_conf 77303838999993--89757998853---------266658826879
No 15
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1111.70 Aligned_cols=561 Identities=33% Similarity=0.454 Sum_probs=518.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 105889899689999999999889829999868988521041165342513789-9999999999899845887799999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
++||||||||+|||+|||+|++.|++|+|++|.++.+|+|.+||||||+++... .+|||+.|++||+++|+++||+++|
T Consensus 3 ~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~~~~S~~a~gGi~aa~~~~~~~Ds~~~h~~Dt~~aG~~l~d~~~v 82 (589)
T PRK08641 3 KKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTIYGGDFLANQPPV 82 (589)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 68789989869999999999875997799977788988306778779986047999989899999999955787889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC----CCEE
Q ss_conf 999998899999999869981327998551001464114567876564079866654266789999998731----2303
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN----NAEF 171 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~----gv~i 171 (611)
+.+|+++++.|+||++|||+|+|+++|.+.+++||||+ ++|++|++|.||+.|+++|.+++++. .|++
T Consensus 83 ~~l~~~a~~~i~~Le~~Gv~f~r~~~g~~~~~~~GGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~~ 154 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTL--------HHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK 154 (589)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999899999999983980225799887001257703--------6745357886389999999999983456576599
Q ss_pred ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 11315652000134430124689805870899506724741576565433421064014448878875136533332223
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQ 251 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~q 251 (611)
+.++.+++||++++|+|+||+++|.++|+++.|+||+|||||||++++|..+|||+.+||||++||+++||.|.||||||
T Consensus 155 ~~~~~~~~ll~~~~g~v~Gv~~~d~~~g~~~~i~AkaVILATGG~g~ly~~tTN~~~~TGdG~amA~raGA~l~dmEfiQ 234 (589)
T PRK08641 155 YEGWEFLGAVKDDEGRCRGIVAQNLFTMEIESFGADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQ 234 (589)
T ss_pred EECCEEEEEEECCCCEEEEEEEEECCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEE
T ss_conf 97437889998279969999999888980999951569994688875544667999875199999998498815846145
Q ss_pred CCCCCCCCCE--EECCCCCCCCCEE-EEECCCCC--CCCCCCCCCCCCCCCCEEHHHHHHHHHH-CCCCCCCCCEEEEEE
Q ss_conf 2888442201--4304566557808-98326861--2554076510047520111568899881-788888887468861
Q gi|254781043|r 252 FHPTGIYGAG--CLITEGARGEGGY-LVNSKGER--FMERYAPSAKDLASRDVVSRCMMMEIRE-GRGVGKSKDHIHLYL 325 (611)
Q Consensus 252 fhPt~~~~~~--~l~~~~~rg~G~~-l~n~~Ger--f~~~y~~~~~el~~rd~~s~ai~~ei~~-g~g~~~~~~~v~ld~ 325 (611)
||||++++.. .|++|++||+||+ |+|.+|+| ||++|+|..++|+|||+++|+|+.++.+ +++ ..+..+||||+
T Consensus 235 fhPT~l~~~~~~~Lisea~RGeGg~ll~~~~g~r~~f~~~~~~~~~~la~Rdvvarai~~~~~~~~~~-~~g~~~v~lD~ 313 (589)
T PRK08641 235 IHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLG-INGENMVYLDL 313 (589)
T ss_pred EEEEEECCCCCCEECCHHHCCCCCEEEECCCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEEC
T ss_conf 65205448887423557552789778305899611011102600101264019999999999983578-78877488541
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r 326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH 405 (611)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h 405 (611)
+|++++.+.++||.+.+.+.++.|+||.++||||.|++||+||||+||.+++ |+||||||||||+ +|+|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~D~~~~pi~V~P~~Hy~mGGi~iD~~~~----------T~IpGLyAaGE~a-~g~H 382 (589)
T PRK08641 314 SHKDPKELDIKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQM----------TNIPGLFAAGECD-YSYH 382 (589)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEECCCEEECCCCC----------CCCCCEEECCCCC-CCCC
T ss_conf 1289899998725589999997099964576145434101058767889886----------2368727754445-5667
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-C----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6430476432222223215677556654202656676-4----0023578886310103788713689998788766509
Q gi|254781043|r 406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSL-D----ISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480 (611)
Q Consensus 406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~ 480 (611)
||||||||||++|+|||++||++|++|++........ + .....+..+++..+...++..++.+++++||++||++
T Consensus 383 GaNRLggNSLle~~VfG~~Ag~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~m~~~ 462 (589)
T PRK08641 383 GANRLGANSLLSAIYGGMVAGPNAIRYIKGLGKSADDMPSSIFEQALKQEQEKFDRILSMDGTENAYVLHKELGEWMTDN 462 (589)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 75544310499999989999999999997468875558856777788888988887750578888899999999999862
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf 72687589999999999999999841515787754588999999888899999999999962625504623533778876
Q gi|254781043|r 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEF 560 (611)
Q Consensus 481 ~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~ 560 (611)
+||+|++++|++++++|++|+++++++.+.|....+|++|++++|++||+++|+++++|||+|+||||+|||+|||+
T Consensus 463 ~gi~R~~~~L~~al~~l~~l~e~~~~i~~~d~~~~~n~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~H~R~DyP~--- 539 (589)
T PRK08641 463 VTVVRENKKLLETDEKIKELMERYKRISVNDTSRWSNQGAHFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPE--- 539 (589)
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC---
T ss_conf 63761789999999999999999863887775212126689999999999999999999860622516437667899---
Q ss_pred CCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 668803213569999846898059999447444256755000027721679
Q gi|254781043|r 561 GGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 561 ~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
|||+||||||+++++++.+++++.|+|| +++.|+|++|+|
T Consensus 540 --rdD~~wlkht~~~~~~~~~~~~~~~~pv---------~~~~~~p~~R~Y 579 (589)
T PRK08641 540 --RDDEEWLKTTMAKYQGEGEEPEFTYEDV---------DTSLIPPRKRDY 579 (589)
T ss_pred --CCCHHHHHHEEEEECCCCCCCEEEEECC---------CEEEECCCCCCC
T ss_conf --8635466456357637898642775235---------314678721556
No 16
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=100.00 E-value=0 Score=1092.96 Aligned_cols=559 Identities=43% Similarity=0.703 Sum_probs=527.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 105889899689999999999889--829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
+.|++|||+|.|||+|||+++|.+ ++|.||+|..++||||++|.||-+|+.. ++||.+.|+.||+.+|+|||+||.
T Consensus 3 ~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSKVYPMRSHTVaAEGGsAAV~~--D~DSld~H~~DTV~GGDWLC~QD~ 80 (585)
T TIGR01176 3 QADIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTK--DDDSLDEHFHDTVSGGDWLCEQDV 80 (585)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCCCEEECC--CCCCHHHHCCCCCCCCCCCCCHHH
T ss_conf 323678837844689999998408985378985115776411113553112105--641245414453456643220218
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEEC
Q ss_conf 9999998899999999869981327998551001464114567876564079866654266789999998731-230311
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFI 173 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~ 173 (611)
|++|+.++|..+-.||.||+||+|.+||....|+|||+. ..|++|++|+||.-|+++|.+..++. .|..++
T Consensus 81 Ve~FV~~ap~E~~QlE~WGCPWSRk~dG~V~VR~FGGMK--------~~RTWFAADKTGFH~LHTLFQ~~l~y~~i~R~D 152 (585)
T TIGR01176 81 VEYFVAEAPKELVQLEHWGCPWSRKPDGRVNVRRFGGMK--------VERTWFAADKTGFHLLHTLFQTSLKYPQIKRYD 152 (585)
T ss_pred HHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCC--------CCCEEECCCCCCHHHHHHHHHHHCCCCCCEEHH
T ss_conf 999874133456643127888774789857762268812--------210010112234268899998630563310001
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31565200013443012468980587089950672474157656543342106401444887887513653333222328
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfh 253 (611)
++++++||+| ||+|+|.|++++.+|++..|+|++|||||||+||+|.++||....||||++||+++|+.|+||||||||
T Consensus 153 E~F~~~lLVD-dG~v~GLvAi~~~~G~l~~I~A~aVvlaTGGaGRVy~~~TN~~I~TGDGMa~A~~~G~PL~DMEFVQYH 231 (585)
T TIGR01176 153 EYFVVDLLVD-DGRVRGLVAIELAEGRLVTIKADAVVLATGGAGRVYRFNTNGGIVTGDGMALAFRHGVPLRDMEFVQYH 231 (585)
T ss_pred CEEEEEEEEE-CCEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf 0135555751-773555788863367068887427899308987303310588731261489998478883324301006
Q ss_pred CCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC---------C--CCCCCCCCCEEHHHHHHHHHHCCCCCCC-CCEE
Q ss_conf 88442201430456655780898326861255407---------6--5100475201115688998817888888-8746
Q gi|254781043|r 254 PTGIYGAGCLITEGARGEGGYLVNSKGERFMERYA---------P--SAKDLASRDVVSRCMMMEIREGRGVGKS-KDHI 321 (611)
Q Consensus 254 Pt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~---------~--~~~el~~rd~~s~ai~~ei~~g~g~~~~-~~~v 321 (611)
|||++.+|+||||++|+|||+|+|++|-||+.+|. | ..+||.|||-+|+|.+.|.++|+.+..+ ++-|
T Consensus 232 PTGLP~tGIL~TE~~R~EGG~l~NK~GYRYLQDY~~G~~TP~G~Pk~k~MELGPRDk~SQAF~HE~~KG~Ti~~P~GdVV 311 (585)
T TIGR01176 232 PTGLPGTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEHRKGNTIDTPYGDVV 311 (585)
T ss_pred CCCCCCCCHHCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 88988652100033443776678168741300057778888888753420468865302445746417872258989778
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 88611179899999853799999764367865440675203310012342157715853778885332276034021220
Q gi|254781043|r 322 HLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC 401 (611)
Q Consensus 322 ~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~ 401 (611)
|||||||+++.|+++||.++|+++.|.+|||.+|||||+|++||+||||.+|.+ ++|.||||||+|||||
T Consensus 312 yLDLRHLG~~~l~~~LPFi~ELak~Y~~vDPv~E~iPvRP~vHY~MGGi~Td~~----------c~T~~~GLfA~GE~as 381 (585)
T TIGR01176 312 YLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDIN----------CETRIKGLFAVGECAS 381 (585)
T ss_pred EEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEECCC----------CCCCCCCEEECCCCEE
T ss_conf 850044237887520735789988632668732453688602433065445787----------6411463344022013
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC---CC-CCHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 335664304764322222232156775566542026566---76-40023578886310103788--7136899987887
Q gi|254781043|r 402 ASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIP---SL-DISSCDRIMDRFDRLRHADG--HVPTAALREKMQR 475 (611)
Q Consensus 402 ~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~g--~~~~~~i~~~Lq~ 475 (611)
.|+|||||||||||.|.+|||++||+.|++++....... +. ..++......|+..+.+++| +++++.||.+||.
T Consensus 382 V~l~GANRLGSNSLaEl~VFG~~AG~~A~~~AA~~~~~~rGp~~Ai~AQ~~~~~~Rl~~~~~~~G~GgE~~A~IR~~M~~ 461 (585)
T TIGR01176 382 VGLHGANRLGSNSLAELVVFGRLAGEKAAERAARAKKSNRGPESAIRAQARTVELRLERLLSQEGQGGENWADIRAEMGA 461 (585)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 31135342430036789998776678999999862367778789999999999999999986258886516688899988
Q ss_pred HHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
Q ss_conf 66509726875899999999999999998415157877545889999998888999999999999626255046235337
Q gi|254781043|r 476 AMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF 555 (611)
Q Consensus 476 iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~Dy 555 (611)
.|...|||+|+++-|++++++|..|+|+|+++.+.|++++||++|+..+||..+|++|++|+.|+|.|+||||+|.|.|+
T Consensus 462 t~E~~~GIYR~~~~~~~~i~~l~~L~ERf~~~~I~D~s~~FNT~L~~~~El~~~LdVA~a~v~Sa~~R~ESRGAHQR~D~ 541 (585)
T TIGR01176 462 TLESGCGIYRDEELLQKTIDKLAELQERFKRVGIDDKSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDE 541 (585)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 89850774468267999999999865422266562055210178998987403047999998631033124651013568
Q ss_pred --CCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf --78876668803213569999846898059999447444256755000027721679
Q gi|254781043|r 556 --KDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 556 --Pe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
|| |||++||+||++.++ +++.+++.|-|| +++++||..|.|
T Consensus 542 GC~~-----RDD~~FL~HtL~f~~-~d~T~r~~Y~pV---------~IT~~~P~~RvY 584 (585)
T TIGR01176 542 GCTE-----RDDVHFLKHTLAFRE-SDGTLRVEYSPV---------KITRLPPKERVY 584 (585)
T ss_pred CCCC-----CCHHHHHHHHHHEEC-CCCEEEEEECCE---------EEECCCCCCCCC
T ss_conf 8887-----335788665331021-788124110120---------674258644578
No 17
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1067.44 Aligned_cols=552 Identities=37% Similarity=0.595 Sum_probs=503.3
Q ss_pred CEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCC
Q ss_conf 13323105889899689999999999889829999868988521041165342513789-99999999998998458877
Q gi|254781043|r 12 TYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLG 90 (611)
Q Consensus 12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~ 90 (611)
++-.++|||||||||+|||+||++|+++|++|+||+|..+.+|+|.+|+|||++++++. +.|||+.|++||+++|+++|
T Consensus 3 ~~~~~e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~~~~s~~A~GGi~a~~~~~~~~Ds~e~h~~Dtl~~G~~l~ 82 (631)
T PRK07803 3 EVERHEYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFGDTMRGGKFLN 82 (631)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 65531059899996499999999998769987999789999865367657676440689999899999999998627888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH----
Q ss_conf 9999999999889999999986998132799855100146411456787656407986665426678999999873----
Q gi|254781043|r 91 DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK---- 166 (611)
Q Consensus 91 d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~---- 166 (611)
|+++|+.+++++++.|+||++||++|+|+++|.+.++.||||+ ++|++|++|+||..|+++|.+++..
T Consensus 83 d~~~v~~l~~~a~~~v~~Le~~Gv~f~r~~dG~~~~~~~GGhs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~~ 154 (631)
T PRK07803 83 NWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHT--------YPRLAHVGDRTGLELIRTLQQKIVSLQQE 154 (631)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999985997544899877210168865--------65001127875699999999999973013
Q ss_pred ---------CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHH
Q ss_conf ---------12303113156520001344301246898058708995067247415765654334210640144488788
Q gi|254781043|r 167 ---------NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMV 237 (611)
Q Consensus 167 ---------~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA 237 (611)
.+|+++.++.+++|++| +|+|+||++++.++|+++.|+||+|||||||++++|..+||++.+||||++||
T Consensus 155 ~~~~~~~~~~~i~v~~~~~v~~Ll~d-~g~v~Ga~~~~~~~g~~~~~~AkaVVLATGG~g~~f~~ttn~~~~TGDG~amA 233 (631)
T PRK07803 155 DKAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALA 233 (631)
T ss_pred HHHHHHCCCCCEEEEECCEEEEEEEE-CCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 44443203467389933288999986-99999999998789829999625699867767635645689998775999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC----CEEECCCCCCCCCEEEEECCCCCCCCCCCCC-----------------------
Q ss_conf 7513653333222328884422----0143045665578089832686125540765-----------------------
Q gi|254781043|r 238 ARAGLPLQDMEFVQFHPTGIYG----AGCLITEGARGEGGYLVNSKGERFMERYAPS----------------------- 290 (611)
Q Consensus 238 ~~aGa~l~~mEf~qfhPt~~~~----~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~----------------------- 290 (611)
+++||.|.||||||||||++.. .++|++|++||+|++|+|++|+|||++|.|.
T Consensus 234 ~raGA~l~dmEfiQfhPTg~~~pp~~~g~Li~E~~RG~GgiL~n~~GeRFm~~y~p~~~~~~~~~~~~~~~~~~~~~~~~ 313 (631)
T PRK07803 234 LRAGATLINMEFVQFHPTGMVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPPVFKGQYAETEEEADQWLKDNDSA 313 (631)
T ss_pred HHCCCCCCCCEEEEEEEEEECCCCCCCCEECCHHHCCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98599806977452465000258775623402644576778889998840443085666655422023443320133122
Q ss_pred --CCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf --10047520111568899881788888887468861-117989999985379999976436786544067520331001
Q gi|254781043|r 291 --AKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYL-NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNM 367 (611)
Q Consensus 291 --~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~-~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~ 367 (611)
..+|+|||+++++|+.|+++|||++.+ .||||+ +|++++.++++||.++..+....|+|+.++||||.|++||+|
T Consensus 314 ~~~~~l~prd~varai~~ei~~Grg~~~~--~v~lD~~~~~~~e~i~~~~p~~~~~~~~~~giD~~~~pi~V~P~~Hy~m 391 (631)
T PRK07803 314 RRTPDLLPRDEVARAINSEVKAGRGTPHG--GVYLDIASRLPPEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVM 391 (631)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CEEEEHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCCEEEE
T ss_conf 23201375899999999999966899888--6676143107989998758469999998639986456332366552653
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 23421577158537788853322760340212203356643047643222222321567755665420265667640023
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSC 447 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~ 447 (611)
|||+||.+ +.+|+||||||||||+ +|+|||||||||||++|+|||++||++|++|++.....+..+.+.+
T Consensus 392 GGi~vd~~---------~~~t~IpGLyAaGEva-gGvHGaNRLggNSLle~lVfGr~AG~~Aa~~~~~~~~~~~~~~~~~ 461 (631)
T PRK07803 392 GGIEVDPD---------TGAATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRALSSRPAVSDEAV 461 (631)
T ss_pred CCEEECCC---------CCCEECCCCEECCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 68067278---------8834279843346435-6767665430357888899899999999999861677889997999
Q ss_pred HHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 5788863101037---8871368999878876650972687589999999999999999841515787754588999999
Q gi|254781043|r 448 DRIMDRFDRLRHA---DGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETL 524 (611)
Q Consensus 448 ~~~~~~~~~~~~~---~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~ 524 (611)
+....++..+++. .+..+|+.++++||++||+|+||+|++++|++++++|+.|+++++++.+++ ...||++|..++
T Consensus 462 ~~~~~~~~~p~~~~~~~~~~~p~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~n~~~~~al 540 (631)
T PRK07803 462 DAAARLALAPFEGPADGGAENPYTLQMDLQQVMNDLVGIIRKEDEISQALEKLAELKERYKNVKVEG-HRQFNPGWHLAI 540 (631)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHCHHHHHHH
T ss_conf 9999998604430146787788999999999998478889878999999999999999976077686-311256789999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEEEEE----CCCCEEEEEEECCC
Q ss_conf 88889999999999996262550462353377887666880321356999984----68980599994474
Q gi|254781043|r 525 ELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVD----WNTGKIKLDYRPVH 591 (611)
Q Consensus 525 el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~~~~----~~~g~~~~~~~Pv~ 591 (611)
|++||+.+|+++++|||+|+||||+|||+|||+ ||| +|+||+++... .+.+++.+..+|..
T Consensus 541 el~nml~~a~~~~~aAL~R~ESRG~H~R~D~P~-----~D~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (631)
T PRK07803 541 DLRNMLLVSECVARAALERTESRGGHTRDDHPG-----MDP-EWRRILLVCRAAGSDPVGPEVTVTRQPQP 605 (631)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCH-HHHCEEEEEEECCCCCCCCEEEEEECCCC
T ss_conf 999999999999999871743654267878788-----794-24325799984378887870588757789
No 18
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=0 Score=1025.94 Aligned_cols=524 Identities=38% Similarity=0.608 Sum_probs=485.5
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 3105889899689999999999889829999868988521-041165342513789999999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH-TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~-s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
.++||||||||+|||+||++|++.| +|+|++|..+.+|+ |.+|+|||+++++ ++||++.|++||+++|.+++|+++
T Consensus 6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~sG~s~~a~gg~~a~~~--~~Ds~e~~~~Dt~~~g~~l~d~~l 82 (539)
T PRK06263 6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGKSGCTVMAEGGYNAVLN--PEDSFEKHFEDTMKGGAYLNDPKL 82 (539)
T ss_pred EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHHEEECC--CCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 9649899995399999999998259-9799977898999847888667715089--999999999999985268888999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
|+.++++++++|+||++||++|+++++|.+.+++|+||+ .+|++|+++.||+.|+..|.+++++.+|+++++
T Consensus 83 v~~l~~~a~~~v~~L~~~G~~f~~~~~g~~~~~~~gg~s--------~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~ 154 (539)
T PRK06263 83 VEILVKEAPKRLKDLEKFGAVFDRTEDGEIAQRPFGGQS--------FNRTCYAGDRTGHEMMMGLMEYLIKERIKILEE 154 (539)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999999999983998512799867310047854--------443223577661999999999986169779951
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 15652000134430124689805870899506724741576565433421064014448878875136533332223288
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhP 254 (611)
+.+++||++++|+|+||+++|.++|+++.|+||+|||||||++++|..+|||.++||||++||+++||+|.||||+||||
T Consensus 155 ~~~~~Ll~~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ly~~~tn~~~~TGdG~~mA~raGA~l~~mEfvQfhP 234 (539)
T PRK06263 155 VMAIKLLVDELGKVFGAVFLDLRNGDIVPIYAKSTILATGGAGQLYPITSNPIQKTGDGFAMAYRAGAELIDMEMVQFHP 234 (539)
T ss_pred EEEEEEEECCCCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHEEEC
T ss_conf 59999998179969999999778982999960569989898765687767999967299999998699726961530565
Q ss_pred CCCC----CCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf 8442----201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r 255 TGIY----GAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330 (611)
Q Consensus 255 t~~~----~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~ 330 (611)
|++. +.++|+++++|++|++|+|++|||||++|+|..+|++|||+++++|+.|+.+|++++.+ +||+|++|+++
T Consensus 235 t~~~~~~~~~g~l~~e~~rg~Gg~l~n~~GerF~~~y~p~~~el~~rd~v~~ai~~e~~~grg~~~~--~v~ld~~~l~~ 312 (539)
T PRK06263 235 TGMVYPYSGRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTPHG--GVYLDVTHLPD 312 (539)
T ss_pred CEECCCCCCCCEEECHHHCCCCCEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CEEEECCCCCH
T ss_conf 6104688886416326451688689616984801021653122332459999999999966788888--45755403998
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL 410 (611)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl 410 (611)
+.+++++|.+.+.+..+ |+||.++||||.|++||+||||+||.+++ |+||||||||||+ +|+||||||
T Consensus 313 e~~~~~~~~~~~~~~~~-giD~~~~~i~v~P~~h~~mGGi~id~~~~----------t~I~GLyAaGE~a-gG~hGanRl 380 (539)
T PRK06263 313 EVIEEKLETMLSQFLDV-GVDIRKEPMEVAPTAHHFMGGIKINEDCE----------TNIPGLFACGEVA-GGVHGANRL 380 (539)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCCEEEECCCCEECCCEEECCCCC----------CCCCCEEECCCCC-CCCCCCCCC
T ss_conf 99875408999999983-88876784588457774039989998876----------0578737756645-476889886
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r 411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL 490 (611)
Q Consensus 411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L 490 (611)
|||||++|+|||++||++|++|++.... +..+.+..+...+++..+.. ++..+|.+++++||++||+|+|++|++++|
T Consensus 381 ggnsl~e~~VfG~~Ag~~Aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L 458 (539)
T PRK06263 381 GGNALADTQVFGARAGKSAAKNAENEKD-ISKDYDQVEEEIERLESYIS-NGGINPYDLRDELKKTMWDYVGIVRDEKGL 458 (539)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCEEECHHHH
T ss_conf 0247788899999999999987650787-68996788999999864423-589998999999999998489979989999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCE
Q ss_conf 99999999999998415157877545889999998888999999999999626255046235337788766688032135
Q gi|254781043|r 491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRK 570 (611)
Q Consensus 491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~ 570 (611)
+.++.+|+.|+++ .+.+.+. ++|++++|++||+.+|+++++|||+|+||||+|||.|||+ |||+||+|
T Consensus 459 ~~al~~l~~l~~~--~~~~~~~-----~~l~~~~E~~~~l~~a~~~~~aal~R~ESRG~H~R~DyP~-----~dd~~w~~ 526 (539)
T PRK06263 459 KTALEKINELKEK--NLKINGI-----VDFSDKLELENMILVAELVVKSALLRKESRGAHYRTDYPE-----TNDEEPFG 526 (539)
T ss_pred HHHHHHHHHHHHH--CCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCHHHCC
T ss_conf 9999999999973--4557886-----7899999999999999999999975420212200877899-----98435501
Q ss_pred EEEEEEEC
Q ss_conf 69999846
Q gi|254781043|r 571 HSLCWVDW 578 (611)
Q Consensus 571 h~~~~~~~ 578 (611)
||+++++.
T Consensus 527 ~t~~~~~~ 534 (539)
T PRK06263 527 NTVASKNK 534 (539)
T ss_pred CCEEEECC
T ss_conf 60573068
No 19
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00 E-value=0 Score=999.56 Aligned_cols=532 Identities=35% Similarity=0.515 Sum_probs=465.0
Q ss_pred CEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 13323105889899689999999999889829999868988521041165342513789999999999989984588779
Q gi|254781043|r 12 TYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
+-|.++|||||||||+|||+||+++++ +++|+||+|..+.+|+|.+|+|||++++. ++||++.|++||+++|+|+||
T Consensus 5 ~~~~~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~~~g~s~~a~GGi~a~~~--~~Ds~e~h~~Dt~kaG~gl~d 81 (556)
T PRK07395 5 TQLPSQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTLKTSASDWAQGGIAAAIA--PDDSPKLHYEDTLKAGAGLCD 81 (556)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHCCCCEEECC--CCCCHHHHHHHHHHHCCCCCC
T ss_conf 458865978999963999999997235-99889998999999626676360517279--999999999999995588888
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCE
Q ss_conf 9999999998899999999869981327998551001464114567876564079866654266789999998731-230
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAE 170 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~ 170 (611)
+++++.++++++++|+||++||++|+|. ++.+.++.++||+ .+|++|++|.||+.|++.|.+++++. +|+
T Consensus 82 ~~~v~~l~~~a~~~i~~L~~~Gv~f~r~-~~~~~~~~~gghs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~ 152 (556)
T PRK07395 82 PEAVRFLVEQAPEAIASLVELGVAFDRH-GQHLALTLEAAHS--------RPRVLHAADTTGRAIVTTLTEQVLERPNIE 152 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEC-CCCEEEEECCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999999999999769970557-9944001216866--------661244577755899999999999679956
Q ss_pred EECCCEEEEEEECC-CCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCC
Q ss_conf 31131565200013-44301246898058708995067247415765654334210640144488788751365333322
Q gi|254781043|r 171 FFIEYFALDLIINS-EGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEF 249 (611)
Q Consensus 171 i~~~~~~~~Li~d~-dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf 249 (611)
++.++++++|++++ +|+|+|+.++ .+|+++.|+||+|||||||++++|..+|||+.+||||++||+++||.|.||||
T Consensus 153 i~~~~~~~~Ll~~~~~g~v~Gv~~~--~~g~~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~a~A~~aGA~l~dmEf 230 (556)
T PRK07395 153 IISQALALDLWLEPETGRCQGISLL--YQGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEF 230 (556)
T ss_pred EEEEEEEEEEEEECCCCEEEEEEEE--ECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 9888999999995589879999999--89969999789899899987112656568988766999999986997589658
Q ss_pred CCCCCCCCCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 23288844220---143045665578089832686125540765100475201115688998817888888874688611
Q gi|254781043|r 250 VQFHPTGIYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN 326 (611)
Q Consensus 250 ~qfhPt~~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~ 326 (611)
+|||||++..+ .+|++|++||+|++|+|++|||||.+|+|. +||+|||+++|+|+.|+.++.+. ....+||||++
T Consensus 231 iQfhPt~~~~~g~~~~lisea~rGeG~~l~n~~GeRFm~~y~~~-~ela~Rdvvsrai~~~~~~~~~~-~~~~~v~ld~~ 308 (556)
T PRK07395 231 FQFHPTALTKPGAPRFLISEAVRGEGAHLVDAQGRRFAFDYHPA-GELAPRDVVSRAIFSHLQKTATD-PATAHVWLDLR 308 (556)
T ss_pred HHEEEEEECCCCCCCEEECHHHCCCCEEEECCCCCCHHHCCCCC-CCCCCCHHHHHHHHHHHHHHCCC-CCCCEEEEECC
T ss_conf 73040045479985245145443787288346886845306876-55573008889999999973899-77775885046
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 17989999985379999976436786544067520331001234215771585377888533227603402122033566
Q gi|254781043|r 327 HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHG 406 (611)
Q Consensus 327 ~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hG 406 (611)
|++++.++++||.+.+.+..+ |+||.++||||.|++||+||||.||.+++ |+||||||||||||+|+||
T Consensus 309 ~~~~~~~~~~~p~i~~~~~~~-GiD~~~~~i~V~P~~Hy~mGGi~vd~~~~----------t~i~GLyAaGE~A~~GvHG 377 (556)
T PRK07395 309 PIPPERIRRRFPNIIRVCQKW-GVDVFQEPIPVAPAAHYWMGGVATDLNNQ----------TSIPGLYAVGETASTGVHG 377 (556)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEECCCCEEECCEEECCCCC----------CCCCCEECCCCCCCCCCCC
T ss_conf 689889876627999999984-97644686686356617608889898876----------4668877050435277754
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 43047643222222321567755665420265667640023578886310103788713689998788766509726875
Q gi|254781043|r 407 ANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT 486 (611)
Q Consensus 407 anrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~ 486 (611)
|||||||||++|+|||+.++..+............. .... ......+....+..++++||++||+++||+|+
T Consensus 378 anRLggnsl~e~~Vfg~~aa~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~ 449 (556)
T PRK07395 378 ANRLASNSLLECLVFAAQLANLELPPAILADSTPAL--PIIE------FASQWKQEQEQLQEIRQELPRLVWQSAGICRE 449 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHH------HHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 155677779999999999876321134556655444--3022------32212344221999999999999628981567
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf 8999999999999999984151578-------------775458899999988889999999999996262550462353
Q gi|254781043|r 487 QDSLSDGCRNLSCLWDEMADLKVHD-------------RSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARE 553 (611)
Q Consensus 487 ~~~L~~al~~L~~l~~~~~~i~~~d-------------~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~ 553 (611)
+++|++++++|+.|++++..+.+.+ ....+|.+|..++|++||+.+|+++++|||+|+||||+|||+
T Consensus 450 ~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~E~~nml~~a~~i~~aAL~R~ESRG~H~R~ 529 (556)
T PRK07395 450 ADTLQAALAQVEQWQQQLAALPLSQFLANLPPGQTVSLSGPDAEAQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRS 529 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999999999872322344430376631002653066899999999999999999999987170024002867
Q ss_pred CCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECC
Q ss_conf 3778876668803213569999846898059999447
Q gi|254781043|r 554 DFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV 590 (611)
Q Consensus 554 DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv 590 (611)
|||+ +|.||+||+++.. + +.-+.||
T Consensus 530 DyP~------~d~~w~~h~~v~~--~----~~~~~~~ 554 (556)
T PRK07395 530 DYPK------SSPNWQVHTLVQG--E----RWWTTPI 554 (556)
T ss_pred CCCC------CCHHHCCCEEEEC--C----EEEECCC
T ss_conf 8787------8956778308827--8----7663268
No 20
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00 E-value=0 Score=1000.97 Aligned_cols=514 Identities=35% Similarity=0.504 Sum_probs=453.5
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
-||+|||||||||+|||+||++|+++ ++|+||+|.++.+|+|.+|+|||+++++ ++||++.|++||+++|+|+|||+
T Consensus 5 ~~~~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~~g~s~~a~gGi~a~~~--~~Ds~e~h~~Dt~~~G~gl~d~~ 81 (535)
T PRK09077 5 PEHQCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLSEGSTFYAQGGIAAVLD--ETDSIESHVEDTLIAGAGLCDED 81 (535)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCEEEECC--CCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 87628989999539999999974038-9889997889999727887085388529--99999999999999538988999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE----EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-C
Q ss_conf 9999999889999999986998132799855----1001464114567876564079866654266789999998731-2
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKI----YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-N 168 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~----~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-g 168 (611)
+|+.++++++++|+||++|||+|+|+++|.. .+..+|||+ .+|++|++|.||+.|+..|.+++++. +
T Consensus 82 lv~~l~~~a~~~i~~L~~~Gv~f~~~~~~~~~~~~~~~r~gGhs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~ 153 (535)
T PRK09077 82 AVRFIAENAREAVQWLIDQGVPFDTDEQPNGEEGYHLTREGGHS--------HRRILHAADATGKAVQTTLVERARNHPN 153 (535)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999849956526776544221001357866--------6755215898689999999999970899
Q ss_pred CEEECCCEEEEEEECC-----CCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCC
Q ss_conf 3031131565200013-----44301246898058708995067247415765654334210640144488788751365
Q gi|254781043|r 169 AEFFIEYFALDLIINS-----EGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLP 243 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~-----dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~ 243 (611)
|++++++.+++||+++ +|+|+||+++|..+|+++.|+||+|||||||++++|.++|||+++||||++||++|||.
T Consensus 154 i~~~~~~~~~~Li~~~~~~~~~~~v~Ga~~~d~~~g~~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~amA~raGA~ 233 (535)
T PRK09077 154 ITVLERHNAIDLITSDKLGLPGRRVVGAYVWNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCR 233 (535)
T ss_pred CEEEECEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 78995207889998424456698799899997789938999707699946998545356669998647899999985998
Q ss_pred CCCCCCCCCCCCCCCC---CEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCE
Q ss_conf 3333222328884422---0143045665578089832686125540765100475201115688998817888888874
Q gi|254781043|r 244 LQDMEFVQFHPTGIYG---AGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDH 320 (611)
Q Consensus 244 l~~mEf~qfhPt~~~~---~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~ 320 (611)
|.||||+|||||+++. +++|++|++||+|++|+|++|||||++|+| .+||+|||+++|+|+.|+++ + +..+
T Consensus 234 l~dmEfiQfhPt~l~~p~~~~~lisea~rgeG~~l~n~~Gerfm~~~~~-~~elapRdvvarai~~e~~~-~----g~~~ 307 (535)
T PRK09077 234 VANMEFNQFHPTCLYHPQARSFLITEALRGEGAYLKLPDGTRFMPDFDE-RAELAPRDIVARAIDHEMKR-L----GADC 307 (535)
T ss_pred CCCCCHHHHCCCEEECCCCCCEEECHHHCCCCCEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHH-H----CCCE
T ss_conf 5782077537764645887763424533476647556887715656787-44322456999999999997-4----9975
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf 68861117989999985379999976436786544067520331001234215771585377888533227603402122
Q gi|254781043|r 321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG 400 (611)
Q Consensus 321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a 400 (611)
||||++|++++.++++||.+++.+.. .|+||.++||||.|++||+||||+||.+++ |+|||||||||||
T Consensus 308 v~lD~~~~~~~~i~~~~p~~~~~~~~-~GiD~~~~~ipV~P~~Hy~mGGi~vD~~~~----------T~I~GLyAaGEva 376 (535)
T PRK09077 308 VYLDISHKPADFIRQHFPTIYARCLE-LGIDITKEPIPVVPAAHYTCGGVMVDLHGR----------TDLDGLYAIGEVS 376 (535)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCCCEECCCEEECCCCE----------ECCCCEEECCCCC
T ss_conf 86021348579987654899999997-299875573688625554038988899964----------1778737645323
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 03356643047643222222321567755665420265667640023578886310103788713689998788766509
Q gi|254781043|r 401 CASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480 (611)
Q Consensus 401 ~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~ 480 (611)
|+|+|||||||||||++|+|||++||++++............. ..+ .. ++...+....+...+++||++||++
T Consensus 377 ~~GvHGANRLggnSL~e~~VfG~~A~~~i~~~~~~~~~~~~~~--~~~--~~---~~~~~~~~~~~~~~~~~lr~~m~~~ 449 (535)
T PRK09077 377 YTGLHGANRMASNSLLECLVYGRSAAEDIESRLPKAPLPPTLP--AWD--ES---RVTDSDEEVVIQHNWHELRLFMWDY 449 (535)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCH--HH---HCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 2676665312344699999999999999986233456754565--320--22---0357531001345799999999804
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf 72687589999999999999999841515787754588999999888899999999999962625504623533778876
Q gi|254781043|r 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEF 560 (611)
Q Consensus 481 ~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~ 560 (611)
+||+|++++|++++.+|+.|++++.......+ .+. +.+|++||+.+|+++++|||+|+||||+|||.||||
T Consensus 450 ~Gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~---~~~---~~lel~n~l~~a~~i~~aAl~R~ESRG~H~R~DyPe--- 520 (535)
T PRK09077 450 VGIVRTTKRLERALHRITLLQQEIDEYYANFR---VSN---NLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPE--- 520 (535)
T ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHHCCC---CCH---HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC---
T ss_conf 78378899999999999999999999863156---776---799999999999999999985111532006857898---
Q ss_pred CCCCCHHHCEEEEE
Q ss_conf 66880321356999
Q gi|254781043|r 561 GGRDDVNWRKHSLC 574 (611)
Q Consensus 561 ~~rDD~nwl~h~~~ 574 (611)
|||+ |.+++++
T Consensus 521 --~d~e-~~~~i~~ 531 (535)
T PRK09077 521 --LLPE-AGPTILS 531 (535)
T ss_pred --CCCC-CCCCEEC
T ss_conf --8986-6876308
No 21
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=999.96 Aligned_cols=510 Identities=38% Similarity=0.572 Sum_probs=454.8
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCHHCCCCEEEECCCCCCC-CHHHHHHHHHHHCCCCCCHH
Q ss_conf 3105889899689999999999889829999868-988521041165342513789999-99999998998458877999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKV-FPTRSHTVAAQGGIAASLANMTPD-SWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~-~~~~g~s~~A~GGi~a~~~~~~~D-s~~~~~~Dt~~~g~~l~d~~ 93 (611)
+++||+|||||+|||+||+++++++.+|+||+|. +...|+|.||||||++++.+. | |++.|++||+++|+|+||++
T Consensus 1 ~~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~--DdSi~~Hv~DTL~AGaG~cD~~ 78 (546)
T TIGR00551 1 SEADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAET--DDSIDAHVEDTLAAGAGLCDEE 78 (546)
T ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCC--CCCHHHHHHHHHHHCCCCCCHH
T ss_conf 96359997520899999985332686378975875555675200011266303875--5856877899998446788688
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CEEEECCCCCCCCCCCCCCCCEEEEEC-CCCCHHHHHHHHHHHH-HC
Q ss_conf 99999998899999999869981327998----551001464114567876564079866-6542667899999987-31
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAG----KIYQRPFGGHMQNYGEGPPVQRTCAAA-DRTGHAILHTLYGQAL-KN 167 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G----~~~~~~~gg~~~~~~~g~~~~R~~~~~-d~tG~~i~~~L~~~~~-~~ 167 (611)
.|+.++.++.++|+||.+.||+|+++..| .+.++.+|||+ ++|++|++ |.||+.|+..|.+++. +.
T Consensus 79 aV~~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS--------~~RI~HA~GDaTGr~~~~~L~~~a~~~p 150 (546)
T TIGR00551 79 AVEFVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHS--------YRRILHAAGDATGREVISTLLKKARSEP 150 (546)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCC--------CCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999853689999998669220267798874431001335667--------7742773576324899999999974377
Q ss_pred CCEEECCCEEEEEEEC------CCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHC
Q ss_conf 2303113156520001------3443012468980587089950672474157656543342106401444887887513
Q gi|254781043|r 168 NAEFFIEYFALDLIIN------SEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAG 241 (611)
Q Consensus 168 gv~i~~~~~~~~Li~d------~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aG 241 (611)
.|+++.+..+.+|+++ .+|+|+|+.+++...+.+.+++|++|||||||+++||.+||||..+||||++||||+|
T Consensus 151 ~~~~~~~~~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g~ly~~TTNp~~stGDGIala~raG 230 (546)
T TIGR00551 151 NVEIIEGEVALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLGKLYSFTTNPKVSTGDGIALAWRAG 230 (546)
T ss_pred CEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf 62410121444444225024798887999999716787237763010003207732100312388742314689998728
Q ss_pred CCCCCCCCCCCCCCCCCC-----CEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCC
Q ss_conf 653333222328884422-----014304566557808983268612554076510047520111568899881788888
Q gi|254781043|r 242 LPLQDMEFVQFHPTGIYG-----AGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGK 316 (611)
Q Consensus 242 a~l~~mEf~qfhPt~~~~-----~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~ 316 (611)
++|+||||+|||||.++. +.+|||||+|||||+|++.+|+|||.+|+|. +||+|||||||+|+.+|+++.. ++
T Consensus 231 ~~v~DLEF~QFHPT~L~~~~~GG~~~LitEAvRGEGA~Lvd~~G~Rf~~~~hp~-GeLAPRDiVaRAI~~~m~~~~~-dP 308 (546)
T TIGR00551 231 VEVRDLEFVQFHPTALVKPRVGGRYFLITEAVRGEGAILVDRDGKRFMADVHPR-GELAPRDIVARAIDEEMKKGGK-DP 308 (546)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCC-CC
T ss_conf 722046342567211137887898764001100387423558886702677888-8767404889999999972287-93
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEC
Q ss_conf 88746886111798999998537999997643678654406752033100123421577158537788853322760340
Q gi|254781043|r 317 SKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAI 396 (611)
Q Consensus 317 ~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAa 396 (611)
...+||||+++++.|.++.|||.|+..|+. .||||.++||||.|++||+||||.||.||| |.||||||+
T Consensus 309 tqacVfLD~s~Ie~~~f~~RFP~I~~~c~~-~GID~~~~~IPv~P~AHY~~GGi~vD~~g~----------T~~~GLYAi 377 (546)
T TIGR00551 309 TQACVFLDASGIEDDFFKSRFPTITAKCRG-AGIDIVREPIPVVPAAHYTMGGISVDAYGR----------TTVPGLYAI 377 (546)
T ss_pred CEEEEEEECCCCCHHHHHCCCCHHHHHHHH-CCCCCCCCCCCCCCCCCEEECCEEECCCCE----------ECCCCEEEE
T ss_conf 406888743588834652127278999985-788755587154466715736788757633----------213430120
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHCCCCCC-CCCCHHHHHHHH
Q ss_conf 2122033566430476432222223215677556654202--6566764002357888631010378-871368999878
Q gi|254781043|r 397 GEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS--SPIPSLDISSCDRIMDRFDRLRHAD-GHVPTAALREKM 473 (611)
Q Consensus 397 Ge~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~i~~~L 473 (611)
||+||+|+||||||.||||+||+|||..|+++++...-.. ... ... . ..+.. .....+ .......-+.++
T Consensus 378 GE~A~tGlHGANRLASNSLLEclV~G~~aa~~i~~~~~~~Grs~~-~~~--~---~~~e~-~~~~~~~d~~~Lq~~~~~~ 450 (546)
T TIGR00551 378 GEVACTGLHGANRLASNSLLECLVFGLRAARAISRKPPAAGRSDE-SSS--A---LWDEP-RSETPDIDRAELQHKMSEL 450 (546)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HCC--C---CCCCC-EEECCCCCHHHHHHHHHHH
T ss_conf 024306651146777787889987328999998653553366510-026--6---65541-3423775145664576688
Q ss_pred HHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCC-------CC------CCCCCCCCHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 8766509726875899999999999999998415-------15------7877545889999-99888899999999999
Q gi|254781043|r 474 QRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADL-------KV------HDRSLIWNSDLVE-TLELQNLMINAIATVYS 539 (611)
Q Consensus 474 q~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i-------~~------~d~~~~~n~el~~-~~el~~~l~~Ae~~~~a 539 (611)
+.+||+++|++|..+.|+.++.++..+++++.+. ++ ...+...| |+|+ .+|+.|++++|++|+.|
T Consensus 451 ~~~~w~~aGi~R~~~~L~~a~~~~~~~~~~~~~~ssskl~AHlPedq~~S~~GPGln-efmql~~El~~L~~vA~l~~~s 529 (546)
T TIGR00551 451 RSLLWEAAGIVRLSESLEEALRKLVEVQEEVDELSSSKLLAHLPEDQKVSLSGPGLN-EFMQLLLELRNLLQVAKLVTIS 529 (546)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999997401445578987877899999999987544444212763341326788778-9999999999899999999999
Q ss_pred HHCCCCCCCCEECCCCC
Q ss_conf 96262550462353377
Q gi|254781043|r 540 AEARKESRGSHAREDFK 556 (611)
Q Consensus 540 al~R~ESRG~H~R~DyP 556 (611)
||+|+||||+|||.|||
T Consensus 530 AL~R~ESRG~H~R~DyP 546 (546)
T TIGR00551 530 ALLREESRGAHYRLDYP 546 (546)
T ss_pred HHCCCCCCCCCCCCCCC
T ss_conf 75043346765457889
No 22
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=991.44 Aligned_cols=553 Identities=55% Similarity=0.855 Sum_probs=523.8
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC---CCCHHHHHHHHHHHCCCC
Q ss_conf 33231058898996899999999998898299998689885210411653425137899---999999999899845887
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT---PDSWQWHLYDTIKGSDWL 89 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~---~Ds~~~~~~Dt~~~g~~l 89 (611)
.+.++|||||||+|+|||+||++|++.|++|+|+||.++.||+|.+|+||+++++++.. .|||+.|+.||+++++++
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l 81 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL 81 (562)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 53211698998784888999999996699579997236889853214565302146665456899899999998743676
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CC
Q ss_conf 79999999999889999999986998132799855100146411456787656407986665426678999999873-12
Q gi|254781043|r 90 GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NN 168 (611)
Q Consensus 90 ~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~g 168 (611)
+||++++.||+++|++|+||++||+||+|+++|.+++|+|+||+. +|+++++++||+.|++.|++++++ .+
T Consensus 82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~--------~rt~~~~~~tG~~ll~~L~~~~~~~~~ 153 (562)
T COG1053 82 GDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSK--------PRTCFAADKTGHELLHTLYEQLLKFSG 153 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 789999999986379999999808975447876600234688888--------763225666758999999999876313
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCC
Q ss_conf 30311315652000134430124689805870899506724741576565433421064014448878875136533332
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME 248 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mE 248 (611)
+++++++++++|++++++.|.|++++++++|+++.|+||+||+||||++++|..+||+..+||||++|++++||.|.|||
T Consensus 154 ~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme 233 (562)
T COG1053 154 IEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDME 233 (562)
T ss_pred CHHHCCCEEHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 11110021021223179857889999547884899814648993387447773478754557858999996598213688
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCC--CCCCCCCCCCCCEEHHHHHHHHHHCCCC-CCCCCEEEEEE
Q ss_conf 22328884422014304566557808983268612554--0765100475201115688998817888-88887468861
Q gi|254781043|r 249 FVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMER--YAPSAKDLASRDVVSRCMMMEIREGRGV-GKSKDHIHLYL 325 (611)
Q Consensus 249 f~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~--y~~~~~el~~rd~~s~ai~~ei~~g~g~-~~~~~~v~ld~ 325 (611)
|+|||||++.+.++|++|++|++||+++|++|+|||++ |+|..++|+|||+++++|+.||.+|+++ .+....+|+|+
T Consensus 234 ~~Q~hpt~~~~~g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~v~ldl 313 (562)
T COG1053 234 FVQFHPTGLVGSGILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYLDL 313 (562)
T ss_pred CCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 62364128757642787630257985876861167212356665444578651778999998637874668775678763
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r 326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH 405 (611)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h 405 (611)
+|++++.+.+++|.+.+.++.+.|+||.++|+||.|++||+||||++|. ++ +.|.||||||||||+|..+|
T Consensus 314 ~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~-~~--------~~t~i~GLfAaGe~~~~~~h 384 (562)
T COG1053 314 RHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNT-GR--------VETKIPGLFAAGEAAGVSHH 384 (562)
T ss_pred CCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCC-CC--------CCCCCCCEEEEEEEEECCCC
T ss_conf 3357677764074046676650698855450472032046378842274-43--------55777766863212104336
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 64304764322222232156775566542026566764002357888631010378871368999878876650972687
Q gi|254781043|r 406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFR 485 (611)
Q Consensus 406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R 485 (611)
|+||||+|||++|+|||++||..|++|+......+ +.+..++..+++.++...+++.++.+++++||++|+++++|+|
T Consensus 385 GanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R 462 (562)
T COG1053 385 GANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP--PASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFR 462 (562)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 66568866417888887998899999997506898--4267899999999998615898889999999998607864036
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 58999999999999999984151578775458899999988889999999999996262550462353377887666880
Q gi|254781043|r 486 TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD 565 (611)
Q Consensus 486 ~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD 565 (611)
+.+.|++++.+|++|+++++++.+.|.+..+|++|.+++|+.|||++|++++.+|+.|+||||+|+|+|||+ |||
T Consensus 463 ~~~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~-----rdD 537 (562)
T COG1053 463 NEEGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPE-----RDD 537 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CCH
T ss_conf 889999999999999977545374360554321245556289899999999999865776777546887775-----647
Q ss_pred HHHCEEEEEEEECCCCEEEEEEECCCC
Q ss_conf 321356999984689805999944744
Q gi|254781043|r 566 VNWRKHSLCWVDWNTGKIKLDYRPVHT 592 (611)
Q Consensus 566 ~nwl~h~~~~~~~~~g~~~~~~~Pv~~ 592 (611)
+||+||++++++. ++++.|+||..
T Consensus 538 ~~w~kht~~~~~~---~~~~~~~~v~~ 561 (562)
T COG1053 538 ENWLKHTLASYDK---KPRLEYEPVKI 561 (562)
T ss_pred HHHHHHHHHHCCC---CCCEEEEECCC
T ss_conf 8999999871488---67423230355
No 23
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00 E-value=0 Score=966.27 Aligned_cols=490 Identities=34% Similarity=0.470 Sum_probs=438.4
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 332310588989968999999999988982999986898-8521041165342513789999999999989984588779
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP-TRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~-~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
+.+.++||||||||+|||+||++++++ +|+||+|.+. .+++|.+|||||+++++ ++||++.|++||+++|+|+||
T Consensus 5 ~~~~~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~~~g~ss~~AqGGi~a~~~--~~Ds~e~h~~Dtl~aG~gl~d 80 (507)
T PRK07512 5 LDDLTGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPLGEGASSAWAQGGIAAALG--PDDSPALHAADTLAAGAGLCD 80 (507)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCCCCCCCHHHHCCCEEEECC--CCCCHHHHHHHHHHHCCCCCC
T ss_conf 665369989999669999999983307--8399990588999626675245146069--999999999999996478788
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CCCCCHHHHHHHHHHHHHC-CC
Q ss_conf 999999999889999999986998132799855100146411456787656407986-6654266789999998731-23
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-ADRTGHAILHTLYGQALKN-NA 169 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d~tG~~i~~~L~~~~~~~-gv 169 (611)
+++|+.+++++++.|+||++|||||+|+++|.+.++.++||+ .+|++|+ +|.||++|++.|.+++++. +|
T Consensus 81 ~~~v~~l~~~a~~~i~~L~~~Gv~F~r~~~G~~~~~~~ggHs--------~~R~~~~~gd~tG~~i~~~L~~~~~~~~~I 152 (507)
T PRK07512 81 EAVARRIAAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHS--------RRRIVHVGGDGAGAAIMRALIAAVRATPSI 152 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 999999999899999999980993644788751145665567--------872787458874369999999999827994
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCC
Q ss_conf 03113156520001344301246898058708995067247415765654334210640144488788751365333322
Q gi|254781043|r 170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEF 249 (611)
Q Consensus 170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf 249 (611)
+++.++.+++||++ +|+|+|+++ ..+|+++.|+||+|||||||++++|..+|||+++||||++||+++||.|.||||
T Consensus 153 ~i~~~~~~~~Ll~~-~g~v~Gv~~--~~~g~~~~i~A~aVILATGG~g~ly~~tTn~~~~TGdG~amA~~aGA~l~dmEf 229 (507)
T PRK07512 153 TVLEGAEARRLLVE-DGAVAGVLL--ATAGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVLADPEF 229 (507)
T ss_pred EEEEEEEEEEEEEC-CCEEEEEEE--ECCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 49998998887753-880789999--738988999828699888977566776779998673999999985998358458
Q ss_pred CCCCCCCCCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 23288844220---143045665578089832686125540765100475201115688998817888888874688611
Q gi|254781043|r 250 VQFHPTGIYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN 326 (611)
Q Consensus 250 ~qfhPt~~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~ 326 (611)
||||||++..+ .+|++|++||+|++|+|++|+|||.+| | ..||+|||+++|+|+.|+++|++ ||||++
T Consensus 230 vQfhPt~l~~~~~~~~L~sea~rGeGa~l~n~~G~RFm~~y-~-~~eLa~RDvvarAi~~e~~~g~~-------v~lD~~ 300 (507)
T PRK07512 230 VQFHPTALDIGRDPAPLATEALRGEGAILINERGERFMADI-P-GAELAPRDVVARAVFAEIAAGRG-------VFLDAR 300 (507)
T ss_pred HHHCCCEECCCCCCCCEECHHHCCCCCEEECCCCCCCHHHC-C-CCCCCHHHHHHHHHHHHHHHCCC-------EEEECC
T ss_conf 76177100379985435222101477278777877844216-7-40147077999999999983892-------599766
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 17989999985379999976436786544067520331001234215771585377888533227603402122033566
Q gi|254781043|r 327 HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHG 406 (611)
Q Consensus 327 ~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hG 406 (611)
|++.+.+.++||.+.+.+.. .|+||.++||||.|++||+||||+||.+++ |+||||||||||||+|+||
T Consensus 301 ~~~~~~~~~~~p~i~~~~~~-~GiD~~~~~ipV~P~aHy~mGGi~vD~~~~----------T~IpGLyAaGEvA~~G~HG 369 (507)
T PRK07512 301 AALGAHFATRFPTVYAACRS-AGIDPARQPIPVRPAAHYHMGGIAVDADGR----------SSLPGLWAAGEVASTGLHG 369 (507)
T ss_pred CCCHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCCCEECCCEEECCCCC----------CCCCCCCCCCCCCCCCCCC
T ss_conf 66777775650899999998-099976674466522226369946898887----------0722301046655467665
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 43047643222222321567755665420265667640023578886310103788713689998788766509726875
Q gi|254781043|r 407 ANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT 486 (611)
Q Consensus 407 anrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~ 486 (611)
|||||||||++|+|||++||++++++....... ..... ....+....++||++||+++||+|+
T Consensus 370 ANRLggnSLle~~VfG~~ag~~~a~~~~~~~~~--~~~~~---------------~~~~~~~~~~~lr~~m~~~~gi~R~ 432 (507)
T PRK07512 370 ANRLASNSLLEAVVFAARVAEDIAGTPAAAARP--LGAEP---------------APALDPADPALLRPIMSRHVGVLRD 432 (507)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCC---------------CCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 421034678999999999999997531035676--66665---------------6666621199999999837885888
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH
Q ss_conf 89999999999999999841515787754588999999888899999999999962625504623533778876668803
Q gi|254781043|r 487 QDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV 566 (611)
Q Consensus 487 ~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~ 566 (611)
+++|++++++|+.|+++.. ++.||+.+|++|++|||+|+||||+|||+|||+ |||+
T Consensus 433 ~~~L~~al~~l~~l~~~~~-------------------~~~~~l~~a~~i~~aAl~R~ESRG~H~R~DyP~-----~d~~ 488 (507)
T PRK07512 433 ADGLRRAIRALLPLEAGAG-------------------PAADPATVALLIAVAALAREESRGAHFRTDFPL-----TLPA 488 (507)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCH
T ss_conf 9999999999999997545-------------------445399999999999861511332018767899-----7804
Q ss_pred HHCEEEEEEEECC
Q ss_conf 2135699998468
Q gi|254781043|r 567 NWRKHSLCWVDWN 579 (611)
Q Consensus 567 nwl~h~~~~~~~~ 579 (611)
|.+|+++.++..
T Consensus 489 -~~~~~l~~~~~~ 500 (507)
T PRK07512 489 -AARRTLTLLDAA 500 (507)
T ss_pred -HCCEEEEEHHHH
T ss_conf -507589714468
No 24
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00 E-value=0 Score=955.02 Aligned_cols=521 Identities=34% Similarity=0.461 Sum_probs=459.7
Q ss_pred CCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 05344133231058898996899999999998898299998689885210411653425137899999999999899845
Q gi|254781043|r 7 LKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGS 86 (611)
Q Consensus 7 ~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g 86 (611)
+-..||.-++++||||||||+|||+||++|+++|++|+|++|+++.+|+|.+|+|||+++.. ..+||++.|++||+++|
T Consensus 5 ~~~~~~~~~~~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~~g~s~~a~gGi~a~~~-~~~Ds~e~~~~dt~~~g 83 (533)
T PRK07804 5 LMAPAPGWRDAADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALTATATRYAQGGIAVVLP-DPGDSVDAHVADTLAAG 83 (533)
T ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHEEECC-CCCCCHHHHHHHHHHHC
T ss_conf 56999997622688999964999999999986799889997889999707998687788457-99999999999999853
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CCCCCHHHHHHHHHHHH
Q ss_conf 88779999999999889999999986998132799855100146411456787656407986-66542667899999987
Q gi|254781043|r 87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-ADRTGHAILHTLYGQAL 165 (611)
Q Consensus 87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d~tG~~i~~~L~~~~~ 165 (611)
+|++||++|+.++++++++|+||++||++|+++++|.+.++.++||+ .+|++|+ +|.||..+++.|.++++
T Consensus 84 ~gl~d~~~v~~l~~~a~~~v~~L~~~G~~f~~~~~G~~~~~~~gGh~--------~~R~~~~~~d~~G~~i~~~l~~~~~ 155 (533)
T PRK07804 84 AGLCDPDAVRSIVADGPRAVRELVALGARFDESPPGRWALTREGGHS--------RRRIVHAGGDATGAEVQRALDAAAR 155 (533)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC--------CCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 78789999999999999999999983983654899847777327876--------6535613888618999999999850
Q ss_pred HCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCC
Q ss_conf 31230311315652000134430124689805870899506724741576565433421064014448878875136533
Q gi|254781043|r 166 KNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQ 245 (611)
Q Consensus 166 ~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~ 245 (611)
+++++.++.+++||+| ++.|.|+. ....++ +..|+||+|||||||++++|..+|||+++||||++||+++||.|.
T Consensus 156 --~v~i~~~~~~~~ll~d-~~~v~gv~-~~~~~~-~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~~mA~~aGA~l~ 230 (533)
T PRK07804 156 --MLDIRENHVALDLLHD-GRAVTGVL-VGSPDG-VGAVHAPAVVLATGGLGQLYSATTNPAGSTGDGVALALWAGAAVS 230 (533)
T ss_pred --CCCEEEEEEEEEEEEC-CCEEEEEE-EEECCC-EEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf --7607950699999806-99899999-984896-799991979986899756675556899966589999998499858
Q ss_pred CCCCCCCCCCCCCCC-----EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCE
Q ss_conf 332223288844220-----143045665578089832686125540765100475201115688998817888888874
Q gi|254781043|r 246 DMEFVQFHPTGIYGA-----GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDH 320 (611)
Q Consensus 246 ~mEf~qfhPt~~~~~-----~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~ 320 (611)
||||+|||||+++.+ .+|+++++|++|++|+|++|+|||++|+| .+|++|||+++++|+.++++. +..+
T Consensus 231 dmEfiQf~Pt~~~~~~~~g~~~l~te~~rg~Ga~l~n~~G~rfm~~~~p-~~ela~rdvv~~ai~~~~~~~-----g~~~ 304 (533)
T PRK07804 231 DLEFVQFHPTMLFLGADGGRRPLISEAVRGEGAILVDAQGNSVTAGVHP-LGDLAPRDVVAAAIDARLKAT-----GDPC 304 (533)
T ss_pred CCCHHHEECCEECCCCCCCCCCEECHHHCCCCEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHC-----CCCE
T ss_conf 9624210043122687666551442212368759977888661014574-333323557789999999852-----9965
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf 68861117989999985379999976436786544067520331001234215771585377888533227603402122
Q gi|254781043|r 321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG 400 (611)
Q Consensus 321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a 400 (611)
||||++|++ .++++||.+...++. .|+||.++||||.|++||+||||+||.+++ |+|||||||||||
T Consensus 305 v~lD~~~~~--~~~~~~p~~~~~~~~-~GiD~~~~~i~V~p~~H~~mGGi~vD~~~~----------T~IpGLyAaGEva 371 (533)
T PRK07804 305 VYLDARHIG--GFARRFPTITASCRA-AGIDPVRQPIPVAPGAHYSCGGVVTDVYGR----------TEVPGLYAAGEVA 371 (533)
T ss_pred EEEECCCHH--HHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCCCCCCEEECCCCC----------CCCCCCEECCCCC
T ss_conf 775035369--999975799999997-389865661456526640148866788886----------0877846257755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 03356643047643222222321567755665420265667640023578886310103788713689998788766509
Q gi|254781043|r 401 CASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480 (611)
Q Consensus 401 ~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~ 480 (611)
|+|+|||||||||||++|+|||++||++|++++..... +...... ........+...+++||++||+|
T Consensus 372 ~~G~hGAnRLggnsl~e~~VfG~~Ag~~aa~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~lq~~m~~~ 439 (533)
T PRK07804 372 RTGVHGANRLASNSLLEGLVVGGRAGAAAAAHAAAAGR-PRATAAA-----------TGPEPILLPALDRAELQRAMTRG 439 (533)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-----------CCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 47776523477778999999999999999975440577-6667200-----------14455678768999999999848
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf 72687589999999999999999841515787754588999999888899999999999962625504623533778876
Q gi|254781043|r 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEF 560 (611)
Q Consensus 481 ~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~ 560 (611)
+|++|++++|++++++|+.++.+.. .....+|+.||+.+|+++++|||+|+||||+|||+||||
T Consensus 440 ~gi~R~~~~L~~~~~~l~~~~~~~~-------------~~~~~~E~~~~l~~A~~i~~aAL~R~ESRG~H~R~DyPe--- 503 (533)
T PRK07804 440 ASVLRDAAGLARLADRLAAAPARVV-------------AGRADWEDTALTLVARALVAAALARTESRGCHHREDFPD--- 503 (533)
T ss_pred CCEEECHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC---
T ss_conf 8699979999999999997455350-------------557669999999999999999861553341017787899---
Q ss_pred CCCCCHHHCEEEEEEEECCCCEEEEEEECCC
Q ss_conf 6688032135699998468980599994474
Q gi|254781043|r 561 GGRDDVNWRKHSLCWVDWNTGKIKLDYRPVH 591 (611)
Q Consensus 561 ~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~ 591 (611)
|||+||+||+++++ .+.|++++.++|+.
T Consensus 504 --~dd~~~~~~~~~~~-dd~g~~~~~~~~~~ 531 (533)
T PRK07804 504 --TDDEQARSHVVRLA-DDGGAVLVQALAAV 531 (533)
T ss_pred --CCHHHHHHHEEEEE-CCCCEEEEECCCCC
T ss_conf --78266440288998-79970899504666
No 25
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00 E-value=0 Score=954.05 Aligned_cols=498 Identities=37% Similarity=0.547 Sum_probs=442.9
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
++||||||||+|||+||++|++. .+|+||+|.++.+|+|.+|+|||+++... .|||+.|++||+++|+++||+++|+
T Consensus 3 ~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~~~~s~~a~Ggi~a~~~~--~Ds~e~~~~Dt~~aG~gl~d~~~v~ 79 (510)
T PRK08071 3 SADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKRNSNSHLAQGGIAAAVAT--YDSPNDHFEDTLVAGCHHNNEEAVR 79 (510)
T ss_pred CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCCCEECCC--CCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 79999999659999999983658-98799979899997425645443171389--9999999999999637888899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9999889999999986998132799855100146411456787656407986-665426678999999873123031131
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-ADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
.+++++++.|+||++||+||+++++|.+.++.+|||+ .+|++|. +|.||+.|++.|.+++. .+|+++.++
T Consensus 80 ~l~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~ggh~--------~~R~~~~~gd~tG~~i~~~l~~~~~-~~i~i~~~~ 150 (510)
T PRK08071 80 YLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHR--------KRRILHAGGDATGKNLLEHLIQEVV-PHVTVVEQE 150 (510)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 9999899999999975996512888645125277516--------8601421776303899999999705-881899747
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 56520001344301246898058708995067247415765654334210640144488788751365333322232888
Q gi|254781043|r 176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt 255 (611)
.+++||++ ||+|+||+++| .+|+++.|+||+|||||||++++|.++||++++||||++||++|||.|.||||+|||||
T Consensus 151 ~~~~ll~~-dg~v~G~~~~~-~~g~~~~~~AkaVIlATGG~g~ly~~ttn~~~~TGdG~amA~~aGA~l~~mEfiQ~hPt 228 (510)
T PRK08071 151 MVIDLIIE-DGRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDETITGDGLAMAYRAGAELVDLEFVQFHPT 228 (510)
T ss_pred EEEEEEEE-CCEEEEEEEEC-CCCCEEEEEECEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCC
T ss_conf 98888734-89089999992-89988999827799856886301524558999686899999985997268517754775
Q ss_pred CCCCCE---EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 442201---43045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r 256 GIYGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV 332 (611)
Q Consensus 256 ~~~~~~---~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~ 332 (611)
.++.++ .|++|++||+|++|+|.+|+|||++|+|. +||+|||+++++|+.|+.+|. +||||+++++.
T Consensus 229 ~~~~~~~~~~l~~ea~rg~G~~l~n~~G~rf~~~~~~~-~elaprdvvarai~~e~~~g~-------~vyld~~~~~~-- 298 (510)
T PRK08071 229 MLYANGRCCGLVSEAVRGEGAVLINEKGQRFMMGIHPL-ADLAPRDVVARAIHEELLSGE-------KVYLNISSIQN-- 298 (510)
T ss_pred CCCCCCCCCEECCHHCCCCCCEEECCCCCCHHHCCCCC-CCCCHHHHHHHHHHHHHHCCC-------EEEECCHHHHH--
T ss_conf 00479852100134201688544667757722135842-110267899999999997389-------15740402599--
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r 333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS 412 (611)
Q Consensus 333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg 412 (611)
++++||.+.+.++. .|+||.+++|||.|++||+||||+||.+++ |+||||||||||||+|+||||||||
T Consensus 299 ~~~~~p~i~~~~~~-~giD~~~~~ipv~p~~Hy~mGGi~vd~~~~----------T~IpGLyAaGEva~~G~HGanRLgg 367 (510)
T PRK08071 299 FEERFPTISALCEK-NGVDIEKKRIPVVPGAHFLMGGVKTNEDGE----------TSIPNLYAIGEVACTGVHGANRLAS 367 (510)
T ss_pred HHHHHHHHHHHHHH-HCCCCCCCCEEEECCCCCCCCCEEECCCCC----------CCCCCEEEEECCCCCCCCCCCCHHH
T ss_conf 99871359999998-299865773346436560268868998987----------5678879730544277775524366
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 43222222321567755665420265667640023578886310103788713689998788766509726875899999
Q gi|254781043|r 413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSD 492 (611)
Q Consensus 413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~ 492 (611)
|||++|+|||++||+++..........+.. +.... ....++...+++||++||+|+|++|++++|++
T Consensus 368 nsl~e~~VfG~~A~~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~ 434 (510)
T PRK08071 368 NSLLEGLVFGKRIAEHILTKATNDRLNPFA-----EKEKK--------FIVLNHLPTKEEIQEKMMKYVGIVRTEQSLSE 434 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCHHH--------HCCCCCHHHHHHHHHHHHHCCCEEECHHHHHH
T ss_conf 569999999999999997421466555445-----40122--------10358757999999999828887987999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEE
Q ss_conf 99999999999841515787754588999999888899999999999962625504623533778876668803213569
Q gi|254781043|r 493 GCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHS 572 (611)
Q Consensus 493 al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~ 572 (611)
++++|+.+..+.... .+++.+.+.+|+.||+++|+++++|||+|+||||+|||+|||+ .||+||+
T Consensus 435 al~~l~~~~~~~~~~-------~~~~~~~~~~E~~n~l~~a~~i~~aAl~R~ESRG~H~R~DyP~--------~nw~~~~ 499 (510)
T PRK08071 435 AKRWLEKYGVRNMIL-------QVDALTNEEIELSNMLTVAKLIVVSALQRTESRGGHYRSDYPH--------RNWVGKE 499 (510)
T ss_pred HHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------CCCCCCE
T ss_conf 999999624443135-------5240118999999999999999999970122364647678897--------5526566
Q ss_pred EEEEE
Q ss_conf 99984
Q gi|254781043|r 573 LCWVD 577 (611)
Q Consensus 573 ~~~~~ 577 (611)
++..+
T Consensus 500 ~~~~~ 504 (510)
T PRK08071 500 IVRTK 504 (510)
T ss_pred EEEEC
T ss_conf 88637
No 26
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=949.55 Aligned_cols=498 Identities=39% Similarity=0.589 Sum_probs=440.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
||||||||+|||++|+++++. .+|+||+|.+...++|.||||||++++++ +||++.|+.||+++|+|+||++.|+.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~--~Ds~~~Hv~DTL~AG~glcD~~aV~~i 85 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSE--DDSPELHVADTLAAGAGLCDEEAVEFI 85 (518)
T ss_pred CEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCCCCCCHHHCCCEEEEECC--CCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 589988759999999737777-84799957778876236543755766179--998788888899854777869999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEECCCEE
Q ss_conf 99889999999986998132799855100146411456787656407986665426678999999873-12303113156
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFA 177 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~~~~~ 177 (611)
+.+++++|+||+++||+|+|+++|.+.+..+|||+. +|++|++|.||++|+.+|.+++++ .+|++++++.+
T Consensus 86 v~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~--------rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a 157 (518)
T COG0029 86 VSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSR--------RRILHAADATGKEIMTALLKKVRNRPNITVLEGAEA 157 (518)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC--------CEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHH
T ss_conf 986899999999739877678887454431013577--------557885687608999999999844899589866223
Q ss_pred EEEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 520001344-3012468980587089950672474157656543342106401444887887513653333222328884
Q gi|254781043|r 178 LDLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTG 256 (611)
Q Consensus 178 ~~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~ 256 (611)
++|++++ + .|+|+.+.+.. ++...|.|++|||||||+|++|.+||||..+||||++||+||||.+.||||+|||||+
T Consensus 158 ~~li~~~-~~~~~Gv~~~~~~-~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~ 235 (518)
T COG0029 158 LDLIIED-GIGVAGVLVLNRN-GELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTA 235 (518)
T ss_pred HHHHHCC-CCEEEEEEEECCC-CEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEECCCCCEEECCCE
T ss_conf 6660247-8347679996489-8179972684899248876312466798666641999999769823576444302642
Q ss_pred CCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 4220---1430456655780898326861255407651004752011156889988178888888746886111798999
Q gi|254781043|r 257 IYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVL 333 (611)
Q Consensus 257 ~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~l 333 (611)
++.+ .+|+||++|||||+|+|.+|||||++|+|. .||+|||||||+|+.|++++.. .||||+++++.+++
T Consensus 236 l~~~~~~~~LiSEAVRGEGA~L~~~~GeRFm~~~~p~-~ELAPRDVVARAI~~e~~~~g~------~V~LD~s~~~~~~~ 308 (518)
T COG0029 236 LYIPQRRAFLISEAVRGEGAILVNEDGERFMPDYHPR-GELAPRDVVARAIDAEMKRGGA------DVFLDISHIPGDFF 308 (518)
T ss_pred ECCCCCCCCEEEHHHHCCCCEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCC------EEEEECCCCCCHHH
T ss_conf 2479986530004340676478899878626688973-3335288999999999981598------49996667885045
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99853799999764367865440675203310012342157715853778885332276034021220335664304764
Q gi|254781043|r 334 QERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSN 413 (611)
Q Consensus 334 ~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggn 413 (611)
+++||.++..|+. .||||.++||||.|++||+||||.||.+|| |+||||||+|||||+|+||||||.||
T Consensus 309 ~~rFP~I~~~c~~-~GiD~~r~~IPV~PaaHY~mGGI~vD~~Gr----------Tsi~gLYAiGEvA~TGlHGANRLASN 377 (518)
T COG0029 309 ERRFPTIYAACLK-AGIDPTREPIPVVPAAHYTMGGIAVDANGR----------TSIPGLYAIGEVACTGLHGANRLASN 377 (518)
T ss_pred HHHCCHHHHHHHH-CCCCCCCCCCCCCCHHHEECCCEEECCCCC----------CCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 5658489999997-499955685675623624106677778886----------56766577321114566542133446
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf 32222223215677556654202656676400235788863101037887136899987887665097268758999999
Q gi|254781043|r 414 SLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDG 493 (611)
Q Consensus 414 sl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~a 493 (611)
||+||+|||+.|+++++......... ....+..+ . .....-+..-+++||++||+|+||+|++++|+.+
T Consensus 378 SLLE~vV~g~~aA~~i~~~~~~~~~~-~~~~~~~~--------~--~~~~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~ 446 (518)
T COG0029 378 SLLECLVFGKRAAEDIAGRLAPAPRE-APTLPVRD--------D--YEENVLLAHDRHELRRLMWRYVGIVRTAKGLERA 446 (518)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCC--------C--CCCCCCCCCCHHHHHHHHHHHCCEEECHHHHHHH
T ss_conf 58999999999999864135557667-77888655--------5--5620023458888899987632357646789999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEE
Q ss_conf 99999999998415157877545889999998888999999999999626255046235337788766688032135699
Q gi|254781043|r 494 CRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSL 573 (611)
Q Consensus 494 l~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~ 573 (611)
+..|+.++.+.... .. .+..+ .|++++|++|+++||.|+||||+|||.|||+. ++.|..+++
T Consensus 447 ~~~l~~~~~~~~~~-~~-------~~~~~----~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~------~~~~~~~~~ 508 (518)
T COG0029 447 IRRLEPLQQENDEY-AN-------FRVSN----RNLALVALLIARAALLRTESRGAHFRLDYPDT------LPEAQRRIL 508 (518)
T ss_pred HHHHHHHHHHHHHC-CC-------CCCCC----CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------CCCCCCCEE
T ss_conf 99987656554203-55-------44110----48999999999998734023565003668876------723367368
Q ss_pred EEE
Q ss_conf 998
Q gi|254781043|r 574 CWV 576 (611)
Q Consensus 574 ~~~ 576 (611)
.+.
T Consensus 509 ~~~ 511 (518)
T COG0029 509 VTL 511 (518)
T ss_pred EEC
T ss_conf 853
No 27
>KOG2403 consensus
Probab=100.00 E-value=0 Score=941.95 Aligned_cols=598 Identities=64% Similarity=1.077 Sum_probs=579.6
Q ss_pred CCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 05344133231058898996899999999998898299998689885210411653425137899999999999899845
Q gi|254781043|r 7 LKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGS 86 (611)
Q Consensus 7 ~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g 86 (611)
-.+.|.++++.||-+|||+|.||+++|+.++|.|.+|.++.|..+.+|++.+||||++|+++++.+|+|++|++||++++
T Consensus 45 ~~~~~~~~~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~s 124 (642)
T KOG2403 45 SDSIYAQVDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGS 124 (642)
T ss_pred CCCCEEEEEEECEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf 77520343000105899315333466666530673378873242566651364321244432677751455444400232
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88779999999999889999999986998132799855100146411456787656407986665426678999999873
Q gi|254781043|r 87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK 166 (611)
Q Consensus 87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~ 166 (611)
+|++||+.+++++.+++..+-+|+.+|+||++.++|+++++.|+|++..+..+....|+++++|+||+.+.+.|+.+.++
T Consensus 125 d~l~dqd~i~ym~~ea~~a~~el~~~g~~f~~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~ 204 (642)
T KOG2403 125 DWLGDQDAIHYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLR 204 (642)
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 34674324468774162347888734686565667757776541235676666666617886216660777666777740
Q ss_pred CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCC
Q ss_conf 12303113156520001344301246898058708995067247415765654334210640144488788751365333
Q gi|254781043|r 167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD 246 (611)
Q Consensus 167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~ 246 (611)
.+..++.+.++++||+.. |.|.|++++++.+|.++.++++++|+||||+|++|+++|++..+||||.+|++++|+.+.|
T Consensus 205 ~~~~~f~~yfa~dll~~~-g~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d 283 (642)
T KOG2403 205 HNTSFFVEYFALDLLMSQ-GECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSD 283 (642)
T ss_pred CCHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEEECCCEEECCCCCEEEEECCCCCCC
T ss_conf 104568999999988741-6810799999622642111340069998416627887324706736887477542578766
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 32223288844220143045665578089832686125540765100475201115688998817888888874688611
Q gi|254781043|r 247 MEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN 326 (611)
Q Consensus 247 mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~ 326 (611)
|||+|||||++++.|+||+|++|++||+++|..|||||+.|.|...+|++||++||+|..|+++|||+..+.+++||++.
T Consensus 284 ~efvqfhpt~i~g~Gcliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd~~~l~l~ 363 (642)
T KOG2403 284 MEFVQFHPTGIYGAGCLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKDHVYLQLS 363 (642)
T ss_pred CCEEEEEEECCCCCCEEEEECCCCCCCCEEECCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
T ss_conf 53034443224565626653043225501333653323001643011133455565555655742366788786531011
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 17989999985379999976436786544067520331001234215771585377888533227603402122033566
Q gi|254781043|r 327 HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHG 406 (611)
Q Consensus 327 ~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hG 406 (611)
|+|++.+++++|.+.+....+.|+|+.++||||.|++||.|||+.++++++|+........+.|||||||||+||.++||
T Consensus 364 h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEaac~svHG 443 (642)
T KOG2403 364 HLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEAACASVHG 443 (642)
T ss_pred CCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHH
T ss_conf 47724422257885320566741474456655577743544766567866316624666554553402016777776320
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 43047643222222321567755665420265667640023578886310103788713689998788766509726875
Q gi|254781043|r 407 ANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT 486 (611)
Q Consensus 407 anrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~ 486 (611)
|||||.|||++.+||||..+.+++.-.+.....++..++..++..+.+.+++..++.++..++|.+||+.||++++|+|.
T Consensus 444 ANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~~ld~lr~~~gsi~TselRl~MQksMqnhaaVFR~ 523 (642)
T KOG2403 444 ANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVANLDKLRFADGSIRTSELRLEMQKTMQKHAAVFRV 523 (642)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 21111345667887788877778885188899998788755005888986512567723799999999998633027882
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH
Q ss_conf 89999999999999999841515787754588999999888899999999999962625504623533778876668803
Q gi|254781043|r 487 QDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV 566 (611)
Q Consensus 487 ~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~ 566 (611)
++.|++++.+|.+|..++++++.-|++.+||++|++.+||+|++.||..++.+|++||||||+|.|+|||. |+|+
T Consensus 524 g~~LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy~~-----R~De 598 (642)
T KOG2403 524 GSVLQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDFPV-----RIDE 598 (642)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCC-----CHHH
T ss_conf 31888877789999867765310135623025689999988899989999888774210245201103641-----0001
Q ss_pred HHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 213569999846898059999447444256755000027721679
Q gi|254781043|r 567 NWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 567 nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
+|.|||+++++-.+|+.+++||||+...+.+ -+...+||..|+|
T Consensus 599 hWrKHTls~~~~~tg~Vtl~YRpVidkTLde-~~~~tvPPaiRsY 642 (642)
T KOG2403 599 HWRKHTLSYWDVGTGKVTLEYRPVIDKTLDE-AECDTVPPAIRSY 642 (642)
T ss_pred HHCCCEEEEECCCCCEEEEEEEECCCCCCCH-HHCCCCCCCCCCC
T ss_conf 2001234355278744788873010024754-3347679866779
No 28
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=918.00 Aligned_cols=526 Identities=24% Similarity=0.323 Sum_probs=456.9
Q ss_pred CEEEEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCH-HCCCCEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1332310588989968999999999988--982999986898852104-1165342513789999999999989984588
Q gi|254781043|r 12 TYVDHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTV-AAQGGIAASLANMTPDSWQWHLYDTIKGSDW 88 (611)
Q Consensus 12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~-~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~ 88 (611)
++-+.+|||||||||+|||+||++|+++ |++|+|++|..+.+|+++ ++++|+++++.. ..|+++.|++||+++|+|
T Consensus 4 ~~~~i~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~~sg~~~~~~~g~~~~~~~-~~~~~e~~~~dt~~ag~g 82 (554)
T PRK08275 4 NTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIP-GHATPEQYTKEITIANDG 82 (554)
T ss_pred CCEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCC
T ss_conf 6358872889999719999999999986898979999799989881799998888873468-999999999999985389
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 77999999999988999999998699813279985510014641145678765640798666542667899999987312
Q gi|254781043|r 89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN 168 (611)
Q Consensus 89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g 168 (611)
+|||++|+.++++++++|+||++||++|+|+++|.+.++.+. |. +.+.....+|+.+.+.|.+++++.+
T Consensus 83 l~d~~~v~~lv~~a~~~i~~L~~~Gv~f~r~~~G~~~~~~~~-~~----------~~~~~~~~~G~~i~~~l~~~~~~~~ 151 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVH-HM----------GSYVLPMPEGHDIKKVLYRQLKRAR 151 (554)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC-CC----------CCEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 877999999999899999999976998773899986001103-67----------7643216986999999999998659
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC------CCC-CCCCCEECCHHHHHHHHHC
Q ss_conf 303113156520001344301246898058708995067247415765654------334-2106401444887887513
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA------YFS-ATSAHTCTGDGAGMVARAG 241 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l------y~~-~t~~~~~tGdG~~mA~~aG 241 (611)
|++++++.+++||+++||+|+||+++|.++|+++.|+||+|||||||++++ |.+ +++.+.+||||++||+|||
T Consensus 152 i~i~~~~~~~~Ll~d~dGrv~Ga~~~d~~~g~~~~~~AkaVVLATGG~g~~~~~~~gy~~~t~~~p~~tGdG~amA~raG 231 (554)
T PRK08275 152 VLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAG 231 (554)
T ss_pred CEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 96998799999998589939999999447983999933827991576456666765423423379985118999999859
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 65333322232888442201430456655780898326861255407651004752011156889988178888888746
Q gi|254781043|r 242 LPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHI 321 (611)
Q Consensus 242 a~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v 321 (611)
|+|.||||+|||||.....+.+.++..++.|++|+|++|||||++|+|. +.++++|+.|+.+|+| +|
T Consensus 232 A~l~dmEfiQfhPt~~~~~g~~~~~~~~~~Ga~l~n~~Gerfm~~~~p~-------~~~a~ai~~e~~~g~g------~v 298 (554)
T PRK08275 232 AELANLECFQINPLIKDYNGPACAYVTGPLGGYTANAKGERFIECDYWS-------GQMMWEFYQELQSGNG------PV 298 (554)
T ss_pred CCCCCCCHHHCCCCCCCCCCCCEEEEECCCCEEEECCCCCEECCCCCCC-------HHHHHHHHHHHHCCCC------CE
T ss_conf 9835843310155424678861013532577089899997004145982-------8899999999964999------68
Q ss_pred EEEECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCCCEEEEECC-----CCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 8861117989999985--------3799999764367865440675203-----31001234215771585377888533
Q gi|254781043|r 322 HLYLNHLDPAVLQERL--------PGISESARIFAGVDVTRDPIPVIPT-----VHYNMGGIPTNYWGEVLDANSKNPER 388 (611)
Q Consensus 322 ~ld~~~~~~~~l~~~~--------~~~~~~~~~~~g~D~~~~~i~v~p~-----~hy~~GGi~vd~~g~v~~~~~~~~~t 388 (611)
|||++|++++.+++.. |... .+....|+||.++|||+.|. .||+||||+||.+++ |
T Consensus 299 ~ld~~~~~~e~~~~~~~~~~~~~~p~~~-~~~~~~g~D~~~~~i~v~~~~~~~~~~~~mgGI~vD~~~~----------T 367 (554)
T PRK08275 299 FLKLDHLAEETIQTIETILHTNERPSRG-RFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAE----------T 367 (554)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC----------E
T ss_conf 9777768999999876443332100799-9998749986668600114776466663575399889986----------5
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 22760340212203356643047643222222321567755665420265667640023578886310103788713689
Q gi|254781043|r 389 FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAA 468 (611)
Q Consensus 389 ~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 468 (611)
+||||||||||||+ ++|||++|+|||++||++|++|++.. ..+..+.+..+...+++..+...+.+.+|.+
T Consensus 368 ~I~GLyAaGE~a~~--------g~Nsl~~alV~G~~Ag~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (554)
T PRK08275 368 TVPGLYAAGDMASV--------PHNYMLGAFTYGWFAGENAAEYVAGR-DLPEVDAAQVEAERARVLAPLHREDGLPPAQ 438 (554)
T ss_pred ECCCCEEECHHHCC--------CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 03544550023335--------55412677887999999999997349-9899997888999999763651568999899
Q ss_pred HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99878876650972687589999999999999999841515787754588999999888899999999999962625504
Q gi|254781043|r 469 LREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG 548 (611)
Q Consensus 469 i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG 548 (611)
++.+||++||+|+|++|++.+|+.+|++|+.|+++++.+.+.+. ++|++++|++||+.+|+++++|||+|+||||
T Consensus 439 ~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~-----~el~~~~E~~n~l~~a~li~~aAL~R~ESRG 513 (554)
T PRK08275 439 VEYKLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLERIKARDP-----HELMRALEVRSIRDCAEMAARASLFRTESRW 513 (554)
T ss_pred HHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999984226324799999999999999999837578993-----8999999999999999999999971883779
Q ss_pred C--EECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 6--23533778876668803213569999846898059999447444
Q gi|254781043|r 549 S--HAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTE 593 (611)
Q Consensus 549 ~--H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~ 593 (611)
+ |||+|||+ |||+||+||++++++ ++|++++.|+||+++
T Consensus 514 ~~~H~R~DyPe-----~dd~~wl~~~~~~~~-~dG~~~~~~~p~~~~ 554 (554)
T PRK08275 514 GLYHHRVDFPE-----RNDAEWFCHTHLRKD-EDGRMVSFKRPVEPY 554 (554)
T ss_pred CCCCCCCCCCC-----CCCHHHCCEEEEEEC-CCCCEEEEEECCCCC
T ss_conf 98857788899-----987434885589998-999989998438889
No 29
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=100.00 E-value=0 Score=933.48 Aligned_cols=564 Identities=30% Similarity=0.438 Sum_probs=519.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8898996899999999998898299998689-88521041165342513-789999999999989984588779999999
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASL-ANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~-~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
|||||+|+||++||++++|+|.+|-..+-.+ +.|+||++||||||++. ...++||+-.||+||+|+|+|++++.-|+.
T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v~r 80 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNVKR 80 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHHHH
T ss_conf 96855653478999999864885125440588762000000266200256567888416653140323533677752789
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH---CC-CEEEC
Q ss_conf 999889999999986998132799855100146411456787656407986665426678999999873---12-30311
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK---NN-AEFFI 173 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~---~g-v~i~~ 173 (611)
||+.||+.|+.|.++||||.|+..|.+..|.|||.. +.||+|+...||++|+-++.+++.+ .| |+++.
T Consensus 81 la~~s~~iId~~~a~GvpFaRe~gGlLd~RsFGG~q--------vsRT~Yarg~TGQQLl~~~~~a~~r~~~~G~v~~y~ 152 (620)
T TIGR01811 81 LAEISPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ--------VSRTFYARGQTGQQLLLAADSALRRQIAAGTVEKYE 152 (620)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE--------EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 987308999998645884345546630013468600--------012134177627899999999998888627356641
Q ss_pred CCEEEEEEECCCC---CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 3156520001344---3012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 174 EYFALDLIINSEG---CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 174 ~~~~~~Li~d~dG---~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
+..++++|+.+++ +|.|+|+.|+.||++..|.|.|||||||||+.+|..|||+..+||..+..+|+.||-..|.+|+
T Consensus 153 ~~e~ld~iv~d~~gek~arGi~arnL~Tge~~~~~adAVilAtGGyg~vF~~sTna~~sna~A~~~~Y~~Ga~fAnp~Fi 232 (620)
T TIGR01811 153 RWEMLDIIVVDGDGEKRARGIIARNLVTGEIETFSADAVILATGGYGNVFYLSTNAMNSNASAAWRAYEQGAYFANPEFI 232 (620)
T ss_pred CCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCEE
T ss_conf 65168898875887502200121024000000003566898128860222212103442157999998679146367135
Q ss_pred CCCCCCCCCCE------EECCCCCCCCC-EEEEEC-------------------CCC--CCCCCCCCCCCCCCCCCEEHH
Q ss_conf 32888442201------43045665578-089832-------------------686--125540765100475201115
Q gi|254781043|r 251 QFHPTGIYGAG------CLITEGARGEG-GYLVNS-------------------KGE--RFMERYAPSAKDLASRDVVSR 302 (611)
Q Consensus 251 qfhPt~~~~~~------~l~~~~~rg~G-~~l~n~-------------------~Ge--rf~~~y~~~~~el~~rd~~s~ 302 (611)
|||||+|+..+ .||||++|++| .+|+.+ +++ +|+++.+|.+++|.||||.||
T Consensus 233 QiHPT~iP~~~~~QsKl~LMSESlRndGGRiW~pK~~~D~~~~~~~~lrp~~I~e~~rdYfLEr~YP~fGNLVPRDiAsR 312 (620)
T TIGR01811 233 QIHPTAIPVDGEFQSKLTLMSESLRNDGGRIWVPKEKNDDRDANQKKLRPEKIPEDKRDYFLERRYPAFGNLVPRDIASR 312 (620)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHH
T ss_conf 54672238888622257777465326986472468887431125422564458888885102200777778862247779
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 6889988178888888746886111----798999998537999997643678654406752033100123421577158
Q gi|254781043|r 303 CMMMEIREGRGVGKSKDHIHLYLNH----LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEV 378 (611)
Q Consensus 303 ai~~ei~~g~g~~~~~~~v~ld~~~----~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v 378 (611)
+|...|.+++++.++...||||++| |+.+.|..+|.++.++|+++.|.||++.||.|.|++||||||+|||++
T Consensus 313 ~i~~~c~~~~gvg~~~~~vYLDf~d~~~RlG~~~~~~kygnl~~~Y~~~~gddPy~~PM~I~PavHYtMGGLwvDYd--- 389 (620)
T TIGR01811 313 AIKEVCDAGKGVGPGENAVYLDFSDAIERLGRKEIDAKYGNLFEMYEKITGDDPYKVPMRIYPAVHYTMGGLWVDYD--- 389 (620)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEHHHCCHHCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCEEECCCEEEEHH---
T ss_conf 99998864037655443135014430021057889877242888999972687798985126852221685044120---
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCC------CHHHHHHH
Q ss_conf 5377888533227603402122033566430476432222223215677556654202656-6764------00235788
Q gi|254781043|r 379 LDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPI-PSLD------ISSCDRIM 451 (611)
Q Consensus 379 ~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~-~~~~------~~~~~~~~ 451 (611)
.+|+||||||+|||. -+.|||||||.|||+.+++-|..++-.+..+....... +..+ .....+..
T Consensus 390 -------~mT~~pGLFa~GEc~-fs~HGANRLGAnsLl~a~~dG~~~lP~ti~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 461 (620)
T TIGR01811 390 -------LMTTVPGLFAAGECD-FSDHGANRLGANSLLSALADGYFVLPATIENYLGLELSSEDLDEDAPEFEEALAEEQ 461 (620)
T ss_pred -------CCCCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf -------036887513530167-122453155699998863497576302577553024577767644408999999899
Q ss_pred HHHHCCCCCC----CC--CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHH
Q ss_conf 8631010378----87--1368999878876650972687589999999999999999841-515787754588999999
Q gi|254781043|r 452 DRFDRLRHAD----GH--VPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMAD-LKVHDRSLIWNSDLVETL 524 (611)
Q Consensus 452 ~~~~~~~~~~----g~--~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~-i~~~d~~~~~n~el~~~~ 524 (611)
+|+.+++..+ |. .+++.+|++|.++||++||+.|+.++|++++++|++|+++|.+ |.+++...++|+.+..+.
T Consensus 462 ~r~d~L~~~~pewvG~~v~~~~~~Hr~LG~~m~~~~gv~R~~~~L~~~~~kI~~L~~~f~~~i~i~gt~~e~Nq~l~~a~ 541 (620)
T TIGR01811 462 DRLDRLLKMDPEWVGDNVENADKFHRELGEIMWENCGVSRNNEKLLKALEKIEELREEFWKNIDIPGTTKESNQELEFAR 541 (620)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88888861583205654466678999987887661213661134788999999999998703756887101114678999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC-CCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 88889999999999996262550462353377887-66688032135699998468980599994474442567550000
Q gi|254781043|r 525 ELQNLMINAIATVYSAEARKESRGSHAREDFKDGE-FGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSK 603 (611)
Q Consensus 525 el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~-~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~ 603 (611)
+|.++|.||++|+..||.|+||||+|||+|||.+| ++.|||++|++-+.+..+++.++|.++++|| +++.
T Consensus 542 r~~d~l~La~l~~~dAl~R~EScGaHfr~e~~~~DgEA~R~Deef~~~~~w~f~G~~~~p~~~~e~l---------~~e~ 612 (620)
T TIGR01811 542 RVADYLELAELMCLDALNRNESCGAHFREEFQTPDGEAERNDEEFLYVAAWEFKGENDAPELHYEEL---------DFEL 612 (620)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCEEECCE---------EEEE
T ss_conf 9998986305310003367656788678666878742244730121110113378898840421553---------6876
Q ss_pred CCCCCCCC
Q ss_conf 27721679
Q gi|254781043|r 604 IAPKARVY 611 (611)
Q Consensus 604 ~~p~~R~Y 611 (611)
++|++|+|
T Consensus 613 v~p~~R~Y 620 (620)
T TIGR01811 613 VPPRKRDY 620 (620)
T ss_pred ECCCCCCC
T ss_conf 26766899
No 30
>PRK06854 adenylylsulfate reductase; Validated
Probab=100.00 E-value=0 Score=888.16 Aligned_cols=544 Identities=24% Similarity=0.271 Sum_probs=443.1
Q ss_pred CCCCEEEEEECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCC--CEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 344133231058898996899999999998--89829999868988521041165--34251378999999999998998
Q gi|254781043|r 9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQG--GIAASLANMTPDSWQWHLYDTIK 84 (611)
Q Consensus 9 ~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~G--Gi~a~~~~~~~Ds~~~~~~Dt~~ 84 (611)
...++.+++|||||||||+|||+|||+|+| +|++|+||+|..+.+|+| +||| |++++++. +||++.|++|+++
T Consensus 3 ~~~~~~~~~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~~Sg~-~A~G~~~i~a~~~~--~ds~e~~~~~~~~ 79 (610)
T PRK06854 3 MNPEVVEVDTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANIDRSGA-VAQGLSAINTYIGE--ENTPEDYVDYVRN 79 (610)
T ss_pred CCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH-HHHHHHHHHHCCCC--CCCHHHHHHHHHH
T ss_conf 99845788769999997699999999998778999799998999996438-99999999850789--9999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 45887799999999998899999999869981327998551001464114567876564079866654266789999998
Q gi|254781043|r 85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA 164 (611)
Q Consensus 85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~ 164 (611)
++.++|||++|+.+++++++.|++|++||++|+|+++|.+..+ + .|..+ .+|..+...|.+++
T Consensus 80 ~~~gl~d~~~v~~~~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~--g------------~~~~~---~~G~~~~~~l~~~~ 142 (610)
T PRK06854 80 DLMGIVREDLVYDLARHVDSSVHLFEEWGLPIWKDDEGKYVRR--G------------KWQIM---INGESYKPIVAEAA 142 (610)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE--C------------CCEEC---CCCHHHHHHHHHHH
T ss_conf 5157845999999999889999999977998650999988733--4------------86663---28899999999999
Q ss_pred HH-CCCEEECCCEEEEEEECCC--CCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCC---------CCEECCH
Q ss_conf 73-1230311315652000134--4301246898058708995067247415765654334210---------6401444
Q gi|254781043|r 165 LK-NNAEFFIEYFALDLIINSE--GCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATS---------AHTCTGD 232 (611)
Q Consensus 165 ~~-~gv~i~~~~~~~~Li~d~d--G~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~---------~~~~tGd 232 (611)
++ .+|++++++++++||++++ ++|+||+++|+++|+++.|+||+|||||||++++|+++|| |+.+|||
T Consensus 143 ~~~~~i~i~e~~~~~dLl~~~~~~~r~~Ga~~~d~~~g~~~~~~AkaVILATGG~g~ly~~~t~~~~~~~~~~p~~~TGD 222 (610)
T PRK06854 143 KKALADNIYNRVFIVDLLVDDNKPNRIAGAVGFSVRENKFYVFKAKAVIVATGGAVGIYRPRSPGEGRGRAWYPPWNSGS 222 (610)
T ss_pred HCCCCCEEECCEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf 65799889851687888660897775999999961689189997027998047751310678776567742368877664
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE--------EHHHH
Q ss_conf 8878875136533332223288844220143045665578089832686125540765100475201--------11568
Q gi|254781043|r 233 GAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDV--------VSRCM 304 (611)
Q Consensus 233 G~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~--------~s~ai 304 (611)
|++|||||||+|.||| +||||+.+...........+++|++++|.+|||||.+|+|......++++ +.+++
T Consensus 223 G~AmA~rAGA~l~dmE-~qF~p~~~~~~~~p~g~~~~~~~~~l~n~~Ge~fm~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 301 (610)
T PRK06854 223 GYAMGIRAGAEMTMME-NRFVPLRFKDGYGPVGAWFLLFKAKAVNAKGEEYETKYAAELKVGKPYGDAGPIPTCLRNHAT 301 (610)
T ss_pred HHHHHHHHCCCCCCCC-CEECCCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 9999998388755777-012144214774762032124431896689867220675022331344442345356789999
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH---HHHHHHHHHHCCCCCCCCEEEEECCCCCCCC------CCCCCCC
Q ss_conf 899881788888887468861117989999985---3799999764367865440675203310012------3421577
Q gi|254781043|r 305 MMEIREGRGVGKSKDHIHLYLNHLDPAVLQERL---PGISESARIFAGVDVTRDPIPVIPTVHYNMG------GIPTNYW 375 (611)
Q Consensus 305 ~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~~---~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~G------Gi~vd~~ 375 (611)
+.|+++|+|.......+++|++|++++.++.+| |.+...+.. .|+||.++||||.|++||+|| ||+||..
T Consensus 302 ~~e~~~G~g~v~ld~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~-~GiD~~~~~i~V~P~~hy~mGgh~~~gGi~v~~~ 380 (610)
T PRK06854 302 IEEMKAGRGPIYMDTEEALQDKHLESEAWEDFLDMTPGQALLWAE-QNIEPEKKNSEIMPTEPYIVGSHSGASGYWVSGP 380 (610)
T ss_pred HHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 999980799763676541565533178999856776789999987-6998655875342246601344534553387167
Q ss_pred CEEECC---CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCHHHHHHH
Q ss_conf 158537---78885332276034021220335664304764322222232156775566542026-56676400235788
Q gi|254781043|r 376 GEVLDA---NSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS-PIPSLDISSCDRIM 451 (611)
Q Consensus 376 g~v~~~---~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~ 451 (611)
+.+... .+.|.+|+||||||||||||+++| ||++|++.+ |++||.++++++.... ..+.......+...
T Consensus 381 ~~~~~d~~~~~~n~~T~I~GLyAaGE~ag~~~~---~~~sG~~~~----grlag~sa~e~~~~~~~~~~~~~~~~~~~~~ 453 (610)
T PRK06854 381 EDWVPDEYKWGYNRMTTVEGLFAAGDGVGGSPH---KFSSGSHAE----GRIAAKAAVKYILDHKDYKPEIDDDVIEELK 453 (610)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---CCCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 666753011466666656760563233334554---354442363----6999999999997375345566856788788
Q ss_pred HHHHC--------------CCCCCCCCCHHHHHHHHHHHHHCCCEEEE-----CHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 86310--------------10378871368999878876650972687-----589999999999999999841515787
Q gi|254781043|r 452 DRFDR--------------LRHADGHVPTAALREKMQRAMQLDAGVFR-----TQDSLSDGCRNLSCLWDEMADLKVHDR 512 (611)
Q Consensus 452 ~~~~~--------------~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R-----~~~~L~~al~~L~~l~~~~~~i~~~d~ 512 (611)
+++.+ +...++..+|.+++.+||++||+|+|++| ++++|+.++++|+.|+++++++.+.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~M~~y~g~vr~~~~r~~~~L~~al~~l~~l~~~~~~~~~~d- 532 (610)
T PRK06854 454 EEIYKPLENYLEFKDYSTDPDVNPNYISPKQLEERLQKIMDEYAGGISTNYTTNKKMLEIGLELLEMLKEDSEKLAAED- 532 (610)
T ss_pred HHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 7652303445441233344334645579999999999999973685046652279999999999999999996166788-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCEECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECC
Q ss_conf 75458899999988889999999999996262550--4623533778876668803213569999846898059999447
Q gi|254781043|r 513 SLIWNSDLVETLELQNLMINAIATVYSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV 590 (611)
Q Consensus 513 ~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESR--G~H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv 590 (611)
+++|++++|++|||++|+++++|||+|+||| |+|||+|||| |||+|||||+++.+++.+++++++++|+
T Consensus 533 ----~~el~~a~El~nml~vAe~i~~aAL~R~ESR~~G~HyR~DyPe-----rDD~nwl~~~~~~~~~~~~e~~~~~~~~ 603 (610)
T PRK06854 533 ----LHELLRAWELYHRLLTAEAHIRHILFRKETRWPGYYYRADYPG-----LDDENWHCFVNSKYDPGTGEWTLRKLPY 603 (610)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCEEEEEEECCCCEEEEEEECE
T ss_conf ----0888999999999999999999998540758888745888898-----7770207177899968997599996363
Q ss_pred C
Q ss_conf 4
Q gi|254781043|r 591 H 591 (611)
Q Consensus 591 ~ 591 (611)
+
T Consensus 604 ~ 604 (610)
T PRK06854 604 I 604 (610)
T ss_pred E
T ss_conf 8
No 31
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00 E-value=0 Score=886.67 Aligned_cols=456 Identities=34% Similarity=0.518 Sum_probs=399.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
+||||||||+|||+||++|+++|++|+|++|.+ .+|+|.+|||||++++. +.|||+.|++||+++|+|+|||++|+.
T Consensus 2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~-~~~~s~~A~gGi~~~~~--~~Ds~e~h~~Dt~~~G~gl~d~~lv~~ 78 (464)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGS-KDSNSYLAQAGIAFPLL--EGDSIRAHVLDTIRAGKYINDEEVVWN 78 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCHHHHHHHCCEECC--CCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 879998976999999999997499699995899-99514776112064028--999999999999995589888999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf 99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA 177 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~ 177 (611)
+|+++++.|+||++|||+|++++ .+|||+ ++|++++++.||..|++.|.+++++.+|+++. ..+
T Consensus 79 l~~~a~~~i~~L~~~Gv~f~~~~-------~~GGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~~v~~~~-~~~ 142 (464)
T PRK08401 79 VISKSTEAYDFLTSLGVEFTGNE-------LEGGHS--------FPRVFTIKNETGKHLIPILEKHARELGVNFIR-GFA 142 (464)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC-------CCCCCC--------CCEEEEECCCCHHHHHHHHHHHHHHCCCEEEH-HHH
T ss_conf 99999999999997699887788-------789743--------32026736765899999999999973985786-765
Q ss_pred EEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 52000134430124689805870899506724741576565433421064014448878875136533332223288844
Q gi|254781043|r 178 LDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257 (611)
Q Consensus 178 ~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~ 257 (611)
++|+++ ||+|.|+.. +|++ +++|+|||||||++++|+++|||+.+||||++||+++||.|.||||||||||++
T Consensus 143 ~~l~~~-dg~v~Gv~~----~ge~--i~~~aVIlATGG~g~l~~~tt~~~~~tGdg~~~a~~aGa~l~dmEfiQfhPtg~ 215 (464)
T PRK08401 143 EELAIK-NGKAYGVFL----NGEL--LKFDAVIIASGGFSGLYKFTAGSPLNLGTLIGDAALKGVPLRDLEFVQFHPTGF 215 (464)
T ss_pred HHHEEE-CCEEEEEEE----CCEE--EEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCCC
T ss_conf 757022-898999998----8889--885659989998653401357999985099999998598715817876468654
Q ss_pred CCC-EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 220-1430456655780898326861255407651004752011156889988178888888746886111798999998
Q gi|254781043|r 258 YGA-GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQER 336 (611)
Q Consensus 258 ~~~-~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~ 336 (611)
+++ .+|++|++||+|++|+|++|||||+ ||+|||+++++|+.|+.+|++ ||||++++ +.++++
T Consensus 216 ~~~~~~LisEa~rg~G~~L~n~~GerFm~-------ela~RDvvsrai~~e~~~g~g-------v~lD~~~i--~~~~~~ 279 (464)
T PRK08401 216 IGKRTYLISEAVRGAGAKLVTGDGERFVN-------ELETRDIVARAIYRKMLEGKG-------VFLDATGI--EDFKRR 279 (464)
T ss_pred CCCCCCEECHHHCCCCCEEECCCCCCHHC-------CCCCHHHHHHHHHHHHHHCCC-------EEECCCCH--HHHHHH
T ss_conf 58886354155415687874777478220-------378577899999999980897-------10257759--999987
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53799999764367865440675203310012342157715853778885332276034021220335664304764322
Q gi|254781043|r 337 LPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLI 416 (611)
Q Consensus 337 ~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~ 416 (611)
||.+++.++. .|+||.++||||.|++||+||||+||.+++ |+||||||||||||+|+|||||||||||+
T Consensus 280 ~p~~~~~~~~-~giD~~~~~i~V~P~~Hy~mGGI~iD~~~~----------T~I~GLyAaGE~a~gGvHGaNRLggNSLl 348 (464)
T PRK08401 280 FPYIYSFLRR-EGIDPSKDLIPVTPVAHYTIGGISVDIFYR----------TGIKGLYAIGEAASNGFHGANRLASNSLL 348 (464)
T ss_pred HHHHHHHHHH-CCCCCCCCEEEEECCCCEECCCEEECCCCC----------CCCCCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 4699999998-199966560440356687538988785667----------67786477557445777765311455689
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf 22223215677556654202656676400235788863101037887136899987887665097268758999999999
Q gi|254781043|r 417 DLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRN 496 (611)
Q Consensus 417 ~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~ 496 (611)
+|+|||++|+++++..... +... .. +...+. +.. .++||++||+|+||+|++++|++++++
T Consensus 349 e~~VfG~~aa~~~~~~~~~----~~~~--~~---------~~~~~~---~~~-~~~l~~~m~~~~gi~R~~~~L~~al~~ 409 (464)
T PRK08401 349 ECIVSGLEVARTISREKPK----REVK--EA---------PYHFYE---LGD-VDSLREILWNHAGIVRDEESLREGLKK 409 (464)
T ss_pred HHHHHHHHHHHHHHHCCCC----CCCC--CC---------CCCCCC---CCC-HHHHHHHHHHCCCEEECHHHHHHHHHH
T ss_conf 9999999999986440353----4345--56---------555333---457-999999998199999989999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEE
Q ss_conf 999999984151578775458899999988889999999999996262550462353377887666880321356999
Q gi|254781043|r 497 LSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLC 574 (611)
Q Consensus 497 L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~ 574 (611)
|+.|+.+ .++..+|++++.|||.|+||||+|||+|||+. || .|.++++.
T Consensus 410 l~~i~~~-----------------------~~l~l~a~~i~~aAl~R~ESRG~H~R~DyP~~-----~~-e~~~~~~~ 458 (464)
T PRK08401 410 LEGVEAD-----------------------PRLKLLARAVLECALAREESRGAHYREDFPFM-----RK-EFERPSFF 458 (464)
T ss_pred HHHHHHC-----------------------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CH-HHCCCCCC
T ss_conf 9986518-----------------------29999999999999736647766887478999-----74-33578735
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00 E-value=0 Score=875.25 Aligned_cols=546 Identities=23% Similarity=0.284 Sum_probs=464.3
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC-CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 33231058898996899999999998898299998689885210411-65342513789999999999989984588779
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA-QGGIAASLANMTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A-~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
..+.+|||||||+|.|||+|||+|+|++++|+|+||.++.|||+.++ .+|+|++.... ..+|+.|+.|+.|+++|+.|
T Consensus 9 ~~~~d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ikRSGaiAaGmdalNaav~pG-~~~PE~yv~~~tk~~DgIvd 87 (894)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAHVRHSGALAMGMDGVNNAVIPG-KAEPEDYVAEITRANDGIVN 87 (894)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCCCC
T ss_conf 65637787998897268899999760699589985456665205765345787513778-79888999999872366403
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99999999988999999998699813279985510014641145678765640798666542667899999987312303
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF 171 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i 171 (611)
|++++.+++++++.|+.||+||++|.|+++|+|.+|.+- +. .++.+.+..++.+++.|.+.|+++..+.+|+|
T Consensus 88 qd~v~~~a~~~~~vv~eLE~~Gl~F~KDenG~y~~Rrvh-~~------G~~~l~mp~Ge~iK~iL~r~L~~~~~r~~V~v 160 (894)
T PRK13800 88 QRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVH-RS------GSYVLPMPEGKDVKKALYRVLRQRSMRERIRI 160 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHEECC-CC------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 899999997768999999975984036898786010204-57------85112364433557999999998632006089
Q ss_pred ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCC-------CCCEECCHHHHHHHHHCCCC
Q ss_conf 11315652000134430124689805870899506724741576565433421-------06401444887887513653
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSAT-------SAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t-------~~~~~tGdG~~mA~~aGa~l 244 (611)
++++.+++||++ ||+|+||++|++++|++++|+||+|||||||+|++|.+++ +++.||||||+|+|++||+|
T Consensus 161 ~Nrv~~t~lLt~-dGrv~Ga~gf~irtGe~~virAKAVIlATGgaGrLglP~sGyl~~ty~nP~NtGdGyAMayrAGAeL 239 (894)
T PRK13800 161 ENRLMPVRVLTA-GGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYAMAYHAGAEL 239 (894)
T ss_pred EEEEEEEEEECC-CCEEEEEEEECCCCCEEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCC
T ss_conf 743457899713-8838888886035663899972779990365555677877740111338877662899999768875
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 33322232888442201430456655780898326861255407651004752011156889988178888888746886
Q gi|254781043|r 245 QDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLY 324 (611)
Q Consensus 245 ~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld 324 (611)
+||||.||||++....++++++..+++||+++|++|||||+. |++|++++.|+..+ ...+.++||||
T Consensus 240 t~~E~~Qi~p~~KD~nGP~c~~vA~g~Ggy~vNa~GERFme~-----------dy~Sgqm~~e~~rE--~~~GrGPvyLd 306 (894)
T PRK13800 240 SGIECFQINPLIKDYNGPACAYVANPFGGYQVNAQGERFVDS-----------DYWSGQMMAEVKRE--IESARGPIYLK 306 (894)
T ss_pred CCCEEEEEEEEEECCCCCCEEEECCCCCCEEECCCCCEEEEC-----------CCCHHHHHHHHHHH--HCCCCCCEEEE
T ss_conf 782478875211036576403203554506654888754455-----------76679999999987--60689867987
Q ss_pred ECCCCHHHHHHHHHHHH-------HHHHHHCCCCCCCCEEEEE-----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 11179899999853799-------9997643678654406752-----03310012342157715853778885332276
Q gi|254781043|r 325 LNHLDPAVLQERLPGIS-------ESARIFAGVDVTRDPIPVI-----PTVHYNMGGIPTNYWGEVLDANSKNPERFAPG 392 (611)
Q Consensus 325 ~~~~~~~~l~~~~~~~~-------~~~~~~~g~D~~~~~i~v~-----p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~G 392 (611)
++||++|++++..+-++ .+++...|.|+.+++||+. ++.+|+|+|+|||.+++ |+|||
T Consensus 307 l~HL~eE~i~~le~iL~~~erPsr~~f~~~rG~dy~~~~VEm~isei~ic~GHsaSGvwVd~~~~----------TtVpG 376 (894)
T PRK13800 307 VSHLPEETLTALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHAR----------TTVPG 376 (894)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCC----------CCCCC
T ss_conf 79999899999998775422750113200368887567741206877345555567547557863----------02565
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 03402122033566430476432222223215677556654202656676400235788863101037887136899987
Q gi|254781043|r 393 LMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREK 472 (611)
Q Consensus 393 LyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~ 472 (611)
|||||||||.+ +|||++++|||++||++|++|+.+......++.+...++.+++..++++..+.++.+++.+
T Consensus 377 LYAAGDvAcVp--------hNymlga~VfG~~AG~~Aaey~a~~~~~~~l~~d~~~~~~~ri~~pl~r~~G~~~~qVeyk 448 (894)
T PRK13800 377 LYAAGDLACVP--------HNYMIGAFVFGDLAGAHAASTLADVPAPGELPADQLAEAHELIYRPLRHPDGPPQPQVEYK 448 (894)
T ss_pred CCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCHHHHHHH
T ss_conf 41061002466--------5402555221487768999998468876679768999999985353217889984999999
Q ss_pred HHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--E
Q ss_conf 88766509726875899999999999999998415157877545889999998888999999999999626255046--2
Q gi|254781043|r 473 MQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS--H 550 (611)
Q Consensus 473 Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~--H 550 (611)
||+.|++|+.++|++.+|+++++++++|++++.++.+.+ ||||++++|+.++++|||++++|+|+|+||||+ |
T Consensus 449 lrr~vndyl~ppK~~~km~~al~~~~~~redi~~~~a~~-----~heLmralEv~~ilDcAEmaarasL~RtESRwglyH 523 (894)
T PRK13800 449 LRRFVNDYVAPPKTAAKLSLAVETFERMRAEIAGMGART-----PHELMRAAEVSFIRDCAEMAARSSLTRTESRWGLYH 523 (894)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999988535788617899999999999999998724788-----289999999989999999999998641020356552
Q ss_pred ECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCC
Q ss_conf 353377887666880321356999984689805999944744425675500002772167
Q gi|254781043|r 551 AREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARV 610 (611)
Q Consensus 551 ~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~ 610 (611)
||.|||| |||+||+||++.+ ++++|+|.+.++||.|+++..+ .++.++|..|.
T Consensus 524 ~R~DyPe-----RDD~nW~kH~~l~-k~~~g~m~~~~~~v~py~~p~~-~~~~~~~~~~~ 576 (894)
T PRK13800 524 DRADLPA-----RDDDQWGYHLNLR-KGDDGRMEFLKRPVAPYFVPVP-GLDDLPPVDRT 576 (894)
T ss_pred CCCCCCC-----CCCHHHHHHHHCC-CCCCCCEEEECCCCCCEEECCC-CCCCCCCCCCC
T ss_conf 2366887-----6626666654312-1788754650367776362253-46789998887
No 33
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00 E-value=0 Score=801.74 Aligned_cols=425 Identities=30% Similarity=0.491 Sum_probs=370.9
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|+-+|||||||||+|||+||++|+ +|++|+||+|.++.+|+|.+|||||+++.+ .|+++.|++||+++|++++|++
T Consensus 1 ~~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~~~~nS~~A~GGi~aa~~---~dd~~~~~~DtlkaG~~~~d~~ 76 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKLNECNTYLAQGGISVARN---KEDIPTFVEDTLKAGQYKNNLE 76 (433)
T ss_pred CCCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHCCCCEEECC---CCCHHHHHHHHHHHCCCCCCHH
T ss_conf 986487899995699999999617-899889997889999766876027247328---9987999999998657878899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf 9999999889999999986998132799855100146411456787656407986665426678999999873-123031
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFF 172 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~ 172 (611)
+|+.+|++++++|+||++|||+|+|+++|.. +..+|||+ .+|++|+.|.||..|++.|.+++.+ .+|+++
T Consensus 77 lv~~l~~~s~~ai~~L~~~Gv~f~r~~~g~~-~~r~GgHs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~i~ 147 (433)
T PRK06175 77 AVKILANESIENINKLIDMGLNFDKDEKELN-YTKEGAHS--------VNRIVHFKDYTGKKVEKILLKKVKKRKNITII 147 (433)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE-EECCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999889999999975986211688724-54146566--------78523358862999999999999717996799
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r 173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 (611)
Q Consensus 173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf 252 (611)
+++.+++||++ +++|+|++++ ++|+++.|+||+|||||||++++|..+||++.+||||++||+++||.|.|||||||
T Consensus 148 ~~~~~~~Li~~-~~~v~G~v~~--~~g~~~~i~AkaVILATGG~g~l~~~tTN~~~~tGdG~a~A~raGA~l~dme~iQ~ 224 (433)
T PRK06175 148 ENCELVDIIEN-DNTCIGGILL--KDNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRHNIKIKDLDYIQI 224 (433)
T ss_pred EEEEEEEEEEE-CCEEEEEEEE--ECCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEE
T ss_conf 73887887873-8989999999--57978999836699867986543247799988677899999981887379760678
Q ss_pred CCCCCCCC-----EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 88844220-----1430456655780898326861255407651004752011156889988178888888746886111
Q gi|254781043|r 253 HPTGIYGA-----GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNH 327 (611)
Q Consensus 253 hPt~~~~~-----~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~ 327 (611)
|||+++.+ .+|++|++||+|++|+|++|+|||+ ||+|||++|++|+.|++++++ ..||||++|
T Consensus 225 hPt~~~~~~~~~~~~Lise~~RG~Ga~L~n~~GeRF~~-------El~pRDvvs~ai~~e~~~~~~-----~~v~ld~~~ 292 (433)
T PRK06175 225 HPTAFYKKTIEGKKFLISESVRGEGGKLLNIKGERFVD-------ELLPRDVVTKAIYEEMKKTNS-----NYVYLDITF 292 (433)
T ss_pred EEEEECCCCCCCCCEEECHHHCCCCCEEECCCCCCHHC-------CCCCHHHHHHHHHHHHHHCCC-----CEEEEECCC
T ss_conf 86377378887743353233227863797799888110-------457535899999999972699-----758831123
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 79899999853799999764367865440675203310012342157715853778885332276034021220335664
Q gi|254781043|r 328 LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGA 407 (611)
Q Consensus 328 ~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGa 407 (611)
++.+.++++||.+++.+.. .|+||.++||||.|++||+||||+||.+++ |+|||||||||+||+|+|||
T Consensus 293 ~~~~~~~~~~p~i~~~~~~-~giD~~k~~i~v~P~~Hy~mGGi~id~~~~----------t~i~GLyAaGEva~~GvHGa 361 (433)
T PRK06175 293 KDKDFLKNRFPTIYNNCLK-RGIDITKDKIPVSPAQHYFMGGIKVDLNSK----------TSMKNLYAFGEVSCTGVHGA 361 (433)
T ss_pred CCHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCCCCCCCCEEECCCCC----------CCCCCEEEEECCCCCCCCCC
T ss_conf 7879999875899999998-299985886589745131066967999985----------34899788277656787740
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 30476432222223215677556654202656676400235788863101037887136899987887665
Q gi|254781043|r 408 NRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQ 478 (611)
Q Consensus 408 nrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~ 478 (611)
||||||||++|+||||+||+++++++..... ...+....+...+.+..+.+........+++.+||.-|.
T Consensus 362 NRLggnSLle~~VfGr~Ag~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
T PRK06175 362 NRLASNSLLEGLVFSKRGAEKINSEIDNIKL-NITKIYTLKHDVEYYSLLNKKIIIKELEKLRGDLKDELV 431 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1058889999999999999999999851667-742110147779999875376899999999999876641
No 34
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=100.00 E-value=0 Score=613.46 Aligned_cols=524 Identities=26% Similarity=0.333 Sum_probs=420.0
Q ss_pred CEEEECCCHHHHHHHHHHH----HCCCCEEEEECCCCCCCCCHHCCC--CEEEECCC-------CCCCCHHHHH-HHHHH
Q ss_conf 5889899689999999999----889829999868988521041165--34251378-------9999999999-98998
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMA----EKGFKTACITKVFPTRSHTVAAQG--GIAASLAN-------MTPDSWQWHL-YDTIK 84 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~----e~G~~V~lieK~~~~~g~s~~A~G--Gi~a~~~~-------~~~Ds~~~~~-~Dt~~ 84 (611)
||||||+|++||-||.+|. +.|+||+|+||+.+.||+++ ||| .||+.++. .+.|+..+++ -|+|
T Consensus 1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~eRSGAV-AQGLsAINtY~g~~Grs~~eN~~eDyVRyvr~DlM- 78 (651)
T TIGR02061 1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAVERSGAV-AQGLSAINTYLGLRGRSERENDAEDYVRYVRLDLM- 78 (651)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHCCHH-
T ss_conf 9478717855202789999874068837999611465422156-76678988651677665668882110321100012-
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEE---CCC-------------CCCCCCCCCCCCCEEEE
Q ss_conf 458877999999999988999999998699813279-9855100---146-------------41145678765640798
Q gi|254781043|r 85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE-AGKIYQR---PFG-------------GHMQNYGEGPPVQRTCA 147 (611)
Q Consensus 85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~-~G~~~~~---~~g-------------g~~~~~~~g~~~~R~~~ 147 (611)
||+++||+-.++.|.-++|+..|+||+|.-+++ +|.+.-. ... |+|+-..+|.+++
T Consensus 79 ---GlvREDL~fD~aRHVD~~VHlFE~WGLP~w~~p~dG~y~eGaaakvaGkslrkGdaPvReGrWQIMIhGESYK---- 151 (651)
T TIGR02061 79 ---GLVREDLVFDVARHVDDAVHLFEEWGLPLWKKPKDGKYLEGAAAKVAGKSLRKGDAPVREGRWQIMIHGESYK---- 151 (651)
T ss_pred ---HHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC----
T ss_conf ---3467888741201417510012216896331868887423114444201210378872377415875476660----
Q ss_pred ECCCCCHHHHHHHHHHHHHC-C-CE-EECCCEEEEEEECCC--CCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCC
Q ss_conf 66654266789999998731-2-30-311315652000134--4301246898058708995067247415765654334
Q gi|254781043|r 148 AADRTGHAILHTLYGQALKN-N-AE-FFIEYFALDLIINSE--GCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFS 222 (611)
Q Consensus 148 ~~d~tG~~i~~~L~~~~~~~-g-v~-i~~~~~~~~Li~d~d--G~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~ 222 (611)
....+.+++. | =+ |+++.++++||+|++ ++|.|||+||++++++++|+||+||+||||+.++|++
T Consensus 152 ----------pIvAEAAK~a~g~~~ni~eRifi~~LL~Dkn~PNriAGAVGFnvR~~~~hvFKaktvivAaGGA~n~yrP 221 (651)
T TIGR02061 152 ----------PIVAEAAKKAVGKDRNIFERIFIVKLLLDKNKPNRIAGAVGFNVREGEYHVFKAKTVIVAAGGASNVYRP 221 (651)
T ss_pred ----------HHHHHHHHHHCCCCCCCEEHEEEEEEECCCCCCCCEECCCEEEECCCCEEEEECCEEEEECCCCCCCCCC
T ss_conf ----------4899998752275444110102110002688887122011001017865698712456630661001357
Q ss_pred C---------CCCCEECCHHHHHHHHHCCCCCCCC--CCCCCCCCC---CCCEEECCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 2---------1064014448878875136533332--223288844---2201430456655780898326861255407
Q gi|254781043|r 223 A---------TSAHTCTGDGAGMVARAGLPLQDME--FVQFHPTGI---YGAGCLITEGARGEGGYLVNSKGERFMERYA 288 (611)
Q Consensus 223 ~---------t~~~~~tGdG~~mA~~aGa~l~~mE--f~qfhPt~~---~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~ 288 (611)
+ +||..+||++|.|.++|||.|+.|| ||-|.=++= ++..||+.. .+--|+.||.|..+..
T Consensus 222 RStGEgaGR~WYa~w~~GS~Y~m~~~aGA~mT~mEnRfvpaRFKDGYGPVGAwFL~fK------~ka~N~~GEeY~~~~~ 295 (651)
T TIGR02061 222 RSTGEGAGRVWYAVWDAGSAYTMLLKAGAKMTQMENRFVPARFKDGYGPVGAWFLFFK------AKAKNALGEEYIKTRR 295 (651)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH------HHCCCCCCCCHHHHCH
T ss_conf 6244367750036456635789999863324322034022033178887689998888------6305788612355130
Q ss_pred CCCCCCCCC-----------------CEEHHHHHHHHHHCCCCCCCCCEEEEEE----------------CCCCHHHHHH
Q ss_conf 651004752-----------------0111568899881788888887468861----------------1179899999
Q gi|254781043|r 289 PSAKDLASR-----------------DVVSRCMMMEIREGRGVGKSKDHIHLYL----------------NHLDPAVLQE 335 (611)
Q Consensus 289 ~~~~el~~r-----------------d~~s~ai~~ei~~g~g~~~~~~~v~ld~----------------~~~~~~~l~~ 335 (611)
+...+..++ -...-+++.||.+||| |+|++. .||.++.++.
T Consensus 296 a~L~~y~~~gya~p~~shrthrPIPTcLRNH~~~~E~~~Grg------PIyM~T~eAlq~~~~~l~~~~~Khlee~awed 369 (651)
T TIGR02061 296 AELKEYKDKGYAKPELSHRTHRPIPTCLRNHALLREVREGRG------PIYMDTKEALQDLAATLDKKKLKHLEEEAWED 369 (651)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC------CCEECHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 220355775345862024557888784144699999960879------81105388875253010335543367654454
Q ss_pred HHHHHHHHH--HHHCCCCCCCCEEEEECCCCCCCC------CCCC----------CCCCEEECCCCCCCCCCCCCEEECC
Q ss_conf 853799999--764367865440675203310012------3421----------5771585377888533227603402
Q gi|254781043|r 336 RLPGISESA--RIFAGVDVTRDPIPVIPTVHYNMG------GIPT----------NYWGEVLDANSKNPERFAPGLMAIG 397 (611)
Q Consensus 336 ~~~~~~~~~--~~~~g~D~~~~~i~v~p~~hy~~G------Gi~v----------d~~g~v~~~~~~~~~t~i~GLyAaG 397 (611)
.|....-++ +.-.++||..++-|++|+.+|.|| |+|| |+.-+.-+..-.|+||||.|||+||
T Consensus 370 FLdMtVgQA~LWActn~dP~e~~sE~~p~EPY~mGSHsg~cG~WvsGPdEd~~PeeY~~~~~nG~~YNRMTTVeGLF~~g 449 (651)
T TIGR02061 370 FLDMTVGQAVLWACTNVDPKERNSELAPAEPYVMGSHSGECGIWVSGPDEDLVPEEYAVRAANGKKYNRMTTVEGLFAIG 449 (651)
T ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHCC
T ss_conf 51012888888875078877787876666771005222467623427756778705764156886125421201465301
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHCCCC---------CCCCCC--
Q ss_conf 12203356643047643222222321567755665420-265667640023578886310103---------788713--
Q gi|254781043|r 398 EAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK-SSPIPSLDISSCDRIMDRFDRLRH---------ADGHVP-- 465 (611)
Q Consensus 398 e~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~-- 465 (611)
+|+.+.-| .++|.|.+| ||+|++.|.+|+.. +.+.+..+.+.+++.+..+++|.. .++.+|
T Consensus 450 D~vGa~pH---kFSSGSftE----GR~AaKaavr~ildG~k~~~~~~da~~Eelkk~~Y~Pme~f~~yk~~sTa~~VNPn 522 (651)
T TIGR02061 450 DAVGASPH---KFSSGSFTE----GRLAAKAAVRYILDGKKEGKEVSDAVVEELKKEVYKPMERFREYKDESTADSVNPN 522 (651)
T ss_pred CCCCCCCC---CCCCCCCHH----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 34688886---677664157----88999999777533678888543889999999851226788887652278887877
Q ss_pred ---HHHHHHHHHHHHHCCCEEEE-----CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---68999878876650972687-----5899999999999999998415157877545889999998888999999999
Q gi|254781043|r 466 ---TAALREKMQRAMQLDAGVFR-----TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATV 537 (611)
Q Consensus 466 ---~~~i~~~Lq~iM~~~~gi~R-----~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~ 537 (611)
|.+...+|||+|++|||.+- |+.-|+.+|++|.-|+|++..+.+.|- |||++|||+.|++.++++++
T Consensus 523 YI~P~qgl~RL~K~~DEY~gGv~t~Y~Tne~lL~~gl~lla~leEDleKLAArdl-----HELlRaWEl~HR~wT~ea~~ 597 (651)
T TIGR02061 523 YILPKQGLVRLQKLMDEYAGGVATIYKTNEKLLDIGLELLALLEEDLEKLAARDL-----HELLRAWELKHRLWTAEAHL 597 (651)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 4475345567654432106850465430388999999998776411778878778-----89998888765898888786
Q ss_pred HHHHCCCCCC--CCEECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECC
Q ss_conf 9996262550--4623533778876668803213569999846898059999447
Q gi|254781043|r 538 YSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV 590 (611)
Q Consensus 538 ~aal~R~ESR--G~H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv 590 (611)
+|.|+|+||| |..||.|||+ -||++|.|++++.+++++|+.++.|.|-
T Consensus 598 ~H~lFRkEtRwPGyYYR~D~~~-----ldDe~Wkcfv~Skydp~~gE~~~eK~Py 647 (651)
T TIGR02061 598 RHILFRKETRWPGYYYRADYLE-----LDDEEWKCFVVSKYDPETGEYTIEKAPY 647 (651)
T ss_pred HHHHCCCCCCCCCCCCCCCCCC-----CCCCCCEEEEEECCCCCCCCEEEEECCE
T ss_conf 4421022367888400056666-----6755646888622157778567740660
No 35
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=0 Score=602.52 Aligned_cols=395 Identities=30% Similarity=0.421 Sum_probs=315.6
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-----CCCCHHHHHHHHHHHCCCCC-C
Q ss_conf 05889899689999999999889829999868988521041165342513789-----99999999998998458877-9
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-----TPDSWQWHLYDTIKGSDWLG-D 91 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-----~~Ds~~~~~~Dt~~~g~~l~-d 91 (611)
--|||||||+|||+|||+|++.|++|+||||++..+|||..|++|||++.... ..||++.|++||+|+|.+.+ |
T Consensus 410 ~rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lGGNS~KASSGINgAgT~~Qk~~GI~DS~ElF~~DTlKSGkG~n~D 489 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGGHCD 489 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 86899897579999999999779957999578988874003315736689777897099888889999988733789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCC-------CCHHHHHHHHHHH
Q ss_conf 999999999889999999986998132799855100146411456787656407986665-------4266789999998
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADR-------TGHAILHTLYGQA 164 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~-------tG~~i~~~L~~~~ 164 (611)
|+|++.|+++|.++|+||.++|++|+. +..+|||+ ++|+|...++ .|..|+++|.+.+
T Consensus 490 PeLVr~La~~SadAIeWL~e~GVdLs~-------LsqLGGHS--------vkRTHR~~~~~~G~pvPiG~~Iv~~Le~~i 554 (1167)
T PTZ00306 490 PGLVKTLSVKSADAISWLSSLGVPLTV-------LSQLGGAS--------RKRCHRAPDKKDGTPVPIGFTIMRTLEDHI 554 (1167)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCHHH-------HCCCCCCC--------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 799999997348899999984998477-------02456878--------676467988778864676599999999999
Q ss_pred HH---CCCEEECCCEEEEEEECCCC--------CCEEEEEEE--ECCCEEEEECCCCEEEECCCCCCC---------C--
Q ss_conf 73---12303113156520001344--------301246898--058708995067247415765654---------3--
Q gi|254781043|r 165 LK---NNAEFFIEYFALDLIINSEG--------CCVGVVAWQ--LETGEIHRFSAKLVVLATGGYGRA---------Y-- 220 (611)
Q Consensus 165 ~~---~gv~i~~~~~~~~Li~d~dG--------~V~Gav~~~--~~~G~~~~i~AkaVILATGG~~~l---------y-- 220 (611)
++ .+|+++.++.+++|+.|.++ +|+||...+ -.+|..+.|.|++||||||||+.- |
T Consensus 555 k~kl~~~V~I~~~tkVt~LL~d~~g~~DG~~~~kVtGVey~~~~d~eG~~~tI~AkaVVLATGGFgaDke~~sLLkkYrP 634 (1167)
T PTZ00306 555 RTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAP 634 (1167)
T ss_pred HHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 86355672788557899987415767567653158889984235678854998347799968887766206678876396
Q ss_pred ----CCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------EEECCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf ----3421064014448878875136533332223288844220-------14304566557808983268612554076
Q gi|254781043|r 221 ----FSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGA-------GCLITEGARGEGGYLVNSKGERFMERYAP 289 (611)
Q Consensus 221 ----~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~-------~~l~~~~~rg~G~~l~n~~Gerf~~~y~~ 289 (611)
.+|||.+++||||+.||.++||.+.||++||.|||++..| .+|..|++||+||+|+|++|+||++
T Consensus 635 dL~~fpTTNgpgATGDGIkMA~~IGA~LVDMd~IQVHPTGfVDPkdp~~~tkfLaaEALRG~GGILVNk~GkRFVN---- 710 (1167)
T PTZ00306 635 QLSGFPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVN---- 710 (1167)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCEEEEEHHHCCEEEEECCCCCCCCC----
T ss_conf 4368888899997626899999859817367625534751357878665541342014316504998689981112----
Q ss_pred CCCCCCCCCEEHHHHHHHHHH--CCCCCCCCCEEEEEEC-----------------------------------CCCHHH
Q ss_conf 510047520111568899881--7888888874688611-----------------------------------179899
Q gi|254781043|r 290 SAKDLASRDVVSRCMMMEIRE--GRGVGKSKDHIHLYLN-----------------------------------HLDPAV 332 (611)
Q Consensus 290 ~~~el~~rd~~s~ai~~ei~~--g~g~~~~~~~v~ld~~-----------------------------------~~~~~~ 332 (611)
||.+||+||.+|..+-.+ +.+- ....|+-+. .++++.
T Consensus 711 ---EL~TRDvVS~AIlaQ~~~yp~~gg---~k~AylVlne~~ak~~~~~~~~fY~kk~GLmkk~dTiEELAk~igv~~e~ 784 (1167)
T PTZ00306 711 ---ELDLRSVVSQAIIAQGNEYPGSGG---SKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVEN 784 (1167)
T ss_pred ---CCCCHHHHHHHHHHCCCCCCCCCC---CEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCHHH
T ss_conf ---344178999999845455777777---60389996768887642100334410245389828899999886969999
Q ss_pred HHHHHHHHHHHHHHHCCCCC-----------CCCE---EEEECCCCCCCCCCCCCCCCEEECCCCCC----CCCCCCCEE
Q ss_conf 99985379999976436786-----------5440---67520331001234215771585377888----533227603
Q gi|254781043|r 333 LQERLPGISESARIFAGVDV-----------TRDP---IPVIPTVHYNMGGIPTNYWGEVLDANSKN----PERFAPGLM 394 (611)
Q Consensus 333 l~~~~~~~~~~~~~~~g~D~-----------~~~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~----~~t~i~GLy 394 (611)
|++.+..+.+........+. .+.| ++|.|.+|||||||.||.++||++.++.. ...+|+|||
T Consensus 785 L~~Tle~YN~~v~~kkDdpF~gK~~fp~~l~~kgPfYai~VTPvVHhTMGGlkINtkAqVL~~dg~vnV~~~gKPI~GLY 864 (1167)
T PTZ00306 785 LHRTLETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLF 864 (1167)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEECCCCEEEECCCCCCCCCCCCCCCCEE
T ss_conf 99999999999862898732475457875678898799998235612689836888854884478512356687427657
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 40212203356643047643222222321567755665420265
Q gi|254781043|r 395 AIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP 438 (611)
Q Consensus 395 AaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~ 438 (611)
||||+ ++|+||+||||||||+||+|||||||++||...++...
T Consensus 865 AAGEV-TGGVHG~NRLGGNSLlECVVFGRIAGd~AA~i~~~~~~ 907 (1167)
T PTZ00306 865 GAGEV-TGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKKY 907 (1167)
T ss_pred ECCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86421-47656676660577878886148776989998752535
No 36
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=100.00 E-value=0 Score=609.61 Aligned_cols=383 Identities=36% Similarity=0.530 Sum_probs=317.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCHHCCCCEEEECCCCC-----CC-CHHHHHHHHHHHCCCCCC
Q ss_conf 5889899689999999999889-8299998689885210411653425137899-----99-999999989984588779
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTRSHTVAAQGGIAASLANMT-----PD-SWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-----~D-s~~~~~~Dt~~~g~~l~d 91 (611)
||||||||.|||+||++|.++| .+|+||||+++.+|||..+.|+||++....+ +| |+|++++||||+|.+.+|
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~ 80 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND 80 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 96898427688999999986468763787057523226899772102356848885488899677889988863278887
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECC--CCCHHHHHHHHHHHHHCC-
Q ss_conf 99999999988999999998699813279985510014641145678765640798666--542667899999987312-
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAAD--RTGHAILHTLYGQALKNN- 168 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d--~tG~~i~~~L~~~~~~~g- 168 (611)
|+|++.|+++|.+.++||++.++.|.-+. +..+|||+ .+|+|-..+ .+|.+|+..|.+.+++.|
T Consensus 81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~-----~~~~GGhs--------~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gs 147 (487)
T TIGR01813 81 PELVRTLAEESADAVDWLQDCGVGFRLDD-----LIQLGGHS--------VKRAHRPTGGAASGAEIVQKLSKKAKKEGS 147 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCH-----HHHCCCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 89999999878899887764221000111-----44327876--------464303478876784011777887743377
Q ss_pred -----CEEECCCEEEEEEECCCCCCEEEEEEE-------ECCCEEEEECCCCEEEECCCCC-CC------C-------CC
Q ss_conf -----303113156520001344301246898-------0587089950672474157656-54------3-------34
Q gi|254781043|r 169 -----AEFFIEYFALDLIINSEGCCVGVVAWQ-------LETGEIHRFSAKLVVLATGGYG-RA------Y-------FS 222 (611)
Q Consensus 169 -----v~i~~~~~~~~Li~d~dG~V~Gav~~~-------~~~G~~~~i~AkaVILATGG~~-~l------y-------~~ 222 (611)
|++..++.+++||.|++|+|+|+++.. -..+.++.+.+|+||||||||+ .- | ..
T Consensus 148 kDsnlv~~~~n~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~~~~y~P~L~~~~~ 227 (487)
T TIGR01813 148 KDSNLVETRLNSKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKELIKKYDPELKGKLD 227 (487)
T ss_pred CCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHHHCHHHCCCCC
T ss_conf 43211221006727999986971189999621225887777873267550606897576133338999861801167023
Q ss_pred CCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------EEECCCCCCCCC---EEEEE-CCCCCCCCCCCCCC
Q ss_conf 21064014448878875136533332223288844220-------143045665578---08983-26861255407651
Q gi|254781043|r 223 ATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGA-------GCLITEGARGEG---GYLVN-SKGERFMERYAPSA 291 (611)
Q Consensus 223 ~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~-------~~l~~~~~rg~G---~~l~n-~~Gerf~~~y~~~~ 291 (611)
|||.++.||||+.||..+||.++||.|||.|||+.+.+ ++++++++|+.| |+++| .+|+|||+
T Consensus 228 sTN~~GaTGDg~~~a~~~GA~~vdm~~iQ~~Pt~~~d~gDrennW~~~~~~~~r~~GF~~aI~~n~~~G~RF~n------ 301 (487)
T TIGR01813 228 STNQPGATGDGIKMAEKIGAALVDMDFIQAHPTASPDEGDRENNWGFLISEAVRGYGFAKAILINPKTGERFVN------ 301 (487)
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEECCEEECCCEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC------
T ss_conf 46899635799999998088745040474261442698751024465665667522552217732678850003------
Q ss_pred CCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC---------CCC-----------------HHHHHHH--H------
Q ss_conf 00475201115688998817888888874688611---------179-----------------8999998--5------
Q gi|254781043|r 292 KDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN---------HLD-----------------PAVLQER--L------ 337 (611)
Q Consensus 292 ~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~---------~~~-----------------~~~l~~~--~------ 337 (611)
||++||.+|.+|........|.|.....+.+|-. ... -|.|.+. +
T Consensus 302 -El~~Rd~~s~aI~a~~~k~~gkPDn~A~l~~~~~~~~~a~~~~~~~Gelkeft~~g~~~K~ds~e~LAK~yD~~~~~~~ 380 (487)
T TIGR01813 302 -ELATRDTVSDAILAQPGKSEGKPDNRAYLVFDEDVAKKAEEVENYLGELKEFTKDGVAYKGDSLEELAKQYDFNIPAAA 380 (487)
T ss_pred -CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCHHH
T ss_conf -4672568999998388878878885506880857876667777765467666314855430248999986167989899
Q ss_pred -----HHHHHHHHHHC-CCCC------------C-CCE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CEE
Q ss_conf -----37999997643-6786------------5-440---67520331001234215771585377888533227-603
Q gi|254781043|r 338 -----PGISESARIFA-GVDV------------T-RDP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAP-GLM 394 (611)
Q Consensus 338 -----~~~~~~~~~~~-g~D~------------~-~~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~-GLy 394 (611)
..+++... . |.|+ . +-| ++|.|.+|||||||.||+.+||++.+.. ++|| |||
T Consensus 381 L~~~v~~yN~~v~--~Dg~D~~F~r~~d~~~d~~l~~PyY~~~~~P~vHhTMGGv~IntkaeVl~~~~~---~pI~nGLf 455 (487)
T TIGR01813 381 LKKTVKDYNEYVA--KDGKDTAFGRRNDMKDDLSLKAPYYAIKVTPKVHHTMGGVKINTKAEVLDENGE---KPIKNGLF 455 (487)
T ss_pred HHHHHHHHHHHHH--CCCCCHHHCCCCCCHHHCEECCCEEEEEEECCEEEECCCEEECCCCHHHHHCCC---CCCCCCCE
T ss_conf 9999988731320--478871234678873220205888999963771575486367874055353589---66877646
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 402122033566430476432222223215677
Q gi|254781043|r 395 AIGEAGCASVHGANRLGSNSLIDLVVFGRAAVI 427 (611)
Q Consensus 395 AaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~ 427 (611)
||||+ ++|+||+|||||||++||+||||+||+
T Consensus 456 AAGEV-TGGvHG~nRLGGna~~d~~vFGr~Ag~ 487 (487)
T TIGR01813 456 AAGEV-TGGVHGANRLGGNAIADCIVFGRIAGE 487 (487)
T ss_pred EEEEE-ECCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 76773-067136621223467668761400269
No 37
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=0 Score=539.41 Aligned_cols=399 Identities=28% Similarity=0.433 Sum_probs=314.6
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHCCC
Q ss_conf 3231058898996899999999998898299998689885210411653425137-----89999999999989984588
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIKGSDW 88 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~~g~~ 88 (611)
++.+|||||||+|.|||+||++|+|+|++|+||||.+..+|+|.+++|++++... ....|+++.+++|+++.+.+
T Consensus 57 ~~~~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~~s~g~~~~~~t~~q~~~G~~ds~~~~~~d~~~~~~~ 136 (506)
T PRK06481 57 LKDKYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 136 (506)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 26984679989889999999999988997899968999995188855884526999999738999999999999973488
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCC--CCHHHHHHHHHHHHH
Q ss_conf 779999999999889999999986998132799855100146411456787656407986665--426678999999873
Q gi|254781043|r 89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADR--TGHAILHTLYGQALK 166 (611)
Q Consensus 89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~--tG~~i~~~L~~~~~~ 166 (611)
.+|+++++.|+++++++|+||+++|++|.+.. ..+ +.+.+|.+...+. .|..++..|.+.+.+
T Consensus 137 ~~d~~l~~~~~~~s~~~idWl~~~G~~~~~~~-------~~g--------~~~~~~~~~~~~g~~~g~~lv~~l~~~~~~ 201 (506)
T PRK06481 137 TNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-------ITG--------GMSEKRTHRPHDGSAVGGYLVDGLLKNVQE 201 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCC--------CCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 88899999999838999999997598466676-------678--------877670343488764799999999999987
Q ss_pred CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC------CCC------CCCCCCEECCHHH
Q ss_conf 1230311315652000134430124689805870899506724741576565------433------4210640144488
Q gi|254781043|r 167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR------AYF------SATSAHTCTGDGA 234 (611)
Q Consensus 167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~------ly~------~~t~~~~~tGdG~ 234 (611)
.||+++.++.+++|+ ++||+|+||++. ..+++.+.|.||+||||||||+. -|. .++++.++||||+
T Consensus 202 ~gv~i~~~t~~~~L~-~~dG~V~GV~~~-~~~g~~~~i~akaVILATGGf~~N~em~~~~~p~~~~~~~~~~~g~tGDGi 279 (506)
T PRK06481 202 RKIPLFVNADVTKIT-EKDGKVTGVKVK-INGKETKTISSKAVVVTTGGFGANKKMIAKYRPDLKGYVTTNQEGSTGDGI 279 (506)
T ss_pred CCCEEEECCEEEEEE-ECCCCEEEEEEE-ECCCEEEEEECCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 798799877832323-058937899999-689849999735699977887767999997395434763069998753899
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC-----CCCCC---CEE------
Q ss_conf 7887513653333222328884422014304566557808983268612554076510-----04752---011------
Q gi|254781043|r 235 GMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAK-----DLASR---DVV------ 300 (611)
Q Consensus 235 ~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~-----el~~r---d~~------ 300 (611)
.||+++||.+.||+++|+||+....+++++++.++++++++||.+|+||++++.+... ..-|. .++
T Consensus 280 ~ma~~aGa~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~i~Vn~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~ifd~~~~ 359 (506)
T PRK06481 280 KMIEKLGGTTVDMDQIQIHPTVQQSKSYLIGEAVRGEGAILVNQKGKRFGNELDTRDKVSAAINKLPEKSAYVIFDEGVK 359 (506)
T ss_pred HHHHHCCCEEECCCCEEECCCCCCCCCCCCCHHHCCCCEEEECCCCCCCHHCCCCHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf 99998699484576404325544787530037554886068899988800000628689999985435661587062577
Q ss_pred --HHHHHHHHHHCCCCCCCCCEE--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCC----------CCCE---EEEECCC
Q ss_conf --156889988178888888746--8861117989999985379999976436786----------5440---6752033
Q gi|254781043|r 301 --SRCMMMEIREGRGVGKSKDHI--HLYLNHLDPAVLQERLPGISESARIFAGVDV----------TRDP---IPVIPTV 363 (611)
Q Consensus 301 --s~ai~~ei~~g~g~~~~~~~v--~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~----------~~~~---i~v~p~~ 363 (611)
.+++..-+..|... ..+.+ ..+.-.+|++.|++.+..+++.|....+.|+ .+.| +++.|..
T Consensus 360 ~~~~~~~~~~~~g~~~--~adTleeLA~~~gi~~~~L~~tv~~yN~~~~~g~D~dfgr~~~~~~~i~~gPfYav~~~p~~ 437 (506)
T PRK06481 360 DRVKAIAQYEEKGFVE--EGKTIDELAKKINVPAETLTKTIDTWNKAVKNKKDEAFGRTTGMDNDLSTGPYYAIKIAPGI 437 (506)
T ss_pred HHHHHHHHHHHCCCCC--CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEEEEEEEHHH
T ss_conf 7778899998628754--47979999987198989999888888888740772543533246687767980789987344
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 1001234215771585377888533227603402122033566430476432222223215677556654202
Q gi|254781043|r 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436 (611)
Q Consensus 364 hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~ 436 (611)
|+||||++||.++||++.++ ++|||||||||++ +|+||.||+|||+++.|+||||+||++||+|++.+
T Consensus 438 ~~T~GGl~id~~~qVld~dg----~~IpGLYAaGe~a-gg~~g~~~~gG~~l~~a~vfGr~AG~~AA~~~k~~ 505 (506)
T PRK06481 438 HYTMGGVKINTNTEVLKKDG----SPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFVKAQ 505 (506)
T ss_pred CEECCCEEECCCCCEECCCC----CEECCEEECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 47876917993737668996----9939977754556-17877861589999999999999999999999734
No 38
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=100.00 E-value=0 Score=513.77 Aligned_cols=381 Identities=44% Similarity=0.612 Sum_probs=315.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC---CCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 588989968999999999988982999986898852104116534251378---99999999999899845887799999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN---MTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~---~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
||||||+|+|||+||++|+|+|++|+||||.+..+|+|.+++|+++..... ...|+++.+++|+++.+.+.+|++++
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~s~G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~ 80 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGLDELADHPYV 80 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 98999886999999999997899489997899999768884523100488435157999999999999965887889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9999988999999998699813279-985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNE-AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~-~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
+.|+++++++++||++||++|.+.. ++.+...+++++...................+|..++..|.+++++.||+++.+
T Consensus 81 ~~~~~~s~~~~dwl~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~ 160 (401)
T pfam00890 81 EAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSATWRTPHDVADRRRGTLGTGHALLARLLEGALKRGIDFQPR 160 (401)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99998679999999983997775677871113356666665021035454455678889999999999999769989938
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCC-CEEEECCCCCCC---------CCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf 156520001344301246898058708995067-247415765654---------3342106401444887887513653
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAK-LVVLATGGYGRA---------YFSATSAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~Ak-aVILATGG~~~l---------y~~~t~~~~~tGdG~~mA~~aGa~l 244 (611)
+++++||+| +|+|+||++.+..+|+.+.|+|+ +||||||||++. +..+++++.+||||+.||+++||.+
T Consensus 161 t~~~~Li~d-~g~V~Gv~~~~~~~g~~~~i~A~kaVIlAtGGf~~n~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGa~l 239 (401)
T pfam00890 161 HPADDLIVE-DGRVTGVVVENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALRAGAAL 239 (401)
T ss_pred CEEEEEEEE-CCEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 696156982-8858999999678980999995106799668813448876410667653378984866999999839074
Q ss_pred CC--CCCCCCCCCCCCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 33--32223288844220---14304566557808983268612554076510047520111568899881788888887
Q gi|254781043|r 245 QD--MEFVQFHPTGIYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKD 319 (611)
Q Consensus 245 ~~--mEf~qfhPt~~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~ 319 (611)
.+ |+++|+||..+.+. ..++...+.+.|++++|.+|+||+++. .+++++++++.....+.. ...
T Consensus 240 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~i~vn~~G~Rf~~e~-------~~~~~~~~~~~~~~~~~~----~~~ 308 (401)
T pfam00890 240 TDDLMEFVQFHPTSLPGIRLGSGLLIEALRGEGGILVNDDGRRFMNEL-------ASRDVVSRAITRNEIDEG----RGA 308 (401)
T ss_pred CCCCCHHEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEHHCC-------CCHHHHHHHHHHHHHHCC----CCC
T ss_conf 588722216646313687887630344035797899889998702203-------527299999999998536----788
Q ss_pred EEEEEECC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCC
Q ss_conf 46886111-79899999853799999764367865440675203310012342157715853778885332276034021
Q gi|254781043|r 320 HIHLYLNH-LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGE 398 (611)
Q Consensus 320 ~v~ld~~~-~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe 398 (611)
..|++.++ ++++.|++.+..+++.|....+.||.++|+++.|..|||+|||+||.++||++.++ ++|||||||||
T Consensus 309 ~~~l~~~~~~~~~~l~~tv~~yn~~~~~g~d~d~~~~~~~~~~~~~~T~GGl~id~~~qVld~~g----~~IpGLYAaGe 384 (401)
T pfam00890 309 HVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDPYDRPIPVFPAQHYTMGGVRTDENGRVLDADG----QPIPGLYAAGE 384 (401)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCEECCCEEECCCCEEECCCC----CEECCEEEECC
T ss_conf 68999489999899999999999999966898856670367654182045817981763878999----89189887116
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 22033566430476432
Q gi|254781043|r 399 AGCASVHGANRLGSNSL 415 (611)
Q Consensus 399 ~a~~g~hGanrlggnsl 415 (611)
|+|+|+||+||||||+|
T Consensus 385 ~a~gg~hG~~rl~g~~l 401 (401)
T pfam00890 385 VACGGVHGANRLGGNSL 401 (401)
T ss_pred CCCCCCCCCCCCHHHCC
T ss_conf 76568887675631089
No 39
>PRK07121 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=506.76 Aligned_cols=404 Identities=25% Similarity=0.259 Sum_probs=286.3
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEEC------CCCCCCCHHHHHHHHHHHC
Q ss_conf 3323105889899689999999999889829999868988521041165342513------7899999999999899845
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL------ANMTPDSWQWHLYDTIKGS 86 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~------~~~~~Ds~~~~~~Dt~~~g 86 (611)
--|+||||||||+|+|||+||++|+++|++|+||||.+..+|+|.+++|++++.. ....+||++.+++|+++.+
T Consensus 16 ~wd~e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~sgG~~~~~~~t~~q~~~g~~Ds~e~~~~~~~~~~ 95 (491)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAV 95 (491)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 66687698998967999999999998899289995489999508883777260799999997389999999999999970
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC-------CCCCCCC---CCCCCCCCEEE---EECCC-C
Q ss_conf 887799999999998899999999869981327998551001-------4641145---67876564079---86665-4
Q gi|254781043|r 87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRP-------FGGHMQN---YGEGPPVQRTC---AAADR-T 152 (611)
Q Consensus 87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~-------~gg~~~~---~~~g~~~~R~~---~~~d~-t 152 (611)
.+.+|+++++.|+++++++++||+++|++|++...+.....+ |.|.... .....+.+|.+ +.++. .
T Consensus 96 ~~~~d~~l~~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~pr~h~~~~~g~~~~ 175 (491)
T PRK07121 96 GDGVDEEKIRRYCEGSVEHFDWLEGLGVPFERSYFPEKTSYPPNDEGLYYSGNEKVWPFAEHAKPAPRGHRVQGPGDTGG 175 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 89999999999997229999999974997455657765535677754202585223321013576676653214787764
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------C-----
Q ss_conf 266789999998731230311315652000134430124689805870899506-7247415765654------3-----
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------Y----- 220 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y----- 220 (611)
|..++..|.+.+++.||+++.++.+++||+|++|+|+||++. .+++...|+| |+||||||||+.- |
T Consensus 176 g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~d~~G~V~Gv~~~--~~~~~~~i~A~k~VILAtGGf~~n~~m~~~~~p~~~ 253 (491)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYETRATRLIVDGDGRVVGVRAR--RFGETGAIRARKGVVLAAGGFAMNRDMVARYAPRYA 253 (491)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEE--ECCCEEEEEECCCEEECCCCCCCCHHHHHHHCCCCC
T ss_conf 999999999999857987996779999999799988999999--789169998147279846996876999997582334
Q ss_pred -CCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCC--
Q ss_conf -3421064014448878875136533332223288844220143045665578089832686125540765--10047--
Q gi|254781043|r 221 -FSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPS--AKDLA-- 295 (611)
Q Consensus 221 -~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~--~~el~-- 295 (611)
..+++++++||||+.||+++||.|.+|+++|.++. +.++..+ .++++||.+|+||++|.... .....
T Consensus 254 ~~~~~~~~~~tGdGi~ma~~aGA~l~~m~~~~~~~~-~~~~~~~-------~~gi~Vn~~G~RF~nE~~~~~~~~~~~~~ 325 (491)
T PRK07121 254 GGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRF-IYPPSAL-------LRGILVNKRGQRFVAEDSYGARIGHFILE 325 (491)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCC-------CCCEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 786678999973799999982997027866000256-5783003-------66269999998667676626789999984
Q ss_pred CCCEEH-----HHHHHHHHHCCCCC---CCCCEEEEE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCC--CCC---
Q ss_conf 520111-----56889988178888---888746886-1------117989999985379999976436786--544---
Q gi|254781043|r 296 SRDVVS-----RCMMMEIREGRGVG---KSKDHIHLY-L------NHLDPAVLQERLPGISESARIFAGVDV--TRD--- 355 (611)
Q Consensus 296 ~rd~~s-----~ai~~ei~~g~g~~---~~~~~v~ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~--~~~--- 355 (611)
..+..+ .....+........ .....+.-| + -.++++.|++.+..+++.+.. |.|+ .|.
T Consensus 326 ~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~--G~D~~fgk~~~~ 403 (491)
T PRK07121 326 QPGGTAYLIVDAALFREARAQLRPQIDGFTPGARKAETIEELARELGIPPGALAATVDAYNRAAAR--GEDPLFHKQPEW 403 (491)
T ss_pred CCCCEEEEEECHHHHHHHHHHCCHHHHHHCCCCEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC
T ss_conf 889739999778998532431221455413562214889999988497979999999999999862--999755788532
Q ss_pred --E--------EEEEC----CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --0--------67520----331001234215771585377888533227603402122033566430476432222223
Q gi|254781043|r 356 --P--------IPVIP----TVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVF 421 (611)
Q Consensus 356 --~--------i~v~p----~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vf 421 (611)
| +++.| .+|||||||+||.++||++.+++ +||||||||||+ +|+||+||++||||++|+||
T Consensus 404 l~pi~~~Pfyav~~~~~~~~~~~~T~GGl~id~~~qVld~~g~----~IpGLYAaGe~a-gg~~g~~yl~G~sl~~~~vf 478 (491)
T PRK07121 404 LAPLDTGPFYALDLSVGTSMFPGFTLGGLRVDEDGEVLRADGA----PIPGLYAAGRCA-VGIASNGYVSGLSLADCSFS 478 (491)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCEECCCCEECCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf 2515679847999624754654461568009978857889989----809976675265-68887876468889999999
Q ss_pred CHHHHHHHHHHH
Q ss_conf 215677556654
Q gi|254781043|r 422 GRAAVIRASEMI 433 (611)
Q Consensus 422 G~~Ag~~aa~~~ 433 (611)
||+||++||+++
T Consensus 479 GriAG~~AA~~a 490 (491)
T PRK07121 479 GRRAGRHAAARA 490 (491)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999734
No 40
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=488.36 Aligned_cols=389 Identities=22% Similarity=0.217 Sum_probs=273.7
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHCCC
Q ss_conf 3105889899689999999999889829999868988--52104116534251378-----9999999999989984588
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT--RSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIKGSDW 88 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~--~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~~g~~ 88 (611)
.++||||||+|+|||+||++|+|+|++|+||||++.. +|+|.++ +|+.++.+. ...++.+.|++|+++.+.+
T Consensus 3 ~~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~~s-~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 81 (456)
T PRK08274 3 AMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHT-RNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (456)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHH-CCCHHHCCCHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 7388899998899999999999879909999832777888030553-864455368665426889999999999987289
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 77999999999988999999998699813279985510014641145678765640798666542667899999987312
Q gi|254781043|r 89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN 168 (611)
Q Consensus 89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g 168 (611)
++|+++++.++++++++++||+++|++|.....+.... .|........|..++..|.+++++.|
T Consensus 82 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~----------------~~~~~~~~g~G~~~~~~l~~~~~~~g 145 (456)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHV----------------ARTNAFFMGGGKALVNALYRSAERLG 145 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----------------CCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 87699999999723999999997196135668886444----------------79834147987999999999999739
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC-------CCCC------CCCCCEECCHHHH
Q ss_conf 30311315652000134430124689805870899506724741576565-------4334------2106401444887
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR-------AYFS------ATSAHTCTGDGAG 235 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~-------ly~~------~t~~~~~tGdG~~ 235 (611)
|++++++.+++||+| +|+|+||++.+ ..|+||+||||||||++ .|.. .++++.+||||+.
T Consensus 146 v~i~~~t~~~~Li~d-~g~V~Gv~~~~------~~i~AkaVVLAtGGf~~N~em~~~~~~~~~~~~~~~g~~~~tGdGi~ 218 (456)
T PRK08274 146 VEIRYDAPVTALELD-DGRFVAARAGA------ERIRARAVVLAAGGFEANREWLREAWGQPADNFLIRGTPYNQGVLLK 218 (456)
T ss_pred CEEEECCEEEEEEEE-CCEEEEEEECE------EEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 979938888999990-99999999253------89716869995789888999998644863224410589877669999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCC--C---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC--------C-CCCCEEH
Q ss_conf 887513653333222328884422--0---143045665578089832686125540765100--------4-7520111
Q gi|254781043|r 236 MVARAGLPLQDMEFVQFHPTGIYG--A---GCLITEGARGEGGYLVNSKGERFMERYAPSAKD--------L-ASRDVVS 301 (611)
Q Consensus 236 mA~~aGa~l~~mEf~qfhPt~~~~--~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~e--------l-~~rd~~s 301 (611)
||+++||.+.+ ++.|+|++.+.. | +.+.+.......+++||.+|+||++|..+.... . ...+.++
T Consensus 219 ma~~aGA~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~Vn~~G~RF~nE~~~~~~~~~a~~~~~~~~~~~~~~ 297 (456)
T PRK08274 219 MLLDAGADAIG-DPSQCHAVAIDARAPLYDGGICTRIDCVPLGIVVNRDGERFYDEGEDFWPKRYAIWGRLVAQQPGQIA 297 (456)
T ss_pred HHHHCCCCCCC-CCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 99983987347-86513457741688877775012101344048999999861568877552069887799983999717
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEE-EC------CCCHHHHHHHHHHHHHHHHHH------------CCCCCCCC----E--
Q ss_conf 56889988178888888746886-11------179899999853799999764------------36786544----0--
Q gi|254781043|r 302 RCMMMEIREGRGVGKSKDHIHLY-LN------HLDPAVLQERLPGISESARIF------------AGVDVTRD----P-- 356 (611)
Q Consensus 302 ~ai~~ei~~g~g~~~~~~~v~ld-~~------~~~~~~l~~~~~~~~~~~~~~------------~g~D~~~~----~-- 356 (611)
+.|+.+-...+........+--| +. .+|++.|.+.+..+++.+... .+++|.+. |
T Consensus 298 ~~i~D~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~pi~ 377 (456)
T PRK08274 298 YQIFDAKAIGRFMPPVFPPIQADSLEELAEKLGLDAEAFVRTVRAYNAACRPGTFDPTVLDDCRTEGLTPPKSHWARPLD 377 (456)
T ss_pred EEEECHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99977688755120247831147799999881999999999999999887518878633323222467777656567477
Q ss_pred ------EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ------67520331001234215771585377888533227603402122033566430476432222223215677556
Q gi|254781043|r 357 ------IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS 430 (611)
Q Consensus 357 ------i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa 430 (611)
+++.|..|||||||+||.++||++.++ ++|||||||||++++++||+|||+||||++|+||||+||++||
T Consensus 378 ~~Pfya~~~~p~~~~T~GGl~id~~~qVl~~~g----~pI~GLYAaGe~~~G~~~G~~y~~G~sl~~~~vfGriAG~~AA 453 (456)
T PRK08274 378 TPPFYAYPVRPGITFTYLGLKVDETARVRFADG----RPSPNLFAAGEMMAGNVLGKGYTAGVGMTIGTVFGRIAGEEAA 453 (456)
T ss_pred CCCEEEEEEEHHHCEECCCCEECCCCCEECCCC----CEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 798799998731026367825998886578999----8839988781346466576875247789999999999999998
Q ss_pred HHH
Q ss_conf 654
Q gi|254781043|r 431 EMI 433 (611)
Q Consensus 431 ~~~ 433 (611)
+++
T Consensus 454 ~~A 456 (456)
T PRK08274 454 RAA 456 (456)
T ss_pred HCC
T ss_conf 439
No 41
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=464.68 Aligned_cols=411 Identities=25% Similarity=0.330 Sum_probs=286.3
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHH---HHHHHHHHC
Q ss_conf 231058898996899999999998898299998689885210411653425137-----899999999---999899845
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQW---HLYDTIKGS 86 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~---~~~Dt~~~g 86 (611)
|+||||||||+|+|||+||++|+|+|++|+||||.+..+|+|.++.|+|.+... ...+||++. ++.+++...
T Consensus 4 D~e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~GG~s~~sgG~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~~~ 83 (552)
T PRK12844 4 DVTVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKVGGSTAMSGGVLWLPNNPLMLADGVPDSHEDALAYLDAVVGDQ 83 (552)
T ss_pred CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 77209799896789999999999889968999889996664798565854089999997189989999999999984555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEECCCCCCCC------------------C-----CCCC--
Q ss_conf 887799999999998899999999869981327998-5510014641145------------------6-----7876--
Q gi|254781043|r 87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAG-KIYQRPFGGHMQN------------------Y-----GEGP-- 140 (611)
Q Consensus 87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G-~~~~~~~gg~~~~------------------~-----~~g~-- 140 (611)
....++++.+.+++++++.++||++.|++|...+.- .++....+|+... . ..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~wl~~~g~~f~~~~~~~d~~~~~~gg~~~gr~~~~~~~d~~~~g~~~~~~~~~~~~~~~~ 163 (552)
T PRK12844 84 GPASSPERREAYLTAGPAMISFLEHQGMRFARCEGWSDYYPELPGGLARGRSVEAQPLDARKLGPWFAKLNPPMATPPGT 163 (552)
T ss_pred CCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHCCHHHHCCCCCCCCCCE
T ss_conf 65888999999996089999999965983564267752245667776688420255677565041144306652347740
Q ss_pred --------------CCCEEEE--------------E---CCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCE
Q ss_conf --------------5640798--------------6---66542667899999987312303113156520001344301
Q gi|254781043|r 141 --------------PVQRTCA--------------A---ADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCV 189 (611)
Q Consensus 141 --------------~~~R~~~--------------~---~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~ 189 (611)
..++... . --..|..++..|.+.+.+.||+++.++.+++||+| +|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~d-~G~V~ 242 (552)
T PRK12844 164 VVMTDEYKWLQLIKRTPRGMRTAARVGARTAAARIRGQKLLTNGAALIGRMLAAALAAGVPVWTNTPLTELVVE-DGRVT 242 (552)
T ss_pred EECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEC-CCEEE
T ss_conf 10112455444321043221234344345454421255334574899999999998769938935721367622-98599
Q ss_pred EEEEEEECCCEEEEECC-CCEEEECCCCCC------CCC-------CCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 24689805870899506-724741576565------433-------4210640144488788751365333322232888
Q gi|254781043|r 190 GVVAWQLETGEIHRFSA-KLVVLATGGYGR------AYF-------SATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255 (611)
Q Consensus 190 Gav~~~~~~G~~~~i~A-kaVILATGG~~~------ly~-------~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt 255 (611)
||++. .+|+.+.|+| |+||||||||+. -|. .+++.+.+||||+.||+++||.+.+|+..|++|.
T Consensus 243 Gv~a~--~~g~~~~i~A~kgVILATGGf~~N~em~~~~~p~~~~~~~~~~~~~~tGdGi~ma~~~GA~~~~m~~~~~~~~ 320 (552)
T PRK12844 243 GVVVV--RDGREVLITARRGVLLNSGGFGHNAEMRKRYQPQPNEGDWTIANPGDTGEGIEAAMRLGAALDLMDEAWWVPG 320 (552)
T ss_pred EEEEE--ECCEEEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEECCE
T ss_conf 99999--8994899984225799258720099999970887556764468988785799999985984025653314140
Q ss_pred CCCCCE---EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-----CCEEHHHHHHHHHHCC---C-CCCC------
Q ss_conf 442201---43045665578089832686125540765100475-----2011156889988178---8-8888------
Q gi|254781043|r 256 GIYGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDLAS-----RDVVSRCMMMEIREGR---G-VGKS------ 317 (611)
Q Consensus 256 ~~~~~~---~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~-----rd~~s~ai~~ei~~g~---g-~~~~------ 317 (611)
...+.+ .+........++++||.+|+||++|..+.. ++.. .+..++.|+.+-...+ + ....
T Consensus 321 ~~~~~~~~~~~~~~~~~~p~~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~ 399 (552)
T PRK12844 321 IPLPTGGPPYMHNSERSLPGSIIVDRAGRRFCNEAGSYM-EVGRRMYANDAVPAWMIMDSRYRKRYLFGDIPPGPTPQEW 399 (552)
T ss_pred EECCCCCCCCCCCCHHCCCCEEEECCCCCCCCCCCCCHH-HHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCCCCCHHHH
T ss_conf 467899754213312218845998999984756777589-9999998288975799988799965233547875257999
Q ss_pred --CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------------------CE---EEE
Q ss_conf --87468-86-1------11798999998537999997643678654-------------------------40---675
Q gi|254781043|r 318 --KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR-------------------------DP---IPV 359 (611)
Q Consensus 318 --~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~-------------------------~~---i~v 359 (611)
...++ -| + -.+|++.|++.+..+++.|....+.|+.| -| +++
T Consensus 400 ~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dfgr~~~~~~~~~~d~~~~p~~~l~pi~~~PfYA~~~ 479 (552)
T PRK12844 400 LDSGYMKRADTIEELAGKCGIDPAGLAATVERFNRFAATGTDPDFHRGESAYDRYYGDPTNKPNPNLGPLDKAPFYAVRM 479 (552)
T ss_pred HHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 86697687599999998859699999999999999986499834476620222025676668872226356799899998
Q ss_pred ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2033100123421577158537788853322760340212203356643047-64322222232156775566542
Q gi|254781043|r 360 IPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRAAVIRASEMID 434 (611)
Q Consensus 360 ~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~Ag~~aa~~~~ 434 (611)
.|..|+|||||+||.++||++.+++ +|||||||||++ +|+||.||+| |+||.+|+|||||||++||..+.
T Consensus 480 ~p~~~~T~GGl~in~~~qVL~~~g~----pIpGLYAaGe~~-gg~~g~~y~g~G~sl~~~~~fGriAg~~AA~~~~ 550 (552)
T PRK12844 480 VPGDVGTSGGLLTDEYARVLDTDGS----VIPGLYATGNCT-ASVMGRTYPGAGASIGNSMVFGYIAALHAAGASS 550 (552)
T ss_pred EHHHCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8634635878129999716899989----849976666465-4778898665056288899999999999872200
No 42
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=453.25 Aligned_cols=423 Identities=22% Similarity=0.270 Sum_probs=292.9
Q ss_pred CCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC-----CCCCCHHHHHHH
Q ss_conf 053441332310588989968999999999988982999986898852104116534251378-----999999999998
Q gi|254781043|r 7 LKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN-----MTPDSWQWHLYD 81 (611)
Q Consensus 7 ~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~D 81 (611)
|..+.+.-|+||||||||+|.|||+||++|+|+|++|+||||.+..+|+|.++.|+|.+.... ...|+++.++.+
T Consensus 1 ~~~~e~~wD~e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~sgG~i~~~gt~~q~~~G~~d~~e~~~~~ 80 (584)
T PRK12835 1 MSGTEQNFDRTVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYSPDPDDVFGY 80 (584)
T ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEECCCCHHHHHHCCCCCHHHHHHH
T ss_conf 99877785775387998967899999999998899589996999987177873868352899999983898999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCC-CCEEEE--------------CC-----C---------
Q ss_conf 9984588779999999999889999999986998132--799-855100--------------14-----6---------
Q gi|254781043|r 82 TIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSR--NEA-GKIYQR--------------PF-----G--------- 130 (611)
Q Consensus 82 t~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r--~~~-G~~~~~--------------~~-----g--------- 130 (611)
+.....+..++++++.+++++++.++||++.+..|.. .++ ..++.. ++ +
T Consensus 81 l~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~gg~~~g~~~~~~~~d~~~lg~~~~~~~~~ 160 (584)
T PRK12835 81 LKQITGGLVSDARLRQYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGDDEQHLLPP 160 (584)
T ss_pred HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 99973888899999999970399999999629635675127865324345687556753245665343315432223674
Q ss_pred ------CCCCCC------------CCCCC-----CCEEE----E--ECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf ------411456------------78765-----64079----8--6665426678999999873123031131565200
Q gi|254781043|r 131 ------GHMQNY------------GEGPP-----VQRTC----A--AADRTGHAILHTLYGQALKNNAEFFIEYFALDLI 181 (611)
Q Consensus 131 ------g~~~~~------------~~g~~-----~~R~~----~--~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li 181 (611)
|++... ..+.. ..|.. + .....|+.+...|...+.+.||+++.++++++||
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li 240 (584)
T PRK12835 161 LALAPKGIWFAPKDLRLFYQVRQSWAGKAVLLKLIWRMVRARVFGDRMAAIGQSLAARLRLALKEAGVPLWLDSPMTELI 240 (584)
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCEEEECCCHHEEE
T ss_conf 10045651014321112232022446520122344545454430431100248899999999996498489557001447
Q ss_pred ECCCCCCEEEEEEEECCCEEEEECCC-CEEEECCCCCCC------CC------CCCCCCEECCHHHHHHHHHCCCCCCCC
Q ss_conf 01344301246898058708995067-247415765654------33------421064014448878875136533332
Q gi|254781043|r 182 INSEGCCVGVVAWQLETGEIHRFSAK-LVVLATGGYGRA------YF------SATSAHTCTGDGAGMVARAGLPLQDME 248 (611)
Q Consensus 182 ~d~dG~V~Gav~~~~~~G~~~~i~Ak-aVILATGG~~~l------y~------~~t~~~~~tGdG~~mA~~aGa~l~~mE 248 (611)
+|++|+|+||++. .+|+.+.|+|+ +||||||||+.- |. .+++.+.+||||+.||.++||.+.+|+
T Consensus 241 ~d~~G~V~Gv~a~--~~g~~~~i~A~kgVVLATGGf~~N~em~~~~~p~~~~~~~~g~p~~tGDGi~ma~~~GA~~~~~~ 318 (584)
T PRK12835 241 TDPDGAVVGAVVE--RDGRPVRIGARRGVILASGGFDHDMDWRKEHLPELEKDWSFGNPANTGDGIRAGEKVGAATDLLD 318 (584)
T ss_pred ECCCCCEEEEEEE--ECCEEEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 7699988999999--79907999703248991488666999999857112477445898877789999998599701443
Q ss_pred CCCCCCCCCCCCE---EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-----------CCC---CEE--HHHHHHHHH
Q ss_conf 2232888442201---430456655780898326861255407651004-----------752---011--156889988
Q gi|254781043|r 249 FVQFHPTGIYGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDL-----------ASR---DVV--SRCMMMEIR 309 (611)
Q Consensus 249 f~qfhPt~~~~~~---~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el-----------~~r---d~~--s~ai~~ei~ 309 (611)
..+.+|+...+.+ +++.+... .++++||.+|+||++|..+.. ++ .+. ..+ +++...-+.
T Consensus 319 ~~~~~p~~~~p~g~~~~~~~~~~~-~~~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~ 396 (584)
T PRK12835 319 EAWWFPAICWPDGRMQFMLNERMM-PAQFIVNGAGKRFINEAAPYM-DFAHAMIDGQRSGVTHIPCWLITDIRSFSRYVV 396 (584)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCC-CCEEEECCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCCEEEEEECHHHHHHHCC
T ss_conf 000068641799842440044567-755798999866887775265-699999962223888750899976899865311
Q ss_pred HCCCCCC--------CCC---------EEEEEE---------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC---------
Q ss_conf 1788888--------887---------468861---------11798999998537999997643678654---------
Q gi|254781043|r 310 EGRGVGK--------SKD---------HIHLYL---------NHLDPAVLQERLPGISESARIFAGVDVTR--------- 354 (611)
Q Consensus 310 ~g~g~~~--------~~~---------~v~ld~---------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~--------- 354 (611)
.+.-... .+. .+.... -.+|++.|++....+++.|..-...|+.|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gvd~~~L~~TV~rYN~~~~~G~D~dFgr~~~~~~~~~ 476 (584)
T PRK12835 397 GGHLPIPKIPFAPVPTGRKVPQAWLESGVVKAAHTWDELAAKIGVPAENLRATAERFNELARKGHDDDFNRGDSAYDNYY 476 (584)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
T ss_conf 55556765555545545311599975695676399999998829898999999999998875299845675521344025
Q ss_pred ----------CE--------EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCC
Q ss_conf ----------40--------6752033100123421577158537788853322760340212203356643047-6432
Q gi|254781043|r 355 ----------DP--------IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSL 415 (611)
Q Consensus 355 ----------~~--------i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl 415 (611)
.| +++.|..++|+|||+||.++||++.+++ +||||||||||+ +|+||-||+| |++|
T Consensus 477 gdp~~p~~~l~pi~~~PfYA~~~~~~~~~T~GGl~in~~~qVLd~dg~----pIpGLYAaGe~~-gg~~g~~Y~g~G~~l 551 (584)
T PRK12835 477 GDPTLPNPNLYPLGKPPYYAFRIILGDLGTSGGLRTDEHARVLRSDDS----VVPGLYAVGNTS-AAVMGRSYAGAGATI 551 (584)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHH
T ss_conf 776788876575567997999986230546868329998861899979----869835685155-577878856404518
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 22222321567755665420265
Q gi|254781043|r 416 IDLVVFGRAAVIRASEMIDKSSP 438 (611)
Q Consensus 416 ~~~~vfG~~Ag~~aa~~~~~~~~ 438 (611)
..|+||||+||++||.+++....
T Consensus 552 g~a~tfGriAG~~aA~~~~~~~~ 574 (584)
T PRK12835 552 GPAMTFGYVAARHIAAVVAAAAA 574 (584)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88999999999999970154556
No 43
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=456.56 Aligned_cols=404 Identities=23% Similarity=0.272 Sum_probs=268.7
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHCCC
Q ss_conf 310588989968999999999988982999986898--852104116534251378-----9999999999989984588
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP--TRSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIKGSDW 88 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~--~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~~g~~ 88 (611)
+||||||||+|+|||+||++|+++|++|+||||.+. .+|+|.++.|+|.++... ..+||++.+++|++....+
T Consensus 1 ~e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s~G~~~~~~t~~Qk~~Gi~DS~e~~~~d~~~~a~~ 80 (549)
T PRK12834 1 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSFGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 80 (549)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99998998967899999999998799279996688889884677617787668999999848999999999999975278
Q ss_pred CCCHHH-----HHHHHHH-HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 779999-----9999998-8999999998699813279985510014641145678765640798666542667899999
Q gi|254781043|r 89 LGDVDA-----IQYLAME-APQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYG 162 (611)
Q Consensus 89 l~d~~l-----v~~~~~~-a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~ 162 (611)
-.+++. ++.+++. +.+.++||+++||.|....+ .. ..++......+.++||.+ ....+|..++..|.+
T Consensus 81 ~~~~d~~~~~~~~~~~~~~~~e~~~wL~~~Gv~f~~~~~--~~---~~~~~~~~g~g~s~pr~h-~~~~~G~~~~~~~~~ 154 (549)
T PRK12834 81 DRPEDHWPRQWAEAYVEFAAGEKRSWLHSLGLRFFPVVG--WA---ERGGGDAGGHGNSVPRFH-ITWGTGPGVVEPFVR 154 (549)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCC--CC---CCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHH
T ss_conf 985136789999999875111178999966986210344--11---247755678888777735-567877169999999
Q ss_pred HHH----HCCCEEECCCEEEEEEECCCCCCEEEEEEEE--------------CCCEEEEECCCCEEEECCCCCCC-----
Q ss_conf 987----3123031131565200013443012468980--------------58708995067247415765654-----
Q gi|254781043|r 163 QAL----KNNAEFFIEYFALDLIINSEGCCVGVVAWQL--------------ETGEIHRFSAKLVVLATGGYGRA----- 219 (611)
Q Consensus 163 ~~~----~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~--------------~~G~~~~i~AkaVILATGG~~~l----- 219 (611)
.+. +.+|+++.++++++||++ +|+|+||.+..+ ..|+ +.|+||+||||||||+.-
T Consensus 155 ~~~~~~~~~~v~~~~~t~a~~Li~~-~g~V~GV~~~~~~~~~~~~g~~~~~~~~g~-~~i~AkaVILATGGf~~N~em~~ 232 (549)
T PRK12834 155 RVREAAARGLVTFRFRHRVDELIVT-NGAVTGVRGTVLEPSDAPRGAASSRTVVGE-FEFRAQAVIVTSGGIGGNHELVR 232 (549)
T ss_pred HHHHHHHCCCEEEEECCEEEEEEEE-CCEEEEEEEEECCCCCHHCCCCCCCCCCCE-EEEECCEEEECCCCCCCCHHHHH
T ss_conf 9998741697089956885799975-998998886652566211044333334440-79978969990898764999998
Q ss_pred -CCC-----------CCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE-CC---CCCCCCCEEEEECCCCCC
Q ss_conf -334-----------21064014448878875136533332223288844220143-04---566557808983268612
Q gi|254781043|r 220 -YFS-----------ATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCL-IT---EGARGEGGYLVNSKGERF 283 (611)
Q Consensus 220 -y~~-----------~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l-~~---~~~rg~G~~l~n~~Gerf 283 (611)
|.+ +..|..++|||+.||.++||.+.+|+.+|.||+++.....+ .. ..+.+.++++||.+|+||
T Consensus 233 ~~~P~~~~~~~~~~~~g~~~~~~Gdgi~ma~~aGA~l~~~d~~~~~~~g~~~~~p~~~~~g~~~~~g~~~i~Vn~~G~Rf 312 (549)
T PRK12834 233 RNWPERLGRPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWDPIWPNHGIRILPGPSSLWFDATGNRL 312 (549)
T ss_pred HHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCC
T ss_conf 74923117875332138998888679999998199464552000145655678876765411432687405688889846
Q ss_pred CCCCCCCCCCCCCCC------------EEHHHHH-HHHH-HC---------------------CCCC--------CCCCE
Q ss_conf 554076510047520------------1115688-9988-17---------------------8888--------88874
Q gi|254781043|r 284 MERYAPSAKDLASRD------------VVSRCMM-MEIR-EG---------------------RGVG--------KSKDH 320 (611)
Q Consensus 284 ~~~y~~~~~el~~rd------------~~s~ai~-~ei~-~g---------------------~g~~--------~~~~~ 320 (611)
+++..|...++..++ +...++. ++.. .+ .+.+ .+..
T Consensus 313 ~~e~~~~~d~~~~~~~~~~~~~~~~~~i~d~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 391 (549)
T PRK12834 313 PAPLFPGFDTLGTLEHILKTGYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWRLLLRSRLGKGAPGPVEAFKDHGED- 391 (549)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC-
T ss_conf 8753345126889999874478606897036888887643121017431110199999876642153478999863767-
Q ss_pred EEEEEC----------------CCCHHHHHHHHHHHHHHHHHHCCCCC----------------------------CCCE
Q ss_conf 688611----------------17989999985379999976436786----------------------------5440
Q gi|254781043|r 321 IHLYLN----------------HLDPAVLQERLPGISESARIFAGVDV----------------------------TRDP 356 (611)
Q Consensus 321 v~ld~~----------------~~~~~~l~~~~~~~~~~~~~~~g~D~----------------------------~~~~ 356 (611)
|+... .++.+.+++........+....+.|+ .+-|
T Consensus 392 -~~~adtl~elA~~~~~l~~~~~id~~~l~~tv~~~~~~~~~~~~kd~~~~~~~~~~~~~~d~~~~~~~p~~~l~p~~gP 470 (549)
T PRK12834 392 -FVVADDLEELVAGMNALTGEPLLDAAHIRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVAKPHRLLDPAAGP 470 (549)
T ss_pred -EEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -5863889999998513033448899999999999986430554545001012121000354101356864245777688
Q ss_pred ---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ---67520331001234215771585377888533227603402122---033566430476432222223215677556
Q gi|254781043|r 357 ---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG---CASVHGANRLGSNSLIDLVVFGRAAVIRAS 430 (611)
Q Consensus 357 ---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a---~~g~hGanrlggnsl~~~~vfG~~Ag~~aa 430 (611)
+++.|..|+|||||+||.++|||+.+++ +|||||||||++ .+|+||.|||+||||.+|+||||+||++||
T Consensus 471 fyA~~~~~~~~~T~GGl~in~~~qVL~~~G~----pI~GLYAAGE~ag~~~gg~hG~n~l~G~sl~~~~~fGRiAg~~Aa 546 (549)
T PRK12834 471 LIAVRLHILTRKTLGGLETDLDSRVLGADGT----PLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAA 546 (549)
T ss_pred EEEEEEECCCCCCCCCEEECCCCCEECCCCC----EECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7999960367636768169999844899989----838807460225578896067786624438899999999999999
Q ss_pred HHH
Q ss_conf 654
Q gi|254781043|r 431 EMI 433 (611)
Q Consensus 431 ~~~ 433 (611)
+++
T Consensus 547 k~~ 549 (549)
T PRK12834 547 RAI 549 (549)
T ss_pred HHC
T ss_conf 629
No 44
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=441.27 Aligned_cols=420 Identities=20% Similarity=0.249 Sum_probs=286.6
Q ss_pred CCCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHH
Q ss_conf 620005344133231058898996899999999998898299998689885210411653425137-----899999999
Q gi|254781043|r 3 NSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQW 77 (611)
Q Consensus 3 ~~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~ 77 (611)
||-.+.+..+.-|.||||||||+| |||+||++|+|+|++|+||||.+..+|+|.+++|+|.+... ....||++.
T Consensus 2 ~~~~~~~~~~~~D~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~GG~s~~SgG~~~~~gt~~q~~~Gi~Ds~e~ 80 (566)
T PRK12845 2 HSATIPAGLPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGALWLPASPVLDEAGAGDTLER 80 (566)
T ss_pred CCCCCCCCCCCCCCEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHHCCCCCHHH
T ss_conf 766689999876555497998846-9999999999889938999689999857787277556588999997489999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCC--CCCC--------CCC-----EEEECCC-----CCCCCC
Q ss_conf 99989984588779999999999889999999986-9981--3279--------985-----5100146-----411456
Q gi|254781043|r 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHY-GVPF--SRNE--------AGK-----IYQRPFG-----GHMQNY 136 (611)
Q Consensus 78 ~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~-Gv~f--~r~~--------~G~-----~~~~~~g-----g~~~~~ 136 (611)
.+.++.....+.+++++++.|++++++.++||++. ++.| .+.. .|. +..++|. .+....
T Consensus 81 ~~~yl~~~~~~~~~~~~~~~~~d~~~~~~d~l~~~~~~~~~~~~~~~d~~~~~~gg~~~gr~~~~~p~d~~~~g~~~~~~ 160 (566)
T PRK12845 81 ARTYLDAVVGGSAPAERSAAFLDHGSATVEMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRL 160 (566)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHC
T ss_conf 99999997388898999999996259999999854774265336787556456677457775565656333201102213
Q ss_pred C------------CC--------------CCCCEEE-------------EECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf 7------------87--------------6564079-------------8666542667899999987312303113156
Q gi|254781043|r 137 G------------EG--------------PPVQRTC-------------AAADRTGHAILHTLYGQALKNNAEFFIEYFA 177 (611)
Q Consensus 137 ~------------~g--------------~~~~R~~-------------~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~ 177 (611)
. .+ ..+++.. ..-...|..++..|...+++.||+|++++.+
T Consensus 161 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~l~~~l~~~~~~~gV~i~~~t~~ 240 (566)
T PRK12845 161 RPGVMEVSIPMPVTGADYRWLNLMARVPRKALPRIAKRLAQGIGGLALGRRYAAGGQALAAGLFAGVLRAGIPIWTETSL 240 (566)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCEE
T ss_conf 87620256554445056666555430532101466655311545313100103451789999999999759927824414
Q ss_pred EEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------CC-------CCCCCCEECCHHHHHHHHHCCC
Q ss_conf 52000134430124689805870899506-7247415765654------33-------4210640144488788751365
Q gi|254781043|r 178 LDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------YF-------SATSAHTCTGDGAGMVARAGLP 243 (611)
Q Consensus 178 ~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y~-------~~t~~~~~tGdG~~mA~~aGa~ 243 (611)
++|+.| +|+|+||++. .+|+.+.|+| |+||||||||+.- |. .+++++++||||+.||.++||.
T Consensus 241 ~~Li~d-~grV~Gv~~~--~~g~~~~i~A~k~VILAtGGF~~N~em~~~~~~~~~~~~~~~g~~~~tGdGi~ma~~~GA~ 317 (566)
T PRK12845 241 VRLTDD-GGRVTGAVVD--HRGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAA 317 (566)
T ss_pred EEEEEC-CCEEEEEEEE--ECCCEEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 888605-9858999999--8990799982435899058855699999974676445675468999884799999981867
Q ss_pred CCCCCCCCCCCCCCCCCE----EECCCCCCCCCEEEEECCCCCCCCCCCCCC--C----C--C--CCCCEEHHHHHHHH-
Q ss_conf 333322232888442201----430456655780898326861255407651--0----0--4--75201115688998-
Q gi|254781043|r 244 LQDMEFVQFHPTGIYGAG----CLITEGARGEGGYLVNSKGERFMERYAPSA--K----D--L--ASRDVVSRCMMMEI- 308 (611)
Q Consensus 244 l~~mEf~qfhPt~~~~~~----~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~--~----e--l--~~rd~~s~ai~~ei- 308 (611)
+.+|+..+++|...+.++ .++.+ ....|+++||.+|+||++|..+.. . + . .|.. .++.|+.+.
T Consensus 318 ~~~m~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~i~Vn~~G~RF~nE~~~~~~~~~~~~~~~~~~~p~~-~~~~I~D~~~ 395 (566)
T PRK12845 318 IDLMDQAWWFPAVAPLPGGAPAVMLAE-RSLPGSLIVDQTGRRFVNEATDYMSFGQRVLERERAGDPVE-SMWIVFDQQY 395 (566)
T ss_pred CCCCCCCEECCCCCCCCCCCCCEEEEC-CCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC-CEEEEECHHH
T ss_conf 236660206760156799985045402-35673489889998514788767789999997775189876-3699986788
Q ss_pred HH-----CCCCCCC--------CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------
Q ss_conf 81-----7888888--------87468-86-1------11798999998537999997643678654-------------
Q gi|254781043|r 309 RE-----GRGVGKS--------KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR------------- 354 (611)
Q Consensus 309 ~~-----g~g~~~~--------~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~------------- 354 (611)
++ +...+.. ...++ .| + -.+|++.|++.+..+++.+..-.+.|+.|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~g~~~kadtleELA~~~gi~~~~L~~Tv~~yN~~~~~G~D~dFgr~~~~~~~~~gdp~ 475 (566)
T PRK12845 396 RNSYVFAAELFPRMPIPQAWYDAGIAHRADDLADLARAIGVPVDTFVATMRRFNEMAAAGVDSDFGRGRSAYDRYYGDPT 475 (566)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 74223221247776335888746744544879999999694999999999999999863998666877302320247755
Q ss_pred -------CE--------EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf -------40--------6752033100123421577158537788853322760340212203356643047-6432222
Q gi|254781043|r 355 -------DP--------IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDL 418 (611)
Q Consensus 355 -------~~--------i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~ 418 (611)
.| +++.|..++|+||++||.++||++.+++ +|||||||||++ +|+||.||+| |++|.+|
T Consensus 476 ~~p~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~~VL~~dg~----pIpGLYAaGe~a-gg~~g~~y~G~G~~lg~~ 550 (566)
T PRK12845 476 VTPNPNLRPLDRGPFYAVKMVLSDLGTCGGLRADERARVLREDGS----VIDGLYAIGNTA-ANAFGATYPGAGATIAQG 550 (566)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----CCCCEEECCCCC-CCCCCCCCCCCHHHHHHH
T ss_conf 688856473677986999964232543768139999854899969----849834675355-477889857322508889
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 223215677556654
Q gi|254781043|r 419 VVFGRAAVIRASEMI 433 (611)
Q Consensus 419 ~vfG~~Ag~~aa~~~ 433 (611)
+|||||||++||...
T Consensus 551 ~~fGriAg~~aA~~~ 565 (566)
T PRK12845 551 LVYGYIAAQDAAARL 565 (566)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998655
No 45
>PRK12839 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=439.23 Aligned_cols=416 Identities=22% Similarity=0.243 Sum_probs=278.2
Q ss_pred CCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHH
Q ss_conf 44133231058898996899999999998898299998689885210411653425137-----8999999999998998
Q gi|254781043|r 10 SYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIK 84 (611)
Q Consensus 10 ~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~ 84 (611)
+.+-+|+||||||||+|.|||+||++|++.|++|+||||.+..+|+|.+++|++.+... ...+||++.+..++..
T Consensus 2 ~p~~~~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~sgG~~~~~g~~~q~~~Gi~ds~e~~~~~l~~ 81 (574)
T PRK12839 2 TPEHMKHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCGGATTWSGGWAWTPGNSLARADGVNEDKEEFRTYLQH 81 (574)
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEECCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf 81311771578998968999999999998899289996899998435562764322899999971999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC---C----------CCEEE--ECCCCCCCC------------C
Q ss_conf 4588779999999999889999999986-99813279---9----------85510--014641145------------6
Q gi|254781043|r 85 GSDWLGDVDAIQYLAMEAPQSVYELEHY-GVPFSRNE---A----------GKIYQ--RPFGGHMQN------------Y 136 (611)
Q Consensus 85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~-Gv~f~r~~---~----------G~~~~--~~~gg~~~~------------~ 136 (611)
......++++++.|++++++.++||++. ++.|.... + |.... .+|.++... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~e~i~~l~~~~~~~~~~~~~~~d~~~~~~g~~~g~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 161 (574)
T PRK12839 82 VLGEYYQADKVDAFLDAAPEMVDFFEKKTDLQFVPGAKINDIYGNLPGAGTGHRSVGPKPFNGRRVPPSVLAKLRHQLYE 161 (574)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCC
T ss_conf 73644799999999970399999999668855623777641103576776587655776674301475665541233211
Q ss_pred ----C----CCC----------CCCEE-EEE------------------CCCCCHHHHHHHHHHHHHCCCEEECCCEEEE
Q ss_conf ----7----876----------56407-986------------------6654266789999998731230311315652
Q gi|254781043|r 137 ----G----EGP----------PVQRT-CAA------------------ADRTGHAILHTLYGQALKNNAEFFIEYFALD 179 (611)
Q Consensus 137 ----~----~g~----------~~~R~-~~~------------------~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~ 179 (611)
. .+. ..++. .|+ .-.+|..++..|.+.+.+.||+++.++.+++
T Consensus 162 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~al~~~l~~~~~~~Gv~i~~~t~~~~ 241 (574)
T PRK12839 162 TSFLGMGIMAGPDLTKFLSASQFDPKGWVHAARRVIVHLLDLVVHRRNMQLVNGTALTGRLLTSADDLGVDLRVSTSAVS 241 (574)
T ss_pred CCCCCCCEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf 23356520025368888753356862133444554312234330245554567299999999999982986996661479
Q ss_pred EEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC------CC---------CCCCCCEECCHHHHHHHHHCCCC
Q ss_conf 0001344301246898058708995067247415765654------33---------42106401444887887513653
Q gi|254781043|r 180 LIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA------YF---------SATSAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 180 Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l------y~---------~~t~~~~~tGdG~~mA~~aGa~l 244 (611)
||+|++|+|+||++.+ .+|++....+|+||||||||+.- |. .++++..+||||+.||..+||.|
T Consensus 242 Li~d~~G~V~GV~~~~-~~g~~~i~a~kgVVLATGGF~~N~em~~~~~p~~p~~~~~~~~~~~~~tGDGi~ma~~~GA~l 320 (574)
T PRK12839 242 LNTDNAGRVTGVKVQT-PDGLVDFEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAREVGARF 320 (574)
T ss_pred EEECCCCCEEEEEEEE-CCCEEEEEECCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 8761798488899981-795199983235899038843399999975745877555544478877648999999838871
Q ss_pred CCC--CCCCCCCCCCCCC-----EE---ECCCCCCCCCEEEEECCCCCCCCCCCCCC------CCCCCC--CEEHHHHH-
Q ss_conf 333--2223288844220-----14---30456655780898326861255407651------004752--01115688-
Q gi|254781043|r 245 QDM--EFVQFHPTGIYGA-----GC---LITEGARGEGGYLVNSKGERFMERYAPSA------KDLASR--DVVSRCMM- 305 (611)
Q Consensus 245 ~~m--Ef~qfhPt~~~~~-----~~---l~~~~~rg~G~~l~n~~Gerf~~~y~~~~------~el~~r--d~~s~ai~- 305 (611)
.++ ...+++|..+.+. +. ++.. ...|+++||.+|+||++|..+.. ....+. +..++.|+
T Consensus 321 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~--~~pg~i~Vn~~GkRF~nE~~~~~~~~~a~~~~~~~~~~~~~w~I~D 398 (574)
T PRK12839 321 VNDVKSPAAWCPVSLVPYRNGKVGTFPHIMDR--AKPGSIGVLATGKRFVNEANGYYDYVDAMLKAAPEGEPVASWQIAD 398 (574)
T ss_pred CCCCCCCCEECCEECCCCCCCCCCCCHHHHHH--CCCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 33655654132233033568863311115551--4885278878998750477747469999997341479862499976
Q ss_pred ----HHHHHCCCCCCCC-------CEEEEE---E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----------
Q ss_conf ----9988178888888-------746886---1------11798999998537999997643678654-----------
Q gi|254781043|r 306 ----MEIREGRGVGKSK-------DHIHLY---L------NHLDPAVLQERLPGISESARIFAGVDVTR----------- 354 (611)
Q Consensus 306 ----~ei~~g~g~~~~~-------~~v~ld---~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~----------- 354 (611)
.....+...+... ...... + -.+|++.|++.+..+++.++.-.+.|+.|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~TV~~yN~~~~~G~D~dFgr~~~~~~~~~gd 478 (574)
T PRK12839 399 SRFVRKFPLGMAKPLPVPLTPYLRSGYLVKGRTIEELAQKCGIDPAGLRATVTEFNENARDGVDPEFGRGSTAFNKYGGD 478 (574)
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
T ss_conf 89997554333567775303464268067549999999886959899999999998887549884558776323213677
Q ss_pred --------------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCC
Q ss_conf --------------40---67520331001234215771585377888533227603402122033566430-4764322
Q gi|254781043|r 355 --------------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR-LGSNSLI 416 (611)
Q Consensus 355 --------------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanr-lggnsl~ 416 (611)
.| +++.|..|+||||++||.++||++.+++ +|||||||||++ +|+||.|| +|||||.
T Consensus 479 ~~~~p~~~l~pI~~~PfYA~~~~p~~~~T~GGl~id~~~~VLd~~g~----pIpGLYAAG~~~-ggv~g~~y~~gG~slg 553 (574)
T PRK12839 479 PKNGPNPSLAPIEKGPFYAVKVVPGSFGTFAGLKADGKSRVLRDDDT----PIDGLYTAGNDQ-ASVMGGHYPAGGINLG 553 (574)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHHH
T ss_conf 56688744374667986999987031523888679988742899989----808865675355-5778888787377698
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 22223215677556654
Q gi|254781043|r 417 DLVVFGRAAVIRASEMI 433 (611)
Q Consensus 417 ~~~vfG~~Ag~~aa~~~ 433 (611)
+|+||||+||++||...
T Consensus 554 ~~~~fGriAG~~aA~~~ 570 (574)
T PRK12839 554 PALTFGYIAGRELANST 570 (574)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998620
No 46
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=437.45 Aligned_cols=414 Identities=23% Similarity=0.244 Sum_probs=277.5
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 231058898996899999999998898299998689885210411653425137-----899999999999899845887
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIKGSDWL 89 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~~g~~l 89 (611)
+.+|||||||+|+|||+||++|+++|++|+||||....+|+|.++.|++.+... ....||++.+..++.......
T Consensus 12 ~~d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~s~G~~~~~gt~~q~~~g~~Ds~e~~~~~~~~~~~~~ 91 (576)
T PRK12843 12 RADTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGADDSLEAARTYLDALVGDF 91 (576)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 78828699896889999999999889948999797999815666030012389999997589889999999999850887
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCC----------CCE-----EEECC----------------------CC
Q ss_conf 7999999999988999999998-6998132799----------855-----10014----------------------64
Q gi|254781043|r 90 GDVDAIQYLAMEAPQSVYELEH-YGVPFSRNEA----------GKI-----YQRPF----------------------GG 131 (611)
Q Consensus 90 ~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~----------G~~-----~~~~~----------------------gg 131 (611)
+++++++.++++++++++||++ .++.|..... +.. ...+| +|
T Consensus 92 ~~~~l~~~~~~~s~~~i~~l~~~~~~~~~~~~~~~d~~~~~~g~~~~gr~~~p~~~~g~~~g~~~~~~~~~~~~~~~~gg 171 (576)
T PRK12843 92 SPEELRDAFLASGPKAIAFLEENSEVKFRPYASHPDYESDLPGATLRGRALEPQPFDGRKLGADFDLLRPPIPEFTVLGG 171 (576)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHCCCCCCCCEECCC
T ss_conf 82999999996239999999965596455447787510367887546752456677544412036540677643211065
Q ss_pred CCCCCCC-------CCCC---------------CEEEEECC---CCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCC
Q ss_conf 1145678-------7656---------------40798666---542667899999987312303113156520001344
Q gi|254781043|r 132 HMQNYGE-------GPPV---------------QRTCAAAD---RTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEG 186 (611)
Q Consensus 132 ~~~~~~~-------g~~~---------------~R~~~~~d---~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG 186 (611)
+...... ...+ .|..+... ..|..++..|.+++.+.||+++.++.+++|++| +|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~L~~d-~g 250 (576)
T PRK12843 172 MMVDRTDVLHLLALFKSWRAFRHAARLLLRYARDRLRYARGTRLVMGNALVARLLYSLRKRGVRILTQTDVESLETD-HG 250 (576)
T ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEE-CC
T ss_conf 00144565554202334056777887764300111024677543440899999999999749879937851588841-99
Q ss_pred CCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------C------CCCCCCCEECCHHHHHHHHHCCCCCCC--CCCC
Q ss_conf 30124689805870899506-7247415765654------3------342106401444887887513653333--2223
Q gi|254781043|r 187 CCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------Y------FSATSAHTCTGDGAGMVARAGLPLQDM--EFVQ 251 (611)
Q Consensus 187 ~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y------~~~t~~~~~tGdG~~mA~~aGa~l~~m--Ef~q 251 (611)
+|+||++. ++|+.+.|+| |+||||||||+.- | ..+++.+++||||+.||.++||.+.++ .+..
T Consensus 251 ~V~Gv~~~--~~g~~~~i~A~k~VVLATGGf~~N~em~~~y~p~~~~~~~~~~~~~tGdGi~ma~~~GA~l~~~~~~~~~ 328 (576)
T PRK12843 251 RVIGATVV--VGGVPRRIRARKGVVLATGGFNRHPELRRELLPATVARYSPCAPGHTGAAIDLALDLGASVGRGLLDVAF 328 (576)
T ss_pred EEEEEEEE--ECCEEEEEEECCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 79999999--8996799993470899169977699999973866434656688897858999999818774567756403
Q ss_pred CCCCCCCCC----EEECCC--CCCC-CCEEEEECCCCCCCCCCCCCC---C---C---CCCCCEEHHHHHHH-HHH--CC
Q ss_conf 288844220----143045--6655-780898326861255407651---0---0---47520111568899-881--78
Q gi|254781043|r 252 FHPTGIYGA----GCLITE--GARG-EGGYLVNSKGERFMERYAPSA---K---D---LASRDVVSRCMMME-IRE--GR 312 (611)
Q Consensus 252 fhPt~~~~~----~~l~~~--~~rg-~G~~l~n~~Gerf~~~y~~~~---~---e---l~~rd~~s~ai~~e-i~~--g~ 312 (611)
++|+..... ..++.. ..++ .|.++||.+|+||++|..+.. . + ..| ...++.|+.+ ..+ +.
T Consensus 329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~I~VN~~G~RF~nE~~~~~~~~~a~~~~~~~~~-~~~~~~I~D~~~~~~~~~ 407 (576)
T PRK12843 329 WAPVSVRRRADGSTAVFPHFYLDRGKPGTIAVNQAGERFVNESTSYHDFGTAMFAAGKTAP-GIPAYLITDAEFLRRYGL 407 (576)
T ss_pred ECCEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC-CCEEEEEECHHHHHHCCC
T ss_conf 4120046688886444633776505885699888888625677763189999998558799-931999989899975065
Q ss_pred CCCCCC----------CEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC--------------------
Q ss_conf 888888----------7468-86-1------11798999998537999997643678654--------------------
Q gi|254781043|r 313 GVGKSK----------DHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR-------------------- 354 (611)
Q Consensus 313 g~~~~~----------~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~-------------------- 354 (611)
+..... ..++ -| + -.+|++.|++.+..+++.+....+.|+.|
T Consensus 408 ~~~~~~~~~~~~~~~~g~~~~adTleELA~~~gid~~~L~~TV~ryN~~~~~G~D~dFgk~~~~~~~~~g~~~~~~~p~L 487 (576)
T PRK12843 408 GMVRPGNRNLAPFLRDGYLTVASTLAELAPKIGIDPAALAATVQRHNQSARTGIDPDFGRGATAYSRMNGDAMIGPNPNL 487 (576)
T ss_pred CCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
T ss_conf 65587641347786459579779999999884969999999999999887529996658774301023566445778564
Q ss_pred ----C-E---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHH
Q ss_conf ----4-0---6752033100123421577158537788853322760340212203356643047-64322222232156
Q gi|254781043|r 355 ----D-P---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRAA 425 (611)
Q Consensus 355 ----~-~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~A 425 (611)
+ | +++.|..|+|||||+||.++||++.+++ +|||||||||++ +|+||.||+| |++|.+|+||||+|
T Consensus 488 ~pI~~~PfYA~~~~p~~~~T~GGl~id~~~qVLd~dg~----pIpGLYAaG~~~-Gg~~g~~Y~g~G~slg~~~~fGriA 562 (576)
T PRK12843 488 GPIETAPFYAVRLYPGDIGAATGLVTDADARVLNADGQ----PISGLYACGNDM-ASIMGGTYPGPGITLGPAIVFAYLA 562 (576)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCEEECCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 73667996999986120453778108998744899988----829975784344-5789898774056388899999999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 775566542026
Q gi|254781043|r 426 VIRASEMIDKSS 437 (611)
Q Consensus 426 g~~aa~~~~~~~ 437 (611)
|++||++++..+
T Consensus 563 g~~AA~~~~~~~ 574 (576)
T PRK12843 563 ARHASKRTLARS 574 (576)
T ss_pred HHHHHHHHCCCC
T ss_conf 999998643022
No 47
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=437.30 Aligned_cols=401 Identities=23% Similarity=0.259 Sum_probs=275.7
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCC-EEEEC-----CCCCCCCHHHHHHHHHHHCC
Q ss_conf 3231058898996899999999998898299998689885210411653-42513-----78999999999998998458
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG-IAASL-----ANMTPDSWQWHLYDTIKGSD 87 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GG-i~a~~-----~~~~~Ds~~~~~~Dt~~~g~ 87 (611)
-|+||||||||+| |||+||++|+++|++|+||||.+..+|+|.++.|| +-+.. ....+||++..+++......
T Consensus 6 WD~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~GG~sa~sgGg~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~ 84 (515)
T PRK12837 6 FDEEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLQRAGTDDTIEDALTYYHAVVG 84 (515)
T ss_pred CCCCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 5787397998906-999999999987998899978898881887458876650799999975887899999999998727
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC----C---------CC--EEEECCC----CCCCCCCCCC-CCCEEE
Q ss_conf 877999999999988999999998-699813279----9---------85--5100146----4114567876-564079
Q gi|254781043|r 88 WLGDVDAIQYLAMEAPQSVYELEH-YGVPFSRNE----A---------GK--IYQRPFG----GHMQNYGEGP-PVQRTC 146 (611)
Q Consensus 88 ~l~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~----~---------G~--~~~~~~g----g~~~~~~~g~-~~~R~~ 146 (611)
+..++++++.+++++++.++||+. .|+.|.-.+ - |. +...+++ ++......+. ...|..
T Consensus 85 ~~~~~~l~~~~~~~~~~~i~wL~~~~~~~f~~~~~~dy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (515)
T PRK12837 85 DRTPRELQETYVRGGAPLIEYLEQDEHFQFAELPWPDYFGKAPKARADGQRHIAPKPLPVAAAGELREQIRGPLDTDRLG 164 (515)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHCC
T ss_conf 86739999999972799999998575851455466543577877756785212565666011301454304765433306
Q ss_pred EE---CCCCCHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCC---
Q ss_conf 86---665426678999999873-1230311315652000134430124689805870899506-724741576565---
Q gi|254781043|r 147 AA---ADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGR--- 218 (611)
Q Consensus 147 ~~---~d~tG~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~--- 218 (611)
+. .-..|+.++..|.+.+.+ .+++++.++.+++||.| +|+|+||++. .+|+.+.|+| |+||||||||+.
T Consensus 165 ~~~~~~~~gG~~l~~~~l~~~~~~~gv~i~~~t~~~~Li~d-~g~V~Gv~a~--~~g~~~~i~A~kgVILAtGGf~~N~e 241 (515)
T PRK12837 165 APPPDYLTGGRALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVE--RDGERVRVRARRGVLLAAGGFEQNDD 241 (515)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEEC-CCEEEEEEEE--ECCCEEEEEECCEEEECCCCCCCCHH
T ss_conf 87632214669999999999876169669926733788842-9859999998--69917999724658990689654899
Q ss_pred ---CC------CCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf ---43------342106401444887887513653333222328884422014304566557808983268612554076
Q gi|254781043|r 219 ---AY------FSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAP 289 (611)
Q Consensus 219 ---ly------~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~ 289 (611)
-| ..+++++++||||+.||+++||.+.+|...+++|.-..+.+. ........++++||++|+||++|..
T Consensus 242 m~~~~~~~~~~~~~~~~~~~tGdg~~ma~~~Ga~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~I~VN~~G~RF~nE~~- 319 (515)
T PRK12837 242 MRERYGVPGSARDTMGGPGNTGLAHRAGIAVGADTDLMDQAWWSPGLTHPDGR-SAFALWFTGGIFVDQHGERFVNESA- 319 (515)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCC-CCEEECCCCEEEECCCCCCCCCCCC-
T ss_conf 99970897555665589887649999999819971356612055762378986-4010002643898788883244878-
Q ss_pred CCCCCCCCCEEHHHHHHHHHHCCCCC--------------C-CC-------------CEEEEE---EC------CCCHHH
Q ss_conf 51004752011156889988178888--------------8-88-------------746886---11------179899
Q gi|254781043|r 290 SAKDLASRDVVSRCMMMEIREGRGVG--------------K-SK-------------DHIHLY---LN------HLDPAV 332 (611)
Q Consensus 290 ~~~el~~rd~~s~ai~~ei~~g~g~~--------------~-~~-------------~~v~ld---~~------~~~~~~ 332 (611)
++|.+++++..+...+.... . .. ...+.. +. .+|++.
T Consensus 320 ------~~~~~~~a~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~adTleeLA~~~gi~~~~ 393 (515)
T PRK12837 320 ------PYDRLGRAVIAEIDSGGMTLPFWMIYDDREGEVPPVKATNVSMVEAAKYRAAGLWRTADTLEELAAKIGVPADA 393 (515)
T ss_pred ------CHHHHHHHHHHHHCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHH
T ss_conf ------27689999995201688665469997601043567443454533758774258166459899999986959999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC---------------------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 9998537999997643678654---------------------40---67520331001234215771585377888533
Q gi|254781043|r 333 LQERLPGISESARIFAGVDVTR---------------------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPER 388 (611)
Q Consensus 333 l~~~~~~~~~~~~~~~g~D~~~---------------------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t 388 (611)
|++....+++.+..-.+.|+.| -| +++.|+.|+|+||++||.++||++.+++
T Consensus 394 L~~Tv~~yN~~~~~G~D~dFgk~~~~~~r~~~~~~~~l~~i~~~PfYa~~~~~~~~~T~GGl~in~~~qVl~~~g~---- 469 (515)
T PRK12837 394 LTATVARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDTAARVLDTDGR---- 469 (515)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCCCCCEEECCCCC----
T ss_conf 9999999999985399966788863111223678876540677997999974454420768579998747899989----
Q ss_pred CCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2276034021220335664304-764322222232156775566
Q gi|254781043|r 389 FAPGLMAIGEAGCASVHGANRL-GSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 389 ~i~GLyAaGe~a~~g~hGanrl-ggnsl~~~~vfG~~Ag~~aa~ 431 (611)
+|||||||||++ +|+||.+|+ |||+|.+|+|||||||+++|.
T Consensus 470 pI~GLYAaGe~~-ggv~g~~Y~ggG~~lg~~~~FGriA~~~~ag 512 (515)
T PRK12837 470 PIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAVLDMAG 512 (515)
T ss_pred EECCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 809966676655-5888798265578898899999999999845
No 48
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=436.16 Aligned_cols=412 Identities=23% Similarity=0.283 Sum_probs=282.3
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHCCC
Q ss_conf 32310588989968999999999988982999986898852104116534251378-----9999999999989984588
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIKGSDW 88 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~~g~~ 88 (611)
-++||||||||+|+|||+||++|+++|++|+||||.+..+|+|.++.|+|.+.... ..+||++.+..++......
T Consensus 2 ~~ee~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~sgg~~~~~~t~~q~~~Gi~Ds~e~~~~~l~~~~~~ 81 (560)
T PRK07843 2 TGQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVKDTPEAARTYLHSIIGD 81 (560)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 98665789989678999999999988998899969999770777723666637999999738988999999999986177
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCC-CCEE------------E--ECC----CCCCCCCCC----------
Q ss_conf 7799999999998899999999869-98132799-8551------------0--014----641145678----------
Q gi|254781043|r 89 LGDVDAIQYLAMEAPQSVYELEHYG-VPFSRNEA-GKIY------------Q--RPF----GGHMQNYGE---------- 138 (611)
Q Consensus 89 l~d~~lv~~~~~~a~~~i~~Le~~G-v~f~r~~~-G~~~------------~--~~~----gg~~~~~~~---------- 138 (611)
..+++.++.+++++++.++||.+.. +.|.-.+. ..++ . .++ .|.......
T Consensus 82 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~w~~~~~d~~~~~~g~~~~g~~~~p~~~~~~~~g~~~~~l~~~~~~~p~~~ 161 (560)
T PRK07843 82 VVEPERIDTYLDRGPEMLSFVLKHTPLKMCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLNV 161 (560)
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 68999999998638999999996586317763677643434667732775124556651112654233466533355550
Q ss_pred ------------CCCCCE-----------EEE------ECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCE
Q ss_conf ------------765640-----------798------666542667899999987312303113156520001344301
Q gi|254781043|r 139 ------------GPPVQR-----------TCA------AADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCV 189 (611)
Q Consensus 139 ------------g~~~~R-----------~~~------~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~ 189 (611)
....++ .+. .....|..++..|...+++.||+++.++.+++||+| +|+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~~-~g~V~ 240 (560)
T PRK07843 162 VVMQQDYVRLNQLKRHPRGVLRSAKVGARTMWAKATGKNLVGMGRALIAPLRIGLRRAGVPVLLNTALTDLYVE-DGVVR 240 (560)
T ss_pred EEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHEEEC-CCEEE
T ss_conf 21045588875301276531333332011001101465201441899999999999769879975732303651-98799
Q ss_pred EEEEEEE---CCCEEEEECCC-CEEEECCCCCCC------CC-------CCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2468980---58708995067-247415765654------33-------4210640144488788751365333322232
Q gi|254781043|r 190 GVVAWQL---ETGEIHRFSAK-LVVLATGGYGRA------YF-------SATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 (611)
Q Consensus 190 Gav~~~~---~~G~~~~i~Ak-aVILATGG~~~l------y~-------~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf 252 (611)
||++.+. .+|+...|+|| +||||||||+.- |. .+++++.+||||+.||.++||.+.+|+..++
T Consensus 241 GV~~~~~~~~~~g~~~~i~A~kgVVLATGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGdGi~ma~~~GA~~~~m~~~~~ 320 (560)
T PRK07843 241 GVYVRDTHAAESGEPQLIRARRGVILASGGFEHNEQMRVKYQRAPITTEWTVGAKANTGDGILAAEKLGAALDLMDDAWW 320 (560)
T ss_pred EEEEECCCCCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHCHHHCCC
T ss_conf 99995045555784699960563899379854299999972777556664458989886799999980951314112326
Q ss_pred CCCCCCC--CEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC--------CC--CC---CCEEHHHHHHHH-HHC---CC
Q ss_conf 8884422--014304566557808983268612554076510--------04--75---201115688998-817---88
Q gi|254781043|r 253 HPTGIYG--AGCLITEGARGEGGYLVNSKGERFMERYAPSAK--------DL--AS---RDVVSRCMMMEI-REG---RG 313 (611)
Q Consensus 253 hPt~~~~--~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~--------el--~~---rd~~s~ai~~ei-~~g---~g 313 (611)
+|+.... +.+.+.+ ....|+++||.+|+||++|..+... .. .+ .+..++.|+.+- ++- .+
T Consensus 321 ~p~~~~~~~~~~~~~~-~~~~g~i~Vn~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~I~D~~~~~~~~~~~ 399 (560)
T PRK07843 321 GPTVPLVGGPWFALSE-RNSPGSIIVNMSGKRFMNESMPYVEACHHMYGGEYGQGPGPGENIPAWLVFDQRYRDRYIFAG 399 (560)
T ss_pred CCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHC
T ss_conf 6743579986201000-157856998999986888886477789999876640266766785379997558865321202
Q ss_pred CCCCC---------CEEE-EE-EC------CCCHHHHHHHHHHHHHHHHHHCCCCCCC--------------C-------
Q ss_conf 88888---------7468-86-11------1798999998537999997643678654--------------4-------
Q gi|254781043|r 314 VGKSK---------DHIH-LY-LN------HLDPAVLQERLPGISESARIFAGVDVTR--------------D------- 355 (611)
Q Consensus 314 ~~~~~---------~~v~-ld-~~------~~~~~~l~~~~~~~~~~~~~~~g~D~~~--------------~------- 355 (611)
...+. ..++ -| +. .+|++.|++.+..+++.|....+.|+.+ .
T Consensus 400 ~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gi~~~~L~~Tv~~yN~~~~~G~D~dFgr~~~~~~~~~gdp~~kp~~~l~~ 479 (560)
T PRK07843 400 LQPGQRIPSRWLESGVIVKADTLAELAGKIGLPADALTATVQRFNGFARSGVDEDFHRGESAYDRYYGDPTNKPNPNLGE 479 (560)
T ss_pred CCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf 58676214778644854644889999999694999999999999988852998555777123321257756688845363
Q ss_pred ----E---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHH
Q ss_conf ----0---6752033100123421577158537788853322760340212203356643047-6432222223215677
Q gi|254781043|r 356 ----P---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRAAVI 427 (611)
Q Consensus 356 ----~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~Ag~ 427 (611)
| +++.|..|+|+||++||.++||++.+++ +|||||||||++ +|+||.+|+| |+||.+|+|||||||+
T Consensus 480 i~~~PfYA~~~~p~~~~T~GGl~in~~~qVL~~dg~----pIpGLYAaGe~~-gg~~g~~y~g~G~slg~~~~fGriAg~ 554 (560)
T PRK07843 480 ISHPPFYAAKMVPGDLGTKGGLRTDVNGRVLRDDGS----VIPGLYAAGNVS-APVMGHTYAGPGGTIGPAMTFGYLAAL 554 (560)
T ss_pred CCCCCEEEEEEEHHHCCCCCCCCCCCCCCEECCCCC----CCCCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 778998999987001345878319988725899988----809856885055-477879857404507889999999999
Q ss_pred HHHHH
Q ss_conf 55665
Q gi|254781043|r 428 RASEM 432 (611)
Q Consensus 428 ~aa~~ 432 (611)
+||..
T Consensus 555 ~aA~~ 559 (560)
T PRK07843 555 DIAAQ 559 (560)
T ss_pred HHHHC
T ss_conf 99844
No 49
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=433.59 Aligned_cols=412 Identities=23% Similarity=0.236 Sum_probs=273.6
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 231058898996899999999998898299998689885210411653425137-----899999999999899845887
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIKGSDWL 89 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~~g~~l 89 (611)
+.||||||||+|.|||+||++|+|+|++|+||||.+..+|+|.++.|.+.+... ....||++..+.++.......
T Consensus 3 tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~s~G~~~~~gt~~q~~~Gi~ds~e~~~~~~~~~~g~~ 82 (567)
T PRK12842 3 ELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREQGVADSREAARTYLKSETGAF 82 (567)
T ss_pred CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 73059699896889999999999879908999779988856798487812089999997099789999999999862755
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEE-------------------ECCCCCCCCCCC--------C--
Q ss_conf 7999999999988999999998-699813279985510-------------------014641145678--------7--
Q gi|254781043|r 90 GDVDAIQYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQ-------------------RPFGGHMQNYGE--------G-- 139 (611)
Q Consensus 90 ~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~-------------------~~~gg~~~~~~~--------g-- 139 (611)
.|+++++.|++++++.++||++ .++.|....-..+.. +..+........ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~dy~~~~~g~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 162 (567)
T PRK12842 83 YDAAAVEAFLDNGPEMVAFFERETEVKFVPTLYPDYHPDAPGGVDIGRSIVAAPYDARGLGKDMARLKPPLKTITFIGMM 162 (567)
T ss_pred CCHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCC
T ss_conf 88999999997279999999855686031256743246788872477502247766332140276516875433202300
Q ss_pred -----C-----------------CCCE--------EEE---ECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCC
Q ss_conf -----6-----------------5640--------798---666542667899999987312303113156520001344
Q gi|254781043|r 140 -----P-----------------PVQR--------TCA---AADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEG 186 (611)
Q Consensus 140 -----~-----------------~~~R--------~~~---~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG 186 (611)
. ..+| ..+ ..-.+|..++..|.+.+++.||+++.++.+++||+| +|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~~~~Gv~i~~~t~~~~Li~d-~g 241 (567)
T PRK12842 163 FNSSNADLKHFFNATRSLTSFLYVAKRLANHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELITE-GG 241 (567)
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEC-CC
T ss_conf 02542677888763015420256666754101344411566534553899999999999759889957888898862-99
Q ss_pred CCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------CC---------CCCCCCEECCHHHHHHHHHCCCCCCC--C
Q ss_conf 30124689805870899506-7247415765654------33---------42106401444887887513653333--2
Q gi|254781043|r 187 CCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------YF---------SATSAHTCTGDGAGMVARAGLPLQDM--E 248 (611)
Q Consensus 187 ~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y~---------~~t~~~~~tGdG~~mA~~aGa~l~~m--E 248 (611)
+|+||++.+ .+|+. .|+| |+||||||||++- |. .++.+.++||||+.||.++||.+.++ .
T Consensus 242 ~V~GV~a~~-~~g~~-~i~A~kgVILATGGf~~N~em~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~~~~~~~~ 319 (567)
T PRK12842 242 RVVGARVGD-GGGER-RITARRGVVLACGGFPHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAAGGAVDIRLPD 319 (567)
T ss_pred EEEEEEEEE-CCCEE-EEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 799999996-89559-9981333899038855499999863823346765345788888659999999828775555665
Q ss_pred CCCCCCCCCCC-C----EEECCCCCC-CCCEEEEECCCCCCCCCCCCCC--C-----------CCCCCCEEHHHHHHHHH
Q ss_conf 22328884422-0----143045665-5780898326861255407651--0-----------04752011156889988
Q gi|254781043|r 249 FVQFHPTGIYG-A----GCLITEGAR-GEGGYLVNSKGERFMERYAPSA--K-----------DLASRDVVSRCMMMEIR 309 (611)
Q Consensus 249 f~qfhPt~~~~-~----~~l~~~~~r-g~G~~l~n~~Gerf~~~y~~~~--~-----------el~~rd~~s~ai~~ei~ 309 (611)
+.+++|....+ + +++.....+ ..|.++||.+|+||++|..+.. . +....-|.-.+...+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~ 399 (567)
T PRK12842 320 AAAWMPVSKVPMGNGETGVFPHLLDRYKPGVIAVLRNGKRFTNESNSYHDVGAAMIKACRGQKETAMWLICDRATLRKYG 399 (567)
T ss_pred CEEECCCCCCCCCCCCEEECHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHC
T ss_conf 40231444666899864324124533588468777888753678776668999999971279997589998899997614
Q ss_pred HCCCCCCC--------CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------------
Q ss_conf 17888888--------87468-86-1------11798999998537999997643678654-------------------
Q gi|254781043|r 310 EGRGVGKS--------KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR------------------- 354 (611)
Q Consensus 310 ~g~g~~~~--------~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~------------------- 354 (611)
.+.-.+.. ...++ -| + -.+|++.|++.+..+++.+..-.+.|+.|
T Consensus 400 ~g~~~~~~~~~~~~~~~g~~~kadTleELA~~~gvd~~~L~~TV~~yN~~~~~G~D~dFgk~~~~~~~~~~dp~~~p~~~ 479 (567)
T PRK12842 400 LGFVKPAPMPLGPLLRNGYLIRGDTLAELAGKAGIDAAGLEETVRRYNVGAVKGIDPAFGRGSTSFNRYLGDPENKPNPC 479 (567)
T ss_pred CCCCCCCCCCHHHHHHCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 24357776344777537807872999999988396999999999999877402988233666412331146744588712
Q ss_pred ------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHH
Q ss_conf ------40---6752033100123421577158537788853322760340212203356643047-6432222223215
Q gi|254781043|r 355 ------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRA 424 (611)
Q Consensus 355 ------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~ 424 (611)
-| +++.|..|+|||||+||.++||++.+++ +|||||||||++ +|+||.||+| |+||.+|+||||+
T Consensus 480 l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~----pIpGLYAaG~~~-gg~~g~~y~g~G~slg~~~~fGri 554 (567)
T PRK12842 480 VAPIGSGPFYAVKVIMGDLGTFDGLATDVVGRVLDADGT----AIAGLYAVGNDR-ASIMGGNYPGAGITLGPIMTFGYI 554 (567)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCEECCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 165778997999977020616878119998735899979----859975675555-587989867506758889999999
Q ss_pred HHHHHHHHHH
Q ss_conf 6775566542
Q gi|254781043|r 425 AVIRASEMID 434 (611)
Q Consensus 425 Ag~~aa~~~~ 434 (611)
||++||..+-
T Consensus 555 Ag~~aA~~~~ 564 (567)
T PRK12842 555 TARHLAGVAG 564 (567)
T ss_pred HHHHHHHHCC
T ss_conf 9999997417
No 50
>KOG2404 consensus
Probab=100.00 E-value=0 Score=442.89 Aligned_cols=375 Identities=33% Similarity=0.492 Sum_probs=298.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 58898996899999999998898299998689885210411653425137899-----9999999998998458877999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-----PDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-----~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
-|+|||+|+|||+|+.+.-..|-.|+|+||....+|+|+-|+-|||++-.+.+ .|||+.++.||+..+++.++|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 07998774032356777874487599982467767752010257677761456531656676777640243203478689
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEC--CCCCHHHHHHHHHHHHHC---
Q ss_conf 999999988999999998-69981327998551001464114567876564079866--654266789999998731---
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAA--DRTGHAILHTLYGQALKN--- 167 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~--d~tG~~i~~~L~~~~~~~--- 167 (611)
|++.++.+|+.+|+||.. .++..+. + ...||| ++||++... .--|.+|+.+|..+..+.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~-----l--a~lgGH--------SvpRTHr~s~plppgfei~~~L~~~l~k~as~ 155 (477)
T KOG2404 91 LMEKLAANSASAVEWLRGEFDLKLDL-----L--AQLGGH--------SVPRTHRSSGPLPPGFEIVKALSTRLKKKASE 155 (477)
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCHHH-----H--HHHCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998736887899986330626689-----9--872587--------87753456899999608999999998876531
Q ss_pred ---CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC-------CC------CCCCCCCEECC
Q ss_conf ---230311315652000134430124689805870899506724741576565-------43------34210640144
Q gi|254781043|r 168 ---NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR-------AY------FSATSAHTCTG 231 (611)
Q Consensus 168 ---gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~-------ly------~~~t~~~~~tG 231 (611)
-++++.++.+++++ +++|+|.|++-.| .+|+-..+.+..||+|||||+- .| .++||.+.+||
T Consensus 156 ~pe~~ki~~nskvv~il-~n~gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tG 233 (477)
T KOG2404 156 NPELVKILLNSKVVDIL-RNNGKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTG 233 (477)
T ss_pred CHHHHHHHHCCEEEEEE-CCCCEEEEEEEEC-CCCCCCCEECCCEEEECCCCCCCHHHHHHHHCHHHCCCCCCCCCCCCC
T ss_conf 80777323136245644-2788077799975-789725010473699527767576899988386652477678874368
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCE-------EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHH
Q ss_conf 488788751365333322232888442201-------4304566557808983268612554076510047520111568
Q gi|254781043|r 232 DGAGMVARAGLPLQDMEFVQFHPTGIYGAG-------CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM 304 (611)
Q Consensus 232 dG~~mA~~aGa~l~~mEf~qfhPt~~~~~~-------~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai 304 (611)
||+.|-.+.||.|.||..+|.|||++..|. +|--|+.||.||+|+|..|+||.+ ||..||++.-.|
T Consensus 234 Dgqk~l~klga~liDmd~vqvhptgfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~n-------ELg~RDyvTgei 306 (477)
T KOG2404 234 DGQKMLMKLGASLIDMDQVQVHPTGFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGN-------ELGTRDYVTGEI 306 (477)
T ss_pred CHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHC-------CCCCCHHHHHHH
T ss_conf 4788898727441145204753467559887205788989998556762788334403220-------334310103767
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCC--------------------------------HHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 8998817888888874688611179--------------------------------899999853799999764367--
Q gi|254781043|r 305 MMEIREGRGVGKSKDHIHLYLNHLD--------------------------------PAVLQERLPGISESARIFAGV-- 350 (611)
Q Consensus 305 ~~ei~~g~g~~~~~~~v~ld~~~~~--------------------------------~~~l~~~~~~~~~~~~~~~g~-- 350 (611)
+.- . ++.....++|-+...- +..|...|..+.. .+.|.
T Consensus 307 ~kl----~-~P~ednrallVmnea~~e~~~n~inFY~~K~l~kK~~~~el~s~ln~t~sel~ttl~eY~~---~~~g~~~ 378 (477)
T KOG2404 307 QKL----K-CPIEDNRALLVMNEANYEAFGNNINFYMFKKLFKKYESAELASALNITESELKTTLEEYSK---SFTGKSE 378 (477)
T ss_pred HHH----C-CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHCCCCC
T ss_conf 751----3-8754660578834768999852103572898999864999999869889999999999877---5338888
Q ss_pred CCCC------------CEE---EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8654------------406---7520331001234215771585377888533227603402122033566430476432
Q gi|254781043|r 351 DVTR------------DPI---PVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSL 415 (611)
Q Consensus 351 D~~~------------~~i---~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl 415 (611)
||.- +++ ||.|.+||||||++||+..||++.+++ .|.|||||||+. +|+||+|||||+||
T Consensus 379 D~fgrk~f~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~ng~----vi~GlfAAGEvs-GGvHGaNRLgGsSL 453 (477)
T KOG2404 379 DPFGRKVFPVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKNGK----VIVGLFAAGEVS-GGVHGANRLGGSSL 453 (477)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCEEECHHHHHHCCCCC----EEEEEEECCEEC-CCCCCCCCCCCCCC
T ss_conf 8678711257788756406888776368885164675123210135895----766656724221-55245555576333
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 222223215677556
Q gi|254781043|r 416 IDLVVFGRAAVIRAS 430 (611)
Q Consensus 416 ~~~~vfG~~Ag~~aa 430 (611)
++|+||||+||+.|.
T Consensus 454 LeCVVFGr~Ag~~A~ 468 (477)
T KOG2404 454 LECVVFGRTAGKAAQ 468 (477)
T ss_pred EEEEEECCCCHHHHH
T ss_conf 012552110106677
No 51
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=426.84 Aligned_cols=417 Identities=22% Similarity=0.218 Sum_probs=273.7
Q ss_pred CCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHH
Q ss_conf 441332310588989968999999999988982999986898852104116534251378-----999999999998998
Q gi|254781043|r 10 SYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIK 84 (611)
Q Consensus 10 ~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~ 84 (611)
.|++ |.||||||||+|+|||+||++|++.|++|+||||.+..+|+|.++.|++.+.... ...||++....++..
T Consensus 4 ~~~w-D~e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~sgG~~~~~~t~~q~~~Gi~ds~e~~~~~~~~ 82 (579)
T PRK06134 4 AYPP-DLECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRH 82 (579)
T ss_pred CCCC-CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEECCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf 7897-577186998967899999999998799489997999887367773874301899999971998899999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCC-CEE-E---ECCCCCCCCC----------------------
Q ss_conf 458877999999999988999999998-69981327998-551-0---0146411456----------------------
Q gi|254781043|r 85 GSDWLGDVDAIQYLAMEAPQSVYELEH-YGVPFSRNEAG-KIY-Q---RPFGGHMQNY---------------------- 136 (611)
Q Consensus 85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~G-~~~-~---~~~gg~~~~~---------------------- 136 (611)
......|+++++.+++++++.++||++ .++.|.-...- .++ . ...+|++...
T Consensus 83 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (579)
T PRK06134 83 ELGAYYDAARIDAFLEAGPHMVAFFEKHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRRLGALLERLRKPLRET 162 (579)
T ss_pred HHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 62646899999999973799999999567723430676654343477865477523445576776322567635742442
Q ss_pred --------------------------------CCCCCCCEEEEEC---CCCCHHHHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf --------------------------------7876564079866---65426678999999873123031131565200
Q gi|254781043|r 137 --------------------------------GEGPPVQRTCAAA---DRTGHAILHTLYGQALKNNAEFFIEYFALDLI 181 (611)
Q Consensus 137 --------------------------------~~g~~~~R~~~~~---d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li 181 (611)
...+.+.+..+.. -..|..++..|.+.+++.||+++.++++++||
T Consensus 163 ~~~g~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~lv~~l~~~~~~~gv~i~~~t~~~~Li 242 (579)
T PRK06134 163 SFLGMPIMAGADLAAFLNPTRSLRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSARDLGVRIWESAPARELL 242 (579)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEE
T ss_conf 12576322347778876510351123333232211034444226654355508999999999997498899457320665
Q ss_pred ECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------CC---------CCCCCCEECCHHHHHHHHHCCCCC
Q ss_conf 0134430124689805870899506-7247415765654------33---------421064014448878875136533
Q gi|254781043|r 182 INSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------YF---------SATSAHTCTGDGAGMVARAGLPLQ 245 (611)
Q Consensus 182 ~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y~---------~~t~~~~~tGdG~~mA~~aGa~l~ 245 (611)
.| +|+|+||++.. ++....|+| |+||||||||+.- |. .+++++++||||+.||.++||.+.
T Consensus 243 ~d-~g~V~Gv~~~~--~~~~~~i~A~kaVILATGGf~~N~em~~~~~~~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~~ 319 (579)
T PRK06134 243 RE-DGRVAGAVVER--PGGLQRIRARKGVVLAAGGFPHDPARRAELFPRAPTGHEHLSLPPPGNTGDGLRLGEQAGGVVA 319 (579)
T ss_pred EC-CCEEEEEEEEE--CCCEEEEEECCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 03-99799999997--8946999822328982588665999998624147886455556899988289999998397423
Q ss_pred C--CCCCCCCCCCCCCC--E---EECCCCCCC-CCEEEEECCCCCCCCCCCCCCC------C-CCC-CCEEHHHHHHH-H
Q ss_conf 3--32223288844220--1---430456655-7808983268612554076510------0-475-20111568899-8
Q gi|254781043|r 246 D--MEFVQFHPTGIYGA--G---CLITEGARG-EGGYLVNSKGERFMERYAPSAK------D-LAS-RDVVSRCMMME-I 308 (611)
Q Consensus 246 ~--mEf~qfhPt~~~~~--~---~l~~~~~rg-~G~~l~n~~Gerf~~~y~~~~~------e-l~~-rd~~s~ai~~e-i 308 (611)
+ +..++.+|+...+. + .+.....++ .|.++||.+|+||++|..+... + ..+ .+..++.|+.+ +
T Consensus 320 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~g~I~VN~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~ 399 (579)
T PRK06134 320 TDLASPVAWAPVSRVPHADGSVGHFPHIIERGKPGLIGVLANGKRFVNEADSYHDYVAAMFAATPPGDPVRSWLICDHRF 399 (579)
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHH
T ss_conf 67555640234125678888501131466516984699899997857677757589999997403489875799988899
Q ss_pred HH--CCCCCCC----------CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC--------------
Q ss_conf 81--7888888----------87468-86-1------11798999998537999997643678654--------------
Q gi|254781043|r 309 RE--GRGVGKS----------KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR-------------- 354 (611)
Q Consensus 309 ~~--g~g~~~~----------~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~-------------- 354 (611)
.+ +.+.... ...+. -| + -.+|++.|++.+..+++.|....+.|+.|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTv~~YN~~~~~G~D~dFgr~~~~~~~~~gd~~~ 479 (579)
T PRK06134 400 LRRYGLGHVRPAPLPLGPYVRSGYLKRGASIEELARACGIDPDGLEATVTRYNRHARTGQDPDFGRGSTPYNRKQGDPAH 479 (579)
T ss_pred HHHCCCCCCCCCCCCHHHHHHCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 86514344677762347786378068619999999885959899999999999998519984447676311112476334
Q ss_pred ------------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------40---675203310012342157715853778885332276034021220335664304764322222
Q gi|254781043|r 355 ------------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLV 419 (611)
Q Consensus 355 ------------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~ 419 (611)
.| +++.|..|+|||||+||.++||++.+++ +||||||||+++++.+||.++++|++|.+|+
T Consensus 480 ~~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~~g~----pIpGLYAaG~~~gg~~~~~y~~~G~slg~~~ 555 (579)
T PRK06134 480 KGPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQAGQ----PIPGLYAAGNDMASVFGGFYPSGGITLGPAL 555 (579)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 788755475667996999987210547879659998705899979----8499846563434678888786187798999
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 232156775566542
Q gi|254781043|r 420 VFGRAAVIRASEMID 434 (611)
Q Consensus 420 vfG~~Ag~~aa~~~~ 434 (611)
|||||||++||....
T Consensus 556 ~fGriAG~~aA~~~~ 570 (579)
T PRK06134 556 TFGYIAGRHIAGASG 570 (579)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999986463
No 52
>pfam02910 Succ_DH_flav_C domain. This family contains fumarate reductases, succinate dehydrogenases and L-aspartate oxidases.
Probab=100.00 E-value=4.1e-37 Score=261.36 Aligned_cols=127 Identities=47% Similarity=0.773 Sum_probs=121.0
Q ss_pred HHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98788766509726875899999999999999998415157877545889999998888999999999999626255046
Q gi|254781043|r 470 REKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS 549 (611)
Q Consensus 470 ~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~ 549 (611)
+++||++||+||||+|++++|++|+++|+.|++++.++.+.+.+..||++|++++|+.||+.+|++++.|||+|+||||+
T Consensus 1 R~eLq~~M~~~~Gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~l~~~~El~nml~~a~~i~~aAl~R~ESRGa 80 (127)
T pfam02910 1 RKELQEIMQNHAGVFRTEEGLEEALEKIKELRERFKNVRVDDKSKVFNTDLIEALELGNLLELAEAIATSALARKESRGA 80 (127)
T ss_pred CHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 97899999826785888899999999999999997615236765332668999999841999999999998616556442
Q ss_pred EECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 23533778876668803213569999846898059999447444256755000027721679
Q gi|254781043|r 550 HAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 550 H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
|||.|||+ |||+||+|||+++++ .+|+++++|+||. ++.|+|++|+|
T Consensus 81 H~R~DyPe-----rdD~~wl~~t~~~~~-~~g~~~~~~~pv~---------~~~~~P~~R~Y 127 (127)
T pfam02910 81 HYREDYPE-----RDDENWLKHTLAYYD-GDGKPRLDYEPVV---------ITRIPPKERSY 127 (127)
T ss_pred EECCCCCC-----CCCCCCCEEEEEEEC-CCCCEEEEEECCE---------EEEECCCCCCC
T ss_conf 52477897-----764210048999998-9997478863215---------77778744779
No 53
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=100.00 E-value=2.6e-33 Score=236.48 Aligned_cols=382 Identities=22% Similarity=0.255 Sum_probs=248.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHCCCCEEEECCC-----CCCCC--HHHHHHHHHHHCCC
Q ss_conf 058898996899999999998898299998689885--2104116534251378-----99999--99999989984588
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR--SHTVAAQGGIAASLAN-----MTPDS--WQWHLYDTIKGSDW 88 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~--g~s~~A~GGi~a~~~~-----~~~Ds--~~~~~~Dt~~~g~~ 88 (611)
.||||||+|+|||||||+|++.|++|+|||-+|..+ ||+. . |=|--+.. ...|+ -|.+.+|..+-..+
T Consensus 2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNar--H-gRN~R~~hd~p~d~~~D~YpaEEf~~dL~~vtgg 78 (467)
T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNAR--H-GRNLRVAHDIPLDFLRDAYPAEEFRRDLLKVTGG 78 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--C-CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 237887642588999999863796798402478532578653--3-3451110157888645787378999875431278
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 77999999999988999999998699813279985510014641145678765640798666542667899999987312
Q gi|254781043|r 89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN 168 (611)
Q Consensus 89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g 168 (611)
..|+.+.+.+++++-....||.+.||.|.-.-.|.+.. .+|++|--+. |++|+.+|+.++++.|
T Consensus 79 ~t~~~l~~L~i~r~s~~~~w~~~~GVhl~P~~aG~lpy---------------sRrtaF~~GG-GkAl~NAly~sAerLG 142 (467)
T TIGR02485 79 RTDERLARLLIERASSILRWLIAHGVHLQPAAAGVLPY---------------SRRTAFLLGG-GKALVNALYASAERLG 142 (467)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCH---------------HHCCCCCCCC-HHHHHHHHHHHHHHCC
T ss_conf 74115789988720023689996794336632565760---------------1111123576-1899999999885557
Q ss_pred CEEECCCEEEEEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCC--C-----CCCCC------------CCCE
Q ss_conf 303113156520001344-30124689805870899506724741576565--4-----33421------------0640
Q gi|254781043|r 169 AEFFIEYFALDLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGR--A-----YFSAT------------SAHT 228 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~--l-----y~~~t------------~~~~ 228 (611)
|+|.++..|.+|..+++| +..++... ++.-..|.+|+||||+||++- - |.++- ..+.
T Consensus 143 v~Iry~~~V~ri~~~~~g~~~i~~~~v---~~~~~rI~t~a~VlaaGG~ganr~WLr~~~G~~a~geWPadn~~~RGTpy 219 (467)
T TIGR02485 143 VEIRYDAEVERIEREEDGRAFIAARLV---AAADERIATKAVVLAAGGLGANREWLRKAFGSRAEGEWPADNFLVRGTPY 219 (467)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEE---ECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHCEEECCCCH
T ss_conf 254147730002645678620121466---22688122468888617888897999983688757788511001258802
Q ss_pred ECCHHHHHHHH-HCCCCCCCCCCCCC--CCC----CCCCEEE--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC--
Q ss_conf 14448878875-13653333222328--884----4220143--0456655780898326861255407651004752--
Q gi|254781043|r 229 CTGDGAGMVAR-AGLPLQDMEFVQFH--PTG----IYGAGCL--ITEGARGEGGYLVNSKGERFMERYAPSAKDLASR-- 297 (611)
Q Consensus 229 ~tGdG~~mA~~-aGa~l~~mEf~qfh--Pt~----~~~~~~l--~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~r-- 297 (611)
+.|-=+..++. +||.-...- .|-| |-+ ++..|+. |+-. .=|+.||.+|+||-++ +...-|.
T Consensus 220 ~~G~LL~~ll~d~Ga~aiGdP-t~~HvVavDaRaP~~DgGIvtRid~~---~lG~VV~r~G~Rf~de----Ga~~~P~ry 291 (467)
T TIGR02485 220 AKGRLLKLLLDDEGADAIGDP-TDAHVVAVDARAPLYDGGIVTRIDSV---SLGVVVDRDGERFADE----GADSQPKRY 291 (467)
T ss_pred HCCHHHHHHHHHCCCCCCCCC-CCCCEEEECCCCCCCCCCEEEEECEE---ECCEEECCCCCCHHHC----CCCCCCCEE
T ss_conf 102689999854164303779-87306765688884578357441212---1131788977612413----667788413
Q ss_pred CEEHHHHHHH-----------HHHCCCCCCCCCEEEEE-------ECCCCHHHHHHHHHHHHH-------------HHHH
Q ss_conf 0111568899-----------88178888888746886-------111798999998537999-------------9976
Q gi|254781043|r 298 DVVSRCMMME-----------IREGRGVGKSKDHIHLY-------LNHLDPAVLQERLPGISE-------------SARI 346 (611)
Q Consensus 298 d~~s~ai~~e-----------i~~g~g~~~~~~~v~ld-------~~~~~~~~l~~~~~~~~~-------------~~~~ 346 (611)
.+|.|.|... -..+|-.+.--.++.-| .--+|++.|.+.+..+.. -|..
T Consensus 292 a~Wgr~~a~~Pgq~ay~lld~~a~~r~~P~a~pp~~Adtl~eLA~~lgidp~~l~~tld~~naaprvGqfdhttlddCht 371 (467)
T TIGR02485 292 AVWGRRVADRPGQLAYLLLDAKALKRLAPSALPPVKADTLEELAAKLGIDPDALAETLDAYNAAPRVGQFDHTTLDDCHT 371 (467)
T ss_pred ECHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC
T ss_conf 00136763589851532432057863587456978888879999985888889998650678787666555531000013
Q ss_pred HCCCCCCCC----EE--------EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 436786544----06--------752033100123421577158537788853322760340212203356643047643
Q gi|254781043|r 347 FAGVDVTRD----PI--------PVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNS 414 (611)
Q Consensus 347 ~~g~D~~~~----~i--------~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggns 414 (611)
.|+=|.|. +| |..|.+-|+-=||.||...+|...++. .-+.|||||+..|+-+=|-.+|+|.+
T Consensus 372 -eGvvPak~~~ar~i~v~Pf~aypm~PG~tFt~yGl~vDatarVr~nd~~----~~~~LFaAG~~MagnvLg~GYlaG~G 446 (467)
T TIGR02485 372 -EGVVPAKATAARTIAVVPFYAYPMKPGVTFTRYGLKVDATARVRLNDAR----ASDDLFAAGEIMAGNVLGKGYLAGAG 446 (467)
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -5664442345656533773220356785146505021122444542588----97247889889999873102322115
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 22222232156775566542
Q gi|254781043|r 415 LIDLVVFGRAAVIRASEMID 434 (611)
Q Consensus 415 l~~~~vfG~~Ag~~aa~~~~ 434 (611)
|+=+.|||+|||+.||..+.
T Consensus 447 ~T~~AVFG~IAG~~AAR~~~ 466 (467)
T TIGR02485 447 LTLAAVFGRIAGREAARLVR 466 (467)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 67778863567889852058
No 54
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.97 E-value=4.1e-28 Score=202.48 Aligned_cols=343 Identities=24% Similarity=0.285 Sum_probs=201.6
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
|||+|||+|+|||+||+.|++.|++|+|+||.+.... -..++||=.+-+.+. -+++.++. .+-.+++.++.
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~Gk-Kll~tG~GRCN~TN~--~~~~~~~~------~~~~~~~fl~~ 71 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGR-KILISGGGRCNVTNS--VEPDNFLS------RYPGNPHFLKS 71 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-EEEECCCCCCEECCC--CCHHHHHH------HCCCCHHHHHH
T ss_conf 9799999669999999999868995999958998750-158826896140789--99799986------25775799999
Q ss_pred HHHH--HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9998--89999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r 98 LAME--APQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 98 ~~~~--a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
.... ..+.++|++++|+++...++|+++.. + + ....++.+|..++.+.||+++.++
T Consensus 72 ~l~~F~~~d~~~ff~~~Gl~~~~e~~GrvfP~-----------------s----~-~A~~Vl~~L~~~l~~~gV~i~~~~ 129 (405)
T pfam03486 72 ALSRFTPWDFIAWFEELGVPLKEEDHGRLFPV-----------------S----D-KASDIVDALLNELKELGVKIRTRT 129 (405)
T ss_pred HHHHCCHHHHHHHHHHCCCEEEECCCCEEECC-----------------C----C-CHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99848999999999977990597789979789-----------------8----9-869999999999997797899588
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 56520001344301246898058708995067247415765654334210640144488788751365333322232888
Q gi|254781043|r 176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt 255 (611)
.+.++..++++ +..+ ... ++ .|.|++|||||||.+ | +. .+++|+|+.+|-+.|-.+..+ +|.
T Consensus 130 ~V~~I~~~~~~-~~~v---~~~-~~--~~~a~~vIlAtGG~s--~-p~---~GS~G~gy~~a~~lGh~i~~~-----~Pa 191 (405)
T pfam03486 130 RVLSVEKDDDG-RFRV---DTG-GE--ELEADSLVLATGGLS--W-PK---TGSTGFGYPLAEQFGHTIIPL-----RPA 191 (405)
T ss_pred EEEEEEECCCC-EEEE---EEC-CC--EEEECEEEEECCCCC--C-CC---CCCCHHHHHHHHHCCCCCCCC-----CCE
T ss_conf 87899975994-5999---948-95--897278999048866--5-65---577505999999749972457-----771
Q ss_pred C--CCCCE-EECCC---CCCCCCEEEEECC------CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 4--42201-43045---6655780898326------86125540765100475201115688998817888888874688
Q gi|254781043|r 256 G--IYGAG-CLITE---GARGEGGYLVNSK------GERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHL 323 (611)
Q Consensus 256 ~--~~~~~-~l~~~---~~rg~G~~l~n~~------Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~l 323 (611)
- +.... .+... +++-....+.+.+ ||=....|.-.+. +-- -+|+.+..+..+.. ...+.+
T Consensus 192 Lv~l~~~~~~~~~~~L~Gv~~~~~~~~~~~~~~~~~GellfT~~GlSGp--~il-~lS~~~~~~l~~~~-----~~~i~i 263 (405)
T pfam03486 192 LVPFTIDESFLFLKRLSGISLKNVVLSKGKGGISFRGELLFTHRGLSGP--AIL-QLSSYWRRAILKKG-----GVTLSI 263 (405)
T ss_pred ECCEEECCCHHHHHCCCCCCCCCEEEECCCCCEEEECCEEEECCCCCCH--HHH-HHHHHHHHHHHHCC-----CCEEEE
T ss_conf 1324606863344236996221568862787257841379975885644--898-87799999997579-----945999
Q ss_pred EEC-CCCHHHHHHHHHH---------------------HHHHHHHHCCCCCCC-------------------CEEEEEC-
Q ss_conf 611-1798999998537---------------------999997643678654-------------------4067520-
Q gi|254781043|r 324 YLN-HLDPAVLQERLPG---------------------ISESARIFAGVDVTR-------------------DPIPVIP- 361 (611)
Q Consensus 324 d~~-~~~~~~l~~~~~~---------------------~~~~~~~~~g~D~~~-------------------~~i~v~p- 361 (611)
|+- .+..+.+.+++.. +.....+..++|+.+ -+++|..
T Consensus 264 d~~P~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~l~~~~~~~l~~~lk~~~~~i~g~ 343 (405)
T pfam03486 264 DLLPDLDAEELAARLEKPRGAHPKKSLKNALAGLLPKRLALFLLEQAGIDPDKKLAQLSKKDLAALADLLKAWPFTVNGT 343 (405)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCEEECCCC
T ss_conf 81799999999999999988682323999888775899999999971998688636579999999999986697562576
Q ss_pred ----CCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ----331001234215771585377888533-227603402122033566430476432222223215677
Q gi|254781043|r 362 ----TVHYNMGGIPTNYWGEVLDANSKNPER-FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVI 427 (611)
Q Consensus 362 ----~~hy~~GGi~vd~~g~v~~~~~~~~~t-~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~ 427 (611)
-++-|.|||.+++ + +.+++++ .+||||.|||+- -+.| ..||.-|-.|+..|++||+
T Consensus 344 ~~~~~A~vT~GGV~~~e----i--~~~TmeSk~~pgLyf~GEvL--Dvdg--~~GGYNLq~AwssG~~AG~ 404 (405)
T pfam03486 344 EGYRTAFVTAGGVDTKE----I--SSKTMESKKVPGLFFAGEVL--DVDG--WTGGYNLQWAWASGYAAGQ 404 (405)
T ss_pred CCCCEEEEECCCCCHHH----C--CHHHHHHCCCCCEEEEEEEE--EECC--CCCCHHHHHHHHHHHHHHC
T ss_conf 88771698179764666----1--86667432799858999727--6035--8878999999999999759
No 55
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=205.88 Aligned_cols=399 Identities=23% Similarity=0.278 Sum_probs=241.1
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHCCCCEEEECCCC-----CCCCHHHHHHHHHHHCCC
Q ss_conf 31058898996899999999998898299998689--88521041165342513789-----999999999989984588
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF--PTRSHTVAAQGGIAASLANM-----TPDSWQWHLYDTIKGSDW 88 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~--~~~g~s~~A~GGi~a~~~~~-----~~Ds~~~~~~Dt~~~g~~ 88 (611)
.++||||||+|+|||.||.++++.|.+|++++... -..|...++-||.--+.... ..||.+.-.+|.+-.. .
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA-~ 82 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTA-A 82 (552)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCEEEECCHHHHHCCCCHHHHHHHHHHHCCC-C
T ss_conf 644279987527988999988726765999705554565651343126378846878822155204778877543012-4
Q ss_pred CCCHH------HHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 77999------99999998-899999999869981327998551001464114567876564079866654266789999
Q gi|254781043|r 89 LGDVD------AIQYLAME-APQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY 161 (611)
Q Consensus 89 l~d~~------lv~~~~~~-a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~ 161 (611)
.-+|+ .++.|.+- +.+.-.||.+.|+.|--.- -+ .+.|-+.....|.++|| .|....||..++....
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvV--GW---AERGG~~A~ghGNSVPR-FHiTWGTGPgvl~pFv 156 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVV--GW---AERGGSDAQGHGNSVPR-FHITWGTGPGVLEPFV 156 (552)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEC--CC---HHHCCCCCCCCCCCCCC-EEEEECCCCCHHHHHH
T ss_conf 688400053789999876641531578997287143101--20---42077666788887763-5876168864365999
Q ss_pred HHHHH---C-CCEEECCCEEEEEEECCCCCCEEEEEEEE--------------CCCEEEEECCCCEEEECCCCCCC----
Q ss_conf 99873---1-23031131565200013443012468980--------------58708995067247415765654----
Q gi|254781043|r 162 GQALK---N-NAEFFIEYFALDLIINSEGCCVGVVAWQL--------------ETGEIHRFSAKLVVLATGGYGRA---- 219 (611)
Q Consensus 162 ~~~~~---~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~--------------~~G~~~~i~AkaVILATGG~~~l---- 219 (611)
+++++ . -|++..++.+-.|++. +|+|+|+-+--+ ..|.| .|.|.+||+++||.++-
T Consensus 157 r~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdF-ef~A~aviv~SGGIGGnhelV 234 (552)
T COG3573 157 RRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDF-EFSASAVIVASGGIGGNHELV 234 (552)
T ss_pred HHHHHHHHCCCEEEEEEEECCCEEEE-CCEEEEECCCCCCCCCCCCCCCCCCEEECCE-EEEEEEEEEECCCCCCCHHHH
T ss_conf 99999875783389854011526853-8767610033217884456897643010325-776205999458768888888
Q ss_pred --CCC------------CCCCCEECCHHHHHHHHHCCCCCCCCC-CCCCCCCC-------CCCEEECCCCCCCCCEEEEE
Q ss_conf --334------------210640144488788751365333322-23288844-------22014304566557808983
Q gi|254781043|r 220 --YFS------------ATSAHTCTGDGAGMVARAGLPLQDMEF-VQFHPTGI-------YGAGCLITEGARGEGGYLVN 277 (611)
Q Consensus 220 --y~~------------~t~~~~~tGdG~~mA~~aGa~l~~mEf-~qfhPt~~-------~~~~~l~~~~~rg~G~~l~n 277 (611)
+++ +--|....|-.+.++..||+.+.|-.- +.| .-++ +..++-|- -|....+++
T Consensus 235 RrnWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHY-tEGirNwdPiWp~HgIRIl---PGPSSlWlD 310 (552)
T COG3573 235 RRNWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHY-TEGIRNWDPIWPNHGIRIL---PGPSSLWLD 310 (552)
T ss_pred HHCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCEEH-HHCCCCCCCCCCCCCEEEC---CCCCCEEEC
T ss_conf 752956550897588762886013622677888707824465311013-2145567876766650654---687322387
Q ss_pred CCCCCCCCCCCCCCCCCCC------------CCEEHHHHH-HHH---------------------HHCCCCCCC------
Q ss_conf 2686125540765100475------------201115688-998---------------------817888888------
Q gi|254781043|r 278 SKGERFMERYAPSAKDLAS------------RDVVSRCMM-MEI---------------------REGRGVGKS------ 317 (611)
Q Consensus 278 ~~Gerf~~~y~~~~~el~~------------rd~~s~ai~-~ei---------------------~~g~g~~~~------ 317 (611)
+.|+|.-.-..|...-|.+ .-+..+.|. +|. +.+++.+.+
T Consensus 311 a~G~RLp~P~~PGfdtlgTL~hi~~~G~~ysWFiLt~kiI~kEFaLSGsEQNPDLTGkd~rlll~Ra~k~pPgPV~AFmd 390 (552)
T COG3573 311 AAGKRLPVPLFPGFDTLGTLKHITSTGYDYSWFILTRKIIKKEFALSGSEQNPDLTGKDLRLLLRRAGKGPPGPVQAFMD 390 (552)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 77881887767885225588998625898324633088888774346655598863224999998715799951888876
Q ss_pred --CC-------------------EEEEEECCCCHHHHH------HHHH-----HHHHHHHHHCC------------CCCC
Q ss_conf --87-------------------468861117989999------9853-----79999976436------------7865
Q gi|254781043|r 318 --KD-------------------HIHLYLNHLDPAVLQ------ERLP-----GISESARIFAG------------VDVT 353 (611)
Q Consensus 318 --~~-------------------~v~ld~~~~~~~~l~------~~~~-----~~~~~~~~~~g------------~D~~ 353 (611)
.+ ...||..++..+... ..|. ....-++.+.| .||.
T Consensus 391 rGeDFvv~~~L~eLVa~MN~l~g~~~Ld~a~v~r~i~aRDrev~N~~sKDaQitairgARaylgdrl~R~akph~llDPa 470 (552)
T COG3573 391 RGEDFVVADTLRELVAGMNELTGGEPLDYATVEREIEARDREVVNKYSKDAQITAIRGARAYLGDRLTRVAKPHRLLDPA 470 (552)
T ss_pred CCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 37631406249999998630378874238999999876556552334642124667877888655454115840025866
Q ss_pred CCE-EEEECCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 440-6752033--10012342157715853778885332276034021220---33566430476432222223215677
Q gi|254781043|r 354 RDP-IPVIPTV--HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC---ASVHGANRLGSNSLIDLVVFGRAAVI 427 (611)
Q Consensus 354 ~~~-i~v~p~~--hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~---~g~hGanrlggnsl~~~~vfG~~Ag~ 427 (611)
.-| |-|.-.+ .-|.||+.+|.+++|++.++. ++||||||||+|. +|+||-|-|-|.-|..|+..||.||+
T Consensus 471 ~GPLIAVrLhiLTRKtLGGl~TdL~~rVl~A~Gq----PvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGR 546 (552)
T COG3573 471 NGPLIAVRLHILTRKTLGGLETDLDARVLGADGQ----PVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGR 546 (552)
T ss_pred CCCEEEEEEEEEEEHHCCCCCCCHHHHHHCCCCC----CCCCHHHCCHHCCCCCCCCCCHHHHCCCEECCEEECCHHHHH
T ss_conf 6965899887653000267121345563178997----885222221012247776323133125242122422602210
Q ss_pred HHHH
Q ss_conf 5566
Q gi|254781043|r 428 RASE 431 (611)
Q Consensus 428 ~aa~ 431 (611)
.|+.
T Consensus 547 aaa~ 550 (552)
T COG3573 547 AAAG 550 (552)
T ss_pred HHCC
T ss_conf 3203
No 56
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.96 E-value=3e-26 Score=190.30 Aligned_cols=353 Identities=21% Similarity=0.241 Sum_probs=200.0
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCC-EEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 31058898996899999999998898299998689885210411653-42513789999999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG-IAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GG-i~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
+.+||+|||+|.||||||+.|++.|.+|+|+||++-..---.+++|| .|..+ . ..++.++...=..++++ ...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn--~--~~~~~~ls~~p~~~~fl--~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTN--S--EAPDEFLSRNPGNGHFL--KSA 75 (408)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCC--C--CCHHHHHHHCCCCCHHH--HHH
T ss_conf 74218998887889999998864698799980586422136853788743326--5--05899997589820677--889
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
...|.. -+.|+|.+.+|+++.-.+.|.. |+ . .|+ -..|+++|..++.+.||+++.+
T Consensus 76 l~~ft~--~d~i~~~e~~Gi~~~e~~~Gr~----Fp-------------~----sdk-A~~Iv~~ll~~~~~~gV~i~~~ 131 (408)
T COG2081 76 LARFTP--EDFIDWVEGLGIALKEEDLGRM----FP-------------D----SDK-ASPIVDALLKELEALGVTIRTR 131 (408)
T ss_pred HHHCCH--HHHHHHHHHCCCEEEECCCCEE----CC-------------C----CCC-HHHHHHHHHHHHHHCCCEEEEC
T ss_conf 872798--9999999865971577468525----57-------------8----666-6899999999999759589814
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCC--CCCC
Q ss_conf 15652000134430124689805870899506724741576565433421064014448878875136533332--2232
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME--FVQF 252 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mE--f~qf 252 (611)
+.+..+..+++ + ..++..+|+ .|+|+++||||||.. | +. .++||+||.+|-..|-++.... -+.|
T Consensus 132 ~~v~~v~~~~~----~-f~l~t~~g~--~i~~d~lilAtGG~S--~-P~---lGstg~gy~iA~~~G~~I~~~rpalvpf 198 (408)
T COG2081 132 SRVSSVEKDDS----G-FRLDTSSGE--TVKCDSLILATGGKS--W-PK---LGSTGFGYPIARQFGHTITPLRPALVPF 198 (408)
T ss_pred CEEEEEEECCC----E-EEEECCCCC--EEECCEEEEECCCCC--C-CC---CCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 64776763385----5-899859998--898048999228867--7-87---8998402689997598405686655772
Q ss_pred CCCCCCCCE--EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEH-HHHH---HHHHHCCCCCCCCCEEEEEEC
Q ss_conf 888442201--4304566557808983268612554076510047520111-5688---998817888888874688611
Q gi|254781043|r 253 HPTGIYGAG--CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVS-RCMM---MEIREGRGVGKSKDHIHLYLN 326 (611)
Q Consensus 253 hPt~~~~~~--~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s-~ai~---~ei~~g~g~~~~~~~v~ld~~ 326 (611)
.+..+- .|-..+++..-..+.+.+|-.|=.+ -|.++.-+| -+++ .-++. .. ..++..+.+|+.
T Consensus 199 ---t~~~~~~~~l~gls~~~v~~~v~~~~g~~~~g~------~LfTh~GiSGPavl~~Ss~~~~-~~-~~~~~~i~iDll 267 (408)
T COG2081 199 ---TLDESFLERLAGLSLKSVPLSVTAGKGITFQGD------LLFTHRGLSGPAVLQLSSYWRL-LE-KKGGATLSIDLL 267 (408)
T ss_pred ---CCCHHHHHHHCCCCCCCEEEEEECCCCCEEECC------EEEEECCCCHHHHHHHHHHHHH-HC-CCCCCEEEEECC
T ss_conf ---478789987437865653789844888133045------6798057767999999999987-41-289826999648
Q ss_pred C-CCHHHHHHHH-----------------H-HHHHHHHHHCCCCCCC-------------------CEEEEECCC-----
Q ss_conf 1-7989999985-----------------3-7999997643678654-------------------406752033-----
Q gi|254781043|r 327 H-LDPAVLQERL-----------------P-GISESARIFAGVDVTR-------------------DPIPVIPTV----- 363 (611)
Q Consensus 327 ~-~~~~~l~~~~-----------------~-~~~~~~~~~~g~D~~~-------------------~~i~v~p~~----- 363 (611)
. ++.+.+...+ | .+.+......|| +.+ =++++..+.
T Consensus 268 P~~~~~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A 346 (408)
T COG2081 268 PDVDAEELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREA 346 (408)
T ss_pred CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCCHHHHHHHHHHHHCCEEECCCCCCCCEE
T ss_conf 9999999999997658556899999877326799999985357-874256559888999999975474433687654415
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 100123421577158537788853-3227603402122033566430476432222223215677556654
Q gi|254781043|r 364 HYNMGGIPTNYWGEVLDANSKNPE-RFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI 433 (611)
Q Consensus 364 hy~~GGi~vd~~g~v~~~~~~~~~-t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~ 433 (611)
.-|.|||.+++ + +.++++ ..+||||-|||+- -++|- +||.-+..|++.|+.||+.++++.
T Consensus 347 ~VT~GGV~~~e----i--d~kTmesk~vPGLyf~GEvl--Dv~g~--tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 347 EVTAGGVDTKE----I--DSKTMESKKVPGLYFAGEVL--DVTGW--TGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred EEECCCEEHHH----C--CHHHHHHHCCCCCEEEEEEE--EECCC--CCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77448331111----4--87777764089838877888--84057--774799999999999998656630
No 57
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.69 E-value=2.1e-15 Score=119.29 Aligned_cols=113 Identities=31% Similarity=0.401 Sum_probs=78.3
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
.|||||||+|.||++|||-|+++|++++|+++.. |+-.. ++ . . +
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~---GGqv~--------------~t--------~----~------I- 255 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI---GGQVK--------------DT--------V----G------I- 255 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCCE--------------EC--------C----C------E-
T ss_conf 8888998967899999999997799769992487---75313--------------03--------4----6------0-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
| .++|. + .-+|.++...|.+++++.|++++....
T Consensus 256 -------------e-----------------NypG~----------~------~i~G~eL~~~~~~qa~~~gv~~~~~~~ 289 (515)
T TIGR03140 256 -------------E-----------------NLISV----------P------YTTGSQLAANLEEHIKQYPIDLMENQR 289 (515)
T ss_pred -------------E-----------------ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEECCE
T ss_conf -------------0-----------------44898----------7------775799999999999974968991336
Q ss_pred EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 652000134430124689805870899506724741576565
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+..+-.+ ++ .. .....+|+ .|+||+||||||.-.+
T Consensus 290 v~~i~~~-~~-~~---~v~~~~g~--~~~aktVIiATGa~~r 324 (515)
T TIGR03140 290 AKKIETE-DG-LI---VVTLESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEECC-CC-CE---EEEECCCC--EEEECEEEECCCCCCC
T ss_conf 9999727-98-18---99987998--9993979995698735
No 58
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.67 E-value=1.9e-15 Score=119.68 Aligned_cols=115 Identities=23% Similarity=0.348 Sum_probs=77.5
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|++-|||||||+|.||++|||-|++.|++|+||||..++ |. +.. .
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~G-Gq-------i~~-t-------------------------- 45 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG-GQ-------ITI-T-------------------------- 45 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CC-------CEE-C--------------------------
T ss_conf 984472999995688999999999789967999668868-65-------563-6--------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
..+. .++|. + .-+|.+++..+.+++.+.|+++..
T Consensus 46 ----------------------------~~Ve--NYPG~----------~------~isG~eL~~~m~~qA~~~Gve~~~ 79 (555)
T TIGR03143 46 ----------------------------SEVV--NYPGI----------L------NTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred ----------------------------CCEE--ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf ----------------------------8568--78887----------7------986899999999999977969996
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 315652000134430124689805870899506724741576565
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
. .++.+-.++ .+.-+ ...+| .|+||+||||||.-.+
T Consensus 80 ~-~V~~i~~~g--~~k~V---~t~~g---~~~ak~VIIATGa~pr 115 (555)
T TIGR03143 80 A-EVLDVDFDG--DIKTI---KTARG---DYKTLAVLIATGASPR 115 (555)
T ss_pred E-EEEEEECCC--CCEEE---EECCC---EEEECEEEECCCCCCC
T ss_conf 5-699997379--95899---98897---8996979999999714
No 59
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.66 E-value=3e-15 Score=118.35 Aligned_cols=192 Identities=17% Similarity=0.151 Sum_probs=110.4
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC--CCHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887--7999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWL--GDVD 93 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l--~d~~ 93 (611)
.||||||||+|+.|+..|..|+..|++|+||||..+..|.|...++-|-.-+-+...|. +. ..+.++....+ .-+.
T Consensus 4 ~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~GTSs~ss~LiHgG~RY~~~d~-~~-are~l~e~~~l~~~Aph 81 (545)
T PRK11101 4 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDA-ES-ARECISENQILKRIARH 81 (545)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCH-HH-HHHHHHHHHHHHHHCHH
T ss_conf 61768999986899999999986799399998997616200120127122523123370-99-99999989999985916
Q ss_pred HHHH-------HHHHH----HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCC--CCHHHHHHH
Q ss_conf 9999-------99988----9999999986998132799855100146411456787656407986665--426678999
Q gi|254781043|r 94 AIQY-------LAMEA----PQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADR--TGHAILHTL 160 (611)
Q Consensus 94 lv~~-------~~~~a----~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~--tG~~i~~~L 160 (611)
+++. +-+.. ...+......|++...- +....++.++.-. ......++..|. ....++-++
T Consensus 82 lv~~~g~L~v~~~~~~~~~~~~~~~~~~~~gv~~~~i-~~~e~~~~eP~l~------~~l~ga~~~~Dg~vdp~rL~ia~ 154 (545)
T PRK11101 82 CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAI-DPQQALILEPAVN------PALIGAVKVPDGTVDPFRLTAAN 154 (545)
T ss_pred HCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE-CHHHHHHHCCCCC------HHCEEEEEECCEEECHHHHHHHH
T ss_conf 4030686389715022678999999999769984776-8999997586888------30207999552278738999999
Q ss_pred HHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 161 YGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 161 ~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+.+.+.|++++.++.|++|+.+ +|+|.|+.++|..+|+-+.|+||.||-|||=++
T Consensus 155 a~~A~~~GA~i~~~t~V~~i~~~-~g~v~gv~~~d~~tg~~~~i~ak~VINAAG~wa 210 (545)
T PRK11101 155 MLDAKEHGARILTAHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 210 (545)
T ss_pred HHHHHHCCCCEECCCEEEEEEEE-CCEEEEEEEEECCCCCEEEEEEEEEEECCCCCH
T ss_conf 99999748202026477899941-887999999986789689998569997667546
No 60
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.66 E-value=1.1e-15 Score=121.11 Aligned_cols=162 Identities=25% Similarity=0.308 Sum_probs=94.3
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
.|.+|||||||+|.||++||+.++++|++|+||||+...+++-.+ |++ + .+...+..+.|.. ++.
T Consensus 2 ~~~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~k~~s--G~~---l---~~~~l~~liP~~~-------~~a 66 (428)
T PRK10157 2 SEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT--GGR---L---YAHSLEHIIPGFA-------DSA 66 (428)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCE---E---CCCHHHHHCCCCH-------HCC
T ss_conf 887577899996889999999998789909999678889987611--754---0---5206888687841-------029
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
.++. +..+-.+.| .++++.+.. +|... ... .+ +...|.-.+ ..+-+.|.+++++.|++++.
T Consensus 67 P~er----------~V~~~~~~~-l~~~~~~~~-~~~~~--~~~--~~-~~~~y~V~R--~~FD~wLa~~Ae~aGA~i~~ 127 (428)
T PRK10157 67 PVER----------LITHEKLAF-MTEKSAMTM-DYCNG--DET--SP-SQRSYSVLR--SKFDAWLMEQAEEAGAQLIT 127 (428)
T ss_pred CCCE----------EEEEEEEEE-ECCCCCEEC-CCCCC--CCC--CC-CCCCEEEEH--HHHHHHHHHHHHHCCCEEEC
T ss_conf 8624----------789868999-868984556-77787--756--68-876189899--99999999999980988986
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 3156520001344301246898058708995067247415765
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
++.+++|+.+ +|+|+|+.+ +|+ .|+||.||+|-|=-
T Consensus 128 g~~V~~li~~-~GrVvGV~~----~G~--~i~A~vVI~AdGv~ 163 (428)
T PRK10157 128 GIRVDNLVQR-DGKVVGVEA----DGD--VIEAKTVILADGVN 163 (428)
T ss_pred CCEEEEEEEE-CCEEEEEEC----CCC--EEEEEEEEEECCCH
T ss_conf 8581001434-897999975----895--89871799944721
No 61
>PRK06370 mercuric reductase; Validated
Probab=99.61 E-value=6e-15 Score=116.34 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=34.4
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 2310588989968999999999988982999986898
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
.++|||+|||+|.||+.||+.|++.|++|+||||..+
T Consensus 2 ~~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~~ 38 (459)
T PRK06370 2 AQRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGLL 38 (459)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8717589999888999999999968991999968997
No 62
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.61 E-value=3.3e-13 Score=105.00 Aligned_cols=99 Identities=26% Similarity=0.256 Sum_probs=57.3
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCC----CCHHHHHHHHHHH---CCC
Q ss_conf 310588989968999999999988982999986898852104116534251378999----9999999989984---588
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP----DSWQWHLYDTIKG---SDW 88 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~----Ds~~~~~~Dt~~~---g~~ 88 (611)
++|||||||+|+|||+|||+++|+|++|+||+|+. |..-.++|-|.. ++..++ .+|..-+...... -.|
T Consensus 1 mk~DvlVIGgGLAGl~aAl~~a~~G~~v~lvs~Gq---gaL~fsSGsiDl-Lg~~P~g~~v~~P~~a~~~L~~~~p~HPY 76 (425)
T PRK05329 1 MKFDVVVIGGGLAGLTCALALAEAGKRCAIVAKGQ---SALHFSSGSLDL-LGYLPDGQPVSDPFEALESLAQQAPEHPY 76 (425)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---CEEEEECCCHHH-CCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 98778999952999999999997799389992784---320021444222-13388998677989999987740768990
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -779999999999889999999986998132799
Q gi|254781043|r 89 -LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEA 121 (611)
Q Consensus 89 -l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~ 121 (611)
+.-.+.|+ +.....-..|++.|+++.-+.+
T Consensus 77 ~~vG~~~v~---~~~~~~~~ll~~~gl~l~g~~~ 107 (425)
T PRK05329 77 SKLGPDAVL---ELLQQFQALLEAAGLPLVGSVE 107 (425)
T ss_pred HHHCHHHHH---HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 330789999---9999999999971986437876
No 63
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.61 E-value=3.6e-13 Score=104.75 Aligned_cols=96 Identities=22% Similarity=0.228 Sum_probs=55.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC----CCCHHHHHHHHHHHC---CC-C
Q ss_conf 058898996899999999998898299998689885210411653425137899----999999999899845---88-7
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT----PDSWQWHLYDTIKGS---DW-L 89 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~----~Ds~~~~~~Dt~~~g---~~-l 89 (611)
|||||||+|+|||+|||+++|+|++|.||+|+. |.--.++|-|.. ++..+ -++|..-+....... .| +
T Consensus 1 fDviVIGgGLAGl~aai~~a~~G~~~~lvs~Gq---saL~fsSGsiDl-Lg~~P~g~~v~~P~~ai~~L~~~~p~HPY~~ 76 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ---SALHFSSGSLDL-LSRLPDGQAVEQPMDALEALAQQAPEHPYSK 76 (419)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---CCCCCCCCCHHH-HCCCCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 978999961999999999997799589993783---302123535765-0359998977798999999885376989003
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7999999999988999999998699813279
Q gi|254781043|r 90 GDVDAIQYLAMEAPQSVYELEHYGVPFSRNE 120 (611)
Q Consensus 90 ~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~ 120 (611)
.-.+.|+ +.....-+.|++.|+++.-+.
T Consensus 77 iG~~~V~---~~~~~~~~ll~~~gl~l~g~~ 104 (419)
T TIGR03378 77 LGKTKVL---ALLQWFERLLKAQGLPLVGQS 104 (419)
T ss_pred HCHHHHH---HHHHHHHHHHHHCCCCCCCCC
T ss_conf 1789999---999999999997498644787
No 64
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.60 E-value=6e-14 Score=109.80 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=103.7
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH----HCCCCEEEECCCCCCCCHHHHHHH-------
Q ss_conf 332310588989968999999999988982999986898852104----116534251378999999999998-------
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV----AAQGGIAASLANMTPDSWQWHLYD------- 81 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~----~A~GGi~a~~~~~~~Ds~~~~~~D------- 81 (611)
.|.++|||||||||+-|+.+|..|+-+|++|+||||.....|.|. +..||+-- +.+. | +. .+.+
T Consensus 2 ~~~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsrSskLiHGGlRY-Le~~--~-~~-lV~Esl~ER~~ 76 (503)
T PRK12266 2 TMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSASTKLIHGGLRY-LEHY--E-FR-LVREALAEREV 76 (503)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECHHH-HHCC--C-HH-HHHHHHHHHHH
T ss_conf 867747989999778899999999867996999936875683347754475115777-7328--4-89-99999999999
Q ss_pred HHHHCCCCCCHHHH----------HHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEE-EEC
Q ss_conf 99845887799999----------9999988999999998-69981327998551001464114567876564079-866
Q gi|254781043|r 82 TIKGSDWLGDVDAI----------QYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTC-AAA 149 (611)
Q Consensus 82 t~~~g~~l~d~~lv----------~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~-~~~ 149 (611)
.++....++.|--. ..++.-+-..+++|-. ..+|-.+ .+....+..... .. ......+ |..
T Consensus 77 L~~~APhlv~pl~f~~P~~~~~~p~~~~~~Gl~lYD~la~~~~~~~~~----~l~~~~~~~~~p-L~--~~l~~~~~Y~D 149 (503)
T PRK12266 77 LLRMAPHIIWPMRFVLPHRPHLRPAWMIRLGLFLYDHLGKRKSLPGSR----GLDLRRFPAGSP-LK--PEITRGFEYSD 149 (503)
T ss_pred HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE----EEEHHHCCCCCC-CC--HHCCEEEEEEE
T ss_conf 998588656322257745777640799987899998753756678511----321654113376-55--42366899963
Q ss_pred CC-CCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 65-426678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 150 DR-TGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 150 d~-tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.. .-.-++-.+...+.+.|..+++.+.++++..+ +| +.++.+.|..+|+.+.|+||.||-|||-+.
T Consensus 150 ~q~dDaRL~l~~~~~A~~~GA~v~ny~~v~~~~~~-~~-~~~v~~~D~~tg~~~~v~ak~VVNAtGpW~ 216 (503)
T PRK12266 150 CWVDDARLVVLNARDAAERGAEILTRTRVVSARRE-GG-LWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (503)
T ss_pred EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEC-CC-EEEEEEEECCCCCEEEEEECEEEECCCCCH
T ss_conf 37581899999999998668766024237889972-98-899999986899789999277998767107
No 65
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=99.60 E-value=1.1e-13 Score=108.07 Aligned_cols=182 Identities=19% Similarity=0.175 Sum_probs=105.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHH-------HHHHHHHHCCCC--
Q ss_conf 58898996899999999998898299998689885210411653425137899999999-------999899845887--
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW-------HLYDTIKGSDWL-- 89 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~-------~~~Dt~~~g~~l-- 89 (611)
||+|||+|++|+++|+.++++|.+|+||||..+..+.|..++|.+.............. .+.+..+....-
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~gaS~~~~g~i~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARLALESRDLWRELIEELGIDCD 80 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999927999999999997899599994999887504240261645757786189999989999999999875598756
Q ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CC--CCCHHH
Q ss_conf ----------79999999999889999999986998132799855100146411456787656407986-66--542667
Q gi|254781043|r 90 ----------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-AD--RTGHAI 156 (611)
Q Consensus 90 ----------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d--~tG~~i 156 (611)
.+++.. +...+.++.+.++|+++..-+.-.+.. .++.-. ..+....+. .+ -....+
T Consensus 81 ~~~~g~l~~~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~------~~~~~a~~~~~~~~i~p~~~ 149 (309)
T pfam01266 81 FRRTGVLVLARDEAEL----DALRRLAAALRALGLPVELLDAEELRE-LEPGLS------PGIRGGLFYPDGGHVDPARL 149 (309)
T ss_pred EEECCEEEEECCHHHH----HHHHHHHHHHHHCCCCEEEECHHHHHH-HCCCCC------CCCEEEEEECCCCEECCHHH
T ss_conf 4764689994698999----999999999997399659946888776-466567------76148999757837751243
Q ss_pred HHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 899999987312303113156520001344301246898058708995067247415765654
Q gi|254781043|r 157 LHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 157 ~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
+..|.+.+++.|++++.++.++++..++ +++. + ...+|+ |+|+.||+|||.++.-
T Consensus 150 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~-v---~t~~g~---i~a~~VV~a~G~~s~~ 204 (309)
T pfam01266 150 LRALARAAEALGVEILEGTEVTGLEREG-GGVT-V---ETADGE---IRADKVVNAAGAWSDE 204 (309)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEE-E---EECCCE---ECCCEEEECCCHHHHH
T ss_conf 6799999987796999176899999989-9999-9---989970---8589999977742688
No 66
>PRK10015 hypothetical protein; Provisional
Probab=99.60 E-value=7.7e-15 Score=115.64 Aligned_cols=163 Identities=23% Similarity=0.275 Sum_probs=93.1
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
.|.+|||||||+|.||++||+.++++|++|+||||+...+++-.. ||+ + .+...+..+.| +.. +.
T Consensus 2 ~~e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~s--Ggv---l---~~~~le~liP~------~~~-~a 66 (429)
T PRK10015 2 SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMT--GGR---L---YAHTLEAIIPG------FAA-SA 66 (429)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC--CCE---E---CHHHHHHHCCC------CCC-CC
T ss_conf 976158899996889999999998779919999678879985512--637---4---16278886889------644-79
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
.++..+. +-.+-| .++++.+.. +|........ +...|.--+ ..+-+.|.+++.+.|++++.
T Consensus 67 P~er~V~----------~~~~~~-l~~~~~~~i-~~~~~~~~~~-----~~~~y~v~R--~~fD~WLa~~Ae~aGa~i~~ 127 (429)
T PRK10015 67 PVERKVT----------REKISF-LTEESAVTL-DFHREQPDVP-----QHASYTVLR--NRLDPWLMEQAEQAGAQFIP 127 (429)
T ss_pred CCCEEEE----------EEEEEE-ECCCCCEEC-CCCCCCCCCC-----CCCCEEEEH--HHHHHHHHHHHHHCCCEEEC
T ss_conf 8521589----------878999-878980666-7656786766-----778659899--99999999999975999977
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 31565200013443012468980587089950672474157656
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+.+.+|+.+ +|+|+|+.+ |+ ..++|+.||+|-|=-+
T Consensus 128 g~~v~~l~~e-~g~V~GV~t-----g~-~~l~A~vVI~AdGvns 164 (429)
T PRK10015 128 GVRVDALVRE-GNKVTGVQA-----GD-DILEANVVILADGVNS 164 (429)
T ss_pred CCEEEEEEEE-CCEEEEEEC-----CC-CEEEEEEEEEECCCCH
T ss_conf 9589999962-998999987-----98-2688658998156227
No 67
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.59 E-value=9.9e-14 Score=108.39 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=76.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
|||+|||+|.||+.||+.|++.|++|+||||..+ |+++.-.| |-|...-.
T Consensus 2 ~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~~--GGtC~n~G----------------------------CiPsK~Li 51 (467)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGV--GGAAVLTD----------------------------CVPSKTLI 51 (467)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--CCEEECCC----------------------------HHHHHHHH
T ss_conf 8199987488999999999978795999967997--84676778----------------------------36679999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf 99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA 177 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~ 177 (611)
..-+....+.....+|+.+.... -.+... .. ..|.- ..-......+..++.+.||+++..+--
T Consensus 52 ~~a~~~~~~~~~~~~G~~~~~~~-~~~d~~----~~--------~~r~~----~~~~~~~~~~~~~l~~~gv~~i~G~a~ 114 (467)
T PRK07845 52 ASAEVRTELRRAADLGVRFDLED-AKVDLP----QV--------NARVK----RLARAQSADIRAQLERAGVRVIAGRGR 114 (467)
T ss_pred HHHHHHHHHHHHHHCCEECCCCC-CCCCHH----HH--------HHHHH----HHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 99999999976352580447875-550699----99--------99999----999986666999987579689973899
Q ss_pred E-EEE-ECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 5-200-0134430124689805870899506724741576565
Q gi|254781043|r 178 L-DLI-INSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 178 ~-~Li-~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+ +-- .....+| .....+|.-..|.|+.+|||||.-.+
T Consensus 115 f~d~~~~~~~~~V----~v~~~~g~~~~i~a~~iIIATGs~P~ 153 (467)
T PRK07845 115 LDDDTPGLGPHRV----KVTTADGTEEELEADVVLIATGASPR 153 (467)
T ss_pred EECCCCCCCCCEE----EEEECCCCEEEEEECEEEECCCCCCC
T ss_conf 9206656778779----99935897589992969995899877
No 68
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.58 E-value=9.3e-14 Score=108.56 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=104.9
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH----HCCCCEEEECCCCCCCCH-HHHHH-H-HHHHCCC
Q ss_conf 310588989968999999999988982999986898852104----116534251378999999-99999-8-9984588
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV----AAQGGIAASLANMTPDSW-QWHLY-D-TIKGSDW 88 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~----~A~GGi~a~~~~~~~Ds~-~~~~~-D-t~~~g~~ 88 (611)
++|||||||||+.|..+|..|+-+|++|+||||.....|.|. +-.||+.- +.+.+...+ +...+ . .++...+
T Consensus 5 e~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsrSskLiHGGlRY-Le~~~~~lV~e~l~ER~~l~~~APh 83 (503)
T PRK13369 5 EDYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRY-LEYYEFRLVREALIEREVLLAAAPH 83 (503)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH-HHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 837889999678889999999968994999826875584447642265341665-4206699999999999999984834
Q ss_pred CCCHHH----------HHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECC--CCCHH
Q ss_conf 779999----------99999988999999998-699813279985510014641145678765640798666--54266
Q gi|254781043|r 89 LGDVDA----------IQYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAAD--RTGHA 155 (611)
Q Consensus 89 l~d~~l----------v~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d--~tG~~ 155 (611)
++.+-- ...+..-+-..+++|-. -+++-.+.-+-......++ .. ......+...| -...-
T Consensus 84 lv~pl~~l~P~~~~~~~~~~~~~Gl~lYd~la~~~~~~~~~~~~~~~~~~~~p--l~-----~~l~~~~~y~D~~~ddaR 156 (503)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKKLPGTRTLDLRRDPEGAP--LK-----PPYRKGFEYSDCWVDDAR 156 (503)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCC--CC-----HHCCEEEEEECCCCCHHH
T ss_conf 12447269996077555799997899998633866788410017656111067--40-----535569999666265799
Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 78999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 156 ILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 156 i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
++-.+...+.+.|..+++.+.++.+..+ |.+.++.+.|..+|+.+.|+||.||-|||-+.
T Consensus 157 l~~~~~~~A~~~GA~i~ny~~V~~~~~~--g~~~~v~~~d~~tg~~~~v~ak~VVNAtGpW~ 216 (503)
T PRK13369 157 LVVLNALDAAERGATILTRTRCVSARRE--GGLWRLETRNSDTGETRTFRARALVNAAGPWV 216 (503)
T ss_pred HHHHHHHHHHHCCCHHHHCCEEEEEEEE--CCEEEEEEEECCCCCEEEEEEEEEEECCCCCH
T ss_conf 9999999999878523307368877862--64899999987899589998538998667238
No 69
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.57 E-value=2e-13 Score=106.39 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=98.9
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 32310588989968999999999988--9829999868988521041165342513789999999999989984588779
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
-|.++||+|||+|++||++|+.++++ |.+|+|||+..+..|.|.- .||+..... .+ ... ..+- . -
T Consensus 21 ~d~~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG~GASGR-NgG~~~~~~---~~-~~~----l~~~-~---G 87 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGR-NGGCMLTWS---TK-FFT----LKRL-F---G 87 (460)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCC---CC-HHH----HHHH-H---C
T ss_conf 99755199999439999999999974899988999489615655665-445156777---64-478----9987-5---8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHCCCCCCCCCCCCEEEECC-----------------CCCCCCCCC--------CCCC
Q ss_conf 999999999889999999----98699813279985510014-----------------641145678--------7656
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYEL----EHYGVPFSRNEAGKIYQRPF-----------------GGHMQNYGE--------GPPV 142 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~L----e~~Gv~f~r~~~G~~~~~~~-----------------gg~~~~~~~--------g~~~ 142 (611)
.+....+.+.+.+.++++ ++.|+..+-...|.+..... |.+...... +...
T Consensus 88 ~~~a~~l~~~~~~a~~~v~~~i~~~gIdcd~~~~G~l~~A~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~gs~~ 167 (460)
T TIGR03329 88 EAEAARLVKASEQAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSAR 167 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHCCCH
T ss_conf 99999999999999999999888729885522078899972999999999999999975994005647989998869610
Q ss_pred CE-EEEEC---CCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 40-79866---65426678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 143 QR-TCAAA---DRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 143 ~R-~~~~~---d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+ .++.. --.-..++..|.+.+++.|++|+++|+++++ .+ |+.. + .....| .|+|+.||+||+||.
T Consensus 168 ~~~g~~~~~~~~~~P~kl~~gLa~~a~~~Gv~i~e~t~V~~i-~~--g~~~--~-v~T~~G---~I~A~~VV~ATnay~ 237 (460)
T TIGR03329 168 HLEGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGL-EE--GQPA--V-VRTPDG---QVTADKVVLALNAWM 237 (460)
T ss_pred HCCEEEECCCCEECHHHHHHHHHHHHHHCCCEEECCEEEEEE-EC--CCCE--E-EEECCC---EEEEEEEEEEECCCC
T ss_conf 012497068625769999999999987348807746057998-55--9954--9-992797---899706999715553
No 70
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.57 E-value=1e-13 Score=108.35 Aligned_cols=140 Identities=30% Similarity=0.383 Sum_probs=102.7
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
+.||+|||+|.|||+||..++++|+||+++|+....+|+.+. ||+ +-+.=.++
T Consensus 25 e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~Wg--GGm-------------------------lf~~iVv~ 77 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWG--GGM-------------------------LFNKIVVQ 77 (257)
T ss_pred HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--HHH-------------------------HCCHHHHC
T ss_conf 068899888827999999998689659999713468886313--000-------------------------13345400
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
+ ++-..|+++|+++....+|.+. .| ....+..|..++.+.|+++++-+.
T Consensus 78 ----~--~a~~iLde~gi~y~~~~~g~~v-----------------------~d--~~~~~s~L~~~a~~aGakifn~~~ 126 (257)
T PRK04176 78 ----E--EADEILDEFGIRYKEVEDGLYV-----------------------AD--SVEAAAKLAAGAIDAGAKIFNGVS 126 (257)
T ss_pred ----C--HHHHHHHHCCCCCEECCCCEEE-----------------------EC--HHHHHHHHHHHHHHCCCEEEECCE
T ss_conf ----5--3799999849973335896399-----------------------50--899999999999747988982304
Q ss_pred EEEEEECCCCCCEEEEEEEEC-------CCEEEEECCCCEEEECCC
Q ss_conf 652000134430124689805-------870899506724741576
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLE-------TGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~-------~G~~~~i~AkaVILATGG 215 (611)
+.|||+.+++||.|++. |.. .=.+..|.||.||-|||=
T Consensus 127 VEDli~r~~~rV~GvV~-NWt~V~~~glhvDP~~i~ak~VvdaTGH 171 (257)
T PRK04176 127 VEDVIIREDGRVAGVVI-NWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred EEEEEEECCCCEEEEEE-CCHHHHHHCCCCCCCEECCCEEEECCCC
T ss_conf 42156612881789996-2577564035558520113689988898
No 71
>KOG0042 consensus
Probab=99.56 E-value=3e-14 Score=111.80 Aligned_cols=191 Identities=20% Similarity=0.234 Sum_probs=108.6
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CHHCCCCEEE---ECCCCCCCCHHHHH--------
Q ss_conf 23105889899689999999999889829999868988521----0411653425---13789999999999--------
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH----TVAAQGGIAA---SLANMTPDSWQWHL-------- 79 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~----s~~A~GGi~a---~~~~~~~Ds~~~~~-------- 79 (611)
.++|||||||||..|--||+-|+-+|++|.|||+.....|. |-+..||+.- ++-+. +++.+-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~l---D~~qyrlV~eaL~E 141 (680)
T KOG0042 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNL---DYEQYRLVKEALNE 141 (680)
T ss_pred CCCCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_conf 775537998888667541212011452147774266457765540254404599999999864---89999999999998
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH----CCCCCCCCCCCCEEEEC------------CCCCCCCCCCCCCC
Q ss_conf -98998458877999999999988999999998----69981327998551001------------46411456787656
Q gi|254781043|r 80 -YDTIKGSDWLGDVDAIQYLAMEAPQSVYELEH----YGVPFSRNEAGKIYQRP------------FGGHMQNYGEGPPV 142 (611)
Q Consensus 80 -~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~~~------------~gg~~~~~~~g~~~ 142 (611)
..+++...+||.+=.+- -....|..- .|+.+----.|...+++ |+ +.... ...-
T Consensus 142 R~~lle~APhLs~~lPIm------lPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fP-mL~~~--~L~G 212 (680)
T KOG0042 142 RANLLEIAPHLSQPLPIM------LPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFP-MLRKD--NLKG 212 (680)
T ss_pred HHHHHHCCCCCCCCCCEE------EEHHHHHHHHHEEECCEEEEEECCCCCCCCCEEECHHHHHHHCC-CCCCC--CCEE
T ss_conf 887764173105786545------44366440023023103456412554355103423888998675-33535--7405
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 407986665426678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 143 QRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 143 ~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.-.+|-|-.+-.-+.-++.=.+.++|..+.++..+..||+|.+|+|.||.+.|..+|+.+.|+||.||-|||-|.
T Consensus 213 a~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042 213 AMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCC
T ss_conf 799951777237789999999986004554179898775278985510588874047378998789995887862
No 72
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.55 E-value=2.3e-13 Score=105.96 Aligned_cols=182 Identities=19% Similarity=0.234 Sum_probs=99.6
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHCCCCE-EEECCCCCCCCHH------HHHHHHHHH-C
Q ss_conf 31058898996899999999998898299998689885-2104116534-2513789999999------999989984-5
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR-SHTVAAQGGI-AASLANMTPDSWQ------WHLYDTIKG-S 86 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~-g~s~~A~GGi-~a~~~~~~~Ds~~------~~~~Dt~~~-g 86 (611)
|.|||+|||+|+.|+++|+.++++|.+|+||||..+.. ++|......+ ...... .++-.. ..+++.... +
T Consensus 2 ~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~~~~gss~g~~~~~r~~~~~-~~~~~~l~~~s~~~~~~l~~~~g 80 (377)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPPHQQGSSHGDTRIIRHAYGE-GPAYVPLVLRAQELWRELERETG 80 (377)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 50489999952999999999997899599992899886546676642066764567-87789999999999999998749
Q ss_pred C-------C--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECC---CCCH
Q ss_conf 8-------8--77999999999988999999998699813279985510014641145678765640798666---5426
Q gi|254781043|r 87 D-------W--LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAAD---RTGH 154 (611)
Q Consensus 87 ~-------~--l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d---~tG~ 154 (611)
. + +...+. +.....++..+++|++...-+...+. ..|++-.. .......+..+ -...
T Consensus 81 ~~~~~~~G~l~~a~~~~-----~~~~~~~~~~~~~G~~~e~l~~~e~~-~~~P~l~~-----~~~~~g~~~p~~G~v~p~ 149 (377)
T PRK11259 81 EPLFVQTGVLNLGPADS-----AFLANVARSARQHGLPHEVLDAAEIR-RRWPEFRV-----PDNYIALFEPDSGFLRPE 149 (377)
T ss_pred CCEEEEECCEEECCCHH-----HHHHHHHHHHHHCCCCCEEECHHHHH-HHCCCCCC-----CCCEEEEEECCCCEECHH
T ss_conf 75287507489738779-----99999999999769980995899999-86776578-----987799995898267499
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.++.+|.+.+++.|++++.++.++.+..++ ++|+ | ...+| .|.|+.||+|+|.++
T Consensus 150 ~~~~al~~~a~~~G~~i~~~~~V~~i~~~~-~~v~-V---~T~~G---~i~A~~VV~AaGaws 204 (377)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEHDD-DGVT-V---TTADG---TYSAKKLVVSAGTWV 204 (377)
T ss_pred HHHHHHHHHHHHCCCCEEECEEEEEEEECC-CEEE-E---EECCC---EEECCEEEECCCHHH
T ss_conf 999999999997499658134888678749-9899-9---80894---799797999756517
No 73
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.54 E-value=3.3e-14 Score=111.53 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=35.7
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 323105889899689999999999889829999868988
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
|..+|||+|||+|.||+.||+.|++.|++|+|+||..++
T Consensus 1 M~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~G 39 (464)
T PRK05976 1 MAKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKLG 39 (464)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 997188999997889999999999789929999789979
No 74
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.54 E-value=7.2e-14 Score=109.31 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=34.2
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 2310588989968999999999988982999986898
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
.++|||+|||+|.||+.||+.|++.|++|+|+||..+
T Consensus 2 ~~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~~ 38 (462)
T PRK06416 2 AFDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKL 38 (462)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8779989999888999999999968993999967997
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.54 E-value=1.5e-13 Score=107.22 Aligned_cols=52 Identities=31% Similarity=0.450 Sum_probs=43.9
Q ss_pred CCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCC
Q ss_conf 3441332310588989968999999999988982999986898852104116
Q gi|254781043|r 9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ 60 (611)
Q Consensus 9 ~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~ 60 (611)
-.|..+-+-|||||||+|.|||+||++|+..|++|+|++-....+|+.....
T Consensus 168 d~Yd~~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~ 219 (1026)
T TIGR01372 168 DTYDKVNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEA 219 (1026)
T ss_pred HHHCCEEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 3130342320478878896799999999647988999706765777556778
No 76
>KOG2403 consensus
Probab=99.53 E-value=4.2e-14 Score=110.84 Aligned_cols=411 Identities=6% Similarity=-0.242 Sum_probs=262.3
Q ss_pred CCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEE------------------CCCCCCCCCHHCCCCEEE
Q ss_conf 20005344133231058898996899999999998898299998------------------689885210411653425
Q gi|254781043|r 4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT------------------KVFPTRSHTVAAQGGIAA 65 (611)
Q Consensus 4 ~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lie------------------K~~~~~g~s~~A~GGi~a 65 (611)
+.+..-.+..+...++|...|+|+.+.....+.....+-+.-+. ++...+..+.+.++++++
T Consensus 45 ~~~~~~~~~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~s 124 (642)
T KOG2403 45 SDSIYAQVDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGS 124 (642)
T ss_pred CCCCEEEEEEECEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf 77520343000105899315333466666530673378873242566651364321244432677751455444400232
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCCCE
Q ss_conf 13789999999999989984588779999999999889999999986998132799855100146-41145678765640
Q gi|254781043|r 66 SLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFG-GHMQNYGEGPPVQR 144 (611)
Q Consensus 66 ~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~g-g~~~~~~~g~~~~R 144 (611)
.....++|.+..|+++..+.....+++.....+-+..+-.+.+..+.|.+|....+++.....+. ||+..........+
T Consensus 125 d~l~dqd~i~ym~~ea~~a~~el~~~g~~f~~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~ 204 (642)
T KOG2403 125 DWLGDQDAIHYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLR 204 (642)
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 34674324468774162347888734686565667757776541235676666666617886216660777666777740
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCC
Q ss_conf 79866654266789999998731230311315652000134430124689805870899506724741576565433421
Q gi|254781043|r 145 TCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSAT 224 (611)
Q Consensus 145 ~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t 224 (611)
. ...++.......+-... ....-..-..+.++... .+++.+.+..-...|..+.+.+++-+.+++|.+..+...+
T Consensus 205 ~---~~~~f~~yfa~dll~~~-g~~~~~va~~~~d~~i~-~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~ 279 (642)
T KOG2403 205 H---NTSFFVEYFALDLLMSQ-GECVGVIALNLEDGTIH-RFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGA 279 (642)
T ss_pred C---CHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCE-EEEEEEEEEEEECCCEEEEEECCCEEECCCCCEEEEECCC
T ss_conf 1---04568999999988741-68107999996226421-1134006999841662788732470673688747754257
Q ss_pred CCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHH
Q ss_conf 06401444887887513653333222328884422014304566557808983268612554076510047520111568
Q gi|254781043|r 225 SAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM 304 (611)
Q Consensus 225 ~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai 304 (611)
.-.+.+++...+--.+|+-. +...+.....+.+..++...+..+++|+.++.+....++.++.+...+
T Consensus 280 ~l~d~efvqfhpt~i~g~Gc------------liteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~ 347 (642)
T KOG2403 280 PLSDMEFVQFHPTGIYGAGC------------LITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIRE 347 (642)
T ss_pred CCCCCCEEEEEEECCCCCCE------------EEEECCCCCCCCEEECCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 87665303444322456562------------665304322550133365332300164301113345556555565574
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 89988178888888746886111798999998537999997643678654406752033100123421577158537788
Q gi|254781043|r 305 MMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSK 384 (611)
Q Consensus 305 ~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~ 384 (611)
-+++..+++-..-..+.+.-.-++++.-.....+.++..+......+|...++.+-+..++++++.++.+..++ +.+ +
T Consensus 348 grg~g~~kd~~~l~l~h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~-g~d-~ 425 (642)
T KOG2403 348 GRGVGPNKDHVYLQLSHLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREV-GQD-Q 425 (642)
T ss_pred HCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCC-C
T ss_conf 23667887865310114772442225788532056674147445665557774354476656786631662466-655-4
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8533227603402122033566430476432222223215677556654
Q gi|254781043|r 385 NPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI 433 (611)
Q Consensus 385 ~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~ 433 (611)
.----.++++||++.+|+..|++++..-+++..+-+++.........-.
T Consensus 426 vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~ 474 (642)
T KOG2403 426 VVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGD 474 (642)
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5534020167777763202111134566788778887777888518889
No 77
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=99.53 E-value=3.4e-13 Score=104.90 Aligned_cols=140 Identities=30% Similarity=0.381 Sum_probs=100.7
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
+.||+|||+|.|||+||..++++|+||+++|+....+|+.+. ||+. | ++=.++
T Consensus 17 e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~Wg--GGml--------------f-----------n~ivv~ 69 (229)
T pfam01946 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWG--GGML--------------F-----------SAMVVR 69 (229)
T ss_pred HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCC--------------C-----------CCEEEC
T ss_conf 268899887817999999998789859999645268886202--0122--------------5-----------633764
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
. ++-+.|+++|+++....+|.+. .| ....+..|..++.+.|+++++.+.
T Consensus 70 ~------~a~~iLde~gi~y~~~~~g~~v-----------------------~d--s~~~~s~L~s~a~~aGakifn~~~ 118 (229)
T pfam01946 70 K------PADEFLDEFGIRYEDEGDYVVV-----------------------AD--AAEFTSTLASKALQPGVKIFNATS 118 (229)
T ss_pred C------HHHHHHHHCCCCCEECCCCEEE-----------------------EC--HHHHHHHHHHHHHCCCCEEEECCE
T ss_conf 1------3899999749952764796699-----------------------44--999999999997678989982448
Q ss_pred EEEEEECCCCCCEEEEEEE---ECCC---EEEEECCCCEEEECCC
Q ss_conf 6520001344301246898---0587---0899506724741576
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQ---LETG---EIHRFSAKLVVLATGG 215 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~---~~~G---~~~~i~AkaVILATGG 215 (611)
+.||++.+ +||.|++.-- ...| .+..|.||.||-|||=
T Consensus 119 VEDli~r~-~rV~GvViNWt~V~~~g~hvDP~~i~ak~VvDaTGH 162 (229)
T pfam01946 119 VEDLIIRD-NRVAGVVTNWTLVEMAGLHMDPLTIRAKAVVDATGH 162 (229)
T ss_pred EEEEEEEC-CCEEEEEEEEEHHHHCCCCCCCCCCCCEEEEECCCC
T ss_conf 88899967-927999984114444367558421100179866889
No 78
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.52 E-value=2.9e-13 Score=105.37 Aligned_cols=186 Identities=21% Similarity=0.221 Sum_probs=104.6
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
++|||+|||||+.|+..|..|+-+|++|+|+||.....|.|..+++-|-.-+-+...+.+. .+.+.++. .
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~-lvrEal~E------r--- 80 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFS-LVREALAE------R--- 80 (532)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHH-HHHHHHHH------H---
T ss_conf 5777899898654699999998679849999547656766676345755416665306547-99999999------9---
Q ss_pred HHHHHHHHHHHHH---------------HHHCCCCCCCCCCC--------CEEEECCCCCCCCCCCCCCCCE-----EEE
Q ss_conf 9999988999999---------------99869981327998--------5510014641145678765640-----798
Q gi|254781043|r 96 QYLAMEAPQSVYE---------------LEHYGVPFSRNEAG--------KIYQRPFGGHMQNYGEGPPVQR-----TCA 147 (611)
Q Consensus 96 ~~~~~~a~~~i~~---------------Le~~Gv~f~r~~~G--------~~~~~~~gg~~~~~~~g~~~~R-----~~~ 147 (611)
+.+-+.+|..++- +...|+..--.-.| +....+.+ . ...+...+ ...
T Consensus 81 ~vL~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~---~--~~~P~l~~~~l~ga~~ 155 (532)
T COG0578 81 EVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEA---L--PLEPALKKDGLKGAFR 155 (532)
T ss_pred HHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCHHHH---H--HCCCCCCHHCCCCEEE
T ss_conf 9999758661136867586368865224788689999876251235874331165552---0--0286546200454199
Q ss_pred ECCCC--CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 66654--266789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 148 AADRT--GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 148 ~~d~t--G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
..|.. -.-++-.+...+.+.|.++++.+.++.|+.++ | |.|+.+.|..+|+.+.|+|+.||.|||-+..
T Consensus 156 y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 156 YPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred ECCCEECHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECC-C-EEEEEEEECCCCCEEEEECCEEEECCCCCHH
T ss_conf 706352468899999999996530123046153455408-7-7899997157882799883779989870189
No 79
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.52 E-value=1.1e-13 Score=108.05 Aligned_cols=35 Identities=46% Similarity=0.499 Sum_probs=33.4
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 10588989968999999999988982999986898
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
+|||+|||+|.||+.||+.|++.|++|+|+||..+
T Consensus 3 ~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~ 37 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL 37 (460)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 16989999778999999999969790999958998
No 80
>PRK06116 glutathione reductase; Validated
Probab=99.52 E-value=2.4e-14 Score=112.37 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=34.8
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 32310588989968999999999988982999986898
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
|..+|||+|||+|.||+.||+.|++.|.+|+|+||..+
T Consensus 1 Ms~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~~ 38 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKEL 38 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99748889999888999999999968796999937997
No 81
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.51 E-value=1.9e-13 Score=106.58 Aligned_cols=39 Identities=38% Similarity=0.630 Sum_probs=35.0
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 323105889899689999999999889829999868988
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
|..+|||+|||+|.||+.||+.|++.|++|+|||+....
T Consensus 1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~ 39 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNP 39 (475)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 996188999998889999999999789919999725776
No 82
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.51 E-value=1.9e-12 Score=99.94 Aligned_cols=197 Identities=20% Similarity=0.260 Sum_probs=99.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCC-EEEECCC---------------CCCCC--------
Q ss_conf 58898996899999999998898299998689885210411653-4251378---------------99999--------
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG-IAASLAN---------------MTPDS-------- 74 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GG-i~a~~~~---------------~~~Ds-------- 74 (611)
||+|||+|+.|+++|++++++|.+|+||||......+|.++.+| +++.... ..+|+
T Consensus 3 ~V~VIGaGivGlstA~~La~~G~~VtviDr~~~~~~~aS~gNaG~ls~~~~~p~~~p~~~~~~~~~l~~~~~pl~~~~~~ 82 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPRP 82 (410)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCC
T ss_conf 59998983999999999997899189996989987634830121136220456568304778888851889980417876
Q ss_pred -H---HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEC----------------CCCC
Q ss_conf -9---99999899845-88779999999999889999-9999869981327998551001----------------4641
Q gi|254781043|r 75 -W---QWHLYDTIKGS-DWLGDVDAIQYLAMEAPQSV-YELEHYGVPFSRNEAGKIYQRP----------------FGGH 132 (611)
Q Consensus 75 -~---~~~~~Dt~~~g-~~l~d~~lv~~~~~~a~~~i-~~Le~~Gv~f~r~~~G~~~~~~----------------~gg~ 132 (611)
+ .+..+ .++.. .+..+......++-.+.+.+ ++.++.|+.|.....|.++.-. ..|.
T Consensus 83 ~~~~~~w~~~-fl~~~~~~~~~~~~~~~la~~~~~~~~~l~~~~g~d~~~~~~G~L~~~~~~~~~~~~~~~~~~~~~~Gv 161 (410)
T PRK12409 83 SWHKYSWLAE-FLAHIPNYRANTIETVRLAIAAREHLFDIAEREGIDFDLERRGILHIYHDKADFDHAKRVNALLNEGGL 161 (410)
T ss_pred CHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 8677699999-997677889889999999999999999999975987420448789998488899999999999997699
Q ss_pred CC---------CCCC--CCCCCEEEEE-CCCCC--HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 14---------5678--7656407986-66542--667899999987312303113156520001344301246898058
Q gi|254781043|r 133 MQ---------NYGE--GPPVQRTCAA-ADRTG--HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLET 198 (611)
Q Consensus 133 ~~---------~~~~--g~~~~R~~~~-~d~tG--~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~ 198 (611)
.. .... ...+....|. .|.++ ..++.+|.+.+++.|++++.++.++++..++ +++...+.-...
T Consensus 162 ~~~~L~~~el~~leP~L~~~~~ggi~~p~d~~~dp~~~~~al~~~~~~~G~~~~~~~~V~~i~~~~-~~v~v~~~~~~~- 239 (410)
T PRK12409 162 ERRAVTPEEMRAIEPTLTGEYYGGFYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTDIKTDG-DRVVLTCQDSSQ- 239 (410)
T ss_pred CCEEECHHHHHHHCCCCCCEEEEEEEECCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEEEEECCCCC-
T ss_conf 819838999997566765305789981786063589999999999997799998785589999809-989999646423-
Q ss_pred CEEEEECCCCEEEECCCCCC
Q ss_conf 70899506724741576565
Q gi|254781043|r 199 GEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 199 G~~~~i~AkaVILATGG~~~ 218 (611)
+.-..+.|+.||+|+|-+++
T Consensus 240 ~~~~~~~ad~vViAaGawS~ 259 (410)
T PRK12409 240 GDSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CCCCEEEEEEEEECCCCCCH
T ss_conf 35525883049987666637
No 83
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.47 E-value=2.4e-13 Score=105.84 Aligned_cols=39 Identities=41% Similarity=0.529 Sum_probs=34.7
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 323105889899689999999999889829999868988
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
+.++|||+|||+|.||..||++|++.|++|+|+||....
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l 39 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39 (454)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 985154899897777999999999679977999306986
No 84
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.46 E-value=7.6e-13 Score=102.61 Aligned_cols=38 Identities=39% Similarity=0.573 Sum_probs=34.4
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 32310588989968999999999988982999986898
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
|-..|||+|||+|.||+.||+.|++.|++|+||||...
T Consensus 1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~~ 38 (467)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKYW 38 (467)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 98568789999788999999999978990999948996
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.44 E-value=2.6e-12 Score=99.11 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=97.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHCCCCEEEEC----CC-----------CCCC---------C
Q ss_conf 88989968999999999988982999986898-8521041165342513----78-----------9999---------9
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFP-TRSHTVAAQGGIAASL----AN-----------MTPD---------S 74 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~-~~g~s~~A~GGi~a~~----~~-----------~~~D---------s 74 (611)
|+|||+|+.|+++|+.++++|.+|+||||... ..+.|....|.++... .. ..++ .
T Consensus 3 VvIIGaGi~G~stA~~La~~G~~V~vler~~~~~~~~S~~naG~i~~~~~~p~~~pg~~~~~~~~l~~~~~pl~~~~~~~ 82 (416)
T PRK00711 3 VVVLGSGVVGVTSAWYLARAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDGD 82 (416)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCC
T ss_conf 99999449999999999968996899969999853135134600164213564576427888888627898706257769
Q ss_pred HHH--HHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCEEEE---------------------
Q ss_conf 999--9998998458---8779999999999889999999-986998132799855100---------------------
Q gi|254781043|r 75 WQW--HLYDTIKGSD---WLGDVDAIQYLAMEAPQSVYEL-EHYGVPFSRNEAGKIYQR--------------------- 127 (611)
Q Consensus 75 ~~~--~~~Dt~~~g~---~l~d~~lv~~~~~~a~~~i~~L-e~~Gv~f~r~~~G~~~~~--------------------- 127 (611)
+.. .....++... +....+....+++.+.+.++.| ++.|..|.-...|.+..-
T Consensus 83 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~la~~s~~~~~~l~~~~g~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~G~ 162 (416)
T PRK00711 83 PFQLRWMWQMLRNCTASRYAVNKGRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEAGV 162 (416)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 78879999999855887899999999999999899999999864997101527689996799999999999999998699
Q ss_pred ------------CCCCCCCCCCCCCCCCEEEEE-CCCC--CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEE
Q ss_conf ------------146411456787656407986-6654--2667899999987312303113156520001344301246
Q gi|254781043|r 128 ------------PFGGHMQNYGEGPPVQRTCAA-ADRT--GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVV 192 (611)
Q Consensus 128 ------------~~gg~~~~~~~g~~~~R~~~~-~d~t--G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav 192 (611)
.+++-.. ....+.-..|. .|.+ .+.++.+|.+.+++.|++++.++.++++..++ |+|.|+.
T Consensus 163 ~~e~l~~~e~~~~~P~l~~---~~~~~~Ga~~~p~d~~~d~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~V~ 238 (416)
T PRK00711 163 PYELLDRDELAAVEPALAG---VRHKLAGGLRLPNDETGDCQLFTQRLAALAEQLGVKFRFNTPVDGLLVEG-GRITGVQ 238 (416)
T ss_pred CEEEECHHHHHHHCCCCCC---CCCCEEEEEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC-CEEEEEE
T ss_conf 7399689999874651015---55547899996898706679999999999985388620023158999849-9899885
Q ss_pred EEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 89805870899506724741576565
Q gi|254781043|r 193 AWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 193 ~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
. ..| .|.|+.||+|+|.+++
T Consensus 239 t---~~g---~i~ad~vV~AaGaws~ 258 (416)
T PRK00711 239 T---GGG---VITADAYVVALGSYST 258 (416)
T ss_pred C---CCC---EEEEEEEEEECCHHHH
T ss_conf 3---895---5750169993374369
No 86
>PRK13748 putative mercuric reductase; Provisional
Probab=99.43 E-value=2e-12 Score=99.87 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=35.1
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 323105889899689999999999889829999868988
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
-+..|||+|||+|.||..||+.|++.|++|+||||..++
T Consensus 95 ~~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~lG 133 (561)
T PRK13748 95 NEGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIG 133 (561)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 899876899895889999999999789979999479968
No 87
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.2e-11 Score=90.08 Aligned_cols=114 Identities=28% Similarity=0.394 Sum_probs=72.0
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 310588989968999999999988982-9999868988521041165342513789999999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFK-TACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~-V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
+.|||+|||+|.|||+||+-++..+++ ++++++..+. +. +.... |
T Consensus 2 ~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~g-g~-----------~~~~~-~--------------------- 47 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQ-----------LTKTT-D--------------------- 47 (305)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CC-----------CCCCE-E---------------------
T ss_conf 42288998958899999999987589856999478758-86-----------34433-3---------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
++ .++|.. ++-.|..++..+.+++.+.++++..
T Consensus 48 ve-------------------------------nypg~~---------------~~~~g~~L~~~~~~~a~~~~~~~~~- 80 (305)
T COG0492 48 VE-------------------------------NYPGFP---------------GGILGPELMEQMKEQAEKFGVEIVE- 80 (305)
T ss_pred EC-------------------------------CCCCCC---------------CCCCHHHHHHHHHHHHHHCCEEEEE-
T ss_conf 35-------------------------------767986---------------7775089999999777634708888-
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 15652000134430124689805870899506724741576565
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
..+..+- .++. ...+...+|+ +.||+||+|||-..+
T Consensus 81 ~~v~~v~--~~~~---~F~v~t~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 81 DEVEKVE--LEGG---PFKVKTDKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred EEEEEEE--ECCC---EEEEEECCCE---EEEEEEEECCCCCCC
T ss_conf 9989986--0686---0999947974---986569996177656
No 88
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.41 E-value=1.3e-13 Score=107.54 Aligned_cols=149 Identities=26% Similarity=0.307 Sum_probs=87.2
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
++|||+|||+|.||++||+.++++|++|+|+||....+....++ +++ .+...+....+ .+.+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~-~~~-------~~~~l~~l~~~--------~~~~-i 64 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG-GGL-------SPRALEELIPD--------FDEE-I 64 (396)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCC-------CHHHHHHHCCC--------CHHH-H
T ss_conf 47889998978899999999985799299996578899987676-667-------87788774555--------2133-2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
...+.. ..|... ..+.... .. . ...+.-+ -..+.+.|.+++.+.|++++..+
T Consensus 65 ~~~v~~------------~~~~~~-~~~~~~~-----~~-------~-~~~y~v~--R~~fd~~La~~A~~aGae~~~~~ 116 (396)
T COG0644 65 ERKVTG------------ARIYFP-GEKVAIE-----VP-------V-GEGYIVD--RAKFDKWLAERAEEAGAELYPGT 116 (396)
T ss_pred EEEEEE------------EEEECC-CCEEEEE-----CC-------C-CCEEEEE--HHHHHHHHHHHHHHHCCEEEECC
T ss_conf 133202------------699715-7426874-----48-------8-8579988--89988999999998398998187
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 5652000134430124689805870899506724741576
Q gi|254781043|r 176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
.+.+++.++++.++++. .+. ..++||-||.|+|=
T Consensus 117 ~~~~~~~~~~~~~~~~~-----~~~-~e~~ak~vI~AdG~ 150 (396)
T COG0644 117 RVTGVIREDDGVVVGVR-----AGD-DEVRAKVVIDADGV 150 (396)
T ss_pred EEEEEEEECCCEEEEEE-----CCC-EEEECCEEEECCCC
T ss_conf 88999981781699995-----686-69961899988485
No 89
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.3e-12 Score=98.45 Aligned_cols=140 Identities=28% Similarity=0.381 Sum_probs=98.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
+-||+|||+|.|||+||..++++|++|+++|+....+|+.+. ||+ +-+.=.++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~--GGm-------------------------lf~~iVv~ 82 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG--GGM-------------------------LFNKIVVR 82 (262)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC--CCC-------------------------CCCCEEEC
T ss_conf 326799876850578999998679649999730146876334--433-------------------------35604442
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
-++-+.|++.|+++.-.++|.+. .| .......|..++.+.|+++++.+.
T Consensus 83 ------~~a~~iL~e~gI~ye~~e~g~~v-----------------------~d--s~e~~skl~~~a~~aGaki~n~~~ 131 (262)
T COG1635 83 ------EEADEILDEFGIRYEEEEDGYYV-----------------------AD--SAEFASKLAARALDAGAKIFNGVS 131 (262)
T ss_pred ------CHHHHHHHHHCCCCEECCCCEEE-----------------------EC--HHHHHHHHHHHHHHCCCEEEECCE
T ss_conf ------53899999819852445796698-----------------------32--799999999998730810242324
Q ss_pred EEEEEECCCCCCEEEEEEEEC----C---CEEEEECCCCEEEECCC
Q ss_conf 652000134430124689805----8---70899506724741576
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLE----T---GEIHRFSAKLVVLATGG 215 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~----~---G~~~~i~AkaVILATGG 215 (611)
+.|+|+.++-+|+|++. |.. . =.+..++||.||-|||=
T Consensus 132 veDvi~r~~~rVaGvVv-NWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 132 VEDVIVRDDPRVAGVVV-NWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred EEEEEEECCCCEEEEEE-ECCHHHHCCCCCCCCEEEEEEEEECCCC
T ss_conf 77899816994689998-2512220565427511247899967888
No 90
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.37 E-value=5.7e-12 Score=96.89 Aligned_cols=151 Identities=33% Similarity=0.409 Sum_probs=82.5
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 3231058898996899999999998898299998689--88521041165342513789999999999989984588779
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF--PTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~--~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
++..|||||||+|.|||-||++|++.|++++|++... +..=.|.-|-||++- +. ... --|.+ +|+
T Consensus 3 ~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~K--G~-----lvr-EidaL---gG~-- 69 (621)
T PRK05192 3 YPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK--GH-----LVR-EIDAL---GGE-- 69 (621)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCH--HH-----HHH-HHHHC---CCH--
T ss_conf 888798899897579999999999679967999658131158604520367216--57-----666-87753---689--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHH-CC
Q ss_conf 999999999889999999986998132799855100146411456787656--407986665426678999999873-12
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALK-NN 168 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~-~g 168 (611)
.-..++ .-|+.|.. .+...|+.+ +|. ..|+ ......+.+.+.. .+
T Consensus 70 ---mg~~aD----------~~~Iq~r~---------------LN~sKGpAv~~~Ra--Q~Dr--~~Y~~~~~~~l~~~~n 117 (621)
T PRK05192 70 ---MGKAAD----------KTGIQFRM---------------LNTSKGPAVRAPRA--QADR--KLYRAAMREILENQPN 117 (621)
T ss_pred ---HHHHHH----------HHHHHHHH---------------HCCCCCCCCCCHHH--HHHH--HHHHHHHHHHHHCCCC
T ss_conf ---999998----------87616876---------------15888830067398--8859--9999999999964999
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 303113156520001344301246898058708995067247415765
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
++++.. .|++|+++ +++|.||+. .+|. .|.|++|||+||=|
T Consensus 118 l~i~~~-~v~~l~~~-~~~v~GV~~---~~g~--~i~a~~vvlttGTF 158 (621)
T PRK05192 118 LTLFQG-EVEDLIVE-NDRVKGVVT---QDGL--EFRAKAVVLTTGTF 158 (621)
T ss_pred CEEEEE-EEEEEEEE-CCEEEEEEE---CCCE--EEEEEEEEEECCCC
T ss_conf 789981-45799987-999999996---6870--99852699831564
No 91
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.35 E-value=2.6e-12 Score=99.13 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=31.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 0588989968999999999988982999986898
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
..|+|||+|.||+.||+.|++.|++|+||||..+
T Consensus 1 ~~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~ 34 (458)
T PRK06912 1 SKLVIIGGGPAGYVAAITAAQNGKEVTLIDEADL 34 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9499990088999999999978595999958997
No 92
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.34 E-value=2.6e-11 Score=92.53 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=33.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 0588989968999999999988982999986898852
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
.+|+|||+|.|||+||+.|++.|++|+|+||.+..+|
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG 54 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGG 54 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCE
T ss_conf 9899999558899999999978998599953696982
No 93
>PRK02106 choline dehydrogenase; Validated
Probab=99.32 E-value=1.7e-10 Score=87.29 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=41.7
Q ss_pred HHHHH-HCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCC
Q ss_conf 99987-31230311315652000134430124689805870899506-72474157656
Q gi|254781043|r 161 YGQAL-KNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYG 217 (611)
Q Consensus 161 ~~~~~-~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~ 217 (611)
.+.+. +.+++++.++.|++++.| +++++||...+ .|..+.+.| |-||||+|.++
T Consensus 203 l~~a~~r~Nl~v~~~a~V~rI~~d-~~~a~GV~~~~--~~~~~~v~a~keVILsAGai~ 258 (555)
T PRK02106 203 LDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYER--GGGVETARARREVILSAGAIN 258 (555)
T ss_pred HHHHHCCCCEEEEECCEEEEEEEC-CCEEEEEEEEE--CCEEEEEEEEEEEEECCCCCC
T ss_conf 546504897399828789887535-98578789997--998999996137997574216
No 94
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=99.32 E-value=3.2e-13 Score=105.07 Aligned_cols=317 Identities=21% Similarity=0.222 Sum_probs=149.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 05889899689999999999889---829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G---~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
||++|||+|.|+..|||+|.|.| +||++|+.++++ +|+ +|=..-| |. ++ ++++.
T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~G--GTC--------VNVGCVP-SK--~l---lraa~------- 57 (494)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPLG--GTC--------VNVGCVP-SK--IL---LRAAE------- 57 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CEE--------EEECCCH-HH--HH---HHHHH-------
T ss_conf 91899827689999999998548871599996378977--615--------8523274-58--99---99998-------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHH--HHHHHHHHHHHCC-CEE
Q ss_conf 9999998899999999869981327998551001464114567876564079866654266--7899999987312-303
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHA--ILHTLYGQALKNN-AEF 171 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~--i~~~L~~~~~~~g-v~i 171 (611)
+..++++++ | .++++..... . ..... -++.+.+++++.. +++
T Consensus 58 ~~~~a~~~~------------~-----------f~g~~~~~~~--v----------~~~~ll~~~~~~V~eLR~eKY~~v 102 (494)
T TIGR02053 58 VAHYARKPP------------F-----------FVGLLAATVE--V----------DFEELLEQKREVVEELRKEKYEDV 102 (494)
T ss_pred HHHHHHCCC------------C-----------CCCCCCCCCC--C----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 876763477------------7-----------7775354344--2----------389999998899999877678999
Q ss_pred ECCCEEEEEEECCCCCCEEEE--EEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCC
Q ss_conf 113156520001344301246--898058708995067247415765654334210640144488788751365333322
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVV--AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEF 249 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav--~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf 249 (611)
+..+..+|+|. +..+-..-- =.+..+|.-..+..|.+|+|||--.+ -|+ =.|+.-+-++|--|+|-||
T Consensus 103 l~~y~~~~~~~-G~A~F~d~~~V~v~~~~GG~~~~~~k~~lIATGa~P~------~P~---IPGLke~~~~G~ylTs~~~ 172 (494)
T TIGR02053 103 LSSYDGVDLVR-GRARFKDPKTVKVDLAEGGREVVGAKRFLIATGARPA------VPP---IPGLKEADKAGRYLTSEEA 172 (494)
T ss_pred HHHCCCEEEEE-EEEEECCCCEEEEECCCCCCCHHHCCCEEEEECCCCC------CCC---CCCCCCHHHCCCEECCHHH
T ss_conf 85179867998-6799847878997278885004213866896467788------744---6780045336843213777
Q ss_pred CCC--CC--CCCC--CCEEECCCCCC---CCC-EEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC-CCCCC--
Q ss_conf 232--88--8442--20143045665---578-089832686125540765100475201115688998817-88888--
Q gi|254781043|r 250 VQF--HP--TGIY--GAGCLITEGAR---GEG-GYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG-RGVGK-- 316 (611)
Q Consensus 250 ~qf--hP--t~~~--~~~~l~~~~~r---g~G-~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g-~g~~~-- 316 (611)
+.- .| ..+. +.+.+=.|... -.| -..+=..-+||++++.|.-+. .+ +++.+. -|+.-
T Consensus 173 l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~---------~V-~~~l~~eeGi~~~~ 242 (494)
T TIGR02053 173 LELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISA---------AV-EEALAEEEGIEVVT 242 (494)
T ss_pred HCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHH---------HH-HHHHCCCCCEEEEE
T ss_conf 256879970468888652899999999985776140367998644646888999---------99-99841478779980
Q ss_pred -----------CCCEE--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-E--ECCCCCCCCCCCCCCCCEEEC
Q ss_conf -----------88746--8861117989999985379999976436786544067-5--203310012342157715853
Q gi|254781043|r 317 -----------SKDHI--HLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIP-V--IPTVHYNMGGIPTNYWGEVLD 380 (611)
Q Consensus 317 -----------~~~~v--~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~-v--~p~~hy~~GGi~vd~~g~v~~ 380 (611)
.++.+ .++-.+-+.+ ++. .+.+- .+|-.|..+++- . ..----..|||.||
T Consensus 243 ~~r~~~~v~~rngg~~~~~~e~~~~~~~-~eA-----d~lLV-ATGR~PN~~gL~GLe~~GVk~~~~G~I~Vd------- 308 (494)
T TIGR02053 243 SARQVKAVSVRNGGGKIVTVEKNGGKAE-VEA-----DELLV-ATGRRPNTDGLNGLEKAGVKLDERGGILVD------- 308 (494)
T ss_pred CCEEEEEEEECCCCEEEEEEECCCCCCE-EEH-----HHHHH-HHCCCCCCCCCCCHHHCCCEECCCCCEEEC-------
T ss_conf 4403554445279818999855898745-743-----11255-527875666677423458346688547872-------
Q ss_pred CCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 77888533227603402122033-5664304764322222232156775566542
Q gi|254781043|r 381 ANSKNPERFAPGLMAIGEAGCAS-VHGANRLGSNSLIDLVVFGRAAVIRASEMID 434 (611)
Q Consensus 381 ~~~~~~~t~i~GLyAaGe~a~~g-~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~ 434 (611)
+.++|+-|+.||||||- .+ +.||--|=.- +.--|.+|+.+|-..+.
T Consensus 309 ---e~lrTsnp~iYAAGDVt-~~rl~Garfle~v----AA~~G~vAA~NA~gg~~ 355 (494)
T TIGR02053 309 ---ERLRTSNPGIYAAGDVT-GGRLQGARFLEYV----AAKEGVVAAENALGGAN 355 (494)
T ss_pred ---CCCCCCCCCEEEEECEE-CCCCCCCHHHHHH----HHHCCCEEEECCCCCCC
T ss_conf ---62035877724620223-7874652357778----75058045201017988
No 95
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=99.31 E-value=5.6e-11 Score=90.38 Aligned_cols=183 Identities=18% Similarity=0.154 Sum_probs=103.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC--CCCHHHH-------HHHHHH---HCC
Q ss_conf 8898996899999999998898299998689885210411653425137899--9999999-------998998---458
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT--PDSWQWH-------LYDTIK---GSD 87 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~--~Ds~~~~-------~~Dt~~---~g~ 87 (611)
|+|||||+-||+-|++++++|.+|.|+++.+-.++++..+.|||-|...+.. +|..-.+ +.|... ..-
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~~t 80 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKELT 80 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97845318789999999974993899965860456778866433243266746767478999999997599999987317
Q ss_pred CC--------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 87--------------7999999999988999999998699813279985510014641145678765640798666542
Q gi|254781043|r 88 WL--------------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG 153 (611)
Q Consensus 88 ~l--------------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG 153 (611)
++ +++|.. +....-+|...-|+.+..-.. .-..+.++.-+.....+..+|--.|.. -
T Consensus 81 g~~~~y~~~G~l~vA~~~~d~~-----~l~~~~~~~~~~G~~~~~l~~-~~~r~~EP~L~~~~~~a~~~p~d~~v~---~ 151 (357)
T TIGR02352 81 GLDTGYRQCGTLVVAFDEDDVE-----KLRQLADLQSATGMELEWLSG-RALRRLEPYLSPGIRGAVYYPDDAHVD---P 151 (357)
T ss_pred CCCCEEECCCEEEEECCCCHHH-----HHHHHHHHHHHHCCEEEECCH-HHHHHHCCCCCCCCCEEEECCCCCCCC---C
T ss_conf 9951274052589407871168-----889999998752860465077-999984425242203345748652337---1
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 66789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+.++++|.+.+.+.|+++..++.+.++-... .+++++.. .+| .+.|..||+|+|-.++
T Consensus 152 r~l~~AL~~~~~~lGv~i~~~~~v~~~~~~~-~~~~~~~~---~~~---~~~ad~vV~A~G~wa~ 209 (357)
T TIGR02352 152 RELLKALVKALEKLGVEIIEEVEVQEIEARG-EKVTAVVT---SSG---DVQADQVVLAAGAWAG 209 (357)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCEEEEECCC-CEEEEECC---CCC---CEECCEEEEECCCCHH
T ss_conf 8999999999985694798625335643267-66988528---854---2655747993573334
No 96
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=99.31 E-value=2.6e-11 Score=92.58 Aligned_cols=147 Identities=30% Similarity=0.338 Sum_probs=80.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 588989968999999999988982999986--898852104116534251378999999999998998458877999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK--VFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK--~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
||+|||+|.||+-||+.|++.|++|+|+.. ..+..=.|.-+-||++ .. ....++-.-| +
T Consensus 1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~~ig~msCnpSiGG~g----kG------~LvrEidaLg-G-------- 61 (391)
T pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIA----KG------HLVREIDALG-G-------- 61 (391)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCC----CC------HHHHHHHHCC-C--------
T ss_conf 979999878999999999868996899973424315886565568753----04------3999998725-8--------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHH-CCCEEEC
Q ss_conf 9999889999999986998132799855100146411456787656--407986665426678999999873-1230311
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALK-NNAEFFI 173 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~ 173 (611)
....+-+.-|+.|.... ...|..+ +|. ..|+ ......+.+.+.. .+++++
T Consensus 62 -------~m~~~aD~s~Iq~r~LN---------------~skGpAv~a~R~--q~Dr--~~y~~~~~~~l~~~~nl~i~- 114 (391)
T pfam01134 62 -------LMGKAADKTGIQFRMLN---------------TSKGPAVRALRA--QVDR--DLYSKEMTETLENHPNLTLI- 114 (391)
T ss_pred -------HHHHHHHHHHHHHHHHC---------------CCCCCCCCCCHH--HHHH--HHHHHHHHHHHHCCCCCEEE-
T ss_conf -------99999999754565304---------------467876668589--9879--99999999999759993999-
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 31565200013443012468980587089950672474157656
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
+-.+.+|+.+ +++|.||+. .+|+ .|.|++||||||=|-
T Consensus 115 ~~eV~~l~~~-~~~v~GV~~---~~g~--~i~a~~vIltTGTFl 152 (391)
T pfam01134 115 QGEVTDLIPE-NGKVKGVVT---EDGE--EYKAKAVVIATGTFL 152 (391)
T ss_pred ECCCEEEECC-CCEEEEEEE---CCCC--EEECCEEEEECCCCC
T ss_conf 5464003026-995999993---7997--851445999315644
No 97
>PRK11728 hypothetical protein; Provisional
Probab=99.31 E-value=2e-10 Score=86.74 Aligned_cols=179 Identities=18% Similarity=0.205 Sum_probs=95.3
Q ss_pred EEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC-CCCCHHCCCCEEEECCCCCCCCHHHH--------HHHHHH
Q ss_conf 310588989968999999999988--9829999868988-52104116534251378999999999--------998998
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPT-RSHTVAAQGGIAASLANMTPDSWQWH--------LYDTIK 84 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~-~g~s~~A~GGi~a~~~~~~~Ds~~~~--------~~Dt~~ 84 (611)
|.|||+|||+|+.|++.|.++++. +.+|+|+||.+-. .+.|...+|-|-+-+. .+++|...- +++..+
T Consensus 1 m~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~-y~p~slka~l~~~g~~l~~~~~~ 79 (400)
T PRK11728 1 MMYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVY-YTPGSLKARFCRRGNEATKAFCD 79 (400)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 95309999967999999999995599983999968999756335324232156435-89999999999999999999999
Q ss_pred H--------CCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCC-
Q ss_conf 4--------5887---799999999998899999999869981327998551001464114567876564079866654-
Q gi|254781043|r 85 G--------SDWL---GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRT- 152 (611)
Q Consensus 85 ~--------g~~l---~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~t- 152 (611)
. |..+ .++++ . .-....+....+|++...-+ .+-....++. . .+ ....|+ +.|
T Consensus 80 ~~~i~~~~~GkliVA~~~~e~-~----~L~~l~~~~~~ngv~~~~l~-~~ei~~~eP~-v----~~---~~al~~-p~tg 144 (400)
T PRK11728 80 QHGIPYEVCGKLLVATSELEL-E----RMEALYERAAANGIEVERLD-AEELREREPN-I----RG---LGAIFV-PSTG 144 (400)
T ss_pred HCCCCCCCCCEEEEECCHHHH-H----HHHHHHHHHHHCCCCEEEEC-HHHHHHHCCC-C----CC---CCEEEC-CCCE
T ss_conf 859992116869997799999-9----99999999985698628967-9999986886-5----43---235976-8772
Q ss_pred ---CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf ---26678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 153 ---GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 153 ---G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
-+.++.+|.+.+++.|++++.++.++.+-..+ +.+. + ...+|. .|.|+.||-|+|.++
T Consensus 145 ivD~~~l~~al~~~a~~~G~~i~~~~~V~~i~~~~-~~~~---v-~t~~~~--~i~a~~vINaAGl~A 205 (400)
T PRK11728 145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGVV---V-RTSQGG--EFEARTLVNCAGLMS 205 (400)
T ss_pred EECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEC-CEEE---E-EECCCC--EEEEEEEEECCCHHH
T ss_conf 77899999999999997898999278898999979-9999---9-988998--899718998666528
No 98
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.31 E-value=2.8e-10 Score=85.83 Aligned_cols=178 Identities=15% Similarity=0.194 Sum_probs=90.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHH------HHHHHHHHCCC---
Q ss_conf 058898996899999999998898299998689885210411653425137899999999------99989984588---
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW------HLYDTIKGSDW--- 88 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~------~~~Dt~~~g~~--- 88 (611)
|||+|||+|+.|+++|+.++++|++|+||||..+..+.|....|.+ ...+....+.+.. ++.+.-...+.
T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~~gaS~~n~G~~-~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~ 79 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQV-WPTGQAPGPAWDRARRSREIWLELAAKAGIWVR 79 (365)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCEE-EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9299999329999999999978994999989999977457642046-015768489999999999999998873498979
Q ss_pred ------CC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEC-CC--CCHHHHH
Q ss_conf ------77-99999999998899999999869981327998551001464114567876564079866-65--4266789
Q gi|254781043|r 89 ------LG-DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAA-DR--TGHAILH 158 (611)
Q Consensus 89 ------l~-d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~-d~--tG~~i~~ 158 (611)
++ +++-... ..+..+.+...|++...-+.-... ..++.-.. ..+.-.+|.. +. .-..++.
T Consensus 80 ~~G~l~~a~~~~~~~~----l~~~~~~~~~~g~~~e~l~~~e~~-~~~P~l~~-----~~~~ga~~~p~~g~~~p~~~~~ 149 (365)
T TIGR03364 80 ENGSLHLARTEEELAV----LEEFAATREPAEYRVELLTPAEVA-AKFPALRL-----DGLRGGLHSPDELRVEPREAIP 149 (365)
T ss_pred ECCEEEEECCHHHHHH----HHHHHHHHHHCCCCEEEECHHHHH-HHCCCCCC-----CCCEEEEECCCCCEECHHHHHH
T ss_conf 4278999879899999----999999999769964997799999-86686667-----7536999949987899999999
Q ss_pred HHHHH-HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 99999-8731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 159 TLYGQ-ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 159 ~L~~~-~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.|.+. +++.|++++.++.++++ + .++ + ....| .|.|+.||+|+|.+..
T Consensus 150 ~l~~~~a~~~Gv~~~~~t~V~~i--~-~~~---V---~T~~G---~i~a~~VVvaaG~~~~ 198 (365)
T TIGR03364 150 ALAAYLAEQHGVEFHWNTAVTSV--E-TGT---V---RTSRG---DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEE--E-EEE---E---EECCC---EEEEEEEEECCCCHHH
T ss_conf 99999998579289931289962--0-148---9---97892---8997669996684055
No 99
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=99.30 E-value=1e-11 Score=95.29 Aligned_cols=202 Identities=24% Similarity=0.216 Sum_probs=103.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
|||||||+|.||++||..|+++|++|+||||....|---...+|+|... +.+....+-.. ..-|-|.-....
T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~-------~~~~~~~~~~d-~~~L~~~P~~~~ 72 (343)
T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPR-------VLEELVLPGPD-EYALKDIPKELI 72 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCH-------HHHHCCCCCCC-CCCCCCCCCHHH
T ss_conf 9389982774689999999956973889850450798860057766700-------13113678888-613014774345
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf 99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA 177 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~ 177 (611)
...+.|+.+-+.-|. +++....++.. .-. .+...+.-+| ..+=+-|.+++++.|++++.++.+
T Consensus 73 -----~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~-~~~~~~v~~R--~~fD~~L~~~A~~~G~~~~~~~~~ 135 (343)
T TIGR02032 73 -----VNEVRTLFNGARIIS--PNGDKVEIPIE-------ELA-FTEEAYVIDR--DAFDEFLAERAQEAGAELRLGTTV 135 (343)
T ss_pred -----HHHHHHEECCCEEEE--CCCCEEEECCH-------HHC-CCCEEEEEEC--HHHHHHHHHHHHHCCCEEEECCEE
T ss_conf -----420011001433880--78632210222-------112-4743789852--674189999997578067526376
Q ss_pred EEEEECCCCCCEEEEEEEECCC---EEEEECCCCEEEECCCCCCCCC-CCCC--CCE--ECCHHHHHHHHHCCCCC-CCC
Q ss_conf 5200013443012468980587---0899506724741576565433-4210--640--14448878875136533-332
Q gi|254781043|r 178 LDLIINSEGCCVGVVAWQLETG---EIHRFSAKLVVLATGGYGRAYF-SATS--AHT--CTGDGAGMVARAGLPLQ-DME 248 (611)
Q Consensus 178 ~~Li~d~dG~V~Gav~~~~~~G---~~~~i~AkaVILATGG~~~ly~-~~t~--~~~--~tGdG~~mA~~aGa~l~-~mE 248 (611)
++...+ | .+.+. .+++ .-..+.||.||-|.|-.+.+-+ .--+ |.. ..=.=+..|+++=.++. |.+
T Consensus 136 ~~~~~~-~---~~~~~--~~~~dd~~~~~~~a~~vigADG~~S~~~~~~lg~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 209 (343)
T TIGR02032 136 LDVEIE-D---KVVVE--VRGGDDESKGEVTAKIVIGADGARSIVAKKKLGSSATLRENKEKRELGVALRAEVEMPVEEE 209 (343)
T ss_pred EEEEEC-C---CEEEE--EECCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCC
T ss_conf 112761-8---36899--72686756604625589971688784321247877877777541202455467730676762
Q ss_pred CC
Q ss_conf 22
Q gi|254781043|r 249 FV 250 (611)
Q Consensus 249 f~ 250 (611)
+-
T Consensus 210 ~~ 211 (343)
T TIGR02032 210 VD 211 (343)
T ss_pred CC
T ss_conf 35
No 100
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.29 E-value=3.9e-11 Score=91.41 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=78.0
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|+.+|||+|||+|.||+.||+.|++.|++|+||||....+| ++.-.|.| | .
T Consensus 1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GG-tCln~GCI--------P--------------------s 51 (472)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG-VCLNVGCI--------P--------------------S 51 (472)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-EEEEECCH--------H--------------------H
T ss_conf 99778789999888999999999978996999963799765-61235803--------2--------------------2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
..-..+.+..+....+...|+.+.. -.+..... . .| .+..=..+...+.+.....||+++.
T Consensus 52 K~Ll~~a~~~~~~~~~~~~Gi~~~~---~~~d~~~~----~--------~~----~~~~v~~l~~~~~~~~~~~gV~~i~ 112 (472)
T PRK06467 52 KALLHVAKVIEEAKALAEHGIVFGE---PKIDIDKM----R--------AR----KEKVVKQLTGGLAGMAKGRKVTVVN 112 (472)
T ss_pred HHHHHHHHHHHHHHHHHHCCEECCC---CCCCHHHH----H--------HH----HHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 9999999999998676745772588---74279999----9--------99----9999999988999999877956971
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 31565200013443012468980587089950672474157656
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
..-- +++. .++ .....+|+...+.|+.+|+|||.-.
T Consensus 113 G~a~---f~~~-~~v----~v~~~~g~~~~l~a~~ivIATGs~p 148 (472)
T PRK06467 113 GLGK---FTGG-NTV----EVTGEDGKTEVIEFDNAIIAAGSRP 148 (472)
T ss_pred CCEE---ECCC-CEE----EEECCCCCEEEEEEEEEEECCCCCC
T ss_conf 5067---5489-803----6433888648998779999469966
No 101
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.27 E-value=1.7e-10 Score=87.20 Aligned_cols=189 Identities=17% Similarity=0.107 Sum_probs=103.6
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCC-----
Q ss_conf 3105889899689999999999889--829999868988521-04116534251378999999999998998458-----
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSH-TVAAQGGIAASLANMTPDSWQWHLYDTIKGSD----- 87 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~-s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~----- 87 (611)
++|||+|||+|+-|++.|.++++.. .+|+|+||......+ |..-+|-|-+.+....+ |.. .+.-+.|.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~-slk---a~l~~~g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPG-SLK---AKLCVAGNINEFA 77 (429)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCC-CHH---HHHHHHHHHHHHH
T ss_conf 832299989738989999999973889659999705765333456765344255448985-513---3999999999999
Q ss_pred --------CCCCHHHHH----HHHHHHHHHHHHHHHCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf --------877999999----9999889999999986998-132799855100146411456787656407986665426
Q gi|254781043|r 88 --------WLGDVDAIQ----YLAMEAPQSVYELEHYGVP-FSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGH 154 (611)
Q Consensus 88 --------~l~d~~lv~----~~~~~a~~~i~~Le~~Gv~-f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~ 154 (611)
+..-+.++- .-++.-....+.+...|++ +... |..-....++..... ..+. -...-.++-...
T Consensus 78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~l-d~~~i~~~eP~l~~~-~~aa--l~~p~~giV~~~ 153 (429)
T COG0579 78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEIL-DKEEIKELEPLLNEG-AVAA--LLVPSGGIVDPG 153 (429)
T ss_pred HHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEC-CHHHHHHHCCCCCCC-CEEE--EECCCCCEECHH
T ss_conf 999849861236808999782778999999998865798614426-999998629654436-5146--875777507689
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+...|.+.+.++|+++..++.|+++-.+.|| +...+..+|+.. |.||.||.|.|+++
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg----~~~~~~~~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDG----VFVLNTSNGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEECCC----EEEEEECCCCEE-EEEEEEEECCCHHH
T ss_conf 99999999999769789934836478992796----599983479678-99568998974517
No 102
>PRK06185 hypothetical protein; Provisional
Probab=99.25 E-value=4e-10 Score=84.82 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=89.3
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|.+++||+|||+|.|||++|+.++++|.+|+|+||.+-..-.. . |+. + .+.+.+ +++. -|+.
T Consensus 3 ~~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~~~~~---R-g~~--i---~p~tl~-----iL~~-lGl~--- 64 (409)
T PRK06185 3 MVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDF---R-GDT--V---HPSTLE-----LMDE-LGLL--- 64 (409)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---E-EEE--E---CHHHHH-----HHHH-CCCH---
T ss_conf 8878998999918899999999997799999991899987786---1-898--7---899999-----9998-7986---
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCE-EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-C
Q ss_conf 9999999889999999986998----132799855-100146411456787656407986665426678999999873-1
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVP----FSRNEAGKI-YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-N 167 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~----f~r~~~G~~-~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~ 167 (611)
+.+.+.+.. +....+|.. ....|. +. ...++-.... .-..+...|.+++.+ .
T Consensus 65 -------------~~l~~~~~~~~~~~~~~~~g~~~~~~d~~-~l-----~~~~~~~~~~---~q~~ll~~L~~~a~~~~ 122 (409)
T PRK06185 65 -------------ERFLELPHSKVRTLRFDIGGRTVTLADFS-RL-----PTRYPYIAMM---PQWDFLDFLAEKASRYP 122 (409)
T ss_pred -------------HHHHHCCCCCEEEEEEEECCEEEEEECCC-CC-----CCCCCCEEEC---CHHHHHHHHHHHHHCCC
T ss_conf -------------89973678733479999599389974300-16-----8888842770---18999999999985189
Q ss_pred CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 230311315652000134430124689805870899506724741576565
Q gi|254781043|r 168 NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 168 gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+++++.++.+++++.+ +++|+|+.+.. .+|+. .|+|+-||=|-|..+.
T Consensus 123 ~~~l~~~~~v~~l~~d-~~~v~gV~~~~-~dg~~-~i~adlvVGADG~~S~ 170 (409)
T PRK06185 123 TFTLRMGAEVTGLIEE-GGRVAGVRYRT-PDGEL-EIRADLTVGADGRHSR 170 (409)
T ss_pred CCEEEECCEEEEEEEE-CCCEEEEEEEC-CCCCE-EEEEEEEEECCCCCCH
T ss_conf 9599968888999995-99089999984-89858-9997299973899847
No 103
>KOG2415 consensus
Probab=99.24 E-value=3.9e-11 Score=91.42 Aligned_cols=168 Identities=23% Similarity=0.301 Sum_probs=104.5
Q ss_pred EECEEEECCCHHHHHHHHHHHH------CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1058898996899999999998------8982999986898852104116534251378999999999998998458877
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAE------KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLG 90 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e------~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~ 90 (611)
++||+|||+|.|||+|||++++ +.++|+|+||+...++|+.. | |++. +-.++..+-|....+.-++
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS--G---avie---p~aldEL~P~wke~~apl~ 147 (621)
T KOG2415 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS--G---AVIE---PGALDELLPDWKEDGAPLN 147 (621)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEC--C---EEEC---CCHHHHHCCCHHHCCCCCC
T ss_conf 405899888815678888899888760783689999612314771321--3---0506---5436665844121387445
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 99999999998899999999869981327998551001464114567876564079866654266789999998731230
Q gi|254781043|r 91 DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAE 170 (611)
Q Consensus 91 d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~ 170 (611)
-+-. -+.+..| ++++.+..- .. +.....|.-+-| =-++++.|-+++.+.||+
T Consensus 148 t~vT--------~d~~~fL---------t~~~~i~vP-v~--~pm~NhGNYvv~--------L~~~v~wLg~kAEe~GvE 199 (621)
T KOG2415 148 TPVT--------SDKFKFL---------TGKGRISVP-VP--SPMDNHGNYVVS--------LGQLVRWLGEKAEELGVE 199 (621)
T ss_pred CCCC--------CCCEEEE---------CCCCEEECC-CC--CCCCCCCCEEEE--------HHHHHHHHHHHHHHHCCE
T ss_conf 4222--------0304454---------367403068-77--621367867988--------899999987778861714
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEE---CCCE-------EEEECCCCEEEECCCCCCCC
Q ss_conf 31131565200013443012468980---5870-------89950672474157656543
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQL---ETGE-------IHRFSAKLVVLATGGYGRAY 220 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~---~~G~-------~~~i~AkaVILATGG~~~ly 220 (611)
|+-...+.++|.++||.|.|+..-|. .+|. -..|.||.+|+|-|--|.|-
T Consensus 200 iyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Ls 259 (621)
T KOG2415 200 IYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLS 259 (621)
T ss_pred ECCCCCHHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCHHH
T ss_conf 325620222367679967657604544167898500000231111305897021442458
No 104
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=99.24 E-value=8.2e-11 Score=89.30 Aligned_cols=120 Identities=23% Similarity=0.395 Sum_probs=83.4
Q ss_pred CCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf 00534413323105889899689999999999889--8299998689885210411653425137899999999999899
Q gi|254781043|r 6 NLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTI 83 (611)
Q Consensus 6 ~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~ 83 (611)
+++.=-.+++. ||+|+|+|.+||+||.=+|++| +||+|+|+.-..+|+++--+..|+...
T Consensus 12 ~~~~l~~~~e~--DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~V---------------- 73 (283)
T TIGR00292 12 YFEDLLDYAES--DVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIV---------------- 73 (283)
T ss_pred HHHHHHHHHHC--CEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEE----------------
T ss_conf 89988755010--667987897466899999842998069998511026898664222456136----------------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 84588779999999999889999999986998132799855100146411456787656407986665426678999999
Q gi|254781043|r 84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQ 163 (611)
Q Consensus 84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~ 163 (611)
++ .++=+.|+++|.++.-..|| ++++| .-+.+..|.-+
T Consensus 74 -----------v~------~pA~~~L~e~gI~~~d~~dg-----------------------~~Vad--s~e~~s~l~s~ 111 (283)
T TIGR00292 74 -----------VE------KPAKEILDEFGIRYEDEGDG-----------------------YVVAD--SAEFISTLASK 111 (283)
T ss_pred -----------EE------CHHHHHHHHCCCCEEECCCC-----------------------EEEEH--HHHHHHHHHHH
T ss_conf -----------51------40468888659813356885-----------------------48723--67689999999
Q ss_pred HHHCC-CEEECCCEEEEEEECCC
Q ss_conf 87312-30311315652000134
Q gi|254781043|r 164 ALKNN-AEFFIEYFALDLIINSE 185 (611)
Q Consensus 164 ~~~~g-v~i~~~~~~~~Li~d~d 185 (611)
+.+.| +++++-+.+.|||+-+|
T Consensus 112 a~~aGn~Ki~~~~~vEDl~~R~~ 134 (283)
T TIGR00292 112 ALQAGNAKIFNGVSVEDLILRDD 134 (283)
T ss_pred HHCCCCCEEEEEEEEEEEEECCC
T ss_conf 86588731433368887787688
No 105
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.24 E-value=2e-10 Score=86.72 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=35.3
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 3323105889899689999999999889829999868988
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
-|+.+|||+|||+|.||..||++|++.|++|+|||+..+.
T Consensus 37 ~~~~dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~ 76 (541)
T PTZ00052 37 DLTYDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPS 76 (541)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 5787799899997889999999999889909999424556
No 106
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.22 E-value=2e-10 Score=86.71 Aligned_cols=191 Identities=20% Similarity=0.136 Sum_probs=100.0
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHH---------HHHHHHHHH
Q ss_conf 23105889899689999999999889829999868988521041165342513789999999---------999989984
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ---------WHLYDTIKG 85 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~---------~~~~Dt~~~ 85 (611)
++++||+|||+|++|+++|+.+++.|.+|+|+|+..+..|+|..+.+++........ ++.. .++.+.-..
T Consensus 2 ~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~ 80 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPG-GELEVRPLADLSLALWRELSEE 80 (387)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 976439998986999999999997699199991798876766776777752423555-3033433799999999998875
Q ss_pred CCC---CCCHHHHHH-------HHHHHHHHHHHHHHCCCCC---CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 588---779999999-------9998899999999869981---327998551001464114567876564079866654
Q gi|254781043|r 86 SDW---LGDVDAIQY-------LAMEAPQSVYELEHYGVPF---SRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRT 152 (611)
Q Consensus 86 g~~---l~d~~lv~~-------~~~~a~~~i~~Le~~Gv~f---~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~t 152 (611)
... +.....+.. ...........+++++... +..+..... +.-+.. ....+...+.. +.-.
T Consensus 81 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~l~~~-~~~~~~~~~~~---~~~~ 154 (387)
T COG0665 81 LGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELE--PALGPD-FVCGGLFDPTG---GHLD 154 (387)
T ss_pred CCCCCCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--CCCCCC-CCEEEEECCCC---CEEC
T ss_conf 37664456624299884467432566899999998602100118887876637--333776-43345984888---3457
Q ss_pred CHHHHHHHHHHHHHCC-CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf 2667899999987312-3031131565200013443012468980587089950672474157656543
Q gi|254781043|r 153 GHAILHTLYGQALKNN-AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY 220 (611)
Q Consensus 153 G~~i~~~L~~~~~~~g-v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly 220 (611)
-..++..|.+.+.+.| ..+..++.++++..+ . ++.++. ...|+ |.|..||+|||.+....
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~v~~~~~~-~-~~~~v~---t~~g~---~~a~~vv~a~G~~~~~l 215 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVE---TDGGT---IEADKVVLAAGAWAGEL 215 (387)
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCEEEEEEC-C-CEEEEE---ECCCE---EECCEEEECCCCCHHHH
T ss_conf 89999999999997399189723524677614-7-358999---58970---98198999999643555
No 107
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.22 E-value=1.3e-09 Score=81.38 Aligned_cols=63 Identities=27% Similarity=0.346 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCC
Q ss_conf 266789999998731230311315652000134430124689805870899506724741576565433
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYF 221 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~ 221 (611)
=..++..+.+.+.+.|++++.+|.+.|+.++ ++.|.++. ...|+ .|.|+.||||.|--++-|.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~---~~~g~--~i~~~~vvlA~Grsg~dw~ 234 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVK---LTKGE--EIEADYVVLAPGRSGRDWF 234 (486)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CCCEEEEE---CCCCC--EEECCEEEECCCCCHHHHH
T ss_conf 6999999999998558289952078899815-87079999---25784--8732779990476467899
No 108
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=99.21 E-value=4.3e-10 Score=84.58 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=88.1
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
+|||+|||+|++||++|+.++++|.+|+|+||.+...... .|+. + .+-+.+ +++. -++
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g----~g~~--l---~p~~~~-----~L~~-lGl------- 58 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLP----RAGG--L---NQRTME-----LLRQ-AGL------- 58 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC----EEEE--E---CHHHHH-----HHHH-CCC-------
T ss_conf 9978999928899999999987799899992899988787----7999--8---989999-----9998-798-------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE-C-CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9999889999999986998132799855100-1-4641145678765640798666542667899999987312303113
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQR-P-FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~-~-~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
.+.+...+.+.... ..... . ............ ...+ .-. -..+.+.|.+.+.+.+++++.+
T Consensus 59 ---------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~-~~~--r~~l~~~L~~~~~~~~~~i~~~ 121 (349)
T pfam01494 59 ---------EDRILAEGAPHEGM---GLAFYNTSRRRADLDFLTSP--PRVT-VYP--QTELEPILREHAEARGAQVRFG 121 (349)
T ss_pred ---------HHHHHHCCCCCCEE---EEEECCCCCCEEECCCCCCC--CCEE-EEC--HHHHHHHHHHHHHHCCCEEEEC
T ss_conf ---------68998506875105---99983786422201455677--6268-862--9999999999998579989966
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 15652000134430124689805870899506724741576565
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+.++.+..+++ .|.. ...+..+|....|.|+-||-|-|..+.
T Consensus 122 ~~v~~~~~~~~-~v~~-~~~~~~~~~~~~i~adlvIgADG~~S~ 163 (349)
T pfam01494 122 TEVLSLEQDGD-GVTA-VVRDRRDGEEYTVRAKYLVGCDGGRSP 163 (349)
T ss_pred CEEEEEEECCC-CEEE-EEEECCCCCEEEEEEEEEECCCCCCCH
T ss_conf 17877520599-4379-998458995589997688415777648
No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=99.20 E-value=4.8e-11 Score=90.81 Aligned_cols=143 Identities=24% Similarity=0.308 Sum_probs=75.8
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
+|||+|||||.+|..|||+||+.|+||+||||...+ +++.--| ..| | .+-
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lG--GtCLN~G--------CIP-t-------------------KaL 50 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLG--GTCLNVG--------CIP-T-------------------KAL 50 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC--CEEECCC--------CCC-C-------------------HHH
T ss_conf 951899877877279999998649808999803568--7487277--------675-4-------------------788
Q ss_pred HHHHHHHHHHHH-HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH----HHHHHCCCEE
Q ss_conf 999988999999-99869981327998551001464114567876564079866654266789999----9987312303
Q gi|254781043|r 97 YLAMEAPQSVYE-LEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY----GQALKNNAEF 171 (611)
Q Consensus 97 ~~~~~a~~~i~~-Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~----~~~~~~gv~i 171 (611)
.-.-+-.+.+.. +++||+... + +-++.... . ..++ ..++..|. --+++.+|++
T Consensus 51 L~~ae~~~~~~h~a~~~Gi~~~-~-~v~~d~~~----~------~~rK----------~~VV~~L~~Gv~~LlkknKv~v 108 (481)
T TIGR01350 51 LHSAEVYDEIKHKAKDLGIEVE-N-NVSVDWEK----M------QERK----------NKVVKKLVGGVKGLLKKNKVTV 108 (481)
T ss_pred HHHHHHHHHHHHHHHHCCEEEC-C-EEEECHHH----H------HHHH----------HHHHHHHHHHHHHHHHHCCEEE
T ss_conf 7766789999988986780336-7-12675899----9------9998----------8987542467898863068059
Q ss_pred ECCCEEEEEEECCCCCCEEEEEEEECCCE-EEEECCCCEEEECCCCCCC
Q ss_conf 11315652000134430124689805870-8995067247415765654
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVVAWQLETGE-IHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~-~~~i~AkaVILATGG~~~l 219 (611)
+..+-- +.+ +++| ..+..+++ ...+.+|.+|||||.--+.
T Consensus 109 ~~G~a~---~~~-~~~v----~V~~~~~~~~~~~~~k~~iiATGS~P~~ 149 (481)
T TIGR01350 109 IKGEAK---FLD-PNTV----SVTGENGEEEETLEAKNIIIATGSRPRE 149 (481)
T ss_pred EEEEEE---EEC-CCEE----EEECCCCCEEEEEEEEEEEEECCCCCCC
T ss_conf 999999---985-8589----9835655311478740379933860343
No 110
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=99.20 E-value=3.8e-09 Score=78.42 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=87.2
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEECCCCCCCCHHHHHH--------HHH---HH
Q ss_conf 058898996899999999998898299998689-885210411653425137899999999999--------899---84
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASLANMTPDSWQWHLY--------DTI---KG 85 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~--------Dt~---~~ 85 (611)
-||+|||+|+||+++|.+++++|.+|+|+|+.. +..+.|.-.+|-+...+.. +|++...+. +.+ ..
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~--~~~~~sr~~~~a~~~a~~~~~~l~~ 334 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSK--DDNALSRFFRAAFLFARRFYDLEAL 334 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 71899893899999999999789968999479875655666731267402578--9976899999999999999998754
Q ss_pred CCCCCCHHH--HHHHH--HHHHHHHHHH-HHCCCC--CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 588779999--99999--9889999999-986998--1327998551001464114567876564079866654266789
Q gi|254781043|r 86 SDWLGDVDA--IQYLA--MEAPQSVYEL-EHYGVP--FSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILH 158 (611)
Q Consensus 86 g~~l~d~~l--v~~~~--~~a~~~i~~L-e~~Gv~--f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~ 158 (611)
+... +.+. +-.++ +...+.++.+ +..+.+ +... +..-. ....|... ...|..+|.. +.-.-..+++
T Consensus 335 ~~~~-~~~~~Gvl~la~~e~~~~r~~~~~~~~~~~~~~~~l-~~~ea-~~~~g~~~-~~~Gl~~p~~---G~v~P~~l~~ 407 (660)
T PRK01747 335 GVAF-DHDWCGVLQLAWDEKSAEKIAKMLEAGLPAELARAL-SAEEA-EALAGLPV-PCGGIFYPQG---GWLCPAELCR 407 (660)
T ss_pred CCCC-CCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHEEC-CHHHH-HHHHCCCC-CCCCEEECCC---CEECHHHHHH
T ss_conf 6864-414675699549868899999999746994330247-99999-77529987-7783782589---7756899999
Q ss_pred HHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 159 TLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 159 ~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+|.+. ...+|+++.++.+++|..++ +... ++..+++ .+.|+.||||+|.-..
T Consensus 408 aLl~~-a~~~i~~~~~~~V~~l~~~~-~~w~----l~~~~~~--~~~Ad~VVlA~G~~s~ 459 (660)
T PRK01747 408 ALLAA-AGQGLTIHFGHEVARLERVD-DQWQ----LDFAGGV--LASAPVVVLANGHDAT 459 (660)
T ss_pred HHHHH-CCCCEEEEECCEEEEEEECC-CEEE----EEECCCC--EEECCEEEECCCCCHH
T ss_conf 99986-47985999274478999749-8089----9968992--8614679990561011
No 111
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.20 E-value=1.4e-10 Score=87.80 Aligned_cols=39 Identities=33% Similarity=0.465 Sum_probs=35.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 105889899689999999999889829999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~ 55 (611)
+|||+|||+|.||+.||+.|++.|.+|+|+||.+..+|.
T Consensus 6 ~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~ 44 (465)
T PRK05249 6 DYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 44 (465)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE
T ss_conf 789899997789999999999789929999769997665
No 112
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=2.6e-11 Score=92.59 Aligned_cols=151 Identities=31% Similarity=0.431 Sum_probs=81.6
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 10588989968999999999988982999986898852--1041165342513789999999999989984588779999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS--HTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g--~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
+|||+|||+|-||+-||+++++.|++++|++...-.=| .|.-|-||++- +.... --|.+ | |+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~K--G~lvr------EIDAL--G-G~----- 67 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGK--GHLVR------EIDAL--G-GL----- 67 (621)
T ss_pred CCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCC--CEEEE------EEHHC--C-CH-----
T ss_conf 785699899842047777664369807999737774465035644577355--32677------52412--4-55-----
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEC
Q ss_conf 999999889999999986998132799855100146411456787656407986665426678999999873-1230311
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFI 173 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~ 173 (611)
.- . -.+.-|++|.. .+...|+.++-+-...|+ ......+.+.+.. .++.++.
T Consensus 68 Mg-------~---~~D~~~IQ~r~---------------LN~sKGPAVra~RaQaDk--~~Y~~~mk~~le~~~NL~l~q 120 (621)
T COG0445 68 MG-------K---AADKAGIQFRM---------------LNSSKGPAVRAPRAQADK--WLYRRAMKNELENQPNLHLLQ 120 (621)
T ss_pred HH-------H---HHHHCCCCHHH---------------CCCCCCCHHCCHHHHHHH--HHHHHHHHHHHHCCCCCEEHH
T ss_conf 77-------7---66650786533---------------367776210450654428--999999999985499955247
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 3156520001344301246898058708995067247415765
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
..+.+|+++++.+|+||+. .+|. .|+||+|||+||-|
T Consensus 121 -~~v~dli~e~~~~v~GV~t---~~G~--~~~a~aVVlTTGTF 157 (621)
T COG0445 121 -GEVEDLIVEEGQRVVGVVT---ADGP--EFHAKAVVLTTGTF 157 (621)
T ss_pred -HHHHHHHHCCCCEEEEEEE---CCCC--EEECCEEEEEECCC
T ss_conf -6667871337976899992---7878--51068799963344
No 113
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.17 E-value=5.7e-10 Score=83.79 Aligned_cols=113 Identities=14% Similarity=0.201 Sum_probs=70.0
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 588989968999999999988--982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
-|+|||+|.||++||+.+++. +.+|+++||.+...-+.+ ++. .+. +..+.+++
T Consensus 2 kvVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~~----~lp------------~~~------~~~~~~~~--- 56 (443)
T PRK09564 2 KIIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGAC----GLP------------YFV------GGFFDDPN--- 56 (443)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----HHH------------HHH------CCCCCCHH---
T ss_conf 69999960999999999981493999999948898777655----203------------444------05558989---
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
.+.....++..+.|++++.++.
T Consensus 57 ----------------------------------------------------------~~~~~~~~~~~~~gi~~~~~~~ 78 (443)
T PRK09564 57 ----------------------------------------------------------NMIARTPEEFIKSGIDVKTEHE 78 (443)
T ss_pred ----------------------------------------------------------HHHHHCHHHHHHCCCEEEECCE
T ss_conf ----------------------------------------------------------9874199999987999993888
Q ss_pred EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 652000134430124689805870899506724741576565
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
++.+-.++ ..+ ...+..+++.+......+|||||.-..
T Consensus 79 v~~id~~~-k~v---~~~~~~~~~~~~~~yD~LiiATGs~p~ 116 (443)
T PRK09564 79 VVKVDFKN-KTI---TVKNLKTGSIFNDTYDKLMIATGARPI 116 (443)
T ss_pred EEEEECCC-CEE---EEEECCCCCEEECCCCEEEEECCCCCC
T ss_conf 99997468-648---998468761661346789996167523
No 114
>PRK06126 hypothetical protein; Provisional
Probab=99.15 E-value=5.1e-09 Score=77.56 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=90.4
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
.++||||||+|.+||++|+.++++|.+|+||||.+.....+.+. +++ .-+.|. ++. -|+.
T Consensus 6 ~~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~rA~--~l~-------~rtlEi-l~~-----lGl~----- 65 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALELGRRGVDSILVERGDGTAFNPKAN--ATS-------ARSMEH-FRR-----LGIA----- 65 (545)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEE--EEC-------HHHHHH-HHH-----CCCH-----
T ss_conf 88998999949899999999998799999988999988788589--988-------899999-998-----7988-----
Q ss_pred HHHHHHHHHHHHHHHHCCCC--------CCCCCCCC-EEEECCCCCC------CCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 99999889999999986998--------13279985-5100146411------456787656407986665426678999
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVP--------FSRNEAGK-IYQRPFGGHM------QNYGEGPPVQRTCAAADRTGHAILHTL 160 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~--------f~r~~~G~-~~~~~~gg~~------~~~~~g~~~~R~~~~~d~tG~~i~~~L 160 (611)
+.+.+.|++ |...-.|. +....++... .........+...+. -.-..+...|
T Consensus 66 -----------~~l~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~Q~~lE~~L 132 (545)
T PRK06126 66 -----------DEVRSAGLPADYPTDIAYFTRLTGYELARITLPSAREAITPVGGPDGSWPSPELPHR--IPQKYVEPIL 132 (545)
T ss_pred -----------HHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE--CCHHHHHHHH
T ss_conf -----------999850787534663368861176688862167544334565445665566563356--2889999999
Q ss_pred HHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 9998731-23031131565200013443012468980587089950672474157656
Q gi|254781043|r 161 YGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 161 ~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+.+.+. ++++...+.++++-.+++| |. +...+..+|+...|+|+-||=|-|+-+
T Consensus 133 ~~~~~~~~gv~v~~g~~~~~~~qd~~g-V~-~~~~~~~~g~~~~i~A~ylVGaDGarS 188 (545)
T PRK06126 133 LEHAQAQPGVTLRYGHRLTDFEQDADG-VT-ATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred HHHHHHCCCCEEECCCEEEEEEECCCC-EE-EEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf 999974899889807789999983894-69-999989999489998779997478873
No 115
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.14 E-value=5e-09 Score=77.63 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=87.0
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
-+++|||+|||+|++|+++|+.+++.|.+|+||||.+.....+. +-+..+. +-+. ..++.+ |+. ++
T Consensus 14 ~~~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~~~----~ra~~l~---~~s~-~iL~~l-----Gl~-~~ 79 (413)
T PRK07364 14 RSLDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAVAK----GQAYALS---LLSA-RIFEGI-----GVW-EK 79 (413)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC----CCEEEEC---HHHH-HHHHHC-----CCH-HH
T ss_conf 98989989999279999999999868998899917997666788----7389958---9999-999987-----996-89
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-C
Q ss_conf 9999999889999999986998132----7998551001464114567876564079866654266789999998731-2
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSR----NEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-N 168 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r----~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-g 168 (611)
+...+.+|.+ +.++.. ...|.. .....+..-+... -..+...|.+.+... +
T Consensus 80 ---------------i~~~~~~~~~i~~~~~~~~~-~~~~~~------~~~~~~~lg~~~~--~~~l~~~L~~~~~~~~~ 135 (413)
T PRK07364 80 ---------------ILPHIGPFRQIQLSDADFPG-VVRFSP------EDLGTEALGYVGE--HQVLLEALQEFVQSCPN 135 (413)
T ss_pred ---------------HHHHCCCCCEEEEEECCCCC-EEEECH------HHCCCCCCEEEHH--HHHHHHHHHHHHHHCCC
T ss_conf ---------------88614754259998189874-675165------5438875423300--29999999999984899
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 30311315652000134430124689805870899506724741576565
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
|+++..+.++++..+++ .| .+.. . .++....|+|+-||-|-|.-..
T Consensus 136 v~~~~~~~v~~~~~~~~-~v-~v~l-~-~~~~~~~i~a~llIgaDG~~S~ 181 (413)
T PRK07364 136 ITWLCPAQVLSVEYGEH-QA-TVTL-E-IAGQLQTLQSKLVVAADGARSP 181 (413)
T ss_pred CEEEECCEEEEEEECCC-EE-EEEE-E-CCCCEEEEEEEEEEEECCCCCH
T ss_conf 48982877999997698-36-9999-8-2991389985689993188850
No 116
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.14 E-value=2.7e-09 Score=79.40 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=91.9
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
++|||||||+|.+||++|+.+++.|.+|+||||.+.....+.+. ++ .+.+.+. ++. -|+.+ ++
T Consensus 11 ~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~prA~--~l-------~~rtlei-----l~~-lGl~~-~i- 73 (554)
T PRK06183 11 HDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDYPRAV--GI-------DDEALRT-----FQS-IGLVD-EV- 73 (554)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EE-------CHHHHHH-----HHH-CCCHH-HH-
T ss_conf 98888999959899999999997799999991899988888689--98-------9999999-----998-78989-99-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCE
Q ss_conf 9999988999999998699813----27998551001464114567876564079866654266789999998731-230
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAE 170 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~ 170 (611)
.+.|.++. .+.+|..... +. .......++...... -..+.+.|.+.+.+. +++
T Consensus 74 --------------~~~~~~~~~~~~~~~~g~~~~~-~~----~~~~~~~~p~~~~~~---Q~~lE~~L~~~l~~~~g~~ 131 (554)
T PRK06183 74 --------------LPHTTPNHGMRFLDAKGRCLAD-IA----PTTDEFGWPRRNAFY---QPLLEAVLREGLARFPHVR 131 (554)
T ss_pred --------------HHCCCCCCEEEEEECCCCEEEE-EC----CCCCCCCCCEEEEEC---HHHHHHHHHHHHHHCCCCE
T ss_conf --------------8418414318999489978997-26----876656877144610---9999999999998689989
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 31131565200013443012468980587089950672474157656
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
+..++.++++-.++++ |. +...+..+|+...|+||-||=|-|+-+
T Consensus 132 v~~g~~v~~~~qd~~~-V~-v~~~~~~~g~~~~ira~ylVGaDGa~S 176 (554)
T PRK06183 132 VRFGHEVVALEQDDDG-VT-VTLTDADDGQRETVRARYVVGCDGANS 176 (554)
T ss_pred EEECCEEEEEEECCCC-EE-EEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf 9938899999971884-27-999977999579999768997178870
No 117
>PRK06184 hypothetical protein; Provisional
Probab=99.14 E-value=6.4e-09 Score=76.92 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=88.3
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
++||||||+|.+||++|+.++++|.+|+||||.+.....+.+. +++ +.+.+. ++. -|+.+ +
T Consensus 6 tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~--~l~-------~rt~ei-l~~-----lGl~d-~--- 66 (503)
T PRK06184 6 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGK--GIQ-------PRTQEV-FDD-----LGVLD-R--- 66 (503)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EEC-------HHHHHH-HHH-----CCCHH-H---
T ss_conf 5798999909999999999997799899994899988688589--878-------999999-998-----78978-9---
Q ss_pred HHHHHHHHHHHHHHHCCCCCC----CCCCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 999988999999998699813----2799855100-14641145678765640798666542667899999987312303
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFS----RNEAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF 171 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i 171 (611)
+...|.++. ...++.+... .+. +. ......+++...... -..+...|.+++.+.++++
T Consensus 67 ------------i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~---Q~~le~~L~~~l~~~g~~v 129 (503)
T PRK06184 67 ------------VVAAGGLYPPMRIYRDDGSVVESDMMH-HL-KPTPDEPYHLPLMVP---QWRTEEILRERLAELGHRV 129 (503)
T ss_pred ------------HHHCCCCCCCEEEEECCCEEEEEECCC-CC-CCCCCCCCCCEEEEC---HHHHHHHHHHHHHHCCCEE
T ss_conf ------------984357675249996897056510243-34-666676535257722---7999999999998679869
Q ss_pred ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 11315652000134430124689805870899506724741576565
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
..++.++.+-.++++ | .+.-..++....|+|+-||=|-|+-+.
T Consensus 130 ~~g~~v~~~~q~~~~-V---~v~~~~~~~~~~i~a~ylVGaDGa~S~ 172 (503)
T PRK06184 130 EFGCELVGFEQDPEG-V---TARVAGPAGEETVRARYLVGADGGRSF 172 (503)
T ss_pred EECCEEEEEEECCCE-E---EEEEECCCCCEEEEEEEEECCCCCCHH
T ss_conf 947668899981998-9---999985997189998777415777746
No 118
>PRK09126 hypothetical protein; Provisional
Probab=99.12 E-value=8.4e-09 Score=76.15 Aligned_cols=155 Identities=23% Similarity=0.313 Sum_probs=82.9
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
+.|||+|||+|++||.+|+.++++|.+|+|+||.+...-.+.... |-..++.
T Consensus 2 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~-~r~~al~--------------------------- 53 (392)
T PRK09126 2 MHSDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFD-GREIALT--------------------------- 53 (392)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CEEEEEC---------------------------
T ss_conf 989999999258999999999868998999908985334577888-6289868---------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCC----------CCC--CCCCCCE-EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 9999988999999998699----------813--2799855-10014641145678765640798666542667899999
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGV----------PFS--RNEAGKI-YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYG 162 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv----------~f~--r~~~G~~-~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~ 162 (611)
+..++.|+++|+ ++. +..+|.. ....|.. ........-+.- .-..+...|.+
T Consensus 54 -------~~s~~~L~~lG~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~lg~~v--~~~~l~~~L~~ 118 (392)
T PRK09126 54 -------HASREILQRLGAWDRIPEAEISPLRDAKVLNGRSPFALTFDA------RGTGADALGYLV--PNHLIRRAAYE 118 (392)
T ss_pred -------HHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCEEEEECC------CCCCCCCCCEEC--CHHHHHHHHHH
T ss_conf -------999999998789667775076741468995288750475047------556766650002--19999999999
Q ss_pred HHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf 98731-23031131565200013443012468980587089950672474157656543
Q gi|254781043|r 163 QALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY 220 (611)
Q Consensus 163 ~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly 220 (611)
.+.+. +|+++..+.++++..++++ | .+ ...+|+ .+.|+-||-|-|....+-
T Consensus 119 ~~~~~~~v~~~~~~~v~~~~~~~~~-v---~v-~~~~g~--~i~a~llVgADG~~S~vR 170 (392)
T PRK09126 119 AVSQQPGIEILTGHRVKAVTHSDDG-A---QV-TLANGR--RLTARLLVAADSRFSATR 170 (392)
T ss_pred HHHHCCCCEEECCCEEEEEEECCCE-E---EE-EECCCC--EEEEEEEEEECCCCCHHH
T ss_conf 9985899699869888999975980-5---99-985898--888779998068886111
No 119
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.11 E-value=3.4e-09 Score=78.68 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=85.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1058898996899999999998898299998689-885210411653425137899999999999899845887799999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
.+||+|||+|++||++|+.++++|.+|+|+||.+ ...... . ++ ++ .+..+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~--r--~~--~l-----------------------~~~~~ 52 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG--R--GI--AL-----------------------SPNAL 52 (387)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--E--EE--EE-----------------------CHHHH
T ss_conf 85499999789999999999828996899907761135575--5--99--98-----------------------98999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC-CE
Q ss_conf 9999988999999998699813----279985510014641145678765640798666542667899999987312-30
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN-AE 170 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g-v~ 170 (611)
+.|-+-... +.++..+++.. .+.++. ....|...... +......+. =..+...|.+++.+.+ |+
T Consensus 53 ~~L~~lG~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~-----~~~l~~~L~~~~~~~~~v~ 121 (387)
T COG0654 53 RALERLGLW--DRLEALGVPPLHVMVVDDGGR-RLLIFDAAELG---RGALGYVVP-----RSDLLNALLEAARALPNVT 121 (387)
T ss_pred HHHHHCCCH--HHHHHCCCCCEEEEEEECCCC-EEEEECHHHCC---CCCCEEEEE-----HHHHHHHHHHHHHHCCCEE
T ss_conf 999984990--777615788603799965996-38981522168---776279988-----8999999999987189829
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 31131565200013443012468980587089950672474157656
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
++..+.++++..++ +.|. + .++. +|+ .+.|+-||-|-|..+
T Consensus 122 l~~~~~v~~~~~~~-~~v~-v-~l~~-dG~--~~~a~llVgADG~~S 162 (387)
T COG0654 122 LRFGAEVEAVEQDG-DGVT-V-TLSF-DGE--TLDADLLVGADGANS 162 (387)
T ss_pred EEECCEEEEEEECC-CEEE-E-EEEC-CCE--EEECCEEEECCCCCH
T ss_conf 99577799988539-7379-9-9903-991--997599998899876
No 120
>PRK07233 hypothetical protein; Provisional
Probab=99.09 E-value=1.2e-08 Score=75.09 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 66789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r 154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
..|.++|.+.+.+.|++|..++.|+.+..+ +++|+|+.. +|+ .+.|++||+|+--
T Consensus 197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~~v~~v~~----~g~--~~~ad~VI~a~p~ 251 (430)
T PRK07233 197 GTLLDALAEAIEARGGEIRLGTPVTEVVIE-GGVVTGVET----DGE--EEAFDAVISTIPP 251 (430)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEE-CCEEEEEEE----CCC--EEECCEEEECCCH
T ss_conf 999999999999759999979978899995-998999997----994--9993999989998
No 121
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.09 E-value=9.5e-09 Score=75.80 Aligned_cols=165 Identities=17% Similarity=0.237 Sum_probs=82.2
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
.+||+|||+|++||++|+.++++|.+|+|+||....+..+.....-. .++ .+.|.+. ++. + ++- +++-.
T Consensus 6 ~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~-~al---~~~s~~~-L~~-l----Gl~-~~i~~ 74 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRV-YAF---AADNAAL-LDR-L----GVW-PAVRA 74 (392)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE-EEE---CHHHHHH-HHH-C----CCH-HHHHH
T ss_conf 99889999069999999999866997899917898755568887369-999---8899999-998-7----981-66775
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
. ....+..+.- |+....+.+... .... . ......++. =..+...|.+.+.+.+|++...+.
T Consensus 75 ~----~~~p~~~~~v----~d~~~~~~~~~~---~~~~--~-~~~lg~iv~-----~~~l~~~L~~~~~~~~v~~~~~~~ 135 (392)
T PRK08773 75 A----RVQPYRRMRV----WDAGGGGELGFD---ADTL--G-REQLGWIVE-----NDLLVDRLWAAVHAAGIQLHCPAR 135 (392)
T ss_pred C----CCCCEEEEEE----EECCCCCEEEEC---HHHC--C-CCCCCCEEE-----HHHHHHHHHHHHHCCCCEEECCCE
T ss_conf 1----6773135899----845898347536---5662--8-545653225-----499999999998608998974868
Q ss_pred EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 652000134430124689805870899506724741576565
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
++++..+.++ +.+ ...+|+ .+.|+-||-|-|..+.
T Consensus 136 v~~~~~~~~~----v~v-~~~dg~--~i~a~lvVgaDG~~S~ 170 (392)
T PRK08773 136 VVELEQDADG----VRL-RLDDGS--RLEAALAIAADGAAST 170 (392)
T ss_pred EEEEEECCCE----EEE-EECCCC--EEEEEEEEECCCCCCH
T ss_conf 9999966985----899-977997--9998899983788747
No 122
>PRK08774 consensus
Probab=99.07 E-value=8.9e-09 Score=75.97 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=84.4
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|.+.|||||||+|++|+++|+.+++.|.+|+|||+.+...-.+. .|+ +.. .+
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~~~~~~~~--------------~d~---------R~~-al---- 52 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATPAGAPPAV--------------FDQ---------RNL-SF---- 52 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--------------CCC---------CEE-EE----
T ss_conf 98998789999169999999999668997899937998888667--------------873---------167-73----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCE---EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-C
Q ss_conf 99999998899999999869981327--99855---100146411456787656407986665426678999999873-1
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRN--EAGKI---YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-N 167 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~--~~G~~---~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~ 167 (611)
++..++.|+.+|+ |+.- ....+ .....+.............+.....--.-..+...|.+++.+ .
T Consensus 53 --------~~~s~~~L~~lGv-~~~l~~~~~pi~~i~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~l~~~~ 123 (402)
T PRK08774 53 --------AAATVNALGALGV-MAKLRSAPGPIRRIHVSRAGDFGRVQLDAADYGRDAFGQVVVARDFGEALQARLDELT 123 (402)
T ss_pred --------CHHHHHHHHHCCC-HHHHHHHCCCEEEEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf --------7999999998898-6876640565179998507877556536776088764320016999999999998578
Q ss_pred CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 2303113156520001344301246898058708995067247415765654
Q gi|254781043|r 168 NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 168 gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
++.++..+.++.+....+ .+.++.. ...+|+ ..|+|+-||-|-|+-..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~~g~-~~i~a~llVgADG~~S~v 172 (402)
T PRK08774 124 HLRRYRPARCIGVEPVQD-GLRAVRL-ATADGE-QLVRARLVVGADGSHSAV 172 (402)
T ss_pred CCEEEECEEEEEEEEECC-CCCEEEE-EECCCC-EEEEECEEEECCCCCCCC
T ss_conf 948982228999999536-8616999-937995-798305999958998452
No 123
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.07 E-value=1.6e-09 Score=80.86 Aligned_cols=35 Identities=37% Similarity=0.736 Sum_probs=32.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCC
Q ss_conf 1058898996899999999998898299998-6898
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACIT-KVFP 51 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lie-K~~~ 51 (611)
+|||+|||+|.||+.||+.|++.|++|+||| |..+
T Consensus 3 ~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~ 38 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 469899997889999999999789939999679996
No 124
>PRK07608 hypothetical protein; Provisional
Probab=99.05 E-value=2.9e-08 Score=72.68 Aligned_cols=152 Identities=23% Similarity=0.271 Sum_probs=80.8
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 23105889899689999999999889829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
.|+|||+|||+|++||++|+.++++|.+|+|+|+.+....... .++ |+ +. ..+
T Consensus 3 ~m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~---~~~---------~~---------R~-~al----- 55 (389)
T PRK07608 3 HMKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQPPAPRPAD---DAW---------DS---------RV-YAI----- 55 (389)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCC---------CC---------CE-EEE-----
T ss_conf 8999889999068999999999837998899958998766666---676---------75---------17-898-----
Q ss_pred HHHHHHHHHHHHHHHHHCCC----------CC-----CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 99999988999999998699----------81-----3279985510014641145678765640798666542667899
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGV----------PF-----SRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT 159 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv----------~f-----~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~ 159 (611)
++..++.|+++|+ |+ ..+..+.+.... .....+...+.-. -..+...
T Consensus 56 -------~~~s~~~L~~lGv~~~l~~~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ii~--~~~l~~~ 117 (389)
T PRK07608 56 -------SPSSQAFLERLGVWQALDAARLAPVYDMRVYGDAHGRLHFSA---------YQAAVPQLAWIVE--SSLIERA 117 (389)
T ss_pred -------CHHHHHHHHHCCCHHHHHHHCCCEEEEEEEECCCCCEEECCC---------CCCCCCCEEEEEE--HHHHHHH
T ss_conf -------899999999879854555432640678999647785463463---------3358984144410--7999999
Q ss_pred HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 99998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
|.+.+.+.+...+..+.++.+..++++ | . ....+|+ .+.|+-||-|-|.-..
T Consensus 118 L~~~~~~~~~i~~~~~~~~~~~~~~~~-v---~-v~~~~g~--~i~a~llVgADG~~S~ 169 (389)
T PRK07608 118 LDAALRFQGNLTWFDARAQGLDVTPDA-A---T-LTLSDGQ--VLEADLVVGADGAHSW 169 (389)
T ss_pred HHHHHHHCCCEEEECCEEEEEEECCCC-E---E-EEECCCC--EEEEEEEEEECCCCHH
T ss_conf 999986189869988788899972991-7---9-9988998--9996589996699768
No 125
>PRK08244 hypothetical protein; Provisional
Probab=99.05 E-value=1.9e-08 Score=73.76 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=85.5
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
+++||||||+|.+||++|+.+++.|.+|+||||.+...-.+.+. ++ .+.+.+. ++. -|+.+ ++
T Consensus 1 m~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~--~l-------~~rt~ei-----l~~-~Gl~~-~l- 63 (494)
T PRK08244 1 MKTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKAL--TL-------HPRTLEL-----LEM-RGLLE-RF- 63 (494)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EC-------CHHHHHH-----HHH-CCCHH-HH-
T ss_conf 99899999947899999999997799999990899988899874--60-------8999999-----998-78988-98-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
.+.+.. +..| .|... +..+ .|... ....+...+.. -..+...|.+.+.+.+++++..+
T Consensus 64 ---~~~g~~----~~~~--~~~~~-~~~~---~~~~~------~~~~~~~~~~~---Q~~le~iL~~~a~~~g~~v~~g~ 121 (494)
T PRK08244 64 ---LEKGRK----LPSG--HFAGL-DTRL---DFSAL------DTRANYTLFLP---QAETEKILEEHARSLGVEILRGH 121 (494)
T ss_pred ---HHHCEE----CCCC--EEECC-CCCE---ECCCC------CCCCCCEEEEC---HHHHHHHHHHHHHHCCCEEEECC
T ss_conf ---852107----6563--68144-3303---20335------77888269815---59999999999984798899686
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 565200013443012468980587089950672474157656
Q gi|254781043|r 176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.++.+..+++ .|. +...+ .+| ...++|+-||=|-|+-+
T Consensus 122 e~~~~~~~~d-~V~-~~~~~-~~g-~~~i~a~ylVGaDGa~S 159 (494)
T PRK08244 122 EALAVRQDGD-GVE-VVVRG-PDG-LRTLTSLYAVGADGAGS 159 (494)
T ss_pred EEEEEEECCC-EEE-EEEEE-CCC-CEEEEEEEEEEECCCCC
T ss_conf 8999998699-789-99990-897-68998779998246672
No 126
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.04 E-value=1.3e-08 Score=74.82 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 266789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
+..+...+.+.+.+.|.+|..++.|..+..++ ++|.+.+ ..+|+ .|.|++||+|+-.
T Consensus 207 ~~~~~~~~~~~l~~~g~~i~l~~~V~~I~~~~-~~v~~~~---~~~g~--~~~ad~VI~a~p~ 263 (430)
T TIGR03467 207 SELFPEPARRWLDSRGGEVRLGHRVRALEANA-GGIRALI---RAGGE--TLTADAVVLAVPP 263 (430)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEEEEE---ECCCE--EEECCEEEECCCH
T ss_conf 77799999999996497677698368999979-9889999---50987--9977999989898
No 127
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=99.03 E-value=1.6e-08 Score=74.36 Aligned_cols=192 Identities=20% Similarity=0.241 Sum_probs=105.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CHHC----------------CCCEE--------------
Q ss_conf 105889899689999999999889829999868988521--0411----------------65342--------------
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH--TVAA----------------QGGIA-------------- 64 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~--s~~A----------------~GGi~-------------- 64 (611)
+..|||||+|+|||+||.=+|++|++|.|+|.....+|+ |+-- -|||-
T Consensus 1 ~~~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GGCAgTFrRr~ftFDVGATQVAGLEpGGiH~riF~~L~~pLP~A 80 (499)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGLPLPEA 80 (499)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEECCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 97069981872678999999853996799974012787544343687454045522136789857999998548878988
Q ss_pred ------E--ECCCCC--------CCCHHHHH-------------HHHHHHCCCC-----------CCHHHHHHHHHHHHH
Q ss_conf ------5--137899--------99999999-------------9899845887-----------799999999998899
Q gi|254781043|r 65 ------A--SLANMT--------PDSWQWHL-------------YDTIKGSDWL-----------GDVDAIQYLAMEAPQ 104 (611)
Q Consensus 65 ------a--~~~~~~--------~Ds~~~~~-------------~Dt~~~g~~l-----------~d~~lv~~~~~~a~~ 104 (611)
| .++... +|.|..-. -+.+-...|- +-.|+-..+..==|+
T Consensus 81 ~~lDPAC~V~L~dg~~PI~lWhDp~rW~~ER~~qFPGSe~FW~l~~~lf~~nW~F~~RdPvLPprn~WDL~QL~~AlRP~ 160 (499)
T TIGR02733 81 KILDPACAVYLPDGSEPINLWHDPERWQKERERQFPGSERFWSLCEQLFQSNWRFAQRDPVLPPRNLWDLLQLVSALRPD 160 (499)
T ss_pred CCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf 40688336777879511002358078899986408885778999999986053011678635677778999999874630
Q ss_pred HH-----------HHHHHCCCCCCCCCC-------CCEEEE-------CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 99-----------999986998132799-------855100-------14641145678765640798666542667899
Q gi|254781043|r 105 SV-----------YELEHYGVPFSRNEA-------GKIYQR-------PFGGHMQNYGEGPPVQRTCAAADRTGHAILHT 159 (611)
Q Consensus 105 ~i-----------~~Le~~Gv~f~r~~~-------G~~~~~-------~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~ 159 (611)
++ |+|.-.|+-=+|.=. -.|.|. -+|....... ..|+-.|.=-++=+.|=+.
T Consensus 161 tLlT~~~~~~Tv~DlL~l~gl~~D~RLr~FLDLQLKLYSQ~~Ad~TAaLYgATvL~~~---Q~P~GLwHL~GSMQ~LSD~ 237 (499)
T TIGR02733 161 TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA---QAPRGLWHLHGSMQVLSDR 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---CCCCCCCCCCCCHHHHHHH
T ss_conf 4556877753399999983368883588875554223322203678999999999984---3787550013202357899
Q ss_pred HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEE
Q ss_conf 99998731230311315652000134430124689805870899506724741
Q gi|254781043|r 160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLA 212 (611)
Q Consensus 160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILA 212 (611)
|.+..++.|.+++.+++|+++.+++ ++..+.++.+.++++...++|.-||..
T Consensus 238 L~~al~~~GG~l~~gqrV~~I~~~~-~~~~~~~v~~~r~~~~~~~~A~d~V~~ 289 (499)
T TIGR02733 238 LVEALKRDGGRLLTGQRVTAIETKG-GRAGWVVVVDSRKQEDEQVKADDVVAN 289 (499)
T ss_pred HHHHHHHCCCEEEEEEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHCCEEE
T ss_conf 9999986798798600232344316-841568874164114677442031200
No 128
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.02 E-value=2.2e-08 Score=73.36 Aligned_cols=153 Identities=24% Similarity=0.351 Sum_probs=84.2
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 23105889899689999999999889829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
++.+||+|||+|++|+.+|+.+++.|.+|+|+||.+....... ..+|. +. ..+
T Consensus 3 ~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~------------~~~d~---------R~-~al----- 55 (391)
T PRK08020 3 NQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVAD------------SQPDV---------RI-SAI----- 55 (391)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC------------CCCCC---------EE-EEE-----
T ss_conf 9998489999369999999999866997899948998766655------------79873---------38-987-----
Q ss_pred HHHHHHHHHHHHHHHHHCCC----------CCCCC-----CCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 99999988999999998699----------81327-----9985510014641145678765640798666542667899
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGV----------PFSRN-----EAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT 159 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv----------~f~r~-----~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~ 159 (611)
++..++.|+++|+ |+.+- ..+.+. |.... ...+-.-|.-. -..+..+
T Consensus 56 -------~~~s~~~L~~lGvw~~~~~~~~~~~~~~~~~~~~~~~~~---f~~~~------~~~~~lg~~v~--~~~l~~~ 117 (391)
T PRK08020 56 -------SAASVALLKGLGVWDAVQAMRCHPYRRLETWEWETAHVV---FDAAE------LKLPELGYMVE--NRVLQQA 117 (391)
T ss_pred -------CHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCEEE---ECHHH------CCCCCCCCCCC--HHHHHHH
T ss_conf -------889999999888848778625687148986127885587---25443------28975401212--6999999
Q ss_pred HHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 9999873-12303113156520001344301246898058708995067247415765654
Q gi|254781043|r 160 LYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 160 L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
|.+++.+ .+|+++..+.++++-.++++ + . ....+|+ .+.|+-||-|-|....+
T Consensus 118 L~~~l~~~~~v~~~~~~~v~~i~~~~~~-~---~-v~l~~g~--~i~a~lvIgADG~~S~v 171 (391)
T PRK08020 118 LWQALEAHPNVTLRVPASLIALHRHDDG-W---E-LELADGE--TIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHCCCCEEEECCEEEEEEECCCE-E---E-EEECCCC--EEEECEEEEECCCCCHH
T ss_conf 9999983899699958802688974986-8---9-9948999--99837999907997054
No 129
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.02 E-value=5e-08 Score=71.09 Aligned_cols=69 Identities=25% Similarity=0.305 Sum_probs=50.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|-|||||.|||+||..+++.|.+|.|.|+.+..+ |+. ....|+ |.-..+.+.
T Consensus 312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~G--------GlL---~yGIP~--------------fRLPK~vv~-- 364 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG--------GML---TFGIPP--------------FKLDKTVLS-- 364 (639)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CEE---EECCCC--------------CCCCHHHHH--
T ss_conf 89998975899999999997599069993688889--------868---535874--------------527778999--
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 998899999999869981327
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRN 119 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~ 119 (611)
..|++|+++||.|..+
T Consensus 365 -----rei~~l~~lGV~f~~n 380 (639)
T PRK12809 365 -----QRREIFTAMGIDFHLN 380 (639)
T ss_pred -----HHHHHHHHCCCEEEEC
T ss_conf -----9999998649889919
No 130
>PRK06834 hypothetical protein; Provisional
Probab=99.02 E-value=1.6e-08 Score=74.36 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=83.6
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1058898996899999999998898299998689885-210411653425137899999999999899845887799999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR-SHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~-g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
++||||||+|.+||++|+.+++.|.+|+||||.+... -++.+. ++ ...+.+. ++. -|+.++
T Consensus 3 ~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA~--~l-------~~rt~ei-----l~~-~Gl~d~--- 64 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRAG--GL-------HARTLEV-----LDQ-RGIVDR--- 64 (488)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEE--EE-------CHHHHHH-----HHH-CCCHHH---
T ss_conf 89899989388999999999976999999968999877698484--77-------8999999-----998-799899---
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
+...+ .... ..+..+.+ +....++ ...++.-.+. -..+.+.|.+.+.+.+++++..+
T Consensus 65 --~~~~g-~~~~---~~~~~~~~-----~~~~~~p-------~~~~~~~~~~-----Q~~lE~iL~~~l~~~~~~v~~g~ 121 (488)
T PRK06834 65 --FLAEG-QVAQ---VTGFAQIR-----LDISDFP-------TRHNYGLALR-----QNHIERILAEWVGELGVPIYRGR 121 (488)
T ss_pred --HHHCC-CCCC---CCCCCCEE-----CCHHHCC-------CCCCCEEEEE-----HHHHHHHHHHHHHHCCCEEEECC
T ss_conf --98426-5211---12401202-----5676587-------7778378854-----89999999999985899798088
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 565200013443012468980587089950672474157656
Q gi|254781043|r 176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.++++-.+++| |.+ ...+|+ +++|+-||=|-|+-+
T Consensus 122 ~v~~~~~~~~g----V~v-~~~dg~--ti~a~ylVGaDGa~S 156 (488)
T PRK06834 122 EVTGFTQDDTG----VDV-ELSDGS--TLRAQYLVGCDGGRS 156 (488)
T ss_pred EEEEEEECCCE----EEE-EECCCC--EEEEEEEEEECCCCC
T ss_conf 89999983996----899-988982--798758997067674
No 131
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.01 E-value=1.4e-08 Score=74.61 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=32.2
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 31058898996899999999998898299998689
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
|+|||+|||+|+||++|||++.++|+++.+|+.+.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 96307997672888899999996588079985770
No 132
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.00 E-value=5.3e-08 Score=70.90 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=87.0
Q ss_pred EEECEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 31058898996899999999998-89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAE-KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e-~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
.++||||||+|.+||++|+.+++ +|.+|.||||.+-....+.+. |++ +-+.|. ++. -|+.+ +
T Consensus 31 ~~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~~~~~~~rA~--gl~-------~RTlEi-----l~~-~Gla~-~- 93 (634)
T PRK08294 31 DEVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKPGRLELGQAD--GIA-------CRTMEM-----FQA-FGFAE-R- 93 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--EEC-------HHHHHH-----HHH-CCCHH-H-
T ss_conf 858889999658999999998713799889992799999998837--777-------899999-----987-79858-9-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC-CCC--CCEEEECCCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHCC--
Q ss_conf 999999889999999986998132-799--855100146411456787-65640798666542667899999987312--
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSR-NEA--GKIYQRPFGGHMQNYGEG-PPVQRTCAAADRTGHAILHTLYGQALKNN-- 168 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r-~~~--G~~~~~~~gg~~~~~~~g-~~~~R~~~~~d~tG~~i~~~L~~~~~~~g-- 168 (611)
+.+++. ++. .+.|-+ ++. +.+.. . +.......+ ..+|...- .-..+.+.|.+.+++.+
T Consensus 94 ---i~~~g~----~~~--~~~~w~~~~~~~~~i~r--~-~~~~~~~~~~s~~p~~~l----~Q~~~e~~l~~~l~~~~~~ 157 (634)
T PRK08294 94 ---ILAEAY----WIN--ETAFWKPDPANPARIVR--S-GRVQDVEDGLSEFPHVIL----NQARVHDYFLDFMRNSPTR 157 (634)
T ss_pred ---HHHCCE----ECC--EEEEECCCCCCCCCEEE--C-CCCCCCCCCCCCCCCEEC----CHHHHHHHHHHHHHHCCCE
T ss_conf ---985260----144--37885578877761355--5-757777777677862754----5488999999999865870
Q ss_pred CEEECCCEEEEEEECCCCC-CEEEEEEEE---CCCEEEEECCCCEEEECCCCCC
Q ss_conf 3031131565200013443-012468980---5870899506724741576565
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGC-CVGVVAWQL---ETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~-V~Gav~~~~---~~G~~~~i~AkaVILATGG~~~ 218 (611)
+++...+.++++-.++++. .+-|...+. .+|+.++++||-||=|-|+-+.
T Consensus 158 v~~~~g~~~~~~~~d~~~~~pV~vtl~~~~~~~~g~~~tvrA~YlVGcDGA~S~ 211 (634)
T PRK08294 158 LEPDYGYEFVDLEVDEDGDYPVTVTLRRTDGEREGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred EEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCH
T ss_conf 786541599888975787753599997268766784379996179876877632
No 133
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=99.00 E-value=1.2e-08 Score=75.16 Aligned_cols=182 Identities=23% Similarity=0.303 Sum_probs=101.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH-H-CCC-----------CE-------------EEECC---
Q ss_conf 0588989968999999999988982999986898852104-1-165-----------34-------------25137---
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV-A-AQG-----------GI-------------AASLA--- 68 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~-~-A~G-----------Gi-------------~a~~~--- 68 (611)
||+||||||+.||.+|-.++.+|++|+|+||=-+.+|++- + -+| |+ +++..
T Consensus 1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~IPGGS~G~f~R~GY~FDVGaS~iFGfg~~G~~NLlTrALaaVg~~~e 80 (506)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGEKLE 80 (506)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 94789816831789999998546225532201147887675104763442022445415777745589999998622410
Q ss_pred ----------CCC-------CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCCC
Q ss_conf ----------899-------99999999989984588779999999999889999999986998-----------13279
Q gi|254781043|r 69 ----------NMT-------PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVP-----------FSRNE 120 (611)
Q Consensus 69 ----------~~~-------~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~-----------f~r~~ 120 (611)
..+ .-.++.+++|... .+=-..+=++.|-++.-+..+-|..+-+. |-+.+
T Consensus 81 ~ipDp~~~~yHlP~~L~~~v~R~Y~~F~~~L~a--~FP~E~~Gi~~FYd~CW~vF~cLn~~eL~SLEeP~YL~~~Ff~~P 158 (506)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVDREYDKFLQELVA--KFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLLRVFFKKP 158 (506)
T ss_pred CCCCCCEEEEECCCCCCEEEECCHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCH
T ss_conf 257853688776899851473318899999986--177501027787777889997530022223457058999986232
Q ss_pred -------------CCCEEEE--------CC-----------C-CCCC----------CCCCCCCCCEEEEECCCCCHHHH
Q ss_conf -------------9855100--------14-----------6-4114----------56787656407986665426678
Q gi|254781043|r 121 -------------AGKIYQR--------PF-----------G-GHMQ----------NYGEGPPVQRTCAAADRTGHAIL 157 (611)
Q Consensus 121 -------------~G~~~~~--------~~-----------g-g~~~----------~~~~g~~~~R~~~~~d~tG~~i~ 157 (611)
-|.++.+ .| . -.+. ....|..+|+ +..| +|-
T Consensus 159 l~CLgL~~yLP~N~G~iAR~~I~Dp~LL~FID~ECf~~SvvpA~~TPMINAgMVfsDRH~GGiNYP~-----GGVG-~IA 232 (506)
T TIGR02730 159 LACLGLAKYLPQNVGDIARRYIKDPELLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPK-----GGVG-QIA 232 (506)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCC-----CCHH-HHH
T ss_conf 5788898750114457878523852143232100445663010258740011210034557633898-----8754-899
Q ss_pred HHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEEC
Q ss_conf 99999987312303113156520001344301246898058708995067247415
Q gi|254781043|r 158 HTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLAT 213 (611)
Q Consensus 158 ~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILAT 213 (611)
+.|.+-+.+.|.+|+++..|+++|.|+ ++.+||. +.+|+ .|+||.||--.
T Consensus 233 ~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~-~~AvGV~---L~~G~--~~~~k~ivSNA 282 (506)
T TIGR02730 233 EKLVKGLEKHGGKIRYKARVTKIILEN-GKAVGVK---LADGE--KIYAKRIVSNA 282 (506)
T ss_pred HHHHHHHHHCCCCEEEEEEEEEEEECC-CCEEEEE---ECCCC--EEECCEEEECC
T ss_conf 999988874164056300245545208-8455568---64883--65211676316
No 134
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=99.00 E-value=3.9e-09 Score=78.37 Aligned_cols=289 Identities=24% Similarity=0.378 Sum_probs=137.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEECCCCCC------CCHHHHHHHHHHHCCCC
Q ss_conf 1058898996899999999998898299998689-8852104116534251378999------99999999899845887
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASLANMTP------DSWQWHLYDTIKGSDWL 89 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~~~~~~------Ds~~~~~~Dt~~~g~~l 89 (611)
.||+-|||+|.-|++||-.||..|+||.+.|.-- +..|--+-.-||.+..-+=.+. -.+..+|+|.- +=.|-
T Consensus 2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViRGCVPKKl~VYaS~f~~~ledA~-gYGW~ 80 (478)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIRGCVPKKLMVYASEFAEELEDAK-GYGWT 80 (478)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHH-CCCCE
T ss_conf 76306870671668999999872990898215678735122377467478824407503572122302335552-48846
Q ss_pred CCHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-H
Q ss_conf 79999---9999998899999999869981327998551001464114567876564079866654266789999998-7
Q gi|254781043|r 90 GDVDA---IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-L 165 (611)
Q Consensus 90 ~d~~l---v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~ 165 (611)
...+. ++.|...--+.|..|+ .||.+. .
T Consensus 81 i~e~~~f~W~~l~~~k~~Ei~RL~------------------------------------------------~lY~~~L~ 112 (478)
T TIGR01424 81 IVEKARFDWKKLLAKKDKEIARLS------------------------------------------------GLYKKLLA 112 (478)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHH------------------------------------------------HHHHHHHH
T ss_conf 872111577898765778888666------------------------------------------------88899888
Q ss_pred HCCCEEECCCEEEEEEECCCCCCEEEEEEE-ECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf 312303113156520001344301246898-0587089950672474157656543342106401444887887513653
Q gi|254781043|r 166 KNNAEFFIEYFALDLIINSEGCCVGVVAWQ-LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 166 ~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~-~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l 244 (611)
+.|++++..- + + |+|. +.|. +...| -.+|+...|.|+.+++||||=.. .-| ..- |.+|
T Consensus 113 ~AGv~Ll~Gr-A-~-~vd~-~tVe-v~~~dGsddg~ki~yTA~kIliA~Ggrps-----~kP-~lP----------G~El 171 (478)
T TIGR01424 113 KAGVELLEGR-A-E-LVDP-NTVE-VLEKDGSDDGKKITYTAKKILIAVGGRPS-----VKP-ELP----------GHEL 171 (478)
T ss_pred HHCEEEEECC-E-E-EECC-CEEE-EEEECCCCCCCEEEEEEEEEEEEECCCCC-----CCC-CCC----------CCCC
T ss_conf 5330443043-3-7-8368-1579-74103787883167877599998778787-----888-856----------8521
Q ss_pred C--CCCCCCC--CCCCC--CCCEEECCCC---CCCCCEEE-EECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCC
Q ss_conf 3--3322232--88844--2201430456---65578089-832686125540765100475201115688998817888
Q gi|254781043|r 245 Q--DMEFVQF--HPTGI--YGAGCLITEG---ARGEGGYL-VNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV 314 (611)
Q Consensus 245 ~--~mEf~qf--hPt~~--~~~~~l~~~~---~rg~G~~l-~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~ 314 (611)
. -=|.+.. .|+.+ .+.|..-.|. .||.|... +=-.|+..+...+. --|.-..+-.+.||+
T Consensus 172 gITSdEaf~L~~lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~iL~GFD~----------d~R~~~~~~le~~Gi 241 (478)
T TIGR01424 172 GITSDEAFHLPTLPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEKILRGFDD----------DMRAELAEELEERGI 241 (478)
T ss_pred CCCCHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCCCH----------HHHHHHHHHHHCCCE
T ss_conf 3041324172005546899867600120222323678325234516654676868----------999999998752973
Q ss_pred C--------------CCCCEEEEEEC-CCCHHHHHH-------HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 8--------------88874688611-179899999-------8537999997643678654406752033100123421
Q gi|254781043|r 315 G--------------KSKDHIHLYLN-HLDPAVLQE-------RLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPT 372 (611)
Q Consensus 315 ~--------------~~~~~v~ld~~-~~~~~~l~~-------~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~v 372 (611)
. .|. ...-++ .-+.+.+.+ |.|+...+-.+..|++.....|| .|. ..+||=|.|
T Consensus 242 ~i~~~~~~~~i~~~~~GR--~~~~~sGe~~~~~vAd~vl~AtGR~Pn~~GLgLE~aGV~~~~~sie-GPG-ystmgAi~V 317 (478)
T TIGR01424 242 RIVPKDSVTSIEKVDDGR--LKVTLSGEKDEEIVADVVLFATGRVPNVKGLGLEAAGVELNDKSIE-GPG-YSTMGAIAV 317 (478)
T ss_pred EEEECCHHHHHHCCCCCC--EEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCC-CCC-CCCCCCEEE
T ss_conf 895010443642078987--8999746899816543323200887765763610115065101014-787-441253665
Q ss_pred CCCCEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 577158537788853322760340212
Q gi|254781043|r 373 NYWGEVLDANSKNPERFAPGLMAIGEA 399 (611)
Q Consensus 373 d~~g~v~~~~~~~~~t~i~GLyAaGe~ 399 (611)
|..- +|++|+.||.|++
T Consensus 318 d~YS----------~T~~P~IyAvGDv 334 (478)
T TIGR01424 318 DEYS----------RTSVPSIYAVGDV 334 (478)
T ss_pred CCCC----------CCCCCCEEEEECC
T ss_conf 1546----------7885777886031
No 135
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.99 E-value=8.3e-08 Score=69.63 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=50.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|-|||||.|||+||..+++.|.+|.|.|+.+..+ |+- ....|+ |.-..+.+.
T Consensus 329 kVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~G--------GlL---~yGIP~--------------fRLpk~vv~-- 381 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIG--------GLL---TFGIPA--------------FKLDKSLLA-- 381 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC--------CEE---EECCCC--------------CCCCHHHHH--
T ss_conf 89998977899999999997697579952577788--------667---524862--------------227789999--
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 998899999999869981327
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRN 119 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~ 119 (611)
..+++|+++||.|..+
T Consensus 382 -----~ei~~l~~lGV~f~~n 397 (654)
T PRK12769 382 -----RRREIFSAMGIHFELN 397 (654)
T ss_pred -----HHHHHHHHCCCEEECC
T ss_conf -----9999998269889837
No 136
>PRK12831 putative oxidoreductase; Provisional
Probab=98.99 E-value=8.7e-08 Score=69.52 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=42.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 23421577158537788853322760340212203356643047643222222321567755665420
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK 435 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~ 435 (611)
-|+.+|.+|.+. .+.++++|++||+||+|++. . |.+.+..++-.||.|+.++.+|+.+
T Consensus 405 ~gi~~~~~g~i~-~~~~~~~Ts~~gVFa~GD~~-~--------G~~~vV~Ai~~Gr~AA~~I~~yL~g 462 (464)
T PRK12831 405 PGLEINKRGCIV-ADEETGLTSIEGVYAGGDAV-T--------GAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CCEEECCCCCEE-ECCCCCCCCCCCEEECCCCC-C--------CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 680277999888-47899842899999827867-6--------8339999999999999999999735
No 137
>PRK07208 hypothetical protein; Provisional
Probab=98.99 E-value=9.8e-08 Score=69.16 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEE
Q ss_conf 66789999998731230311315652000134430124689805870899506724741
Q gi|254781043|r 154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLA 212 (611)
Q Consensus 154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILA 212 (611)
.+|..+|.+++.+.|+++..++.++.+..+ ++++..++... .+|.-..+.++.||.+
T Consensus 212 g~l~e~l~~~l~~~G~~i~~n~~V~~I~~~-~~~~~~~~~~~-~~~~~~~~~~d~vIsT 268 (474)
T PRK07208 212 GQLWEAAAEKLEAEGVKVVLNAKVTGLHHD-GGRIVSVVAED-QDGNETTATGDQVISS 268 (474)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEC-CCEEEEEEEEE-CCCCEEEEECCEEEEC
T ss_conf 269999999998729878669878999834-98899999984-2796369988879998
No 138
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.99 E-value=3.3e-08 Score=72.27 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=82.9
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
+.+||+|||+|++|+++|+.+++.|.+|+|||+.+...... -+...+ |. .. . .+
T Consensus 1 m~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~~~~~~~-~~~~~~---------~~-R~--------~-al------ 54 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALEGSGLEVLLVDGGPLSVKPF-DPQAPF---------EP-RV--------S-AL------ 54 (405)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCC---------CC-CE--------E-EE------
T ss_conf 99889999905999999999961899789995899777877-667789---------84-25--------5-67------
Q ss_pred HHHHHHHHHHHHHHHHCCC----------CCC------CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 9999988999999998699----------813------279985510014641145678765640798666542667899
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGV----------PFS------RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT 159 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv----------~f~------r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~ 159 (611)
++..++.|+++|+ |+. ....+.+. |.... ...+..-+.-. -..+..+
T Consensus 55 ------~~~s~~~L~~lG~~~~l~~~~~~p~~~~~v~d~~~~~~~~---f~~~~------~~~~~lg~vv~--~~~l~~~ 117 (405)
T PRK05714 55 ------SAASQRILERLGAWDGIAARRASPYSDMQVWDGSGTGQIH---FSAAS------VHAEVLGHIVE--NRVVQDA 117 (405)
T ss_pred ------CHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCCEEE---ECCCC------CCCCCCCCHHH--HHHHHHH
T ss_conf ------7998999998798165687357761245520589862276---44101------47644411232--6999999
Q ss_pred HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 99998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
|.+++.+.+|.++..+.+.++-.+.|+ + . ....+|+ .++|+-||-|-|.-..
T Consensus 118 L~~~l~~~~v~~~~~~~v~~~~~~~~~-~---~-v~l~~g~--~i~a~llVgADG~~S~ 169 (405)
T PRK05714 118 LLERLHDSDIGLLANARLEQMRRSGDD-W---L-LTLADGR--QLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHCCCEEECCCEEEEEEECCCE-E---E-EEECCCC--EEECCEEEECCCCCCH
T ss_conf 999997279889848789999983880-7---9-9967997--9863889995899856
No 139
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.98 E-value=6.8e-08 Score=70.20 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=83.3
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
.+||||||+|+|||++|+.++++|.+|.|+||.+..+.. +.||+. .+.+. ..++. -|+
T Consensus 2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~~~----G~gi~l-----~pn~~-~~L~~-----lGl------- 59 (400)
T PRK06475 2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQELSEV----GAGLQL-----APNAM-RHLER-----LGV------- 59 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC----CCEEEE-----CHHHH-HHHHH-----CCC-------
T ss_conf 997999895889999999999789999999179988888----847888-----88999-99998-----799-------
Q ss_pred HHHHHHHHHHHHHHHCCCCCC----CC-CCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCC
Q ss_conf 999988999999998699813----27-99855100-146411456787656407986665426678999999873-123
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFS----RN-EAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNA 169 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~----r~-~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv 169 (611)
.+.+.+.|+.-. ++ ..+..... .+..... ...+.++ ..++ -..+...|.+.+.+ .+|
T Consensus 60 ---------~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~p~-~~i~-----R~~L~~~L~~~~~~~~~i 123 (400)
T PRK06475 60 ---------ADRLSGTGVTPKALYLMDGRKARPLLHMQLGDLAR-KRWHHPY-IVCH-----RADLQSALLDACRNNPGI 123 (400)
T ss_pred ---------HHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCC-CCCCCCE-EEEE-----HHHHHHHHHHHHHHCCCC
T ss_conf ---------27888438886259996078674565202443222-2578965-9977-----899999999999748994
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 03113156520001344301246898058708995067247415765654
Q gi|254781043|r 170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
++.....++++..++ +.|. +...+..+ ...+.|+-||=|-|-.+.+
T Consensus 124 ~i~~g~~v~~~~~~~-~~v~-~~~~~~~~--~~~~~adlvIGADGi~S~v 169 (400)
T PRK06475 124 EIKLGAEMTSQRQTG-NSIT-ATIIRTNS--VETVSAAYLIACDGVWSML 169 (400)
T ss_pred EEECCCEEEEEEECC-CCEE-EEEECCCC--CEEEECCEEEECCCCCCCH
T ss_conf 897387899999528-9604-89973898--6699706899669976313
No 140
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.97 E-value=1.6e-08 Score=74.30 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 66789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r 154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
..|+++|.+.+++.|++|..++.|.+++++ +|+.+++.. .+| ..+.++.||.+..-
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~---~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRT---SDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEE-CCCEEEEEE---CCC--CEEECCEEEECCCH
T ss_conf 999999999999749399678713599971-890589980---676--07514689986887
No 141
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.97 E-value=6.7e-08 Score=70.26 Aligned_cols=160 Identities=20% Similarity=0.284 Sum_probs=83.9
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|-+.++|+|||+|+|||++|+.++++|.+|+|+|+.+..+.. +.||+- . +...+. + +.+ |+.+
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~~~~----G~gi~l--~---pn~~~~-L-~~l----Gl~~-- 63 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEI----GAGIQL--G---PNAFSA-L-DAL----GVGE-- 63 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC----CCEEEE--C---HHHHHH-H-HHC----CCHH--
T ss_conf 989984999897889999999999789999999179988878----718898--9---899999-9-987----9908--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999889999999986998-----132799855100-1464114567876564079866654266789999998731
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVP-----FSRNEAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN 167 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~-----f~r~~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~ 167 (611)
.+.+.++. |....+|....+ +.+.... ...+.++.. .+ -..+...|.+.+.+.
T Consensus 64 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~p~~~-i~-----R~~L~~~Ll~~~~~~ 122 (396)
T PRK08163 64 --------------AARQRAVFTDHLTMMDAVDAEEVVRIPTGQAFR-DRFGNPYAV-IH-----RADIHLSLLEAVQDH 122 (396)
T ss_pred --------------HHHHHCCCCCCEEEEECCCCCEEEEECCCCHHH-HHCCCCEEE-EE-----HHHHHHHHHHHHHHC
T ss_conf --------------998316676625999768885888504760456-624997268-77-----999999999999856
Q ss_pred -CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf -230311315652000134430124689805870899506724741576565
Q gi|254781043|r 168 -NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 168 -gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+|++..++.++++-.++ +. |.+. ..+|+ .+.++-||=|-|-.+.
T Consensus 123 ~~v~i~~~~~v~~v~~~~-~~---v~v~-~~dG~--~~~adlvVGADG~~S~ 167 (396)
T PRK08163 123 PLVEFRTSTHVVGIEQDG-DG---VTVF-DQQGN--RWTGDALIGCDGVKSV 167 (396)
T ss_pred CCEEEECCCEEEEEEECC-CE---EEEE-ECCCC--EEEEEEEEECCCCCCH
T ss_conf 981787099999999539-97---9999-88998--9987699964887736
No 142
>PRK07190 hypothetical protein; Provisional
Probab=98.96 E-value=7.2e-08 Score=70.04 Aligned_cols=159 Identities=22% Similarity=0.192 Sum_probs=87.0
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
..+||||||+|..||++|+.++..|.+|+||||.+.....+.+. ++ .+.+.+. +.. -++
T Consensus 4 ~~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~~~~RA~--~l-------~~rtlei-----l~~-~Gl------ 62 (480)
T PRK07190 4 QVADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPLEVGRAD--AL-------NARTLQL-----LEL-ADL------ 62 (480)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EE-------CHHHHHH-----HHH-CCC------
T ss_conf 86448999938899999999988799999996999999998675--75-------6899999-----997-597------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC---CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999889999999986998132---799855100146411456787656407986665426678999999873123031
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSR---NEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF 172 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r---~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~ 172 (611)
.+.+...|.++.. -.+|++..+.. . +.....+...+..... .-..+...|.+.+.+.|+++.
T Consensus 63 ----------~d~l~~~g~~~~~~~~~~~g~~~~~~~-~-~~~~~~~~~~~~~~~~---~Q~~~E~~L~~~~~~~g~~v~ 127 (480)
T PRK07190 63 ----------FDELYPLGKPCNTSSVWADGQFISRQS-S-WWEELEGCLHKHFLML---GQSYVEKLLDEKLKETAAAVK 127 (480)
T ss_pred ----------HHHHHHCCCCCCCEEECCCCEEEECCC-C-CCCCCCCCCCCCEEEE---CHHHHHHHHHHHHHHCCCEEE
T ss_conf ----------899985177554126712885750246-6-6433567777855851---889999999999986699799
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 131565200013443012468980587089950672474157656
Q gi|254781043|r 173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
..+.++++-.++++ +++ .+.+|+ .++|+-||=|-|+-+
T Consensus 128 ~g~~v~~~~~~~~~----v~~-~l~~ge--~i~a~ylVGcDGa~S 165 (480)
T PRK07190 128 RSTAIVNIEINEAG----CLT-TLANGE--RIQSRYVIGADGSRS 165 (480)
T ss_pred ECCEEEEEEECCCC----EEE-ECCCCC--EEEEEEEEEECCCCC
T ss_conf 15289999985893----599-848998--998888886067761
No 143
>KOG4716 consensus
Probab=98.96 E-value=6.5e-08 Score=70.36 Aligned_cols=55 Identities=33% Similarity=0.540 Sum_probs=43.4
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC
Q ss_conf 3231058898996899999999998898299998689885210411653425137
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA 68 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~ 68 (611)
-++.||+||||+|.+||.||-+|+..|++|++++-..+.--++.|.-||..+..+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVG 70 (503)
T KOG4716 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVG 70 (503)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECC
T ss_conf 3477447998688513667799886087079996124578887455585466536
No 144
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.95 E-value=7.7e-08 Score=69.87 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=48.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|.|||||.|||+||..++.+|.+|.|.||.+..+ |+.. ...|+ |.--++.+.
T Consensus 139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~G--------Gml~---~GIP~--------------yRLP~~vl~-- 191 (560)
T PRK12771 139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLG--------GMMR---YGIPG--------------YRLPRDVLD-- 191 (560)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC--------CEEE---CCCCC--------------CCCCHHHHH--
T ss_conf 89998977899999999997698589967678889--------8883---56875--------------447589999--
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 99889999999986998132
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSR 118 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r 118 (611)
..|+++.++||.|..
T Consensus 192 -----~ei~~i~~~GV~~~~ 206 (560)
T PRK12771 192 -----AEIQRILDLGVEVKL 206 (560)
T ss_pred -----HHHHHHHHCCCEEEE
T ss_conf -----999999964967983
No 145
>PRK08132 hypothetical protein; Provisional
Probab=98.95 E-value=9.4e-08 Score=69.28 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=89.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
++||||||+|.+||++|+.++..|.+|+||||.+....++.+. ++ ...+.+. ++. -|+.
T Consensus 23 ~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~~~~~pRA~--~~-------~~rtmei-l~~-----lGl~------ 81 (549)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAI--CF-------SKRSLEI-FDR-----LGCG------ 81 (549)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EE-------CHHHHHH-HHH-----CCCH------
T ss_conf 6999999925799999999998799999995999999999788--88-------9899999-998-----6992------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCC-C-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEEC
Q ss_conf 99998899999999869981327998551001464-1-14567876564079866654266789999998731-230311
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGG-H-MQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFI 173 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg-~-~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~ 173 (611)
+.+.+.|++|. .++...+...- + ......+..++..+.. .-..+...|.+.+.+. ++++..
T Consensus 82 ----------~~i~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l---~Q~~lE~~L~~~~~~~~~v~vr~ 145 (549)
T PRK08132 82 ----------ERMVDKGVSWN---VGKVFLRDEEVYRFDLLPEPGHRRPAFINL---QQYYIEGYLVDRAQALPNIDLRW 145 (549)
T ss_pred ----------HHHHHCCCCCC---CCEEEECCCEEEEECCCCCCCCCCCCEEEC---CHHHHHHHHHHHHHHCCCCEEEE
T ss_conf ----------89996177444---644885686577604788888766815867---99999999999998689978995
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 315652000134430124689805870899506724741576565
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+.++.+-.++|| |. +.. ...+|. +.++|+-||=|-|+-+.
T Consensus 146 g~ev~~~~q~~d~-V~-~~v-~~~~g~-~~vrA~ylVGaDGarS~ 186 (549)
T PRK08132 146 KNKVTGVEQHADG-VV-LTV-ETPDGP-YTLEADWVIACDGARSP 186 (549)
T ss_pred CCEEEEEEECCCC-EE-EEE-ECCCCC-EEEEEEEEEECCCCCCH
T ss_conf 7689999984994-69-999-879986-89998899863778773
No 146
>PRK11749 putative oxidoreductase; Provisional
Probab=98.94 E-value=4.5e-08 Score=71.41 Aligned_cols=59 Identities=19% Similarity=0.398 Sum_probs=41.7
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 342157715853778885332276034021220335664304764322222232156775566542026
Q gi|254781043|r 369 GIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS 437 (611)
Q Consensus 369 Gi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~ 437 (611)
|+..|.++.++. +.++++|++||+||+|++. .| ......++-.|+.|++++.+|+..++
T Consensus 400 g~~~~~~g~i~~-~d~~~~Ts~~gVFAaGD~~-~G--------~~~vv~Ai~~Gr~AA~~I~~~L~G~~ 458 (460)
T PRK11749 400 GLAVTRWGTIIA-DDETGRTSLPGVFAGGDIV-TG--------AATVVLAVGDGKDAAEAIHEYLEGAA 458 (460)
T ss_pred CCEECCCCCEEE-CCCCCCCCCCCEEEECCCC-CC--------CHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 812768999884-6899722899999945877-67--------05999999999999999999858988
No 147
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.93 E-value=1.4e-07 Score=68.18 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=45.4
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 23421577158537788853322760340212203356643047643222222321567755665420265
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP 438 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~ 438 (611)
.||..|.+|.+. .+..+++|++||+||+|++. . |.+.+..++-.|+.|++++.+|+.+.+.
T Consensus 411 ~gl~~d~~G~i~-vd~~~~~Ts~~gVFA~GD~~-~--------G~~~vv~Ai~~Gr~AA~~I~~~L~G~~~ 471 (472)
T PRK12810 411 FGVELDERGRVA-ADEGAYQTSNPKVFAAGDMR-R--------GQSLVVWAIAEGRQAARAIDAYLMGSTP 471 (472)
T ss_pred CCCEECCCCCEE-ECCCCCCCCCCCEEEECCCC-C--------CHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 680287999888-68998745999999836877-7--------8169999999999999999998479989
No 148
>PRK08013 hypothetical protein; Provisional
Probab=98.93 E-value=1.5e-07 Score=67.87 Aligned_cols=151 Identities=20% Similarity=0.264 Sum_probs=81.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
.|||+|||+|++|+++|+.+++.|.+|+||||..+....+.... ...+. .+ +
T Consensus 3 ~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~~~~~~~~~~~-~~R~~---------------------al-~----- 54 (400)
T PRK08013 3 SVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRVPEPLAADAPP-QLRVS---------------------AI-N----- 54 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCEEE---------------------EE-C-----
T ss_conf 67889999359999999999718995899918998767788887-70444---------------------00-8-----
Q ss_pred HHHHHHHHHHHHHHHCCC----------CC------CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 999988999999998699----------81------32799855100146411456787656407986665426678999
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGV----------PF------SRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTL 160 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv----------~f------~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L 160 (611)
+..++.|+++|+ ++ +++.-|.+... .....++...+.-. -..+...|
T Consensus 55 ------~~s~~~L~~lGl~~~i~~~~~~~~~~~~v~~~~~~g~~~~~---------~~~~~~~~lg~ii~--~~~l~~~L 117 (400)
T PRK08013 55 ------AASEKLLTRLGVWQDILARRASCYHGMEVWDKDSFGHISFD---------DQSMGYSHLGHIVE--NSVIHYAL 117 (400)
T ss_pred ------HHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCCEEECC---------CCCCCCCCCEEEEC--CHHHHHHH
T ss_conf ------99999999879807668606776115798637877524326---------20138752304302--08899999
Q ss_pred HHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 9998731-2303113156520001344301246898058708995067247415765654
Q gi|254781043|r 161 YGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 161 ~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
++++.+. +|+++..+.+.++..++ ..+ .+ ...+|+ .|.|+-||-|-|....+
T Consensus 118 ~~~~~~~~~v~~~~~~~v~~i~~~~-~~~-~v---~l~~g~--~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 118 WQKAQQSSDITLLAPAELQQVAWGE-NEA-FL---TLKDGS--MLTARLVIGADGANSWL 170 (400)
T ss_pred HHHHHHCCCEEEECCCEEEEEEECC-CEE-EE---EECCCC--EEEEEEEEECCCCCCHH
T ss_conf 9999868982998686689987169-715-99---947998--99742899978876132
No 149
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.92 E-value=1.1e-07 Score=68.92 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=83.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 105889899689999999999889--829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
+.||+|||+|++|+++|+.+++.| .+|+++|+.+...... .+-+.++. +.|.+ .++. + |+. +++
T Consensus 1 ~~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~----d~Ra~al~---~~s~~-~L~~-l----Gv~-~~l 66 (403)
T PRK07333 1 QRDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSR----DPRASAIA---AAARR-MLEA-L----GVW-QEI 66 (403)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCEEEEEC---HHHHH-HHHH-C----CCH-HHH
T ss_conf 983999994699999999998469996699982886668788----87688867---99999-9998-7----987-887
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 9999998899999999869981327998-551001464114567876564079866654266789999998731230311
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAG-KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G-~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
..++. .+ ..+-+.-.+..+. ......|.+.. ..+.+....+. -..+...|.+++.+.+|++..
T Consensus 67 ----~~~~~-~i---~~~~v~d~~~~~~~~~~~l~f~~~~---~~~~~~~~~v~-----~~~l~~~L~~~~~~~~v~~~~ 130 (403)
T PRK07333 67 ----APEAQ-PI---TDMVITDSRTSDPVRPVFLTFEGEV---EPGEPFAHMVE-----NRVLINALRKRAEALGIDLRE 130 (403)
T ss_pred ----HHHCC-CC---EEEEEEECCCCCCCCCCCCCCCCCC---CCCCCCEEEEE-----HHHHHHHHHHHHHHCCCEEEC
T ss_conf ----75161-00---2799984655776664200246434---56887368745-----899999999999828998985
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 3156520001344301246898058708995067247415765654
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
++.++++-.++++ | .+ ...+|+ .+.|+-||-|-|+-..+
T Consensus 131 ~~~v~~i~~~~~~-v---~v-~l~~g~--~i~a~llIgaDG~~S~V 169 (403)
T PRK07333 131 ATSVTDFETRDEG-V---TV-TLADGS--TLEARLLVAADGARSKL 169 (403)
T ss_pred CCEEEEEEECCCE-E---EE-EECCCC--EEEEEEEEECCCCCHHH
T ss_conf 8857899974980-7---99-978998--99986999834876132
No 150
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.8e-08 Score=72.72 Aligned_cols=113 Identities=29% Similarity=0.416 Sum_probs=75.2
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
-|||||||+|.||-.|||-|+++|.+.-|+-.- .|| + .-||+---.+
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aer----------fGG-------Q--------vldT~~IENf-------- 257 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER----------FGG-------Q--------VLDTMGIENF-------- 257 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHH----------HCC-------E--------ECCCCCHHHE--------
T ss_conf 834999868863167899998612111001565----------188-------2--------0000033330--------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
++||. ..|..+..+|.+.+++..|++++-..
T Consensus 258 ---------------Isv~~----------------------------------teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 258 ---------------ISVPE----------------------------------TEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred ---------------ECCCC----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf ---------------05654----------------------------------54668999999987646824553343
Q ss_pred EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 652000134430124689805870899506724741576
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
+++|..-. .--|.+-..+.+|. ..++|+||||||-
T Consensus 289 a~~l~~a~--~~~~l~ev~l~nGa--vLkaktvIlstGA 323 (520)
T COG3634 289 ASKLEPAA--VEGGLIEVELANGA--VLKARTVILATGA 323 (520)
T ss_pred HHCCEECC--CCCCCEEEEECCCC--EECCCEEEEECCC
T ss_conf 42020157--88860799954783--5113169984276
No 151
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=98.90 E-value=3.3e-08 Score=72.29 Aligned_cols=119 Identities=29% Similarity=0.415 Sum_probs=79.5
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
+||||||||.||++|||=+++.+++.+|+|+..+. .|+|.+. + . +. |
T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G-----~aGGql~--~--T--~~--------------------v-- 47 (321)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPG-----IAGGQLT--T--T--TE--------------------V-- 47 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCC-----CCCCCCC--C--C--CE--------------------E--
T ss_conf 92899847867888999988746727898357777-----4555333--2--2--06--------------------5--
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf 99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA 177 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~ 177 (611)
| .+||.. ..-+|.+|+..|.+|+.+.|.++...-.+
T Consensus 48 ------------E-----------------NYPGf~---------------e~i~G~~L~~~M~~Qa~~fG~~~~~G~~v 83 (321)
T TIGR01292 48 ------------E-----------------NYPGFP---------------EGISGPELMEKMKEQAKKFGAEIIYGEEV 83 (321)
T ss_pred ------------E-----------------CCCCCC---------------CCCCHHHHHHHHHHHHHHCCCCEEECCEE
T ss_conf ------------1-----------------368688---------------87662889999999998706736626705
Q ss_pred EEEEECCCCC-CEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 5200013443-0124689805870899506724741576565
Q gi|254781043|r 178 LDLIINSEGC-CVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 178 ~~Li~d~dG~-V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.++-.. ++ -- ---|-+.++ ..|+||+||||||.-.|
T Consensus 84 ~~v~~~--~~~yE-~~~F~~~~~--~~y~a~avIiAtGa~~r 120 (321)
T TIGR01292 84 IRVDKS--DRAYE-SDPFKVKTG--KEYTAKAVIIATGAEAR 120 (321)
T ss_pred EEEECC--CCCCC-CCEEEEEEC--CEEEEEEEEEECCCHHH
T ss_conf 686337--88436-610389717--56886589991387154
No 152
>PRK10262 thioredoxin reductase; Provisional
Probab=98.90 E-value=9.4e-08 Score=69.30 Aligned_cols=113 Identities=18% Similarity=0.312 Sum_probs=70.2
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
++|||+|||+|.|||+||+.|++.|.+++|+|+.... |. +.. .
T Consensus 5 k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~G-G~-------l~~----~------------------------- 47 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG-GQ-------LTT----T------------------------- 47 (321)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CC-------CCC----C-------------------------
T ss_conf 0600999997689999999999869967999605968-74-------200----5-------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
+ .+. .++|. + .+.+|..+...|.+++.+.++++..+.
T Consensus 48 -------~-------------------~i~--n~pg~----------~-----~~i~G~~l~~~~~~q~~~~~~~i~~~~ 84 (321)
T PRK10262 48 -------T-------------------EVE--NWPGD----------P-----NDLTGPLLMERMHEHATKFETEIIFDH 84 (321)
T ss_pred -------C-------------------CEE--ECCCC----------C-----CCCCHHHHHHHHHHHHHHHCCEEEECC
T ss_conf -------6-------------------035--61788----------8-----764779999999999997087489412
Q ss_pred EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 565200013443012468980587089950672474157656
Q gi|254781043|r 176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
+..+-.++++ ..+ ....|+ +.||+||||||.-.
T Consensus 85 -v~~i~~~~~~----f~v-~t~~g~---~~a~aViiAtG~~~ 117 (321)
T PRK10262 85 -INKVDLQNRP----FRL-TGDSGE---YTCDALIIATGASA 117 (321)
T ss_pred -CCEEEEECCC----EEE-ECCCCE---EEEEEEEEEECCCC
T ss_conf -3157740365----199-758988---99989999646865
No 153
>PRK07045 putative monooxygenase; Reviewed
Probab=98.90 E-value=1e-07 Score=69.08 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=84.4
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
..+||||||+|++||++|+.++++|.+|+|+||.+..+... +++. + .+.+. +.++. -|+.
T Consensus 4 ~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~~~~~~----~~~~--l---~p~~~-----~~L~~-lGl~----- 63 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQN----GADL--L---KPSGI-----GVVRA-MGLL----- 63 (388)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CEEE--E---CHHHH-----HHHHH-CCCH-----
T ss_conf 99858999928899999999986799899990899877778----6348--8---99999-----99998-8696-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCC----CCCCCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCC
Q ss_conf 999998899999999869981----32799855100-146411456787656407986665426678999999873-123
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPF----SRNEAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNA 169 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f----~r~~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv 169 (611)
+.+...|... ....+|..... .+... ....+....+ -..+.+.|.+++.. .++
T Consensus 64 -----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~-----~~~l~~~l~~~~~~~~~v 122 (388)
T PRK07045 64 -----------DDVFAAGGLRRDAMRLYHDKELIASLDYRSA-----SALGYFILIP-----CEQLRRLLLAKLDGLPNV 122 (388)
T ss_pred -----------HHHHHCCCCEEEEEEEECCCCEEEEECCCCC-----CCCCCEEEEC-----HHHHHHHHHHHHHCCCCE
T ss_conf -----------8998607851457999508957987445556-----6668389830-----999999999997458981
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 0311315652000134430124689805870899506724741576565
Q gi|254781043|r 170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+++.++.+..+-.+.++.++.+. ..+|+ .+.++-||-|-|..+.
T Consensus 123 ~~~~~~~v~~v~~~~~~~~~~v~---~~dG~--~~~adlvIGADG~~S~ 166 (388)
T PRK07045 123 RLRFETSIERIERDADGTVTSVT---LSDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred EEEECCEEEEEEECCCCEEEEEE---ECCCC--EEEEEEEEECCCCCCH
T ss_conf 99979899999984992599999---58997--9974099995688627
No 154
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.89 E-value=1.2e-07 Score=68.55 Aligned_cols=157 Identities=21% Similarity=0.207 Sum_probs=80.2
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
++|||+|||+|++|+.+|+.++++|.+|+|+||.+.... .. .+ ++. +.+.+ .++. + |+.
T Consensus 4 ~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~~d-~R----a~--al~---~~s~~-~L~~-l----Gl~----- 62 (386)
T PRK07494 4 EHTDIAVSGGGPAGLAAAIALASAGASVALVAPAPPYAD-LR----TT--ALL---GPSIR-FLER-L----GVW----- 62 (386)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CC----EE--EEC---HHHHH-HHHH-C----CCH-----
T ss_conf 888689999068999999999878998899957998888-86----79--986---89999-9998-8----987-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC----CCCCCEEEE---CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999889999999986998132----799855100---14641145678765640798666542667899999987312
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSR----NEAGKIYQR---PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN 168 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r----~~~G~~~~~---~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g 168 (611)
+.+...+.++.. +..|..... .|.... .+. ....+.-. -..+...|.+++.+.+
T Consensus 63 -----------~~l~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~----~~~--~~~g~~i~--~~~l~~~L~~~~~~~~ 123 (386)
T PRK07494 63 -----------ARLAPHAAPLQSMRIVDATGRLIRAPEVRFRASE----IGE--DAFGYNIP--NWLLNRALEARAAELP 123 (386)
T ss_pred -----------HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHH----CCC--CCCEEECC--HHHHHHHHHHHHHHCC
T ss_conf -----------8887514852269999689851137641035322----477--66321012--6999999999997189
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 303113156520001344301246898058708995067247415765654
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
..++..+.++.+..+++ .| .+ ...+|+ .++|+-||-|-|.-..+
T Consensus 124 ~~~~~~~~~~~~~~~~~-~v---~v-~~~dg~--~i~a~llIgADG~~S~v 167 (386)
T PRK07494 124 NIDRFDDEAESVRPRGD-EV---TV-TLADGT--TLSARLVVAADGRNSPA 167 (386)
T ss_pred CEEEECCCEEEEEECCC-EE---EE-EECCCC--EEEEEEEEEECCCCCCC
T ss_conf 97997770689996698-48---99-978996--99986999905888743
No 155
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.88 E-value=4.2e-07 Score=65.03 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=50.2
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
--|-|||||.|||+||..++..|.+|.|.|+.+..+ |+.. ...|+ |.-..+.+.
T Consensus 440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~G--------G~L~---yGIP~--------------fRLPk~iv~- 493 (760)
T PRK12778 440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIG--------GVLK---YGIPE--------------FRLPNKIVD- 493 (760)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--------CEEE---ECCCC--------------CCCCHHHHH-
T ss_conf 989998977899999999997799069980588889--------7576---54861--------------108789999-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9998899999999869981327
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRN 119 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~ 119 (611)
..|++|.++||.|..+
T Consensus 494 ------~eI~~l~~lGV~~~~n 509 (760)
T PRK12778 494 ------VEIENLVKMGVTFEKD 509 (760)
T ss_pred ------HHHHHHHHCCCEEECC
T ss_conf ------9999998649799899
No 156
>KOG1298 consensus
Probab=98.87 E-value=2.1e-08 Score=73.50 Aligned_cols=189 Identities=21% Similarity=0.225 Sum_probs=115.4
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
-+..+||||||+|.+|..-|..+++.|.+|.|||+.-. .|++.+-+.+..|.++.-.+
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~----------------------EPdRivGEllQPGG~~~L~~ 99 (509)
T KOG1298 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS----------------------EPDRIVGELLQPGGYLALSK 99 (509)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCC----------------------CCHHHHHHHCCCCHHHHHHH
T ss_conf 68754479988862278999998507857999963455----------------------61678877608506689987
Q ss_pred HHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CC
Q ss_conf 9999999889999999986---9981327998551001464114567876564079866654266789999998731-23
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHY---GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NA 169 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~---Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv 169 (611)
+ =. .++++.++.+ |...- .+|+-..-+|+- ..+. ....-|..|. |+ .++.|.+++... +|
T Consensus 100 L---Gl---~Dcve~IDAQ~v~Gy~if--k~gk~v~~pyP~--~~f~-~d~~GrsFhn----GR-Fvq~lR~ka~slpNV 163 (509)
T KOG1298 100 L---GL---EDCVEGIDAQRVTGYAIF--KDGKEVDLPYPL--KNFP-SDPSGRSFHN----GR-FVQRLRKKAASLPNV 163 (509)
T ss_pred H---CH---HHHHHCCCCEEEEEEEEE--ECCCEEECCCCC--CCCC-CCCCCCEEEC----CH-HHHHHHHHHHCCCCE
T ss_conf 0---87---877632022375226998--479355335777--6788-8743201223----69-999999987248970
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCC-CEECCHHHHHHHHHCCCCCCCC
Q ss_conf 031131565200013443012468980587089950672474157656543342106-4014448878875136533332
Q gi|254781043|r 170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSA-HTCTGDGAGMVARAGLPLQDME 248 (611)
Q Consensus 170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~-~~~tGdG~~mA~~aGa~l~~mE 248 (611)
++- +-.+.+|+.| +|.|.||.-.+...++ ....|.-+|+|-|=|.++=+ +.++ ...+ ..-+-.|-.+.|-+
T Consensus 164 ~~e-eGtV~sLlee-~gvvkGV~yk~k~gee-~~~~ApLTvVCDGcfSnlRr-sL~~~~v~~----V~S~fVG~vl~N~~ 235 (509)
T KOG1298 164 RLE-EGTVKSLLEE-EGVVKGVTYKNKEGEE-VEAFAPLTVVCDGCFSNLRR-SLCDPKVEE----VPSYFVGLVLKNCR 235 (509)
T ss_pred EEE-EEEHHHHHHC-CCEEEEEEEECCCCCE-EEEECCEEEEECCHHHHHHH-HHCCCCCCC----CCHHEEEEEECCCC
T ss_conf 886-1027878731-6859758986278855-78735558994125688898-744876453----30231244522788
No 157
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.87 E-value=2.2e-07 Score=66.84 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=79.5
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|-+++||+|||+|++|+.+|+.+++.|.+|+|||+..+....+... ..=..++. +.| ...++++ ++- +.
T Consensus 1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~-d~R~~al~---~~s-~~~L~~l-----G~~-~~ 69 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQLPEEELNELP-DVRVSALS---RAS-EHILRNV-----GAW-QG 69 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCEEEEEC---HHH-HHHHHHC-----CCH-HH
T ss_conf 9998768999915899999999985899789993799863446789-86588878---999-9999987-----985-55
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-
Q ss_conf 999999988999999998699813------2799855100146411456787656407986665426678999999873-
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFS------RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK- 166 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~------r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~- 166 (611)
+. .....|+. .+..+.+. |.. .....+..-+.-. -..+...|.+++.+
T Consensus 70 i~--------------~~~~~p~~~~~v~~~~~~~~i~---~~~------~~~~~~~lg~iv~--~~~l~~~L~~~~~~~ 124 (405)
T PRK08850 70 IE--------------ARRAAPYTAMEVWEQDSFARIE---FDA------ESMAQPDLGHIVE--NRVIQLALLEQIQKQ 124 (405)
T ss_pred HH--------------HHCCCCEEEEEEEECCCCCEEC---CCH------HHCCCCCCCHHHH--HHHHHHHHHHHHHCC
T ss_conf 67--------------6237851258998479874312---474------4417854212464--499999999999738
Q ss_pred CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 123031131565200013443012468980587089950672474157656
Q gi|254781043|r 167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+|+++..+.+..+-.+++ .+ . ....+|+ .+.|+-||-|-|+-.
T Consensus 125 ~~v~~~~~~~~~~~~~~~~-~~---~-v~~~~g~--~i~a~llVgaDG~~S 168 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGES-EA---W-LTLDNGQ--ALTAKLVVGADGANS 168 (405)
T ss_pred CCCEEECCCEEEEEEECCC-CE---E-EEECCCC--EEEEEEEEEECCCCH
T ss_conf 9919973753556761797-15---9-9977998--887508999169873
No 158
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.87 E-value=4.5e-07 Score=64.82 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=86.7
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 31058898996899999999998898299998689885--2104116534251378999999999998998458877999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR--SHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~--g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
|.++|+|||+|.+||+.|+.++.+|.+|+|||+.+... +... | | ++ ...+. ++++. -|+.
T Consensus 1 mrt~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~~~~~v~~~~R-A--~---~l---~~~tl-----ell~~-~Gl~--- 62 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVLGRIR-A--G---VL---EQGTV-----DLLRE-AGVG--- 62 (392)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-E--E---EE---CHHHH-----HHHHH-CCCH---
T ss_conf 99889999977999999999997799889997689977678876-5--3---10---88999-----99998-5988---
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 999999988999999998699813---27998551001464114567876564079866654266789999998731230
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFS---RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAE 170 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~---r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~ 170 (611)
+.|.+-|.+.. ..-+|+.....|... ..+. +...+ . -.++.+.|.+...+.|++
T Consensus 63 -------------~rl~~~g~~~~g~~l~~~g~~~rid~~~l----~~g~--~~~~y--~--Q~ev~~~L~~a~~~~g~~ 119 (392)
T PRK08243 63 -------------ERMDREGLVHDGIELAFDGRRHRIDLTEL----TGGR--SVTVY--G--QTEVTRDLMAAREAAGGP 119 (392)
T ss_pred -------------HHHHHCCCCCCCEEEEECCEEEEECCCCC----CCCC--CEEEC--C--HHHHHHHHHHHHHHCCCE
T ss_conf -------------78974377356439998997766055446----8896--10335--8--189999999999976997
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 31131565200013443012468980587089950672474157656
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
++.++..+.+ .+.++....+.. ..+|+.+.++|+-||=|-|+-+
T Consensus 120 i~~~~~~v~~-~d~~~~~~~V~~--~~dG~~~~l~a~yvVGcDG~~S 163 (392)
T PRK08243 120 IVFEASDVAL-HDFDGDRPYVTY--TKDGETHRIDCDFIAGCDGFHG 163 (392)
T ss_pred EEEEEEEEEE-EECCCCCEEEEE--ECCCCEEEEEEEEEEECCCCCC
T ss_conf 9990599999-956998259999--4499379999846751688987
No 159
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.87 E-value=5.2e-09 Score=77.51 Aligned_cols=189 Identities=25% Similarity=0.309 Sum_probs=104.6
Q ss_pred EEEECEEEECCCHHHHHHHHHHH-HCCC-CEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 23105889899689999999999-8898-299998689885210411653425137899999999999899845887799
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMA-EKGF-KTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDV 92 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~-e~G~-~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~ 92 (611)
+.+|||||||+|.=||..|.=+| +.|. +|.||||+-++.||+.--..=| =.+. .-+.|.. +++-.+|-=.|| .+
T Consensus 28 K~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTiv-RSNY-l~p~s~~-~Ye~a~kLweGL-s~ 103 (407)
T TIGR01373 28 KPEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIV-RSNY-LYPESAE-LYEHAMKLWEGL-SQ 103 (407)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEE-EEEC-CCCCCHH-HHHHHHHHHHCH-HH
T ss_conf 885467888688606899999886469406899850621688664342146-5410-2645223-788898886120-01
Q ss_pred HHHH----------HHHHHHHHHHHHHHH-------CCCC--------------C-CCCCCCCEEEEC-CCCCCCCCCCC
Q ss_conf 9999----------999988999999998-------6998--------------1-327998551001-46411456787
Q gi|254781043|r 93 DAIQ----------YLAMEAPQSVYELEH-------YGVP--------------F-SRNEAGKIYQRP-FGGHMQNYGEG 139 (611)
Q Consensus 93 ~lv~----------~~~~~a~~~i~~Le~-------~Gv~--------------f-~r~~~G~~~~~~-~gg~~~~~~~g 139 (611)
||-+ .|| |+..-++-+++ .||. + +-..|-.+ | +||..+...
T Consensus 104 dLNYNvM~SqRG~~nL~-H~~~~~~~~~R~v~A~r~~GvDaELl~~~~v~~~~P~ld~s~daRf---Pv~Gg~~QrRg-- 177 (407)
T TIGR01373 104 DLNYNVMFSQRGVLNLA-HSTADMDDYARRVNAMRLNGVDAELLSPEQVKRLIPILDFSKDARF---PVVGGLLQRRG-- 177 (407)
T ss_pred HCCHHHHHHHHHHHHHC-CCHHHHHHHCCCEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCCCC---CCCCCCHHCCC--
T ss_conf 20200112133234321-8887876431410011103646320687899961881128888886---30054001378--
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 65640798666542667899999987312303113156520001344301246898058708995067247415765654
Q gi|254781043|r 140 PPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 140 ~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
. +.|--.+++ | -.+.+-+.||+|+.+|++|+++..++|+|.||.. .-| .|.|+.|=+|+=|-
T Consensus 178 G-taRHDAVAW--G------YARgAd~~GVdiIqncEvTg~~~~~~grv~GV~T---~RG---~IgA~kvgva~AG~--- 239 (407)
T TIGR01373 178 G-TARHDAVAW--G------YARGADARGVDIIQNCEVTGFIRRENGRVIGVET---TRG---FIGAKKVGVAVAGN--- 239 (407)
T ss_pred C-CEEEHHHHH--H------HHHHHHHCCCEEEECCCCCCEEEECCCEEEEEEC---CCC---CCCCEEEEEEEECC---
T ss_conf 7-102101222--1------4642300584032223202316506875886544---874---10103788887177---
Q ss_pred CCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf 3342106401444887887513653
Q gi|254781043|r 220 YFSATSAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 220 y~~~t~~~~~tGdG~~mA~~aGa~l 244 (611)
.-.||-.||.+|
T Consensus 240 -------------ss~~a~~AG~rl 251 (407)
T TIGR01373 240 -------------SSVVAELAGFRL 251 (407)
T ss_pred -------------HHHHHHHCCCCC
T ss_conf -------------589897637426
No 160
>PRK11445 putative oxidoreductase; Provisional
Probab=98.85 E-value=2.4e-07 Score=66.61 Aligned_cols=157 Identities=24% Similarity=0.298 Sum_probs=76.9
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--HHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 1058898996899999999998898299998689885210--41165342513789999999999989984588779999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHT--VAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s--~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
.|||+|||+|.||.+||-.+++. .+|+||||....+... -..+|+| ++...+. +. +-+-.+ -+++
T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCGG~I-------~~~a~~~-l~---~~~~~i-p~~~ 67 (348)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLL-------APDAQKS-FA---KDGLTL-PKDV 67 (348)
T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCC-------CHHHHHH-HH---HCCCCC-CHHH
T ss_conf 99799989788999999998268-9889998135656799988786871-------9728999-87---506788-5665
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
+ ++ +. + ..+. ..+.+..+. ...++.+..-++ ..+-..|.+.+ +.+++++.+
T Consensus 68 l---~~--~~-i-----~~~~-~~~~~~~~~--------------~~~~~~yi~~~R--~~fD~~L~~~a-~~~~~~~~~ 118 (348)
T PRK11445 68 I---AN--PQ-I-----FAVK-TIDLANSLT--------------RNYQRSYINIDR--HKFDLWLKSLI-PASVEVYHN 118 (348)
T ss_pred C---CC--CE-E-----EEEE-ECCCCCCCC--------------CCCCCEEEECCH--HHHHHHHHHHH-HHCCCEEEE
T ss_conf 0---15--53-7-----8766-427877522--------------135660760559--99999999988-728738971
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 156520001344301246898058708995067247415765654
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
..+.++..+++| +. ++ + ..+|+...+.||-||=|.|--+.+
T Consensus 119 ~~~~~i~~~~~g-~~-v~-~-~~~g~~~~~~a~~iIGADGanS~V 159 (348)
T PRK11445 119 SLCRKIWREDDG-YH-VI-F-RADGWEQHITARYLVGADGANSMV 159 (348)
T ss_pred EEEEEEEECCCE-EE-EE-E-EECCEEEEEEECEEEECCCCCCHH
T ss_conf 489999983980-79-99-9-718907898737899898977588
No 161
>PRK07538 hypothetical protein; Provisional
Probab=98.84 E-value=3.3e-07 Score=65.76 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=85.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
||+|||+|++||++|+.++++|.+|.|+|+.+..+.. +-||+. .+...+ .+.. -|+
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~----G~gI~l-----~p~a~~-----~L~~-lGl--------- 57 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPELRPL----GVGINL-----LPHAVR-----ELAE-LGL--------- 57 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC----CEEEEE-----CHHHHH-----HHHH-CCC---------
T ss_conf 8999990589999999999789998999369988878----528751-----879999-----9998-789---------
Q ss_pred HHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHH-CC-CEE
Q ss_conf 9988999999998699813----279985510014641145678765640-7986665426678999999873-12-303
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQR-TCAAADRTGHAILHTLYGQALK-NN-AEF 171 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R-~~~~~d~tG~~i~~~L~~~~~~-~g-v~i 171 (611)
.+.|.+.|++.. .+.+|+.......+ ...+..+|. .+| =..+...|++.+.+ .| ..+
T Consensus 58 -------~~~l~~~g~~~~~~~~~~~~G~~i~~~~~g----~~~g~~~p~~~i~-----R~~L~~~L~~~~~e~lg~~~i 121 (413)
T PRK07538 58 -------LEALDAVGIRTRELVFFNRHGQRIWSEPRG----LAAGYDWPQYSIH-----RGELQMLLLDAVRERLGPDAV 121 (413)
T ss_pred -------HHHHHHHCCCCCEEEEECCCCCEEEECCCC----CCCCCCCCEEEEC-----HHHHHHHHHHHHHHHCCCCEE
T ss_conf -------789986277763279996999898733466----4457888525650-----999999999999975699689
Q ss_pred ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 11315652000134430124689805870899506724741576565
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
..++.++++..++++ |. +...+..++....+.|+-||=|-|.-+.
T Consensus 122 ~~g~~v~~~~~~~~~-v~-~~~~~~~~~~~~~~~adllVGADGi~S~ 166 (413)
T PRK07538 122 RTGHRVVGFEQDAGV-TV-VFLGDRAGGDLVSVRADVLIGADGIHSA 166 (413)
T ss_pred EECCEEEEEEECCCC-EE-EEEECCCCCCCEEEEECEEEECCCCCCH
T ss_conf 967789898874995-29-9997157887239984889988898752
No 162
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.84 E-value=5.7e-08 Score=70.71 Aligned_cols=108 Identities=28% Similarity=0.285 Sum_probs=67.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
||+|||+|.|||+||+.+++.|.+|+|+|+.. +..+..+++..... ...
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~----~~~~~~~~i~~~~~-----------------~~~---------- 49 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEG----GTCYNRGCIPKKLL-----------------LEA---------- 49 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCEEEECCCCCCCC-----------------CCC----------
T ss_conf 99999976999999999984999799993799----93575577477116-----------------454----------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEE
Q ss_conf 99889999999986998132799855100146411456787656407986665426678999999873123031131565
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFAL 178 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~ 178 (611)
.....+.....++..+.+++++.++.++
T Consensus 50 ----------------------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 77 (277)
T pfam07992 50 ----------------------------------------------------AEVGKLDLRPLEQYKDEGIEVLLGTGVT 77 (277)
T ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf ----------------------------------------------------3314561899999987597999687799
Q ss_pred EEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 2000134430124689805870899506724741576565
Q gi|254781043|r 179 DLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 179 ~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+-.+ ++. + ...+|+ .+.++.||||||...+
T Consensus 78 ~i~~~--~~~--v---~~~~g~--~~~~d~lviAtG~~~~ 108 (277)
T pfam07992 78 AIDKA--GKK--V---TLDDGK--ELTYDKLVIATGARPR 108 (277)
T ss_pred EEECC--CCE--E---EECCCC--EEECCEEEECCCCCCC
T ss_conf 99789--998--9---987893--9985999998799862
No 163
>PRK06996 hypothetical protein; Provisional
Probab=98.84 E-value=2.7e-07 Score=66.29 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCCCEEEEEECEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 344133231058898996899999999998----8982999986898852104116534251378999999999998998
Q gi|254781043|r 9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAE----KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIK 84 (611)
Q Consensus 9 ~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~ 84 (611)
+.-+....+|||+|||+|..|+..|+.+++ +|.+|.++|+.+...... |+ +
T Consensus 3 ~~~~m~~~d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~----------------d~---------R 57 (397)
T PRK06996 3 TAASMAAPDYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASAN----------------DP---------R 57 (397)
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC----------------CC---------C
T ss_conf 7899999998889999279999999999601687896699976898666789----------------99---------3
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CEE--EECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 45887799999999998899999999869981327998--551--00146411456787656407986665426678999
Q gi|254781043|r 85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAG--KIY--QRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTL 160 (611)
Q Consensus 85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G--~~~--~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L 160 (611)
+- .+ ++..++.|+++|+ |...... .+. .+...|+..........+..-+.-. -..+...|
T Consensus 58 a~-al------------~~~s~~~L~~lG~-w~~~~~~i~~~~v~~~~~~g~~~~~~~~~~~~~lg~iv~--~~~l~~~L 121 (397)
T PRK06996 58 AI-AL------------SHGSRVLLETLGA-WPADATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVR--YGSLVAAL 121 (397)
T ss_pred EE-EE------------CHHHHHHHHHCCC-CCCCCCCEEEEEEEECCCCCCEECCHHHCCCCCCCCCCC--HHHHHHHH
T ss_conf 99-97------------5789999998799-845687425999940577662112654428852235443--79999999
Q ss_pred HHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 161 YGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 161 ~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+++.+.++.++..+.+..+..+.++ |. +. .. ..+....++|+-||-|-|+-.
T Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~~~~-v~-~~-~~-~~~~~~~i~a~llVgaDG~~S 174 (397)
T PRK06996 122 ARAVRGTGVTWLTSTTARAPAQDADG-VT-LA-LD-TPQGARTLRARIAVQAEGGLF 174 (397)
T ss_pred HHHHHHCCCEEEECCCEEEEEECCCC-EE-EE-EC-CCCCCEEEEECEEEECCCCCH
T ss_conf 99997489879834451457763674-58-99-60-599865998189999599981
No 164
>KOG2311 consensus
Probab=98.82 E-value=1.6e-08 Score=74.25 Aligned_cols=161 Identities=29% Similarity=0.400 Sum_probs=86.8
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCCCC
Q ss_conf 231058898996899999999998898299998689--88521041165342513789999999999989984-588779
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF--PTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKG-SDWLGD 91 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~--~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~-g~~l~d 91 (611)
+-.|||+|||+|-||+-||.+|++-|++.+|+++.. ++.-+|.-+-|||.- +..- +--|.+-+ -...||
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigK--g~Lm------rEVDALdGl~~rvcD 97 (679)
T KOG2311 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGK--GHLM------REVDALDGLCSRVCD 97 (679)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC--CEEE------EEEHHHCCHHHHHHH
T ss_conf 77555799878752048889887418734786325561013445765587665--3024------431200256765411
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHHC--
Q ss_conf 999999999889999999986998132799855100146411456787656--4079866654266789999998731--
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALKN-- 167 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~~-- 167 (611)
+..+.+ .-|-. ..|+.+ +| .+|-+.|+++..+.
T Consensus 98 ~s~vq~---------k~LNr-------------------------s~GPAVwg~R---------AQiDR~lYkk~MQkei 134 (679)
T KOG2311 98 QSGVQY---------KVLNR-------------------------SKGPAVWGLR---------AQIDRKLYKKNMQKEI 134 (679)
T ss_pred HHHHHH---------HHHHC-------------------------CCCCCCCCHH---------HHHHHHHHHHHHHHHH
T ss_conf 555568---------77502-------------------------5797223708---------7651999999999875
Q ss_pred ----CCEEECCCEEEEEEECCCC----CCEEEEEEEECCCEEEEECCCCEEEECCCCC--CCCC-CCCCCCEECCH
Q ss_conf ----2303113156520001344----3012468980587089950672474157656--5433-42106401444
Q gi|254781043|r 168 ----NAEFFIEYFALDLIINSEG----CCVGVVAWQLETGEIHRFSAKLVVLATGGYG--RAYF-SATSAHTCTGD 232 (611)
Q Consensus 168 ----gv~i~~~~~~~~Li~d~dG----~V~Gav~~~~~~G~~~~i~AkaVILATGG~~--~ly~-~~t~~~~~tGd 232 (611)
+.++++ -.+.+||+.+.+ +|.|++. .+|. +|.|+.|||.||-|= .+|- ..+-|.+-.|+
T Consensus 135 ~st~nL~ire-~~V~dliv~~~~~~~~~~~gV~l---~dgt--~v~a~~VilTTGTFL~~~I~iGlk~~pAGRiGe 204 (679)
T KOG2311 135 SSTPNLEIRE-GAVADLIVEDPDDGHCVVSGVVL---VDGT--VVYAESVILTTGTFLRGQINIGLKTHPAGRIGE 204 (679)
T ss_pred CCCCCCHHHH-HHHHHEEECCCCCCCEEEEEEEE---ECCC--EECCCEEEEEECCCEEEEEEECCCCCCCCCCCC
T ss_conf 2687600122-00133363168887347778997---5572--731434999613212237850431144744467
No 165
>PRK13984 putative oxidoreductase; Provisional
Probab=98.82 E-value=4.4e-07 Score=64.93 Aligned_cols=69 Identities=23% Similarity=0.371 Sum_probs=50.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|-|||||.|||+||..+++.|.+|.|.||.+..+| + +....|+ |.-..+.+.
T Consensus 285 KVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GG--------l---L~yGIP~--------------fRLpk~vv~-- 337 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGG--------V---MRYGIPS--------------YRLPDEALD-- 337 (604)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCC--------E---EEECCCC--------------CCCCHHHHH--
T ss_conf 899989868999999999986986899745677897--------2---3315872--------------228789999--
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 998899999999869981327
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRN 119 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~ 119 (611)
..|++|+++||.|..+
T Consensus 338 -----rei~~i~~~GV~f~~n 353 (604)
T PRK13984 338 -----KDIAFIEALGVKIHTN 353 (604)
T ss_pred -----HHHHHHHHCCCEEECC
T ss_conf -----9999999729899768
No 166
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.82 E-value=1.5e-08 Score=74.51 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=29.6
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf 1058898996899999999998898--299998689
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF--KTACITKVF 50 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~--~V~lieK~~ 50 (611)
+.+|+|||+|.||++||.++.+.|. +|+|+++.+
T Consensus 3 ~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~ 38 (400)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (400)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 672999977599999999998069499799998999
No 167
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=98.81 E-value=2.6e-07 Score=66.36 Aligned_cols=311 Identities=20% Similarity=0.209 Sum_probs=151.9
Q ss_pred CEEEECCCHHHHHHHHHHH--HCCCCEEEEECCCC-CCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 5889899689999999999--88982999986898-85210411653425137899999999999899845887799999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMA--EKGFKTACITKVFP-TRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~--e~G~~V~lieK~~~-~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
|+||||||.||+.-|++++ +.|++|.+|+-.+. ..++-.|. + - .|+ +.+. +..++
T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~tyg---~---w----~~d----l~~~--------~hawl 58 (419)
T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNNTYG---V---W----DDD----LSDL--------GHAWL 58 (419)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC---C---C----CCC----HHHH--------HHHHH
T ss_conf 97887477578999999997505871898678887677687442---1---2----222----3278--------99999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEECC
Q ss_conf 999998899999999869981327998551001464114567876564079866654266789999998731-2303113
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIE 174 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~~ 174 (611)
..++++ .|. ++ +..+ |. ......+..|.+. +-..+...|.+++.+. |+..+..
T Consensus 59 ~~l~~~-------------~W~---~~-~~y~-~~--~~~~~L~~~Y~~~------~~~~L~~~l~~~~~~~sG~~~~~~ 112 (419)
T TIGR01790 59 ADLVEH-------------RWS---DA-YEYR-FP--EEPIKLGRAYGSV------DRAQLHEELLQKCPEGSGVLWLEA 112 (419)
T ss_pred HHHHCC-------------CCC---CE-EEEC-CC--CCCHHCCCCCEEE------CHHHHHHHHHHHHHCCCCEEEEHH
T ss_conf 988416-------------389---80-6883-87--3430105665000------158999999986200376133013
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC-CCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1565200013443012468980587089950672474157656-543342106401444887887513653333222328
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG-RAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~-~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfh 253 (611)
.+..+..+ .+..-.+. ...|+ +|+|+.||-|||.-. .++.+...+ . .-|+-.||-.=++|.+ +
T Consensus 113 -ka~~~~~~---~~~~~~v~-~~~g~--~i~Ar~V~Da~G~~~G~l~~~~~~~-~--~~g~Q~ayG~~~rl~~------~ 176 (419)
T TIGR01790 113 -KAIKVEAD---AVSLSLVE-CAGGQ--RIQARLVIDARGFKPGKLVQYEKAS-L--AVGYQAAYGVEVRLSE------P 176 (419)
T ss_pred -HHHHHHHH---HCCCCEEE-CCCCE--EEEEEEEEECCCCCCCCEECCCCCC-C--CCEEEEEEEEEEEEEC------C
T ss_conf -56666544---05511144-28973--7840078832577765101125667-6--4212131327788724------7
Q ss_pred CCCCCCCEEECCCCCCCCCEEEE---ECCCCC-----CCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 88442201430456655780898---326861-----2554076510047520111568899881788888887468861
Q gi|254781043|r 254 PTGIYGAGCLITEGARGEGGYLV---NSKGER-----FMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYL 325 (611)
Q Consensus 254 Pt~~~~~~~l~~~~~rg~G~~l~---n~~Ger-----f~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~ 325 (611)
|.++..+ ++|-.-+ ..+- |.++.| |+ ..+.|.+-++ +.| +..|.|-
T Consensus 177 P~~~~~~-V~MD~r~----~~~~~~~~l~~~~sripTFl-----YampL~~~~~-----f~E-----------eT~l~~~ 230 (419)
T TIGR01790 177 PHGPSSM-VIMDYRV----DQLKDAPELKGYRSRIPTFL-----YAMPLSSDRV-----FIE-----------ETSLAAR 230 (419)
T ss_pred CCCCCCC-EEECCCH----HHHCCCCCCCCCCCCCCCEE-----EECCCCCCEE-----EEE-----------EEEECCC
T ss_conf 8799986-5831152----52357853235566676156-----6305899647-----888-----------5100268
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r 326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH 405 (611)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h 405 (611)
-.++.+.|++|+- ..... .|+.+..- .|.=.|=|++...+- ..+-..+-.+||+-+.|-+| +=+|
T Consensus 231 p~l~~~~L~~rl~---~rl~~-~G~~~~~i-------~~eE~~~lP~~~~~p---~sa~~~~q~~PGv~~~G~aA-g~vH 295 (419)
T TIGR01790 231 PALPRDRLKQRLL---ARLAA-QGWQVKEI-------EEEEQGLLPVNLPLP---SSAYVLEQRIPGVVAFGAAA-GMVH 295 (419)
T ss_pred CCCCHHHHHHHHH---HHHHH-CCCCCCCH-------HHCCHHHCCCCCCCC---CCCCCCCCCCCCHHHCCCCC-CCCC
T ss_conf 9989899999999---99984-68823400-------320011114355788---52220689987033100133-4557
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 64304764322222232156775566542026
Q gi|254781043|r 406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSS 437 (611)
Q Consensus 406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~ 437 (611)
...|.++..++--.-..+...|+....+.
T Consensus 296 ---P~TGY~v~~al~~Ap~~A~~~A~~L~~~~ 324 (419)
T TIGR01790 296 ---PATGYSVARALSEAPKLAAAIAQALALSS 324 (419)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ---75111489999987888999997413333
No 168
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.80 E-value=3.5e-07 Score=65.52 Aligned_cols=151 Identities=26% Similarity=0.345 Sum_probs=77.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEE-ECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1058898996899999999998898299998689885210411653425-137899999999999899845887799999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAA-SLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a-~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
+|||+|||+|++|+.+|+.++++|.+|+|+|+..+..-... ..-++.+ ++ .
T Consensus 3 ~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~p~~~~~~-~~~~~R~~al---~------------------------ 54 (384)
T PRK08849 3 KYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFEPKAFEAS-QPMDIRVSAI---S------------------------ 54 (384)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCCCEEEEEE---C------------------------
T ss_conf 18999999249999999999957995999968998766666-7877056786---7------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCC----------CCCCCC---CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 9999988999999998699----------813279---985510014641145678765640798666542667899999
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGV----------PFSRNE---AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYG 162 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv----------~f~r~~---~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~ 162 (611)
+..++.|+++|+ |+.+-+ .+.. ...|.. .....++.-+.-. -..+...|.+
T Consensus 55 -------~~s~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~~-~~~f~~------~~~~~~~lg~iv~--~~~l~~~L~~ 118 (384)
T PRK08849 55 -------QNSVDLLESLGAWSSIVAMRVCPYKRLETWEHPEC-RTRFHS------DELNLDQLGYIVE--NRLIQLGLWQ 118 (384)
T ss_pred -------HHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCC-CCCCCH------HHCCCCCCCCHHH--HHHHHHHHHH
T ss_conf -------99999999879864687614786002553017764-412485------3438630000343--7999999999
Q ss_pred HHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 9873-1230311315652000134430124689805870899506724741576565
Q gi|254781043|r 163 QALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 163 ~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
++.+ .+|+++....+.++-.++++ + .....+|+ .++|+-||-|-|.-..
T Consensus 119 ~~~~~~~i~~~~~~~v~~~~~~~~~-~----~v~l~~g~--~i~a~llIgADG~~S~ 168 (384)
T PRK08849 119 QFAQYPNLTLLCPEKLKDLEFSAEG-N----RVTLESGA--EIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHCCCEEEECCCEEEEEEECCCE-E----EEEECCCC--EEEEEEEEEEECCCHH
T ss_conf 9984899199838778898853881-4----99978999--9985479992078646
No 169
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.78 E-value=8.5e-08 Score=69.58 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=27.7
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 10588989968999999999988982999986898
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
.|||+|||+|.||..+|.++ .|++|+||||..+
T Consensus 1 ~YDviVIG~Gpgg~~~a~~~--aG~kValVE~~~~ 33 (453)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTF 33 (453)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCCC
T ss_conf 97789989888999999998--2992999978997
No 170
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.77 E-value=6e-07 Score=64.01 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCC-EEEEECCCCEEEECCCCCC
Q ss_conf 873123031131565200013443012468980587-0899506724741576565
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG-EIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G-~~~~i~AkaVILATGG~~~ 218 (611)
..+.+.++..++.+.+|+.+. ++++|+.......+ .-+.+.++-|||++|+.+.
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred HHCCCCEEECCCEEEEEEEEC-CEEEEEEEEECCCCCEEEEECCCEEEECCCCCCC
T ss_conf 508983896378899999989-8689999996898633688517879985676379
No 171
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=98.77 E-value=3e-07 Score=65.96 Aligned_cols=146 Identities=23% Similarity=0.323 Sum_probs=85.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
.||.||||+|..||.||-+||+.|++|+|++-..|..-++.|.=||..+-.+=. | +...
T Consensus 2 dyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCi-P--------------------KKLM 60 (513)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCI-P--------------------KKLM 60 (513)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCC-C--------------------CHHH
T ss_conf 642799858973468999998609918999633569888214767535750554-8--------------------3567
Q ss_pred HHHHHHHHHHH-HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-----------
Q ss_conf 99998899999-999869981327998551001464114567876564079866654266789999998-----------
Q gi|254781043|r 97 YLAMEAPQSVY-ELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA----------- 164 (611)
Q Consensus 97 ~~~~~a~~~i~-~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~----------- 164 (611)
-.|-..++.++ .-..+|..|.-++.=+ |.|.| |..+..+++
T Consensus 61 HqAa~~G~~lklds~~YGWn~~~~ek~K----------------HDW~~-----------l~~~Vq~hi~slNw~Yrv~L 113 (513)
T TIGR01438 61 HQAALLGKALKLDSKKYGWNVEDQEKVK----------------HDWEK-----------LSKAVQDHIKSLNWSYRVAL 113 (513)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCC----------------CCHHH-----------HHHHHHHHHHHCCHHEEEEH
T ss_conf 8888876887553565188853664322----------------23789-----------99988645554003200001
Q ss_pred HHCCCEEECCCEEEEEEECCCCCCEEEEEEEE-CCCEEEEECCCCEEEECCC
Q ss_conf 73123031131565200013443012468980-5870899506724741576
Q gi|254781043|r 165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQL-ETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~-~~G~~~~i~AkaVILATGG 215 (611)
++..|+.++-. -+ ++|.+ +++ +.+.+. ..++-..+.|+.|++|||=
T Consensus 114 r~kKv~Y~Nay--ae-fvdk~-ki~-i~~t~kGd~~ke~~~sa~~~lIaTG~ 160 (513)
T TIGR01438 114 REKKVKYINAY--AE-FVDKD-KIV-IKATDKGDKKKEEILSAKRVLIATGL 160 (513)
T ss_pred HCCCCEEEEEE--EE-EECCC-EEE-EEEEECCCCCCCEEEECCEEEEECCC
T ss_conf 01540266300--24-42784-689-99860678763204503636980478
No 172
>PRK06847 hypothetical protein; Provisional
Probab=98.74 E-value=6.3e-07 Score=63.89 Aligned_cols=155 Identities=18% Similarity=0.190 Sum_probs=84.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
.|+|||+|++||++|+.++++|.+|+|+|+.+..+... .||. + .+.+. ++++. -++
T Consensus 6 kV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~g----~gi~--l---~~~~~-----~~L~~-lGl--------- 61 (375)
T PRK06847 6 KVLIVGGGIGGMSAAIALRKAGISVDLVEIDPEWRPYG----AGIT--L---QGNTL-----RALKE-LGV--------- 61 (375)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----EEEE--E---CHHHH-----HHHHH-CCC---------
T ss_conf 79999966899999999996799999990899988886----0898--8---98999-----99998-799---------
Q ss_pred HHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9988999999998699813----279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
.+.+.+.|.++. ++.+|....+... ....+..++..... .-..+.+.|.+.+.+.++++..+
T Consensus 62 -------~~~i~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~~~~~i---~r~~L~~~L~~~~~~~~~~v~~~ 127 (375)
T PRK06847 62 -------LDECLEHGFGFDGVDIFDPAGHLLAEVPT----PRVAGDDVPGGGGI---MRPTLARILADAARASGVDVRLG 127 (375)
T ss_pred -------HHHHHHHCCCCCEEEEEECCCCEEEEECC----HHHCCCCCCCEEEE---EHHHHHHHHHHHHHHCCCEEEEC
T ss_conf -------58999607885229999689988998343----12035667721277---09999999999898469979966
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 15652000134430124689805870899506724741576565
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+.++++-.+++ .| .+ ...+|+ .+.|+-||-|-|.-+.
T Consensus 128 ~~v~~i~~~~~-~v---~v-~~~dG~--~~~adllIGADG~~S~ 164 (375)
T PRK06847 128 TTVTAIEQDDD-GV---DV-TFTDGT--TGRYDLVVGADGVYSK 164 (375)
T ss_pred CEEEEEEECCC-EE---EE-EECCCC--EEEEEEEEECCCCCCH
T ss_conf 58978666498-58---99-985898--8998799985787627
No 173
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.74 E-value=1.3e-06 Score=61.91 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=81.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 105889899689999999999889---82999986898852104116534251378999999999998998458877999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G---~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
+|||+|||+|++|+++|+.+++.| .+|.|+|+.......... ..+=+.++ .+.|.+. +++ + |+
T Consensus 3 ~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~-~d~Ra~al---~~~s~~~-L~~-l----Gl---- 68 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPG-FDARAIAL---AAGTCQQ-LAR-L----GV---- 68 (395)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-CCCEEEEE---CHHHHHH-HHH-C----CC----
T ss_conf 189899993899999999999618899749999378854456888-77447888---8999999-998-7----99----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CC
Q ss_conf 99999998899999999869981327---998551001464114567876564079866654266789999998731-23
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRN---EAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NA 169 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~---~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv 169 (611)
.+.+...+.|+.+- +.|......+... ....+..-|.-. -..+...|.+.+.+. +|
T Consensus 69 ------------~~~l~~~~~pi~~i~v~d~~~~~~~~~~~~------~~~~~~lg~~v~--~~~l~~~L~~~l~~~~~v 128 (395)
T PRK05732 69 ------------WQALADCATPIRHIHVSDRGHAGFVRLDAE------DYGVDALGYVVE--LADVGQRLFALLDKAPGV 128 (395)
T ss_pred ------------HHHHHHHCCCCEEEEEEECCCCCCEECCHH------HCCCCCCCCEEE--HHHHHHHHHHHHHCCCCE
T ss_conf ------------288786276542899840686772105633------238765654323--699999999988408996
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 03113156520001344301246898058708995067247415765654
Q gi|254781043|r 170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
+++..+.++++..+.+ .|. + ...+|+ .+.|+-||-|-|.-..+
T Consensus 129 ~~~~~~~v~~i~~~~~-~v~---v-~l~~g~--~i~a~lvVgADG~~S~v 171 (395)
T PRK05732 129 TLHCPARVANVERTQD-GVR---V-TLDDGE--TLTARLLVAADGTHSAL 171 (395)
T ss_pred EEECCCEEEEEEECCC-CEE---E-EECCCC--EEEECEEEEECCCCHHH
T ss_conf 9976988999998289-279---9-987998--99837999928996254
No 174
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.74 E-value=2.4e-07 Score=66.68 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=29.0
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 310588989968999999999988982999986898
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
++|||+|||+|.+|..+|.+++ |.+|+||||..+
T Consensus 1 k~YDviVIGaGpgG~~~a~~~a--g~kValvEk~~~ 34 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPRFA--DKRIAIVEKGTF 34 (452)
T ss_pred CCCCEEEECCCHHHHHHHHHHC--CCEEEEEECCCC
T ss_conf 9476899998689999999982--990999978992
No 175
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=98.73 E-value=4.9e-07 Score=64.59 Aligned_cols=69 Identities=29% Similarity=0.458 Sum_probs=50.2
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
..-|-|||+|.|||++|-+.|+.|.+|.|.|-.+-.+ | ++.+..|+ +.-+.+.+.
T Consensus 142 ~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPG--------G---V~~YGIPe--------------fRLpKei~~ 196 (462)
T TIGR01316 142 KKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPG--------G---VLAYGIPE--------------FRLPKEIVE 196 (462)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCC--------C---EEEECCCC--------------CCCCHHHHH
T ss_conf 8779998468214688999974798699997148998--------5---67536888--------------548757889
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999988999999998699813
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFS 117 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~ 117 (611)
..|+.|+.+||.|-
T Consensus 197 -------~E~k~LkklGv~fr 210 (462)
T TIGR01316 197 -------TEVKKLKKLGVKFR 210 (462)
T ss_pred -------HHHHHHHHCCEEEE
T ss_conf -------88887632663799
No 176
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=98.72 E-value=4.9e-07 Score=64.59 Aligned_cols=151 Identities=25% Similarity=0.339 Sum_probs=88.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 5889899689999999999889-----82999986898852104116534251378999999999998998458877999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
||+|||||++|++.|++++..+ ++|+|||..+...........++ |. .
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~---------D~------------------R 53 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGF---------DN------------------R 53 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC---------CC------------------C
T ss_conf 96888473889999999841863124731799605211442211258765---------52------------------2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-----------------CCCCC------CEEEECCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 999999988999999998699813-----------------27998------5510014641145678765640798666
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFS-----------------RNEAG------KIYQRPFGGHMQNYGEGPPVQRTCAAAD 150 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~-----------------r~~~G------~~~~~~~gg~~~~~~~g~~~~R~~~~~d 150 (611)
+.. =++..+..|+++|| |+ ....| .+.+.. ... . + +.+-.-|.-.
T Consensus 54 -~~A---l~~~S~~~L~~lG~-W~~~~~~~~~p~~~~~V~D~~~~g~~~~P~~~~F~~---~~~--~-~-~~~~LG~~ve 121 (445)
T TIGR01988 54 -VSA---LSAASIRLLEKLGV-WDKIEPDRAQPIRDIHVSDGGSFGRAPHPAALHFDA---DEV--G-G-PAEALGYVVE 121 (445)
T ss_pred -EEE---HHHHHHHHHHHCCC-CHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECH---HHC--C-C-CCCCCCEEEC
T ss_conf -010---10799999986796-445201212632048887267888888863687443---441--7-8-8011236711
Q ss_pred CCCHHHHHHHHHHHHHCC---CEEECCCEEEEEEEC-----CCCCCEEEEEEEECCCEEEE---ECCCCEEEECCCCC
Q ss_conf 542667899999987312---303113156520001-----34430124689805870899---50672474157656
Q gi|254781043|r 151 RTGHAILHTLYGQALKNN---AEFFIEYFALDLIIN-----SEGCCVGVVAWQLETGEIHR---FSAKLVVLATGGYG 217 (611)
Q Consensus 151 ~tG~~i~~~L~~~~~~~g---v~i~~~~~~~~Li~d-----~dG~V~Gav~~~~~~G~~~~---i~AkaVILATGG~~ 217 (611)
=..|.++|++++.+.. |+++....+..+..+ .+ . +.+-+.+|+ + +.|+=||-|-|.-.
T Consensus 122 --n~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----v~~~L~~G~--~~~~l~a~LlvgADG~~S 190 (445)
T TIGR01988 122 --NRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSKNDSD-E----VELTLSDGR--QKLLLRARLLVGADGANS 190 (445)
T ss_pred --HHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCC-C----EEEEECCCC--EEEEEEECEEEEECCCCH
T ss_conf --88999999999996689647751672147740367756886-0----799970894--767898532787358652
No 177
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.70 E-value=2.7e-08 Score=72.80 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=36.1
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
Q ss_conf 105889899689999999999889829999868988521041
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVA 58 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~ 58 (611)
+|||+|||+|.||+.||+.|++.|.+|+||||....-|+++.
T Consensus 3 ~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCl 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 789899997889999999999789929999758998773245
No 178
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.70 E-value=2.4e-08 Score=73.16 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=37.0
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC
Q ss_conf 31058898996899999999998898299998689885210411
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA 59 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A 59 (611)
++|||+|||+|.||+.||+.|++.|.+|+||||....-|+++..
T Consensus 2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n 45 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCIN 45 (438)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEE
T ss_conf 95587999978899999999997889499994699876855477
No 179
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.69 E-value=1.2e-07 Score=68.50 Aligned_cols=64 Identities=25% Similarity=0.256 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 26678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
...+.-++.+.+.+.|+++++++.|++++.+ +|+|.||.+.|..+|+...|+||.||-|||-++
T Consensus 127 p~rl~~a~a~~A~~~Ga~i~~~~~V~~i~~~-~g~v~gv~v~d~~tg~~~~i~ak~VVNAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHHCCHHHHCCCEEEEEEEE-CCEEEEEEEEECCCCCEEEEEEEEEEECCCCCH
T ss_conf 7999999999999736564407368899988-999999999986889789999538997677356
No 180
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.69 E-value=2.7e-08 Score=72.81 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=34.7
Q ss_pred HHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+.+|+++.++.++++-.+ .+. +...+..+++...+.-...|||||.-..
T Consensus 69 ~~~~I~v~~~~~v~~Id~~--~k~--v~~~~~~~~~~~e~~YDkLviATGs~p~ 118 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE--RQT--VTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred HHCCCEEEECCEEEEECCC--CCE--EEEECCCCCCEEECCCCEEEEECCCCCC
T ss_conf 8779799927689998066--678--9995066674232134589996798887
No 181
>KOG1335 consensus
Probab=98.69 E-value=5.4e-07 Score=64.32 Aligned_cols=155 Identities=25% Similarity=0.327 Sum_probs=83.3
Q ss_pred CCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHH----HHHHHHH
Q ss_conf 534413323105889899689999999999889829999868988521041165342513789999999----9999899
Q gi|254781043|r 8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ----WHLYDTI 83 (611)
Q Consensus 8 ~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~----~~~~Dt~ 83 (611)
+..|...-.+|||+|||+|..|..|||.|++.|++.++|||-...+ +|+.--|-| | |.. .|++..+
T Consensus 30 ~r~fa~~~~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG-GTcLnvGcI--------P-SKALL~nSh~yh~~ 99 (506)
T KOG1335 30 KRSFASSANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG-GTCLNVGCI--------P-SKALLNNSHLYHEA 99 (506)
T ss_pred HHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCC-CEEEECCCC--------C-CHHHHHHHHHHHHH
T ss_conf 5565324666788998778725899999987154168873157536-545643633--------5-38876333789988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 84588779999999999889999999986998132799855100146411456787656407986665426678999999
Q gi|254781043|r 84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQ 163 (611)
Q Consensus 84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~ 163 (611)
++ +.+++.|...+ .-++.+..+-. +.+..-++|...+...
T Consensus 100 ----------------q~-----~~~~~rGi~vs---~~~~dl~~~~~----------------~k~n~vk~Lt~gi~~l 139 (506)
T KOG1335 100 ----------------QH-----EDFASRGIDVS---SVSLDLQAMMK----------------AKDNAVKQLTGGIENL 139 (506)
T ss_pred ----------------HH-----HHHHHCCCCCC---CEECCHHHHHH----------------HHHHHHHHHHHHHHHH
T ss_conf ----------------76-----68986093113---20047899998----------------7777899976689988
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf 873123031131565200013443012468980587089950672474157656543
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY 220 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly 220 (611)
..+.+|+++..+-. +++. .+|. ....+|+...|.||.+|+|||.--.-|
T Consensus 140 fkknkVt~~kG~gs---~~~p-~~V~----v~k~dg~~~ii~aKnIiiATGSeV~~~ 188 (506)
T KOG1335 140 FKKNKVTYVKGFGS---FLDP-NKVS----VKKIDGEDQIIKAKNIIIATGSEVTPF 188 (506)
T ss_pred HHHCCEEEEEEEEE---ECCC-CEEE----EECCCCCCEEEEEEEEEEECCCCCCCC
T ss_conf 76348389951376---5387-4688----853589733786316999617756778
No 182
>PRK08948 consensus
Probab=98.69 E-value=1.4e-06 Score=61.72 Aligned_cols=143 Identities=24% Similarity=0.323 Sum_probs=78.4
Q ss_pred ECEEEECCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 058898996899999999998---89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAE---KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e---~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
|||+|||+|++|++.|+.+++ .+.+|.|||+..+...... + .|+- + -.+
T Consensus 1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p----~---------~d~R---------a-~al----- 52 (392)
T PRK08948 1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHP----G---------FDAR---------A-IAL----- 52 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC----C---------CCCE---------E-EEE-----
T ss_conf 9499999589999999999861679984999827887544578----8---------8843---------4-575-----
Q ss_pred HHHHHHHHHHHHHHHHHCCC---------CCC------CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-----H
Q ss_conf 99999988999999998699---------813------279985510014641145678765640798666542-----6
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGV---------PFS------RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-----H 154 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv---------~f~------r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-----~ 154 (611)
++..++.|+++|+ |+. +...|..... . .. +..+..| .
T Consensus 53 -------~~~s~~~L~~lGvw~~l~~~~~pi~~i~v~d~~~~~~~~~~---~------~~-------~~~~~lg~iv~~~ 109 (392)
T PRK08948 53 -------AAGTCQQLARIGVWSALADCATAITHVHVSDRGHAGFVTLA---A------ED-------YGVAALGYVVELH 109 (392)
T ss_pred -------CHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCEEECC---H------HH-------CCCCCCHHHHHHH
T ss_conf -------69999999987994777850663007898407877625437---6------66-------0885311278799
Q ss_pred HHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 678999999873-1230311315652000134430124689805870899506724741576565
Q gi|254781043|r 155 AILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 155 ~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+...|.+.+.+ .+|+++..+.++++-.+++ .|. + ...+|+ .+.|+-||-|-|.-..
T Consensus 110 ~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~-~v~---v-~l~~g~--~~~a~llVgaDG~~S~ 167 (392)
T PRK08948 110 DVGQRLFALLRKAPGVTLHCPARVANVARTQE-SVT---V-TLDNGE--TLQGKLLVAADGSHSA 167 (392)
T ss_pred HHHHHHHHHHHHCCCCEEECCCEEEEEEECCC-CEE---E-EECCCC--EEEECEEEEECCCCHH
T ss_conf 99999999997589987855876899885588-279---9-978998--9983789991899737
No 183
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.68 E-value=1.2e-07 Score=68.53 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=34.0
Q ss_pred CEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEE--ECCCC
Q ss_conf 13323105889899689999999999889829999--86898
Q gi|254781043|r 12 TYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACI--TKVFP 51 (611)
Q Consensus 12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~li--eK~~~ 51 (611)
.+...||||+|||+|..|..|||+|+|.|+||+|+ +|..+
T Consensus 118 ~~~~~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~l 159 (673)
T PTZ00153 118 NINAEEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCI 159 (673)
T ss_pred CCCHHHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 898435798999987628999999998498699993687874
No 184
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.68 E-value=2.6e-06 Score=59.85 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=44.1
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2342157715853778885332276034021220335664304764322222232156775566542026
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS 437 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~ 437 (611)
-||..+.||. +..+.++++|++||+||+|++. . |...+..++..||.|+.++-.|+.+..
T Consensus 445 ~gl~~~~~G~-i~vd~~t~~Ts~~gVFAgGD~v-~--------Gp~tvV~AIa~Gr~AA~~Id~yL~G~~ 504 (652)
T PRK12814 445 AGIGTSRNGT-VKVDPETLQTSVAGVFAGGDCV-T--------GADIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCCCCCCCCC-EEECCCCCCCCCCCEEECCCCC-C--------CCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5863668998-8858888743999999898887-6--------844999999999999999999858999
No 185
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.64 E-value=3.6e-06 Score=58.94 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 0123421577158537788853322760340212203356643047643222222321567755665420265
Q gi|254781043|r 366 NMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP 438 (611)
Q Consensus 366 ~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~ 438 (611)
+.-|+.++.||-+ ..+.++.+|++||.||+|++.. | +..+..++-.||.|+++++.|++....
T Consensus 695 ~~pgL~~~kwGtI-~vDe~t~~Ts~pgVFAGGDiVt-G--------aaTVI~AmGaGrrAArsId~yLR~~~~ 757 (993)
T PRK12775 695 ATPGLALNKWGNI-AADDDTQSTNMPGVFAGGDIVT-G--------GATVILAMSAGRRAAKSIAAWLRLNKK 757 (993)
T ss_pred CCCCCEECCCCCE-EECCCCCCCCCCCEEECCCCCC-C--------HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6888222587708-9898877668888763656125-5--------769999987089999999999965986
No 186
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.55 E-value=3.6e-06 Score=58.95 Aligned_cols=156 Identities=13% Similarity=0.176 Sum_probs=77.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
.||+|||+|++|+.+|+.++++|.+|.|+|+.+...-... ...-. .++. +-|. +.++. -++ -+
T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~~~~~~~~-~d~R~-~als---~~s~-----~~L~~-lgi-w~----- 64 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFF-KDIRT-TALT---PHSK-----NFLFS-IDI-WE----- 64 (374)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCCE-EEEC---HHHH-----HHHHH-CCC-CH-----
T ss_conf 6299999669999999999857996999978997886657-99634-6746---9899-----99998-698-48-----
Q ss_pred HHHHHHHHHHHHHHCCCCCCC----CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf 999889999999986998132----799855100146411456787656407986665426678999999873-123031
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSR----NEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFF 172 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r----~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~ 172 (611)
.++.+..|+.. +..+.... .+ .. .. ..-.-|.-. -..+...|.+++.+ ..|+++
T Consensus 65 ----------~l~~~~~~~~~i~v~d~~~~~~~-~~----~~--~~--~~~lgyii~--~~~l~~~L~~~~~~~~~i~~~ 123 (374)
T PRK06617 65 ----------ELEKFVAEMQDVYVVDNKASEIL-DL----RN--DA--DAVLGYVVK--NSDFKKILLSKITNNPLITLI 123 (374)
T ss_pred ----------HHHHHHHCCEEEEEECCCCCCEE-EC----CC--CC--CCCCEEEEC--CHHHHHHHHHHHHCCCCCEEE
T ss_conf ----------67886423189999758988536-42----45--67--654346521--389999999999649994897
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 13156520001344301246898058708995067247415765654
Q gi|254781043|r 173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
.+..+.+++.++ +.. .+. .+++ .+.|+-+|.|.|.-..+
T Consensus 124 ~~~~~~~~~~~~-~~~--~~~---~~~~--~i~~~llIgaDG~~S~v 162 (374)
T PRK06617 124 DNNQYQEVISHN-DYS--IIK---FDDK--QIKCNLLIICDGANSKV 162 (374)
T ss_pred CCCCEEEEECCC-CCE--EEE---CCCC--EEEEEEEEEECCCCHHH
T ss_conf 575114665278-826--996---3896--78535899957985166
No 187
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.54 E-value=3.3e-06 Score=59.17 Aligned_cols=317 Identities=21% Similarity=0.263 Sum_probs=154.0
Q ss_pred CCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf 20005344133231058898996899999999998898299998689885210411653425137899999999999899
Q gi|254781043|r 4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTI 83 (611)
Q Consensus 4 ~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~ 83 (611)
.+||+.+.+.-+ =|-|||+|.|||.||=-+.+.|.+|+|.+.-+-.+| + |.-..| |
T Consensus 133 rPD~S~V~~~g~---rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGG--------L---LtFGIP-s--------- 188 (480)
T TIGR01318 133 RPDLSHVKPTGK---RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG--------L---LTFGIP-S--------- 188 (480)
T ss_pred CCCCCCCCCCCC---EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCC--------C---CCCCCC-C---------
T ss_conf 898877300782---789977886025799987517855999747703076--------0---136888-5---------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CC----------EEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 84588779999999999889999999986998132799-85----------51001464114567876564079866654
Q gi|254781043|r 84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEA-GK----------IYQRPFGGHMQNYGEGPPVQRTCAAADRT 152 (611)
Q Consensus 84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~-G~----------~~~~~~gg~~~~~~~g~~~~R~~~~~d~t 152 (611)
|.-|+.++. .+=+-|..||+.|..+-. |+ |.. -|-|.-.+...-...| ..|.
T Consensus 189 ----FKLdK~V~~-------~Rr~if~~MGi~F~Ln~EvGrD~~l~~LLe~YDA-VFlGvGTY~~~~ggLP----~eDa- 251 (480)
T TIGR01318 189 ----FKLDKAVLS-------RRREIFTAMGIEFKLNTEVGRDISLDDLLEDYDA-VFLGVGTYRSMRGGLP----GEDA- 251 (480)
T ss_pred ----HHHHHHHHH-------HHHHHHHHCCCEEECCCEEECCCCHHHHHHHCCE-EEEECCCCCCCCCCCC----CCCC-
T ss_conf ----110278999-------9999997589278658165032555444311484-8961143343128778----8774-
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCH
Q ss_conf 26678999999873123031131565200013443012468980587089950672474157656543342106401444
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGD 232 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGd 232 (611)
..+.++|- -+.+ +|.-+-=+ ++-|+-+ .+++ .+-.+.-+.-|.||+==|| + -+=|
T Consensus 252 -~GV~~ALP-FLia-------nTr~lmGl-~eyGrPi--aGw~-~~~P~~~~~Gk~VVVLGGG-----------D-TaMD 306 (480)
T TIGR01318 252 -PGVLKALP-FLIA-------NTRQLMGL-PEYGRPI--AGWE-PEEPLIDVEGKRVVVLGGG-----------D-TAMD 306 (480)
T ss_pred -CCHHHHHH-HHHH-------CCCEECCC-CCCCCCC--CCCC-CCCCCCCCCCCEEEEECCC-----------C-CHHH
T ss_conf -21666424-7766-------15212378-8877744--6777-6677423477668985888-----------7-5257
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--EEEEEC--CCCCCCCCCCCCCCCCCCCC-EEHH-HHHH
Q ss_conf 8878875136533332223288844220143045665578--089832--68612554076510047520-1115-6889
Q gi|254781043|r 233 GAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEG--GYLVNS--KGERFMERYAPSAKDLASRD-VVSR-CMMM 306 (611)
Q Consensus 233 G~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G--~~l~n~--~Gerf~~~y~~~~~el~~rd-~~s~-ai~~ 306 (611)
=+.=|.|.||.-+ ||+|-..= ....| --..|+ +|=+|..+.-|...+.-.-. +... .+-.
T Consensus 307 CvRTaiR~GA~~V---------TC~YRRDE-----~nMPGSrrEV~NAREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t 372 (480)
T TIGR01318 307 CVRTAIRLGAKKV---------TCAYRRDE-----ANMPGSRREVANAREEGVEFLFNVQPLEIELDEDGKVIGVKLVRT 372 (480)
T ss_pred HHHHHHHHCCCCC---------CEEEECCC-----CCCCCCHHHHCCCHHCCCEEEEEECCEEEEECCCCCEEEEEEECC
T ss_conf 8899998177613---------12665367-----787877555266111171132100315888778885233565235
Q ss_pred HH----HHCCCC---CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 98----817888---88887468861117989999985379999976436786544067520331001234215771585
Q gi|254781043|r 307 EI----REGRGV---GKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVL 379 (611)
Q Consensus 307 ei----~~g~g~---~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~ 379 (611)
++ ..||=- -.|.+.| ||.|. ....+|.+|..-|+ ..--||.+|.|||++
T Consensus 373 ~~GEPDA~GRRrp~pv~GSE~v------l~ADv-----------vI~AFGF~P~~~pW-------L~~~gi~~ds~GrI~ 428 (480)
T TIGR01318 373 KLGEPDAKGRRRPEPVAGSEFV------LPADV-----------VIMAFGFSPHAMPW-------LAEHGITLDSWGRII 428 (480)
T ss_pred CCCCCCCCCCCCCCCCCCCCEE------CCCCE-----------EEEEECCCCCCCCH-------HHHCCEEECCCCCEE
T ss_conf 6678677768777104786515------14655-----------89710678988644-------451775563463277
Q ss_pred CC-----CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 37-----7888533227603402122033566430476432222223215677556654
Q gi|254781043|r 380 DA-----NSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI 433 (611)
Q Consensus 380 ~~-----~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~ 433 (611)
-. +....||+-|=+||.|++ +|||. -.-.++--||.|++.+..|.
T Consensus 429 ~~lsd~~~~~~~QT~~PKiFAGGD~----vRGaD-----LVVTA~aeGR~AA~gi~~wL 478 (480)
T TIGR01318 429 TALSDEGSDLQYQTSNPKIFAGGDA----VRGAD-----LVVTAVAEGRKAAQGILDWL 478 (480)
T ss_pred ECCCCCCCCCCCCCCCCCEECCCCC----EECCC-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 5134556776533568847516770----14672-----20006676689999999985
No 188
>KOG2820 consensus
Probab=98.54 E-value=1.7e-06 Score=60.99 Aligned_cols=185 Identities=19% Similarity=0.197 Sum_probs=92.9
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHH--------
Q ss_conf 323105889899689999999999889829999868988521041165342513789-99999999998998--------
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIK-------- 84 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~-------- 84 (611)
++..+||+|||+|.=||++|.++++.|.+++|+|..++..+.. ++-|++-..-.. .+|-+-.+.-|.+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~G--SShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~ 81 (399)
T KOG2820 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRG--SSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEE 81 (399)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC--CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 2465169998664000088999986577079873367776567--65674402120233689999999999998748464
Q ss_pred HCCC---------CCCHHHHHHH---HH-------HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 4588---------7799999999---99-------889999999986998132799855100146411456787656407
Q gi|254781043|r 85 GSDW---------LGDVDAIQYL---AM-------EAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRT 145 (611)
Q Consensus 85 ~g~~---------l~d~~lv~~~---~~-------~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~ 145 (611)
.|.. +.+.+-.+.. +. +..-.-+++.+ .|.. ++ ++.--+....+
T Consensus 82 ~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk---~fP~--~~-----~l~d~~~G~~n------- 144 (399)
T KOG2820 82 SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRK---RFPS--NI-----PLPDGWQGVVN------- 144 (399)
T ss_pred HCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCC--CC-----CCCCCHHHCCC-------
T ss_conf 3336415620365076787778999998765003555302798997---5877--76-----57864122034-------
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEE--EEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 9866654266789999998731230311315652--00013443012468980587089950672474157656543342
Q gi|254781043|r 146 CAAADRTGHAILHTLYGQALKNNAEFFIEYFALD--LIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSA 223 (611)
Q Consensus 146 ~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~--Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~ 223 (611)
-+.|....-.-+.+|...+++.|+.+..+..++. ++ +++|..++|. ..+|. .|.||.+|+++|-+-.-|-++
T Consensus 145 ~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~-~e~~~~v~V~---Tt~gs--~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820 145 ESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFV-DEEGNHVSVQ---TTDGS--IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred CCCCEEEHHHHHHHHHHHHHHCCEEEECCCCEEEEEEC-CCCCCEEEEE---ECCCC--EEECCEEEEEECHHHHHHCCC
T ss_conf 55657418899999999998708599627504567504-6778525899---66687--433124899830878865574
No 189
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=98.53 E-value=3.5e-07 Score=65.55 Aligned_cols=300 Identities=18% Similarity=0.279 Sum_probs=138.5
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
.+||.||||||.-|+..|-+|++.|++++|||.-.++ +|+ ++=..-|--+-|+
T Consensus 1 ~~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~LG--GTC--------VNVGCVPKKvMW~----------------- 53 (475)
T TIGR01421 1 KEYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKLG--GTC--------VNVGCVPKKVMWY----------------- 53 (475)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCCC--CEE--------EEECEECCHHHCC-----------------
T ss_conf 9754699836861578889888507607876200048--806--------8501137623200-----------------
Q ss_pred HHHHHHHHHHHH-HHHHCCCCCC--CCCCC-CEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCE
Q ss_conf 999998899999-9998699813--27998-551001464114567876564079866654266789999998-731230
Q gi|254781043|r 96 QYLAMEAPQSVY-ELEHYGVPFS--RNEAG-KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAE 170 (611)
Q Consensus 96 ~~~~~~a~~~i~-~Le~~Gv~f~--r~~~G-~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~ 170 (611)
+....+.++ .-+++|++-. .+..+ ++..+.+ ..+|-.|. .-.+..|++- .+.+|+
T Consensus 54 ---aa~~~e~~~~~~~~YGf~~~lPld~~~l~F~f~~l-----------~~~RdaYv------~rl~~~Y~~~L~~~~vd 113 (475)
T TIGR01421 54 ---AASLAETMHRDAADYGFKSELPLDKENLKFNFKEL-----------KEKRDAYV------DRLNGIYQKNLEKNKVD 113 (475)
T ss_pred ---HHHHHHHHHHHHCCCCCCCCCCCCCCCCEECHHHH-----------HHHHHHHH------HHHHHHHHCCCCCCCEE
T ss_conf ---56777887522102785433641003660077999-----------87667899------99888752486505543
Q ss_pred EECCCEEEEEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCC--C
Q ss_conf 3113156520001344-301246898058708995067247415765654334210640144488788751365333--3
Q gi|254781043|r 171 FFIEYFALDLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD--M 247 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~--m 247 (611)
+...+-..- + |+ --+-| +-+.....+|+|+-+++||||-...- .-.|=| |++|.- =
T Consensus 114 ~i~G~A~F~---~-~~kPtveV---~g~~nttevy~A~HIliATGG~p~~p-he~~IP-------------G~elG~~Sd 172 (475)
T TIGR01421 114 VIEGHAEFT---K-DQKPTVEV---NGKENTTEVYTAPHILIATGGKPSIP-HEENIP-------------GAELGLDSD 172 (475)
T ss_pred EEEEEEEEC---C-CCCCCEEE---CCCCCCEEEEECCEEEEECCCCCCCC-CCCCCC-------------CCCCCCCCC
T ss_conf 898678874---8-88963477---36424302576270589448724787-546778-------------401057700
Q ss_pred CCCCC--CCCC--CCCCEEECCCC---CCCCCEEE-EECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH-CCCCCCCC
Q ss_conf 22232--8884--42201430456---65578089-83268612554076510047520111568899881-78888888
Q gi|254781043|r 248 EFVQF--HPTG--IYGAGCLITEG---ARGEGGYL-VNSKGERFMERYAPSAKDLASRDVVSRCMMMEIRE-GRGVGKSK 318 (611)
Q Consensus 248 Ef~qf--hPt~--~~~~~~l~~~~---~rg~G~~l-~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~-g~g~~~~~ 318 (611)
.|+|+ .|.- +.+.|..--|- +-+.|..- +=-.+||-|-..+. .++..+..++.+ |--+....
T Consensus 173 GfF~LEElP~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~vLR~FD~---------~i~~~~~~~~~~~G~~vh~~~ 243 (475)
T TIGR01421 173 GFFALEELPKRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDRVLRSFDS---------MISEKVVEEYEKEGLEVHKLS 243 (475)
T ss_pred CEEHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH---------HHHHHHHHHHHHCCCCCCCCC
T ss_conf 20022017871799907389888888873126402257736736674014---------664266899996796021566
Q ss_pred CEEEEEEC--------CCCHH--H--HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 74688611--------17989--9--999853799999764367865440675203310012342157715853778885
Q gi|254781043|r 319 DHIHLYLN--------HLDPA--V--LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNP 386 (611)
Q Consensus 319 ~~v~ld~~--------~~~~~--~--l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~ 386 (611)
.++-+.-+ |+..- . +-+.-+...+..+. .|--|..+-+.. -.=||..|.+|.+.-..-.|
T Consensus 244 ~~~kveKt~~~d~~~i~~~~~PGrlPvm~~~~~~d~liwa-~GR~Pn~~~L~l------e~~gv~ld~kg~i~vDeyQN- 315 (475)
T TIGR01421 244 KPVKVEKTVEGDKLVIHFEDGPGRLPVMKEIDDVDELIWA-IGRKPNTKGLGL------EKVGVKLDEKGYIIVDEYQN- 315 (475)
T ss_pred EEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCCCCCCC------CCCCEEECCCCCEEEECCCC-
T ss_conf 0479984157864799996688865310234305678740-588567355442------13212566887388744106-
Q ss_pred CCCCCCEEECCCCCCC
Q ss_conf 3322760340212203
Q gi|254781043|r 387 ERFAPGLMAIGEAGCA 402 (611)
Q Consensus 387 ~t~i~GLyAaGe~a~~ 402 (611)
|+++|.||.|++ |+
T Consensus 316 -T~v~gIYAlGDV-~G 329 (475)
T TIGR01421 316 -TNVEGIYALGDV-VG 329 (475)
T ss_pred -CCCCCEEEECCE-EE
T ss_conf -731885872226-81
No 190
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.49 E-value=1.4e-05 Score=54.98 Aligned_cols=68 Identities=28% Similarity=0.431 Sum_probs=49.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|-|||||.|||+||..+++.|.+|.|.||.+..+ |+... ..|+ |.-..+.+.
T Consensus 539 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~G--------GmL~y---GIP~--------------fRLPkevI~-- 591 (1012)
T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG--------GVVKN---IIPE--------------FRISAESIQ-- 591 (1012)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CEEEE---CCCC--------------CCCCHHHHH--
T ss_conf 89998977899999999997799569981589788--------54785---5887--------------778999999--
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 99889999999986998132
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSR 118 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r 118 (611)
..|++++++||.|..
T Consensus 592 -----reI~~i~~~GV~f~t 606 (1012)
T TIGR03315 592 -----KDIELVKFHGVEFKY 606 (1012)
T ss_pred -----HHHHHHHHCCEEEEE
T ss_conf -----999999968969997
No 191
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.48 E-value=1.8e-05 Score=54.32 Aligned_cols=174 Identities=22% Similarity=0.237 Sum_probs=89.6
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCHHCCCC---EEEECCCCCCC-CHHHHHHHHH-------H
Q ss_conf 05889899689999999999889829999868988--5210411653---42513789999-9999999899-------8
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT--RSHTVAAQGG---IAASLANMTPD-SWQWHLYDTI-------K 84 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~--~g~s~~A~GG---i~a~~~~~~~D-s~~~~~~Dt~-------~ 84 (611)
|||||||+|.-|+.||..+|+++.+|+|||...+. ||+| .|- |..+ -.+| -+..++.... +
T Consensus 1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSs---HG~sRiIR~a---Y~Edr~Y~~m~~e~~~lWa~le~ 74 (401)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSS---HGQSRIIRKA---YPEDRFYTSMVSECYQLWAQLEK 74 (401)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CCCCCCEECC---CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 95799817613568999987538617887515677678887---8771000102---67863578899999999999862
Q ss_pred -HCC-----------CCC-C-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEE-EEC
Q ss_conf -458-----------877-9-9999999998899999999869981327998551001464114567876564079-866
Q gi|254781043|r 85 -GSD-----------WLG-D-VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTC-AAA 149 (611)
Q Consensus 85 -~g~-----------~l~-d-~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~-~~~ 149 (611)
.|. |.. + +.+....+. +...++.=..-+.-.+.+ +|.| ...+|+-. ..-
T Consensus 75 E~g~k~h~qT~~l~~G~k~~s~~l~~~~a~--------~~~~~l~H~~~~s~~l~~-rf~G-------~i~~p~n~~g~~ 138 (401)
T TIGR01377 75 EAGTKLHRQTGLLLLGPKENSQSLKTIVAT--------LSRHGLEHELLSSKQLKQ-RFPG-------NIRVPRNEVGLL 138 (401)
T ss_pred CCCCEEECCCCEEEECCCCCCHHHHHHHHH--------HHHCCCCEEEECCHHHHH-CCCC-------CEECCCCEEEEE
T ss_conf 147264313451563157786058999998--------862552303316412320-0476-------234068607887
Q ss_pred CCCC-----HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 6542-----6678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 150 DRTG-----HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 150 d~tG-----~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
+.+| ..-++++.+-+..+|..+++.+.|.++-.+++ .--++|...... ..|.||..|+..|-+.
T Consensus 139 ~~~gGvl~~~ka~~a~q~l~~~~Ga~v~d~~kV~~i~~~Ge-sGe~~vt~kt~~---~sy~a~~lvvtaGaW~ 207 (401)
T TIGR01377 139 DELGGVLYAEKALRALQELAEAHGAIVRDGTKVVEIKPDGE-SGELLVTVKTTK---DSYQAKKLVVTAGAWT 207 (401)
T ss_pred ECCCCEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCC-CCCCEEEEEEEC---CEEECCEEEEECCCCH
T ss_conf 46887462278999999999874968734860366542676-789548999727---7032135789538861
No 192
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.46 E-value=3.4e-06 Score=59.11 Aligned_cols=192 Identities=20% Similarity=0.184 Sum_probs=99.7
Q ss_pred EEECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCC--CC-CH--HH-----
Q ss_conf 31058898996899999999998--89829999868988---52104-116534251--37899--99-99--99-----
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMT--PD-SW--QW----- 77 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~--~D-s~--~~----- 77 (611)
.++||++||+|+.+.+-+..+++ ...+|.|+||..-. .|+.. =|+-|.++. +.+.+ +| ++ +.
T Consensus 5 ~~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~~wNNAGTGHaa~CElNYTp~~~dg~i~i~KA~~In 84 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNERNNAGTGHAALCELNYTVQQADGSIDIKKAKEIN 84 (497)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEHHHHHHHH
T ss_conf 77788998952889999999997699874899981475454407886655221001022048876569824179999999
Q ss_pred --------HHHHHHHHCCCCCCHHH-HH-----------HHHHHHHHHHHHHHH----CCCCCCCCCCCCEEE-EC--CC
Q ss_conf --------99989984588779999-99-----------999988999999998----699813279985510-01--46
Q gi|254781043|r 78 --------HLYDTIKGSDWLGDVDA-IQ-----------YLAMEAPQSVYELEH----YGVPFSRNEAGKIYQ-RP--FG 130 (611)
Q Consensus 78 --------~~~Dt~~~g~~l~d~~l-v~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~-~~--~g 130 (611)
+..-.++.| -+.+++- +. .=|+--.++.+-|.+ -|+.|+.+.+ .+.. .| .-
T Consensus 85 eqFe~S~QfWs~lv~~g-~l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal~~~~lF~~MefseD~~-~i~~w~PLvm~ 162 (497)
T PRK13339 85 EQFEISKQFWGHLVKKG-TIGNPREFINPLPHISFVRGKNNVKFLKKRFEALKQHPMFDNIEYTEDIE-VMAKWMPLMMP 162 (497)
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCHH-HHHHHCCEEEC
T ss_conf 99999999999998657-87985787377982467567588899999999873487877768605989-99753775226
Q ss_pred CCCCCCCCCCCCCEEEEECCCCC-----HHHHHHHHHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEE
Q ss_conf 41145678765640798666542-----66789999998731-2303113156520001344301246898058708995
Q gi|254781043|r 131 GHMQNYGEGPPVQRTCAAADRTG-----HAILHTLYGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRF 204 (611)
Q Consensus 131 g~~~~~~~g~~~~R~~~~~d~tG-----~~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i 204 (611)
|... . ..++...-..| -+|.+.|.+.+.+. |++++.++.|++|-...||.= -+.+.|..+|+...+
T Consensus 163 gR~~------~-e~vAAtr~~~GTDVdFGaLTr~l~~~l~~~~~~~v~~~~eV~~i~r~~dg~w-~v~v~~~~~~~~~~~ 234 (497)
T PRK13339 163 GREA------D-EIMAASKIDEGTDVNFGALTRKMAKSLEAHPNAQVQYNHEVVDLERLSDGGW-EVTVKDRNTGGKREQ 234 (497)
T ss_pred CCCC------C-CCEEEEECCCCEEECHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCE-EEEEEECCCCCEEEE
T ss_conf 9897------8-8555882578534018999999999997489839994788632177899988-999996578975999
Q ss_pred CCCCEEEECCCCC
Q ss_conf 0672474157656
Q gi|254781043|r 205 SAKLVVLATGGYG 217 (611)
Q Consensus 205 ~AkaVILATGG~~ 217 (611)
.|+.|.+..||.+
T Consensus 235 ~A~fVFvGAGG~s 247 (497)
T PRK13339 235 VADYVFIGAGGGA 247 (497)
T ss_pred EECEEEECCCHHH
T ss_conf 9367998887377
No 193
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.46 E-value=2.8e-06 Score=59.67 Aligned_cols=195 Identities=22% Similarity=0.200 Sum_probs=100.5
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCCC--C-CH--HH----
Q ss_conf 2310588989968999999999988--9829999868988---52104-116534251--378999--9-99--99----
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMTP--D-SW--QW---- 77 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~~--D-s~--~~---- 77 (611)
+.++||++||+|+.|.+-+..+++- ..++.|+||.... .|+.. =|+-|.++- +.+.++ | ++ ..
T Consensus 2 ~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~I 81 (489)
T pfam06039 2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKI 81 (489)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 96102999996288999999999759987489998147525550788665521000213414887656884427999999
Q ss_pred ---------HHHHHHHHCCCCCCHHHH-H-----------HHHHHHHHHHHHHHH----CCCCCCCCCCCCEEEECCCCC
Q ss_conf ---------999899845887799999-9-----------999988999999998----699813279985510014641
Q gi|254781043|r 78 ---------HLYDTIKGSDWLGDVDAI-Q-----------YLAMEAPQSVYELEH----YGVPFSRNEAGKIYQRPFGGH 132 (611)
Q Consensus 78 ---------~~~Dt~~~g~~l~d~~lv-~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~~~~gg~ 132 (611)
+....++.| -+.+|+-. . .=|+--.++.+-|.+ -++.|+.+.+ .+..- .+
T Consensus 82 neqFe~Srqfws~lv~~g-~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~-~i~~w-~P-- 156 (489)
T pfam06039 82 NEQFQISRQFWAYLVKEG-VLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPE-KIKEW-VP-- 156 (489)
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHH-HHHHH-CC--
T ss_conf 999999999999998758-98985785056881589877698899999999850587867778447989-99864-48--
Q ss_pred CCCCCCCCCCC-EEEE--ECCCC---CHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEEC
Q ss_conf 14567876564-0798--66654---26678999999873-123031131565200013443012468980587089950
Q gi|254781043|r 133 MQNYGEGPPVQ-RTCA--AADRT---GHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFS 205 (611)
Q Consensus 133 ~~~~~~g~~~~-R~~~--~~d~t---G~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~ 205 (611)
-...|.... .++. ....| =-+|.+.|.+.+.+ .+++++.++.|++|-..+||.=. +.+.|..+|+...+.
T Consensus 157 --Lv~~gR~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~-v~v~~~~~~~~~~~~ 233 (489)
T pfam06039 157 --LMMEGRDPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWT-VTVKDLNTGDKRTIK 233 (489)
T ss_pred --CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEE-EEEEECCCCCEEEEE
T ss_conf --00379797885579944887401189999999999851898289927885345888999879-999865789748998
Q ss_pred CCCEEEECCCCC
Q ss_conf 672474157656
Q gi|254781043|r 206 AKLVVLATGGYG 217 (611)
Q Consensus 206 AkaVILATGG~~ 217 (611)
||.|++..||.+
T Consensus 234 A~fVfvgAGG~s 245 (489)
T pfam06039 234 AKFVFIGAGGGA 245 (489)
T ss_pred ECEEEECCCHHH
T ss_conf 267998887577
No 194
>PRK07236 hypothetical protein; Provisional
Probab=98.45 E-value=8.9e-06 Score=56.38 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=30.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 058898996899999999998898299998689
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
--|+|||+|+|||++|+.++++|.+|.|+||.+
T Consensus 7 ~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~ 39 (386)
T PRK07236 7 PRAVVVGGSLGGLFAANLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 968999936899999999985899989986899
No 195
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.44 E-value=1.3e-05 Score=55.22 Aligned_cols=69 Identities=28% Similarity=0.397 Sum_probs=49.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|-|||||.|||+||..+++.|.+|.|.||.+..+ |+-. ...|+ |.-..+.+.
T Consensus 552 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~G--------GmL~---yGIP~--------------fRLPk~vId-- 604 (1032)
T PRK09853 552 PVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAG--------GVVK---NIIPE--------------FRIPAELIQ-- 604 (1032)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CEEE---ECCCC--------------CCCCHHHHH--
T ss_conf 79998968899999999997799369981589788--------4267---35887--------------678999999--
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 998899999999869981327
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRN 119 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~ 119 (611)
..|++|+++||.|..+
T Consensus 605 -----reI~~l~~~GV~f~tn 620 (1032)
T PRK09853 605 -----HDIDFVAAHGVKFEYG 620 (1032)
T ss_pred -----HHHHHHHHCCCEEEEC
T ss_conf -----9999999779699969
No 196
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.43 E-value=9.3e-06 Score=56.23 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=33.5
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCC
Q ss_conf 310588989968999999999988982-9999868988
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFK-TACITKVFPT 52 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~-V~lieK~~~~ 52 (611)
..+||+|||+|.|||.+|..+++.|.+ ++++||..-.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 75548998987889999999997599867999705766
No 197
>PRK07588 hypothetical protein; Provisional
Probab=98.43 E-value=1.4e-05 Score=55.06 Aligned_cols=153 Identities=17% Similarity=0.173 Sum_probs=78.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|+|||+|+|||++|+.++++|.+|+|+||.+..+... -+|+ +. + .- .+.++. -|+
T Consensus 2 kVlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r~~G----~~i~--l~---~--~~---~~vl~~-lGl--------- 57 (391)
T PRK07588 2 KIAISGAGIAGATLAHWLQRTGHEPTLIERAPKLRTGG----YMVD--FW---G--VG---YEVAKR-MGI--------- 57 (391)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----EEEE--EC---C--HH---HHHHHH-CCC---------
T ss_conf 79999932899999999986899989990389888773----3872--38---3--99---999998-799---------
Q ss_pred HHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9988999999998699813----279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
.+.+.+.|.+.. .+.+|+.... +.-.......+..+ ...+ =..+...|++.+ +.++++...
T Consensus 58 -------~d~l~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~-~~i~-----R~dL~~~L~~~~-~~~v~v~~g 122 (391)
T PRK07588 58 -------TDQLAEAGYQIEHIRSVGPTGRVKAD-LNVDVFRRMVGDDF-TSLP-----RGDLAATIYTTI-EGQVETIFD 122 (391)
T ss_pred -------HHHHHHCCCCCEEEEEECCCCCEEEE-CCCHHHCCCCCCCC-EEEC-----HHHHHHHHHHHC-CCCCEEEEC
T ss_conf -------38998527885069999999988874-37123111347752-1453-----999999999751-448789979
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 1565200013443012468980587089950672474157656
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
..++.+-.++|| |.+ ...+|+.. .++-||=|-|-.+
T Consensus 123 ~~v~~i~~~~dg----V~v-~f~dG~~~--~~DlvVGADGi~S 158 (391)
T PRK07588 123 DSIATIDEHRDG----VRL-TLERGTPR--DFDLVIGADGLHS 158 (391)
T ss_pred CEEEEEEECCCE----EEE-EECCCCEE--EEEEEEECCCCCC
T ss_conf 999999962995----899-98799888--8759995487640
No 198
>KOG2853 consensus
Probab=98.40 E-value=7.1e-06 Score=57.02 Aligned_cols=193 Identities=17% Similarity=0.255 Sum_probs=101.7
Q ss_pred CCEEEEEECEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCCCC-CCCHHCCCCEEEECCCCCCCCHH--HHHHHHH
Q ss_conf 4133231058898996899999999998----898299998689885-21041165342513789999999--9999899
Q gi|254781043|r 11 YTYVDHSYDVVVVGAGGAGLRATLGMAE----KGFKTACITKVFPTR-SHTVAAQGGIAASLANMTPDSWQ--WHLYDTI 83 (611)
Q Consensus 11 ~~~~d~~~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK~~~~~-g~s~~A~GGi~a~~~~~~~Ds~~--~~~~Dt~ 83 (611)
.++....|||||||+|..|.+.|.=++| .|++|+|+|+..... ++|..+-|||.-.+. .++.++ .+..+.+
T Consensus 80 ~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS--lpEnIqmSLF~a~Fl 157 (509)
T KOG2853 80 NEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS--LPENIQMSLFTAEFL 157 (509)
T ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCEEEECC--CCHHHHHHHHHHHHH
T ss_conf 655544367899888865226589998876437943999962675210011455544433214--610011356799999
Q ss_pred HHC-CC--------------------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 845-88--------------------779999999999889999999986998132799855100146411456787656
Q gi|254781043|r 84 KGS-DW--------------------LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV 142 (611)
Q Consensus 84 ~~g-~~--------------------l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~ 142 (611)
+.+ .+ |+-++-++.+..++ +.-.+.|..-..-..-.+.. +|+ +.+-..+
T Consensus 158 r~a~ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~----kvQ~e~GAk~eLls~d~Lt~-rfP-----wlntegV 227 (509)
T KOG2853 158 RNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNS----KVQNELGAKVELLSPDELTK-RFP-----WLNTEGV 227 (509)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHH----HHHHHHCCHHCCCCHHHHHH-HCC-----CCCCCCE
T ss_conf 8777763536677887004777048970502489987757----88776353000348788763-287-----3133562
Q ss_pred CEEEEE----CCCCCHHHHHHHHHHHHHCCCEEECC---------CEEEEEEECCCC-------CCEEEEEEEECCCEEE
Q ss_conf 407986----66542667899999987312303113---------156520001344-------3012468980587089
Q gi|254781043|r 143 QRTCAA----ADRTGHAILHTLYGQALKNNAEFFIE---------YFALDLIINSEG-------CCVGVVAWQLETGEIH 202 (611)
Q Consensus 143 ~R~~~~----~d~tG~~i~~~L~~~~~~~gv~i~~~---------~~~~~Li~d~dG-------~V~Gav~~~~~~G~~~ 202 (611)
.-.++. +.-.-.+++..+.+++...|+.+... ...+.+.+| +| ++.||++. +.++--.
T Consensus 228 aLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tD-d~t~~~~~~~i~~vvV~-m~d~~~r 305 (509)
T KOG2853 228 ALASLGVEKEGWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTD-DGTAKLRAQRISGVVVR-MNDALAR 305 (509)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEEEEECCCCEEEECC-CCHHHHHHCCCCEEEEE-CCCHHCC
T ss_conf 332024453566577999998888765313067423588789703110465325-63244554022203785-6740027
Q ss_pred EECCCCEEEECCCCC
Q ss_conf 950672474157656
Q gi|254781043|r 203 RFSAKLVVLATGGYG 217 (611)
Q Consensus 203 ~i~AkaVILATGG~~ 217 (611)
.+++.-+|+|.|-++
T Consensus 306 ~vk~al~V~aAGa~s 320 (509)
T KOG2853 306 PVKFALCVNAAGAWS 320 (509)
T ss_pred CEEEEEEEECCCCCH
T ss_conf 324788985267317
No 199
>KOG1238 consensus
Probab=98.36 E-value=6.6e-05 Score=50.66 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=38.1
Q ss_pred HCCCEEECCCEEEEEEECCCC-CCEEEEEEEECCCEEEEECCC-CEEEECCCCC
Q ss_conf 312303113156520001344-301246898058708995067-2474157656
Q gi|254781043|r 166 KNNAEFFIEYFALDLIINSEG-CCVGVVAWQLETGEIHRFSAK-LVVLATGGYG 217 (611)
Q Consensus 166 ~~gv~i~~~~~~~~Li~d~dG-~V~Gav~~~~~~G~~~~i~Ak-aVILATGG~~ 217 (611)
+.+..+...+.++.++.|..| +..|++. ..+.|+.+.++|+ -|||+.|-++
T Consensus 266 R~NL~~~~~~~vtrvl~D~~~~~a~gv~~-~~~~~~~~~v~a~kEVILSAGAi~ 318 (623)
T KOG1238 266 RPNLHISRNAAVTRVLIDPAGKRAKGVEF-VRDGGKEHTVKARKEVILSAGAIN 318 (623)
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEE-EECCCEEEEECCCCEEEEECCCCC
T ss_conf 76544234422799998588866899999-823761466302221998356557
No 200
>PRK06753 hypothetical protein; Provisional
Probab=98.35 E-value=4.2e-05 Score=51.97 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=31.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 58898996899999999998898299998689885
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR 53 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~ 53 (611)
-|+|||+|+|||++|+.++++|.+|.|+||.+..+
T Consensus 2 kV~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~ 36 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHTVKVFEKNESVT 36 (373)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 89999945899999999997799999988899988
No 201
>PRK05868 hypothetical protein; Validated
Probab=98.32 E-value=5.1e-05 Score=51.42 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=76.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|||||+|+|||++|+.+++.|.+|.|+||.+..+... .+|.- .+ .-..+-+-| |+-|+ ++
T Consensus 3 kVlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G----~~i~l-----~~--~a~~vL~~m----Gl~d~--~~-- 63 (372)
T PRK05868 3 TVLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGG----QAIDV-----RG--PALDVLERM----GLLAA--AQ-- 63 (372)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CEEEE-----CH--HHHHHHHHC----CCHHH--HH--
T ss_conf 99998988899999999985899889995799988899----66746-----86--999999987----89789--98--
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEE
Q ss_conf 99889999999986998132799855100146411456787656407986665426678999999873123031131565
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFAL 178 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~ 178 (611)
+++.. .-|..| .+.+|+...+..... ..+.+.......-- =..|...|++ +.+.+++++.++.++
T Consensus 64 -~~~~~------~~~~~~-~d~~G~~l~~~~~~~----~~g~~~~~~~~~i~--R~dL~~~L~~-a~~~~v~~~~g~~v~ 128 (372)
T PRK05868 64 -ERKTR------IRGASV-VDRDGNELSRDTEST----PTGGPINSPDIELL--RDDLVELLYG-ATQPTVEYLFDDSIS 128 (372)
T ss_pred -HHCCC------CCCEEE-EECCCCEEEECCCCC----CCCCCCCCCEEEHH--HHHHHHHHHH-HCCCCEEEEECCEEE
T ss_conf -61578------642399-948998987526666----55675688400031--9999999986-345880999578889
Q ss_pred EEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 2000134430124689805870899506724741576565
Q gi|254781043|r 179 DLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 179 ~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+-.+++ .| -| . ..+|... .++-||=|-|=.+.
T Consensus 129 ~i~~~~~-~V-~V-~--f~dg~~~--~~DlVIGADGi~S~ 161 (372)
T PRK05868 129 TLQDDGA-AV-RV-T--FERAAAR--EFDLVIGADGLHSN 161 (372)
T ss_pred EEEECCC-EE-EE-E--EECCCEE--EEEEEEECCCCCHH
T ss_conf 9996499-79-99-9--9079857--86589974787417
No 202
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=98.28 E-value=3.4e-05 Score=52.55 Aligned_cols=52 Identities=10% Similarity=-0.029 Sum_probs=36.6
Q ss_pred HHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 99999987312303113156520001344301246898058708995067247415765
Q gi|254781043|r 158 HTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 158 ~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
..+...+...+.+|+.++.|+++..++ ++|. + ...+|+ .+.|+.||+|+--.
T Consensus 208 ~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~-v---~~~~G~--~~~ad~VI~a~p~~ 259 (444)
T pfam01593 208 QLIAAALGLLGGRVRLNTRVRSITKEG-DGVT-V---TTVDGE--VIEADAVIVTVPLG 259 (444)
T ss_pred HHHHHHHHCCCCEEEECCEEEEEEEEC-CEEE-E---EECCCC--EEECCEEEECCCHH
T ss_conf 999999741598699589778999969-9699-9---988997--66448689857988
No 203
>KOG0405 consensus
Probab=98.27 E-value=6.3e-06 Score=57.36 Aligned_cols=147 Identities=21% Similarity=0.353 Sum_probs=78.2
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 23105889899689999999999889829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
+..||.||||+|..|+.+|-+|++.|++|.|+|-.... |+|+ ++-..-|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l-GGTC--------Vn~GCVPKK-------------------- 68 (478)
T KOG0405 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL-GGTC--------VNVGCVPKK-------------------- 68 (478)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC-CCEE--------EEECCCCCE--------------------
T ss_conf 44236699847861367767787538537998637786-7447--------860456413--------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-HCCCEEEC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987-31230311
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL-KNNAEFFI 173 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gv~i~~ 173 (611)
+..++..-...++.-.++|.+.. +.+++..+.+ ..+|..|. .-+..+|++.+ +.+|+++.
T Consensus 69 vm~~~a~~~~~~~da~~yG~~~~--~~~~fdW~~i-----------k~krdayi------~RLngIY~~~L~k~~V~~i~ 129 (478)
T KOG0405 69 VMWYAADYSEEMEDAKDYGFPIN--EEGSFDWKVI-----------KQKRDAYI------LRLNGIYKRNLAKAAVKLIE 129 (478)
T ss_pred EEEEHHHHHHHHHHHHHCCCCCC--CCCCCCHHHH-----------HHHHHHHH------HHHHHHHHHHCCCCCEEEEE
T ss_conf 67744455677545664298534--4467767998-----------75116899------98878988542315406996
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 31565200013443012468980587089950672474157656
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
..-- + ++ ++.| ..+..+|...+|.||.+.+||||-.
T Consensus 130 G~a~--f-~~-~~~v----~V~~~d~~~~~Ytak~iLIAtGg~p 165 (478)
T KOG0405 130 GRAR--F-VS-PGEV----EVEVNDGTKIVYTAKHILIATGGRP 165 (478)
T ss_pred EEEE--E-CC-CCCE----EEEECCCEEEEEECCEEEEEECCCC
T ss_conf 2678--7-58-9944----7995388157872140899737846
No 204
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.19 E-value=2.2e-06 Score=60.28 Aligned_cols=42 Identities=36% Similarity=0.513 Sum_probs=37.1
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 323105889899689999999999889829999868988521
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH 55 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~ 55 (611)
+|..=++||||||.||+.||+++++.|.+|.||||.+..+|.
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 753053599868489899999999759808999417864504
No 205
>KOG4254 consensus
Probab=98.16 E-value=8.3e-06 Score=56.56 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 67899999987312303113156520001344301246898058708995067247415765
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
++..++.+-+.+.|.+|+++..|..+++|. |+++||.. ++|+ .+.+|.||--++=+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L---~dG~--ev~sk~VvSNAt~~ 320 (561)
T KOG4254 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRL---ADGT--EVRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHHHCCCEEEEHHHHHHEECCC-CEEEEEEE---CCCC--EEEEEEEECCCCHH
T ss_conf 899999999986061421021144603138-82787895---5885--87711565178467
No 206
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=98.14 E-value=0.00043 Score=45.34 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 6789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
.+..-|.+.+.+.||+.... .++++..+++|.|..++ +++|+ .|.|.-.|=|||=
T Consensus 158 k~~~~Lr~~a~~~GV~~i~~-~V~~v~~~~~G~I~sl~---l~~G~--~i~aDlfIDCTGF 212 (457)
T pfam04820 158 LYARFLRRNAEARGVTRVEG-KVVDVQLDADGFVTSLR---LEDGR--EVEADLFIDCSGF 212 (457)
T ss_pred HHHHHHHHHHHHCCCEEEEE-EEEEEEECCCCCEEEEE---ECCCC--EEEEEEEEECCCC
T ss_conf 99999999888579889984-78799988999678999---67898--8876489977874
No 207
>KOG2844 consensus
Probab=98.13 E-value=0.00019 Score=47.61 Aligned_cols=186 Identities=20% Similarity=0.149 Sum_probs=91.4
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCHHCCCCEEEECCCCCCCCH-HHHHHHHH------HHCC
Q ss_conf 3105889899689999999999889829999-86898852104116534251378999999-99999899------8458
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACI-TKVFPTRSHTVAAQGGIAASLANMTPDSW-QWHLYDTI------KGSD 87 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~li-eK~~~~~g~s~~A~GGi~a~~~~~~~Ds~-~~~~~Dt~------~~g~ 87 (611)
...||+|||+|.+|+.+|...++.|.++.++ ++....+|.|..+.| .-..+ -.+|+. +....+.. ..-.
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtag-l~~~l--r~~dv~~qlia~~~~~l~~~leeEt 114 (856)
T KOG2844 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAG-LLWQL--FPSDVELQLIAHTSRVLYRELEEET 114 (856)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC-CEEEC--CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86557998578504789999997146524787641103665633301-03203--6896039998878899999999861
Q ss_pred CCC---CHHHHHHHHHHHHHH---HHHHHHCCCCCCCCCCCCE----EEECCCCCCCCCCCCCCCCEEEEE-CCC--CCH
Q ss_conf 877---999999999988999---9999986998132799855----100146411456787656407986-665--426
Q gi|254781043|r 88 WLG---DVDAIQYLAMEAPQS---VYELEHYGVPFSRNEAGKI----YQRPFGGHMQNYGEGPPVQRTCAA-ADR--TGH 154 (611)
Q Consensus 88 ~l~---d~~lv~~~~~~a~~~---i~~Le~~Gv~f~r~~~G~~----~~~~~gg~~~~~~~g~~~~R~~~~-~d~--tG~ 154 (611)
++- .|. =..+.-.+..+ .+.|...|..+.. +.--+ .+..|+- .+-..+.-..|. +|. .-.
T Consensus 115 gl~tGwiq~-G~~~lAs~~~R~de~kR~~S~g~a~g~-e~~lLsPee~~~~~pL-----Ln~d~v~g~Ly~P~DG~~DP~ 187 (856)
T KOG2844 115 GLHTGWIQN-GGIFLASNRQRLDEYKRLMSRGKAHGV-ESELLSPEETQELFPL-----LNVDDVYGGLYSPGDGVMDPA 187 (856)
T ss_pred CCCCCEECC-CCEEEECCHHHHHHHHHHHHHHHHCCC-EEEECCHHHHHHHCCC-----CCHHHHEEEEECCCCCCCCHH
T ss_conf 997632427-816870477789999999976433153-1055389999886756-----566674012035887644889
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 6789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+..+|...+.+.|+.|++++.+++|-...| ++.||- ..-| .|.+.-||-|||=+++
T Consensus 188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVe---T~~G---~iet~~~VNaaGvWAr 244 (856)
T KOG2844 188 GLCQALARAASALGALVIENCPVTGLHVETD-KFGGVE---TPHG---SIETECVVNAAGVWAR 244 (856)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEECC-CCCCEE---CCCC---CEECCEEEECHHHHHH
T ss_conf 9999999999853847981487425775037-755430---4676---4443527852227798
No 208
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=98.11 E-value=1.8e-05 Score=54.44 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=79.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|.|||+|.+||.||-.+.|+|.+++++||..-.+| .. . ..+..++. ..-+++.+.
T Consensus 3 rVAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG-~W-~-------~~~~~~~~-~~~~y~sl~-------------- 58 (532)
T pfam00743 3 KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGG-LW-R-------FTEHVEEG-RASIYKSVV-------------- 58 (532)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CC-C-------CCCCCCCC-CCCCCCCEE--------------
T ss_conf 799989729999999999877998299977999735-06-6-------88887888-676489706--------------
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC--EEECCC
Q ss_conf 99889999999986-998132799855100146411456787656407986665426678999999873123--031131
Q gi|254781043|r 99 AMEAPQSVYELEHY-GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNA--EFFIEY 175 (611)
Q Consensus 99 ~~~a~~~i~~Le~~-Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv--~i~~~~ 175 (611)
-+++ .++..+ ..||. ..... ++ +..++.+-|..-+...++ .|..+|
T Consensus 59 -~Nts---k~~~~fSDfP~P-------------~~~p~------f~--------~~~~v~~YL~~YA~hF~L~~~Irf~t 107 (532)
T pfam00743 59 -TNSS---KEMSCFSDFPFP-------------EDYPN------FM--------HNSKFLEYLRMFAKHFDLLKYIQFKT 107 (532)
T ss_pred -EECC---CHHHCCCCCCCC-------------CCCCC------CC--------CHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf -8589---005138999899-------------87889------98--------98999999999999809967376577
Q ss_pred EEEEEEECCCCCCEEE--EEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf 5652000134430124--68980587089950672474157656543
Q gi|254781043|r 176 FALDLIINSEGCCVGV--VAWQLETGEIHRFSAKLVVLATGGYGRAY 220 (611)
Q Consensus 176 ~~~~Li~d~dG~V~Ga--v~~~~~~G~~~~i~AkaVILATGG~~~ly 220 (611)
.|+.+-...|....|- +.. ..+|+...-..++||+|||-+..-+
T Consensus 108 ~V~~V~~~~d~~~~g~W~V~~-~~~g~~~~~~fD~ViVctG~~~~P~ 153 (532)
T pfam00743 108 TVCSVTKRPDFSTSGQWEVVT-EHEGKQESAVFDAVMVCTGHHTNPH 153 (532)
T ss_pred EEEEEEECCCCCCCCEEEEEE-EECCEEEEEEEEEEEEECCCCCCCC
T ss_conf 899999766766686189999-8589088999779999466778687
No 209
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.11 E-value=4.4e-06 Score=58.34 Aligned_cols=242 Identities=19% Similarity=0.253 Sum_probs=118.9
Q ss_pred EECEEEECCCHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCH--HCCC-CEEEE--------------------------
Q ss_conf 105889899689999999-99988982999986898852104--1165-34251--------------------------
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATL-GMAEKGFKTACITKVFPTRSHTV--AAQG-GIAAS-------------------------- 66 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi-~A~e~G~~V~lieK~~~~~g~s~--~A~G-Gi~a~-------------------------- 66 (611)
.||.||||||+||..+|- .+++.|.+|+||||-.-.+|+|. ...+ ||..-
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~Tgil~H~YGpHIfHTd~~~v~~y~~~f~E~n~ 80 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDENTGILFHQYGPHIFHTDNQEVFDYISPFFELNN 80 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHCCCHHHHC
T ss_conf 95179986636779999999997099889997306658734442248874367741880354385314322322024322
Q ss_pred ------CC--C-----CCCC----------CHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHH------------
Q ss_conf ------37--8-----9999----------999999989984588-7799999999998899999999------------
Q gi|254781043|r 67 ------LA--N-----MTPD----------SWQWHLYDTIKGSDW-LGDVDAIQYLAMEAPQSVYELE------------ 110 (611)
Q Consensus 67 ------~~--~-----~~~D----------s~~~~~~Dt~~~g~~-l~d~~lv~~~~~~a~~~i~~Le------------ 110 (611)
|. + .+-| +-..-+...+++-.. ..+.=.+..|-+.+...|+.|-
T Consensus 81 Y~hrvGL~l~~~~~~~LPFn~~~~~~Ll~~k~a~~l~~~~~~~~~k~~~~vpl~~L~~~~~p~i~~l~~~l~~~v~~~Yt 160 (390)
T TIGR00031 81 YQHRVGLALKNNLDLTLPFNLNQLRKLLGVKDAEELENFLKARFKKFGAHVPLLELQEIADPDIQLLYQFLYRKVYKPYT 160 (390)
T ss_pred CCCCCCCCEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 45775751106775679847799998628887689999998632320461556888411685378899999998624777
Q ss_pred --HCCCCCCCCCC---CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEECCCEEEEEEECC
Q ss_conf --86998132799---8551001464114567876564079866654266789999998731-23031131565200013
Q gi|254781043|r 111 --HYGVPFSRNEA---GKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIEYFALDLIINS 184 (611)
Q Consensus 111 --~~Gv~f~r~~~---G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~ 184 (611)
.||.++..-+. |.+-.+ +--...++. .|+.-+-++.|- ..+.+++.+. =|++..+|--.+||...
T Consensus 161 ~K~WGl~~~~~~~~v~~Rvpv~-Ls~d~~YF~-----dr~yQg~P~~GY---T~~~~kML~~Plidl~Lntc~~~~L~~~ 231 (390)
T TIGR00031 161 VKQWGLPLEEIDPEVIGRVPVV-LSEDSSYFP-----DRIYQGLPKGGY---TKLFEKMLDHPLIDLKLNTCKINLLKLK 231 (390)
T ss_pred CCCCCCCHHHCCHHHHCCEEEE-EECCCCCCC-----CCEEECCCCCCH---HHHHHHHHCCCEEEEECCCCHHHHHHHC
T ss_conf 3336788577680161635389-503688666-----524622367535---7998997409846763088745664205
Q ss_pred CCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCC----------------------CCCEECCHHHHHHHHHCC
Q ss_conf 4430124689805870899506724741576565433421----------------------064014448878875136
Q gi|254781043|r 185 EGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSAT----------------------SAHTCTGDGAGMVARAGL 242 (611)
Q Consensus 185 dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t----------------------~~~~~tGdG~~mA~~aGa 242 (611)
|++.. + .+.. |+ .=|+=||=.=.+|-++- +|..|--| +-.
T Consensus 232 D~ql~----f--~~~~---~~--k~viYtG~ID~lF~YrFG~L~YRSL~f~~~r~~~~~fQ~~avvN~pD-------~~~ 293 (390)
T TIGR00031 232 DSQLF----F--ANKE---IR--KPVIYTGLIDQLFGYRFGELQYRSLKFEWERYETKKFQEYAVVNYPD-------LDV 293 (390)
T ss_pred CCEEE----E--CCCC---CC--CCEEEECCCHHHCCCEECCCCCCCCCCCHHCCCCCCCCCCCEECCCC-------CCC
T ss_conf 76255----4--3776---65--77677437320127201577652210000000340116766340567-------769
Q ss_pred C-CCCCCCCCCCCCCCCCCEEECC-CCCCCCCEEEEECCCC-CCCCCCCCCC
Q ss_conf 5-3333222328884422014304-5665578089832686-1255407651
Q gi|254781043|r 243 P-LQDMEFVQFHPTGIYGAGCLIT-EGARGEGGYLVNSKGE-RFMERYAPSA 291 (611)
Q Consensus 243 ~-l~~mEf~qfhPt~~~~~~~l~~-~~~rg~G~~l~n~~Ge-rf~~~y~~~~ 291 (611)
. .+-.||=|||+++...+.+.++ |-+ |. =..|+ ||+|-|+|-.
T Consensus 294 ~~TR~~EyK~L~~~~~~~~~T~v~~EyP---~~---~~~GdPRFnEpyYPvn 339 (390)
T TIGR00031 294 DITRIVEYKHLTPTGLESKQTIVSKEYP---GE---YKVGDPRFNEPYYPVN 339 (390)
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECC---CC---CCCCCCCCCCCCCCCC
T ss_conf 7432565443266777446747874067---56---5448885457878767
No 210
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.02 E-value=0.00035 Score=45.93 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 266789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
...++.+|.+.+. .+++++.++.+++|..++ +++..+ ..+|. .|.|+.||+|+|-...
T Consensus 134 p~~~~~al~~~a~-~g~~~~~~~~V~~i~~~g-~~~~v~----~~~g~--~~~ad~vV~AaG~~s~ 191 (381)
T TIGR03197 134 PPQLCRALLAHAG-IRLTLHFNTEITSLERDG-EGWQLL----DANGE--VIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHHHHHH-HCCEEEECCEEEEEEEEC-CEEEEE----ECCCC--EEECCEEEECCCCCHH
T ss_conf 8999999999997-297899362589999959-989999----89998--8973558985542035
No 211
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=98.02 E-value=5e-06 Score=58.02 Aligned_cols=348 Identities=18% Similarity=0.241 Sum_probs=150.2
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY 97 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 97 (611)
|||+|||||.+|-+||..+++.|.+|+||||... +.-=.+|.|.-.+- .+-|=|+..+.-=++ .
T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~---~~KPCGGAIPp~li-~EFdiP~~li~~r~~------------~ 64 (408)
T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAGIETILLERALS---RIKPCGGAIPPCLI-EEFDIPDDLIDRRVR------------K 64 (408)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHC---CCCCCCCCCCHHHC-CCCCCCHHHHHHHHC------------E
T ss_conf 9678981685068999999864974886302432---65888886651101-235788889973200------------6
Q ss_pred HHHHHHH--HHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9998899--99999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r 98 LAMEAPQ--SVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 98 ~~~~a~~--~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
+---||. .+..=...-+|. +++.+ |+ +.|-+ +=.-|.+++.+.|.+++.-.
T Consensus 65 ~~miSP~Gq~~~v~~~~~~P~---~~~yV------GM---------VrREv---------FD~~LReRA~kaGAe~~~g~ 117 (408)
T TIGR02023 65 ARMISPSGQEIAVEIKVDIPV---EDGYV------GM---------VRREV---------FDEYLRERAQKAGAELIEGL 117 (408)
T ss_pred EEEECCCCCCEECCCEEECCC---CCCEE------EE---------EEHHH---------CCHHHHHHHHHHHHHHHHHH
T ss_conf 467777886100242024365---88667------77---------55144---------15789999876214766567
Q ss_pred EEEEEEECCCC---CCEEEEEEEE-----CCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCC
Q ss_conf 56520001344---3012468980-----587089950672474157656543342106401444887887513653333
Q gi|254781043|r 176 FALDLIINSEG---CCVGVVAWQL-----ETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDM 247 (611)
Q Consensus 176 ~~~~Li~d~dG---~V~Gav~~~~-----~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~m 247 (611)
+ +.|-.|.+| .++ +.-.+. .+++...+.++.||=|-|-.++.=...-.-+.+ .-.++|++-=.++-+-
T Consensus 118 f-~~~~~d~~GWds~~~-~~~~~~~G~k~ag~~~~~v~~~~VIGADGA~S~vAR~~~~~~~~--~~~viA~qEri~~p~~ 193 (408)
T TIGR02023 118 F-KKLERDEDGWDSRVT-LQYREKDGKKEAGEEKKSVEADVVIGADGANSKVARKELGLPDN--LPKVIAYQERIKLPDE 193 (408)
T ss_pred H-HHHCCCCCCCCCCEE-EEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC--HHHEEEHHHEECCCCC
T ss_conf 5-520156777755258-99876777512567777378988760447886588971875886--0230201120048886
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHH--HHHHHHCCCCCCCCCEEEEEE
Q ss_conf 222328884422014304566557808983268612554076510047520111568--899881788888887468861
Q gi|254781043|r 248 EFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM--MMEIREGRGVGKSKDHIHLYL 325 (611)
Q Consensus 248 Ef~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai--~~ei~~g~g~~~~~~~v~ld~ 325 (611)
.-+.+.++ +++ =|+ ..|++| |.=++.. -..+.=|-|+.+
T Consensus 194 ~~~~y~e~-------------------~~d--------~~~--~g~VSP-DFYgW~FPk~dH~avG~Gt~P--------- 234 (408)
T TIGR02023 194 SKMKYYEE-------------------LAD--------VYY--DGEVSP-DFYGWVFPKGDHIAVGTGTEP--------- 234 (408)
T ss_pred CCCCCCCC-------------------EEE--------EEE--CCEECC-CCCCCCCCCCCEEEEECCCCC---------
T ss_conf 56577887-------------------799--------998--880486-423020688777888327885---------
Q ss_pred CCCCHHHHHHHHHHHHHHHH--HHCCCCCCCC--EEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 11798999998537999997--6436786544--0675203310012342157715853778885332276034021220
Q gi|254781043|r 326 NHLDPAVLQERLPGISESAR--IFAGVDVTRD--PIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC 401 (611)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~--~~~g~D~~~~--~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~ 401 (611)
...--+++....+.++.. ...+.-+.+| |||..|--|+..+= |.-=+|++|.
T Consensus 235 --~h~~d~K~~~~~lr~~~GD~L~~~~tir~EaapIPm~Pr~~~~~~r----------------------~~~L~GDAAG 290 (408)
T TIGR02023 235 --THGFDIKQLQAALRRRAGDKLDGGKTIRREAAPIPMKPRPRWDSGR----------------------DVVLVGDAAG 290 (408)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCC----------------------CEEEECCCCC
T ss_conf --6427899999999987302656183010026767755441000588----------------------6699813466
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 33566430476432222223215677556654202656676400235788863101037887136899987887665097
Q gi|254781043|r 402 ASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA 481 (611)
Q Consensus 402 ~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~ 481 (611)
.=.| -+|=+.-=++..|++|++...++++.....+ +...+.....++.+.. .+++.+.+-||++
T Consensus 291 ~V~~----~SGEGIY~Am~sG~~aA~a~~E~l~~Gkk~~--~a~~L~~y~~~f~K~y-----~~~f~~L~~LQ~~----- 354 (408)
T TIGR02023 291 LVTP----ASGEGIYFAMKSGKMAAEAIVEALQSGKKAI--DATDLRKYEKKFMKLY-----GTTFRVLRVLQKV----- 354 (408)
T ss_pred CEEC----CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHC-----CHHHHHHHHHHHH-----
T ss_conf 3344----3761688876310789999999984453252--4464478999987631-----5043466777432-----
Q ss_pred EEEECHHHHHH
Q ss_conf 26875899999
Q gi|254781043|r 482 GVFRTQDSLSD 492 (611)
Q Consensus 482 gi~R~~~~L~~ 492 (611)
.+||+...+.
T Consensus 355 -~Yrsd~~RE~ 364 (408)
T TIGR02023 355 -YYRSDRRREK 364 (408)
T ss_pred -HCCCCCCHHH
T ss_conf -1388720247
No 212
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.01 E-value=0.0001 Score=49.44 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=76.3
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 588989968999999999988--982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
-|+|||+|.|||..||-.+.+ +.+|.|+|+.+... | -|+-.++....- |-++ -+|++..+
T Consensus 2 kI~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~d--T----fGwGVVfsD~tL--------~~l~----~~Dp~s~~ 63 (770)
T PRK08255 2 RIVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYD--T----FGWGVVFSDATL--------GNLR----AADPVSAA 63 (770)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC--C----EEEEEECCHHHH--------HHHH----HCCHHHHH
T ss_conf 4999778758999999998658999747984279999--5----244687472666--------4555----43999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHHHHHCCCEEECCC
Q ss_conf 999988999999998699813279985510014641145678765640798666542-6678999999873123031131
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAILHTLYGQALKNNAEFFIEY 175 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i~~~L~~~~~~~gv~i~~~~ 175 (611)
.+.++ |.+-++..+..+ |... ...|+. ++ ..| +.|+..|.++|++.||++..++
T Consensus 64 ~i~~~--------------f~~Wddi~v~~~---g~~~-~~~Ghg-----F~--gi~R~~LL~iLq~Ra~~lGV~l~fe~ 118 (770)
T PRK08255 64 AIGDA--------------FNHWDDIEVHFK---GRRI-RSGGHG-----FA--GIGRKRLLNILQARCEELGVKLVFET 118 (770)
T ss_pred HHHHH--------------HCCCCCEEEEEC---CEEE-EECCCE-----EE--HHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99997--------------478636699968---9079-966960-----66--47499999999999998398489326
Q ss_pred EEEEEE-----ECCCCCCEEEEEEE
Q ss_conf 565200-----01344301246898
Q gi|254781043|r 176 FALDLI-----INSEGCCVGVVAWQ 195 (611)
Q Consensus 176 ~~~~Li-----~d~dG~V~Gav~~~ 195 (611)
.+.++- .|.| -|+++-++|
T Consensus 119 ~i~~~~~~~~~~daD-LVVaaDG~N 142 (770)
T PRK08255 119 EVPDDQAFALQYDAD-LVIASDGLN 142 (770)
T ss_pred CCCCCCHHHHCCCCC-EEEECCCCC
T ss_conf 379721011104789-899878716
No 213
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.00 E-value=1.1e-05 Score=55.65 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=32.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC
Q ss_conf 5889899689999999999889--829999868988521
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSH 55 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~ 55 (611)
.|+|||+|+|||+||..++++| .+|+|+||....+|.
T Consensus 2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~ 40 (452)
T PRK11883 2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGK 40 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEE
T ss_conf 599999878999999999964979978999889988103
No 214
>KOG0029 consensus
Probab=97.99 E-value=1.1e-05 Score=55.66 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=35.0
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 332310588989968999999999988982999986898852
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
..-++.+|+|||+|+|||.||-.+.+.|.+|+|+|--...+|
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 467888389989857899999999975982599971477676
No 215
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.97 E-value=0.00051 Score=44.85 Aligned_cols=198 Identities=22% Similarity=0.181 Sum_probs=100.8
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCC--CC-C--HHH---
Q ss_conf 3231058898996899999999998--89829999868988---52104-116534251--37899--99-9--999---
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMT--PD-S--WQW--- 77 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~--~D-s--~~~--- 77 (611)
.+.++||++||+|+-+.+-+.-++| ...++.|+||..-. .|+.. =|+-|.++. +.+.+ +| + +..
T Consensus 6 ~~~~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~CELNYTp~~~dG~i~i~KA~~ 85 (499)
T PRK05257 6 EESKTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEQADGSIDISKAVK 85 (499)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 88866689999528899999999970998748999924600545076655454402130221488776798370899999
Q ss_pred ----------HHHHHHHHCCCCCCHHHH-H-----------HHHHHHHHHHHHHHH----CCCCCCCCCCC--CEEEECC
Q ss_conf ----------999899845887799999-9-----------999988999999998----69981327998--5510014
Q gi|254781043|r 78 ----------HLYDTIKGSDWLGDVDAI-Q-----------YLAMEAPQSVYELEH----YGVPFSRNEAG--KIYQRPF 129 (611)
Q Consensus 78 ----------~~~Dt~~~g~~l~d~~lv-~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G--~~~~~~~ 129 (611)
+..-.++. .-+.+|+-. . .=++--..+.+.|.. -|+.|+.+.+- ++..--.
T Consensus 86 Ine~Fe~SrQfWs~lv~~-g~l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al~~~~lF~~Mefsed~~~i~~W~PLvm 164 (499)
T PRK05257 86 INEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKASPLFAGMEFSEDPAQIKEWAPLMM 164 (499)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCHHC
T ss_conf 999999999999999975-8878968853568834788885878999999998743868788575479999986354300
Q ss_pred CCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC
Q ss_conf 6411456787656--407986665426678999999873-1230311315652000134430124689805870899506
Q gi|254781043|r 130 GGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA 206 (611)
Q Consensus 130 gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A 206 (611)
-|.. ...++ -|+-+..|-.=-+|.+.|.+.+.+ .+++++.++.|++|-...||.= -+.+.|..+|+...++|
T Consensus 165 ~gR~----~~e~vAaTr~~~GTDVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a 239 (499)
T PRK05257 165 EGRD----PSEKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGTW-TVTVKDLKTGEKRTVRA 239 (499)
T ss_pred CCCC----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCE-EEEEEECCCCCEEEEEE
T ss_conf 6999----898500583478754568999999999997589838993688756088899987-99999878897279982
Q ss_pred CCEEEECCCCC
Q ss_conf 72474157656
Q gi|254781043|r 207 KLVVLATGGYG 217 (611)
Q Consensus 207 kaVILATGG~~ 217 (611)
|-|-+..||.+
T Consensus 240 ~fVFiGAGG~a 250 (499)
T PRK05257 240 KFVFIGAGGGA 250 (499)
T ss_pred CEEEECCCCHH
T ss_conf 56998888145
No 216
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=97.96 E-value=3.5e-05 Score=52.49 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHH--HCCCEEECCCEEEEEEECC------CCCCEEEEEEEECCCEEEEECCCCEEEECC
Q ss_conf 667899999987--3123031131565200013------443012468980587089950672474157
Q gi|254781043|r 154 HAILHTLYGQAL--KNNAEFFIEYFALDLIINS------EGCCVGVVAWQLETGEIHRFSAKLVVLATG 214 (611)
Q Consensus 154 ~~i~~~L~~~~~--~~gv~i~~~~~~~~Li~d~------dG~V~Gav~~~~~~G~~~~i~AkaVILATG 214 (611)
.+|+.+|.+-+. ..|+++..+..+.++.+++ ++++.++. ..+| ..+.|.+||.+.=
T Consensus 227 ~al~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~---~~~~--~~~~ad~VvSnAD 290 (526)
T TIGR02734 227 GALVAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVATGGRATAVH---LADG--ERLDADAVVSNAD 290 (526)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEECCEEEEEE---CCCC--EEEEEEEEEECCC
T ss_conf 89999999999746874699745531144621674233165243455---0654--0331127887487
No 217
>KOG2960 consensus
Probab=97.94 E-value=1.1e-05 Score=55.89 Aligned_cols=118 Identities=27% Similarity=0.368 Sum_probs=71.8
Q ss_pred EECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 1058898996899999999998--89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
+.||+|||+|.|||+||...+. ..++|.+||..-..+|+++. +.+ .|.-++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL---------GGQ-------LFSAMv----------- 128 (328)
T KOG2960 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL---------GGQ-------LFSAMV----------- 128 (328)
T ss_pred CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC---------CCH-------HHHHHH-----------
T ss_conf 04569987786654146663036998469999700369974340---------101-------545654-----------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCEEEC
Q ss_conf 9999998899999999869981327998551001464114567876564079866654266789999998-731230311
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAEFFI 173 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~i~~ 173 (611)
+|. .+--+|.++|+|++ +.|.|...+ |++ -...+...++ ...+|++++
T Consensus 129 vRK------PAhLFL~EigvpYe--degdYVVVK------------------HAA-----LFtSTvmsk~LalPNVKLFN 177 (328)
T KOG2960 129 VRK------PAHLFLQEIGVPYE--DEGDYVVVK------------------HAA-----LFTSTVMSKVLALPNVKLFN 177 (328)
T ss_pred HCC------HHHHHHHHHCCCCC--CCCCEEEEE------------------EHH-----HHHHHHHHHHHCCCCCEEEC
T ss_conf 247------28888887389734--678779995------------------078-----89999999986278600001
Q ss_pred CCEEEEEEECC--CC--CCEEEE
Q ss_conf 31565200013--44--301246
Q gi|254781043|r 174 EYFALDLIINS--EG--CCVGVV 192 (611)
Q Consensus 174 ~~~~~~Li~d~--dG--~V~Gav 192 (611)
-+.+.|||+.. +| ||.|++
T Consensus 178 AtavEDLivk~g~~g~~rvaGVV 200 (328)
T KOG2960 178 ATAVEDLIVKPGEKGEVRVAGVV 200 (328)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 01135550036867736887897
No 218
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.94 E-value=0.00061 Score=44.36 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=87.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCC-CCHHCCCCEEEECCCCCCCCHH--HHHHHHHHHCCCCC
Q ss_conf 5889899689999999999889-----82999986898852-1041165342513789999999--99998998458877
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRS-HTVAAQGGIAASLANMTPDSWQ--WHLYDTIKGSDWLG 90 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g-~s~~A~GGi~a~~~~~~~Ds~~--~~~~Dt~~~g~~l~ 90 (611)
||+|||||+.|++-|+++...+ .+|.|||+..+... ++. + + .+.-+.. .+-..+++.= |+-
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~-----~---f--kD~R~~AlS~GS~~~L~~l-Gll 69 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPG-----F---F--KDARSLALSYGSKQILEKL-GLL 69 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-----C---C--CCCHHHHHHHHHHHHHHHC-CCC
T ss_conf 978885658999999998506775576158986565744246864-----2---3--5650468768999999853-863
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf 9999999999889999999986-998132799855100146411456787656407986665426-----6789999998
Q gi|254781043|r 91 DVDAIQYLAMEAPQSVYELEHY-GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGH-----AILHTLYGQA 164 (611)
Q Consensus 91 d~~lv~~~~~~a~~~i~~Le~~-Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~-----~i~~~L~~~~ 164 (611)
+ |.....|+.. ..|..+ -.+..+...|.+.....- +.-+.-|. .+..+|.+++
T Consensus 70 ----------q-Ph~W~~l~~~ratpI~~---IhVSD~g~fG~~~~~~~~-------~~~~aLGyVV~~~~~~~~L~~~l 128 (425)
T TIGR01984 70 ----------Q-PHLWPKLAPFRATPIKD---IHVSDQGHFGATELRASE-------FGLPALGYVVELADLGQALLKRL 128 (425)
T ss_pred ----------C-HHHHHHHHCCCCCCCCE---EEEEECCCEEEEEECHHH-------CCCCCCCEEEEHHHHHHHHHHHH
T ss_conf ----------3-12578860136787751---688645830013412536-------28764531421789999999998
Q ss_pred HHC-CCEEECCCEEEEEEECCCC----------CCEEEEEEEE-CCCE--EEEECCCCEEEECCCC
Q ss_conf 731-2303113156520001344----------3012468980-5870--8995067247415765
Q gi|254781043|r 165 LKN-NAEFFIEYFALDLIINSEG----------CCVGVVAWQL-ETGE--IHRFSAKLVVLATGGY 216 (611)
Q Consensus 165 ~~~-gv~i~~~~~~~~Li~d~dG----------~V~Gav~~~~-~~G~--~~~i~AkaVILATGG~ 216 (611)
.+. .|+++.-..+.++..+.++ .+.-+.+ -. .+++ +..+.|+=||.|-||.
T Consensus 129 ~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~-~lt~~~~rhP~~l~~~Lli~ADGGl 193 (425)
T TIGR01984 129 AKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEV-TLTDNEQRHPLQLQAKLLIAADGGL 193 (425)
T ss_pred HHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEE-EEECCCCCCCEEEEEEEEEEECCCC
T ss_conf 6256651125753211210578630005666655103578-8830887564055530889855863
No 219
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.86 E-value=2.2e-05 Score=53.82 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2276034021220335664304764322222232156775566542026566764002357888631
Q gi|254781043|r 389 FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFD 455 (611)
Q Consensus 389 ~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (611)
.|||||-||-.. |.-| -.|+...|-+||.+||..+++..+.........-.....+.
T Consensus 331 ~~~~Lf~AGQIn--Gt~G--------YeEAAAqGliAGiNAa~~~~Gk~p~~~p~~t~~GaL~~~i~ 387 (434)
T PRK05335 331 SRPNLFFAGQIT--GVEG--------YVESAASGLLAGINAARLALGKEPVVPPPTTALGALLNYIT 387 (434)
T ss_pred CCCCCEECCCCC--CCHH--------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 879827711336--7418--------89999988999999999966999989880318999999844
No 220
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=3e-05 Score=52.91 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=40.6
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC---CCCEEE
Q ss_conf 1058898996899999999998898299998689885210411---653425
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA---QGGIAA 65 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A---~GGi~a 65 (611)
.||.||||+|++|+..|-.|++.|.+|++|||-+-.+|++.-. +-||..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlv 52 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILV 52 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf 9758998776268899999997598799996256678754343477777588
No 221
>TIGR00275 TIGR00275 conserved hypothetical protein TIGR00275; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases..
Probab=97.84 E-value=0.00015 Score=48.38 Aligned_cols=187 Identities=17% Similarity=0.162 Sum_probs=119.1
Q ss_pred EEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 89899689999999999889--8299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 21 VVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 21 lVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
+|||+|.+|+.+++.+++.+ .+|++++.+........+..||...... .. -++..++...-++|.+ +...+.+ +
T Consensus 1 ~~~g~g~~g~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~ggg~c~~~~-~~-~~p~~~~~~~p~gg~~-~~~~~~~-~ 76 (411)
T TIGR00275 1 IVVGGGAAGLFCAANCARLGPEGRVLLLDNGKKPGRKVLLSGGGRCNFTN-LC-VDPGAYLSQNPRGGHF-LKGALAR-F 76 (411)
T ss_pred CEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHEEECCCCCEEEEE-EE-CCCHHHHHCCCCCCHH-HHHHHHH-C
T ss_conf 91236301356666654226554068862574100000112785100000-10-0504665237765225-6656653-1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEE
Q ss_conf 99889999999986998132799855100146411456787656407986665426678999999873123031131565
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFAL 178 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~ 178 (611)
...+.+.|....|+.+.....|.+.. +.+ ....++..|...+.+.++++..+..+.
T Consensus 77 --~~~~~~~~~~~~g~~~~~~~~g~~~p---------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (411)
T TIGR00275 77 --TPWDFIALVGAEGVALHEKALGQLFP---------------------CDD-GAGQIVDCLLSECDKGGVELRLRSEVL 132 (411)
T ss_pred --CCHHHHHHHHHCCCEEHHHHCCCEEC---------------------CCC-CHHHHHHHHHHHHHHCCCEEEECCHHH
T ss_conf --32135555531142000110253103---------------------566-446899998875532262132100233
Q ss_pred EEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCC
Q ss_conf 20001344-301246898058708995067247415765654334210640144488788751365333
Q gi|254781043|r 179 DLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD 246 (611)
Q Consensus 179 ~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~ 246 (611)
.+-..+.| ++.=+. +-......++..|++|||..-.- .+.+--|+.++.+.|..+.-
T Consensus 133 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~------~g~~p~g~~~~~~~g~~~~~ 190 (411)
T TIGR00275 133 GLEKLENGEKVRFTL-----QLNGTVWGCEGLIIATGGLSLPG------LGANPFGYRWAEQFGLPVLP 190 (411)
T ss_pred HHHHHCCCCEEEEEE-----ECCCCEEECCCCEEECCCCCCCC------CCCCCCCHHHHHHCCCCCCC
T ss_conf 444302564044433-----00310000023123136520012------57763211446560861225
No 222
>KOG2614 consensus
Probab=97.81 E-value=4.1e-05 Score=52.05 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=35.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 105889899689999999999889829999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~ 55 (611)
+=+|+|||+|++||.+|+.++++|.+|+|+|+....|+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 974899888389899999998758748998621465558
No 223
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.81 E-value=0.00015 Score=48.29 Aligned_cols=176 Identities=22% Similarity=0.242 Sum_probs=89.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH-HHHH
Q ss_conf 588989968999999999988982999986898852104116534251378999999999998998458877999-9999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD-AIQY 97 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~-lv~~ 97 (611)
-|-|||||.|||.||-.+.++|-.|+|.||....+| . +-+..|+ +.-|.. .|.
T Consensus 153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GG--------L---L~YGIPn--------------mKLdK~e~v~- 206 (517)
T TIGR01317 153 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGG--------L---LRYGIPN--------------MKLDKEEIVD- 206 (517)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC--------C---CCCCCCC--------------CCCCHHHHHH-
T ss_conf 689975675799999998535883899743678886--------3---0248887--------------4337388999-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCC-C------CEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCC
Q ss_conf 999889999999986998132799-8------55100146411456787656407986665426678999999873-123
Q gi|254781043|r 98 LAMEAPQSVYELEHYGVPFSRNEA-G------KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNA 169 (611)
Q Consensus 98 ~~~~a~~~i~~Le~~Gv~f~r~~~-G------~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv 169 (611)
.+|+.|.+=|+.|..+-. | ++..-..---+. ...-..+.=.++|.+.| .-+=|-=.=++ .||
T Consensus 207 ------RRi~~l~aEG~~FvtnteiGdWdenskitnlsk~di~~-~~L~~~fDAVVLa~Ga~---~pRDLpI~GREL~Gi 276 (517)
T TIGR01317 207 ------RRIDLLEAEGVDFVTNTEIGDWDENSKITNLSKKDISA-DELKEDFDAVVLATGAT---KPRDLPIPGRELKGI 276 (517)
T ss_pred ------HHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCH-HHHHHHCCEEEEECCCC---CCCCCCCCCCCCCCC
T ss_conf ------99999874784201783004653444200022342687-99871469389833788---601035577664660
Q ss_pred EEECCCEEEEEEECCCCCCE-EEEEEEECCCE-EEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCC-CCC
Q ss_conf 03113156520001344301-24689805870-8995067247415765654334210640144488788751365-333
Q gi|254781043|r 170 EFFIEYFALDLIINSEGCCV-GVVAWQLETGE-IHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLP-LQD 246 (611)
Q Consensus 170 ~i~~~~~~~~Li~d~dG~V~-Gav~~~~~~G~-~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~-l~~ 246 (611)
+++-++|..+ .||. +=-..+ .+|+ ++.++-|-||+==||=+ ..+|-| =++|.||. +.+
T Consensus 277 -----H~AMefL~~~-tk~~l~~~~k~-~~GqP~I~akGK~VvvIGGGDT--------G~DCvG----Ts~RhGA~sV~q 337 (517)
T TIGR01317 277 -----HFAMEFLTLN-TKALLDDDFKD-KDGQPFIKAKGKKVVVIGGGDT--------GADCVG----TSLRHGAASVHQ 337 (517)
T ss_pred -----HHHHHHHHHH-HHHHCCCCCCC-CCCCCCEEECCCEEEEECCCCC--------CCHHHH----HHHHHHHHHHHH
T ss_conf -----3786554675-48560885366-6788735422867899757875--------622456----323554355230
Q ss_pred CCC
Q ss_conf 322
Q gi|254781043|r 247 MEF 249 (611)
Q Consensus 247 mEf 249 (611)
.|-
T Consensus 338 FE~ 340 (517)
T TIGR01317 338 FEI 340 (517)
T ss_pred CCC
T ss_conf 256
No 224
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=97.79 E-value=0.00013 Score=48.74 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCC--EEEEECC-CCEEEECCCCC
Q ss_conf 9999873123031131565200013443012468980587--0899506-72474157656
Q gi|254781043|r 160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG--EIHRFSA-KLVVLATGGYG 217 (611)
Q Consensus 160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G--~~~~i~A-kaVILATGG~~ 217 (611)
|.....+.+++|..++++.+|+.|+ +|++||... +.| .....+| |=|||+.|-+.
T Consensus 205 L~pA~kRpNle~~t~af~~ki~feg-~ratGVe~~--~ggst~~e~~~ankEVilsagain 262 (540)
T TIGR01810 205 LDPALKRPNLEVRTRAFVDKIVFEG-KRATGVEFK--KGGSTIKERVKANKEVILSAGAIN 262 (540)
T ss_pred HHHHHCCCCHHHHHHHHHEEEEECC-CEEEEEEEE--CCCCCCCCEECCCCEEEEECCHHH
T ss_conf 4466407872001422220003308-837998882--289733000012445788334121
No 225
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=97.76 E-value=0.0016 Score=41.60 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCC--CCCEEEEEEEECCCEEEEECC--CCEEEECCC
Q ss_conf 6789999998731230311315652000134--430124689805870899506--724741576
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSE--GCCVGVVAWQLETGEIHRFSA--KLVVLATGG 215 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~d--G~V~Gav~~~~~~G~~~~i~A--kaVILATGG 215 (611)
.|+..|.+-++.+||++..++.|++|.++.+ .+++-.+.+. ++|+-..|.= .-+|+.|-|
T Consensus 208 Sii~Pl~~~L~~~GV~F~~~t~Vtdi~~~~~~~~~~~t~i~~~-~~g~~~~i~l~~~DlVfvTnG 271 (500)
T pfam06100 208 SLVLPMIKYLKSHGVDFEYGTKVENIEVDISDSKKAAKKIAMT-RNGKEESIELTEDDLVFVTNG 271 (500)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCEEEEEEEEE-ECCCEEEEECCCCCEEEEECC
T ss_conf 7999999999978988978988999999627997388999999-489676775388888999788
No 226
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.71 E-value=6.2e-05 Score=50.87 Aligned_cols=156 Identities=18% Similarity=0.111 Sum_probs=77.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 5889899689999999999889829999868988521--04116534251378999999999998998458877999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH--TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~--s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
+|.|||+|+||++||..++++|.+|+|+||+.-.+|- |.--.|| .-|.-..+ +| ..-++..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g--------~~DhGAqY----fk-----~~~~~F~ 65 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG--------RFDHGAQY----FK-----PRDELFL 65 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHEECCCCC--------CCCCCCEE----EC-----CCCHHHH
T ss_conf 4799756368899999998669579999738875531100005786--------53455504----15-----7865799
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
.+++. +.+-|+.-. ...+.+..+ ++.+.. ...++. | +|..-+.+|.+ .+....+|..++.
T Consensus 66 ~~Ve~-------~~~~glV~~-W~~~~~~~~--~~~~~~----~~d~~p-y----vg~pgmsalak-~LAtdL~V~~~~r 125 (331)
T COG3380 66 RAVEA-------LRDDGLVDV-WTPAVWTFT--GDGSPP----RGDEDP-Y----VGEPGMSALAK-FLATDLTVVLETR 125 (331)
T ss_pred HHHHH-------HHHCCCEEE-CCCCCCCCC--CCCCCC----CCCCCC-C----CCCCCHHHHHH-HHHCCCHHHHHHH
T ss_conf 99999-------986785430-351110113--688899----888776-2----36743679999-8724504344223
Q ss_pred EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 65200013443012468980587089950672474157656
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
++++-.. ++ -.-+...+|. ....++.||||-=-..
T Consensus 126 Vt~v~~~-~~----~W~l~~~~g~-~~~~~d~vvla~PAPQ 160 (331)
T COG3380 126 VTEVART-DN----DWTLHTDDGT-RHTQFDDVVLAIPAPQ 160 (331)
T ss_pred HHHHEEC-CC----EEEEEECCCC-CCCCCCEEEEECCCCC
T ss_conf 1431233-87----1689846887-6455343899368875
No 227
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.67 E-value=0.00029 Score=46.50 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=49.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
-|-|||||.|||+||-.++..|.+|.|.|+.+..+ |+ +.+..|. |.--.+++.
T Consensus 308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~G--------Gv---L~YGIPe--------------FRLPK~IV~-- 360 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLG--------GV---LRYGIPE--------------FRLPNQLID-- 360 (944)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CE---EEECCCC--------------CCCCHHHHH--
T ss_conf 67998857689999999997799339994478788--------55---8955876--------------668789999--
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 998899999999869981327
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRN 119 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~ 119 (611)
..|+.|+.+||.|..+
T Consensus 361 -----~EI~~l~~lGV~f~~n 376 (944)
T PRK12779 361 -----DVVEKIKLLGGRFVKN 376 (944)
T ss_pred -----HHHHHHHHCCEEEEEC
T ss_conf -----9999999678399978
No 228
>PRK09897 hypothetical protein; Provisional
Probab=97.65 E-value=0.0014 Score=41.93 Aligned_cols=164 Identities=19% Similarity=0.236 Sum_probs=94.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 5889899689999999999889--82999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
-|-|||+|..|+..--++-+.+ .+|.|.||....+.+.-|+.+ +.-..|+..+ ++..+ |.+..
T Consensus 3 rIAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e-----------~ns~~mlaNI--as~EI--Ppi~~ 67 (535)
T PRK09897 3 KIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDE-----------ENSKMMLANI--ASIEI--PPIYC 67 (535)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC-----------CCHHHHHHHH--HCCCC--CCCHH
T ss_conf 079966786249999998646998269998215667789986854-----------4558887503--10558--85135
Q ss_pred HHHHHHH-HHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHH---HHHHHHHHHHHCC--CE
Q ss_conf 9999889-9999999869981327998551001464114567876564079866654266---7899999987312--30
Q gi|254781043|r 97 YLAMEAP-QSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHA---ILHTLYGQALKNN--AE 170 (611)
Q Consensus 97 ~~~~~a~-~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~---i~~~L~~~~~~~g--v~ 170 (611)
.|.+.-. .--++|++||+.=. .+..|.| .||+.. |.- -...|.+++++.| |.
T Consensus 68 t~~~WL~~q~~~~L~~~~id~~-----~l~~rqf------------lPRiLl-----GeYl~~QF~~Lve~a~~~G~~i~ 125 (535)
T PRK09897 68 TYLEWLQKQEASHLQRYGVKKE-----TLHDRQF------------LPRILL-----GEYFRDQFLRLVDQARQQKFAVA 125 (535)
T ss_pred HHHHHHHHCCHHHHHHCCCCHH-----HCCCCCE------------EHHHHH-----HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 6999987388878987199832-----2641010------------048888-----89999999999999986596699
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC-------CCCCCCCCC
Q ss_conf 3113156520001344301246898058708995067247415765-------654334210
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY-------GRAYFSATS 225 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~-------~~ly~~~t~ 225 (611)
|+..+.|+|+.-..+|... ...++ .....-..||||||=. .+-|+.|-.
T Consensus 126 Vh~~~~VtDi~~~~~gv~l-----~~~~~-~~~~~FD~vVIaTGH~WP~~~e~~~~YF~SPw 181 (535)
T PRK09897 126 VYESCQVTDLQITNAGVML-----ATNQD-LPSETFDLAVIATGHVWPDEEEATRTYFPSPW 181 (535)
T ss_pred EEECCEEEEEEECCCCEEE-----EECCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 9757666764436995599-----83378-87643207998079879987767766678999
No 229
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.65 E-value=0.002 Score=41.00 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCC---CCEEEEEEEECCCEEEEECC--CCEEEECCCC
Q ss_conf 67899999987312303113156520001344---30124689805870899506--7247415765
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSEG---CCVGVVAWQLETGEIHRFSA--KLVVLATGGY 216 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG---~V~Gav~~~~~~G~~~~i~A--kaVILATGG~ 216 (611)
.|+..|.+-++.+||++..++.|+++.++.++ +|.+.... ++|+-..|.= .-+|+.|-|.
T Consensus 227 Sii~Pl~~~L~~~GV~F~~~t~Vtdi~~~~~~~~~~vt~i~~~--~~g~~~~i~l~~~DlVfvTnGS 291 (577)
T PRK13977 227 SLVLPLIKYLEEHGVDFEYGTKVTDIDFDITGGKKTATAIHLT--DDGKEESIDLTEDDLVFVTNGS 291 (577)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCEEEEEEEEE--CCCCEEEEECCCCCEEEEECCC
T ss_conf 7999999999987987977998999898538997689999998--1896677761888889997886
No 230
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.65 E-value=8.6e-05 Score=49.93 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=31.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Q ss_conf 5889899689999999999889--82999986898852
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRS 54 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g 54 (611)
-|+|||+|+|||+||.++++.+ .+|.|+||.+..+|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 39998782888999999998589986799834887786
No 231
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=8.4e-05 Score=49.98 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=32.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 588989968999999999988982999986898852
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
-|.|+|+|+|||.||.+++++|.+|+|.|..+..+|
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 289974627888999999868985399842676686
No 232
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.64 E-value=9.3e-05 Score=49.69 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf 5889899689999999999889-8299998689885
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTR 53 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~ 53 (611)
.|+|||+|+|||++|+.++++| .+|.|+|+.+..+
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 899999448999999999853999889994289888
No 233
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.62 E-value=8.9e-05 Score=49.84 Aligned_cols=45 Identities=33% Similarity=0.464 Sum_probs=36.4
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCHHC
Q ss_conf 23105889899689999999999889829999868988--5210411
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT--RSHTVAA 59 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~--~g~s~~A 59 (611)
...+||||||+|+|||.||.+..+.|.+|+|+|-.... |+.+..+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEC
T ss_conf 88886899897268889999876468189998646776764677750
No 234
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.0012 Score=42.40 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=30.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCC
Q ss_conf 0588989968999999999988---98299998689885210
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEK---GFKTACITKVFPTRSHT 56 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~---G~~V~lieK~~~~~g~s 56 (611)
++|.|||+|.+|++.|.++.+. ..+|.|+|+.+-.+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 518997886579999999984788777567853555457875
No 235
>KOG0404 consensus
Probab=97.59 E-value=0.00033 Score=46.11 Aligned_cols=293 Identities=21% Similarity=0.312 Sum_probs=139.5
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
+.|...|.|||||.|+..|||-|+++.++-+|.|-... +||+ ..++..-
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~---------~~i~-pGGQLtT--------------------- 53 (322)
T KOG0404 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA---------NGIA-PGGQLTT--------------------- 53 (322)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEC---------CCCC-CCCEEEE---------------------
T ss_conf 41220389983580677789997650267568811111---------6868-8863456---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
+ .....|+|. | ..-+|..|+..|.++..+.|.+++.
T Consensus 54 -------------------------T----T~veNfPGF----------P-----dgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404 54 -------------------------T----TDVENFPGF----------P-----DGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred -------------------------E----ECCCCCCCC----------C-----CCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf -------------------------5----201348999----------7-----5456688999999888751646541
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC-CCCCCCCCCCEECCHHHHHHHHHCCC---CCCCCC
Q ss_conf 31565200013443012468980587089950672474157656-54334210640144488788751365---333322
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG-RAYFSATSAHTCTGDGAGMVARAGLP---LQDMEF 249 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~-~ly~~~t~~~~~tGdG~~mA~~aGa~---l~~mEf 249 (611)
++. .++-. .+++--++. . -..++|++||+|||--+ +|+.+. +|++. -|.-|.. +-|- +
T Consensus 90 EtV-skv~~--sskpF~l~t---d---~~~v~~~avI~atGAsAkRl~~pg------~ge~~--fWqrGiSaCAVCDG-a 151 (322)
T KOG0404 90 ETV-SKVDL--SSKPFKLWT---D---ARPVTADAVILATGASAKRLHLPG------EGEGE--FWQRGISACAVCDG-A 151 (322)
T ss_pred EEH-HHCCC--CCCCEEEEE---C---CCCEEEEEEEEECCCCEEEEECCC------CCCCH--HHHCCCCHHHCCCC-C
T ss_conf 002-22223--689769884---3---772453069992163012465478------77525--77636405312367-6
Q ss_pred CC-C--CCCCCCCCEEECCCCCCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCE-EHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 23-2--88844220143045665578089832686--125540765100475201-115688998817888888874688
Q gi|254781043|r 250 VQ-F--HPTGIYGAGCLITEGARGEGGYLVNSKGE--RFMERYAPSAKDLASRDV-VSRCMMMEIREGRGVGKSKDHIHL 323 (611)
Q Consensus 250 ~q-f--hPt~~~~~~~l~~~~~rg~G~~l~n~~Ge--rf~~~y~~~~~el~~rd~-~s~ai~~ei~~g~g~~~~~~~v~l 323 (611)
.. | .|+++.+-| ++.-| .|+.+|...---+.-||. .++-||.+-.+ .+..-.|..
T Consensus 152 apifrnk~laVIGGG---------------DsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~----~npnI~v~~ 212 (322)
T KOG0404 152 APIFRNKPLAVIGGG---------------DSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAE----KNPNIEVLY 212 (322)
T ss_pred CHHHCCCEEEEECCC---------------HHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHH----CCCCEEEEE
T ss_conf 521158745998586---------------7887899988741437999997124467789999875----399769993
Q ss_pred EECCCCHHHHHHHHHH--HHHHHHHHCCCCCCC-CEEEE---------ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 6111798999998537--999997643678654-40675---------20331001234215771585377888533227
Q gi|254781043|r 324 YLNHLDPAVLQERLPG--ISESARIFAGVDVTR-DPIPV---------IPTVHYNMGGIPTNYWGEVLDANSKNPERFAP 391 (611)
Q Consensus 324 d~~~~~~~~l~~~~~~--~~~~~~~~~g~D~~~-~~i~v---------~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~ 391 (611)
. ...+ +.+.. ..+..+. ..++-.. .-+|| .|+-.+.-|.+..|..|-++-..+. ..|+||
T Consensus 213 n-----t~~~-ea~gd~~~l~~l~i-kn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgt-s~Tsvp 284 (322)
T KOG0404 213 N-----TVAV-EALGDGKLLNGLRI-KNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGT-SLTSVP 284 (322)
T ss_pred C-----HHHH-HHCCCCCCCCCEEE-EECCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEECCCCEEEECCCC-CCCCCC
T ss_conf 1-----1220-02067140243698-74144750132024069971578266674273421367508962686-445565
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6034021220335664304764322222232156775566542
Q gi|254781043|r 392 GLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434 (611)
Q Consensus 392 GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~ 434 (611)
|+||||++ |-. -.|-. ..+.-.|-+|+-.|-+|..
T Consensus 285 G~FAAGDV-qD~---kyRQA----vTaAgsGciaaldAe~yL~ 319 (322)
T KOG0404 285 GVFAAGDV-QDK---KYRQA----VTAAGSGCIAALDAERYLT 319 (322)
T ss_pred CEEECCCC-CHH---HHHHH----HHHHCCCHHHHHHHHHHHH
T ss_conf 24531643-127---88998----8663353465404887743
No 236
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.57 E-value=0.00012 Score=48.96 Aligned_cols=33 Identities=36% Similarity=0.484 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf 588989968999999999988--982999986898
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFP 51 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~ 51 (611)
||+|||+|.|||+-|.++.+. +.+|+|||+.+-
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~ 35 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPG 35 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 98999952999999999974089981999978988
No 237
>KOG2665 consensus
Probab=97.51 E-value=0.00091 Score=43.21 Aligned_cols=180 Identities=22% Similarity=0.219 Sum_probs=89.4
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCC-CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 332310588989968999999999988--9829999868988521-0411653425137899999999999899845887
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSH-TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWL 89 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~-s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l 89 (611)
+....||++|||+|+-||..|-++.=+ +++|+|+||.....-+ |.--+|-|-|-.... +.|...-+ -.
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~-P~SLKAkl--------CV 114 (453)
T KOG2665 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYK-PGSLKAKL--------CV 114 (453)
T ss_pred CCCCCCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEEEEEEEEC-CCCCCHHH--------HH
T ss_conf 4456554799888432225567776317872577540001021551256665056434417-76600011--------03
Q ss_pred CCHHHHHHHHHH------------------HHHHHHHHHHCC----CCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 799999999998------------------899999999869----9813279985510014641145678765640798
Q gi|254781043|r 90 GDVDAIQYLAME------------------APQSVYELEHYG----VPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCA 147 (611)
Q Consensus 90 ~d~~lv~~~~~~------------------a~~~i~~Le~~G----v~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~ 147 (611)
--.+|.+.||++ -...++.|.+.| |+=-|--+|.-..+. .++-|.+-
T Consensus 115 ~G~~LlY~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~-----------EP~crgvk 183 (453)
T KOG2665 115 EGRELLYEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEM-----------EPYCRGVK 183 (453)
T ss_pred CCHHHHHHHHHHCCCCHHHCCEEEEEECHHHCCHHHHHHHHHHHCCCCCEEEECCCHHHHC-----------CHHHHHHH
T ss_conf 4299999985240797345063899717211503899997652259997065312113331-----------73554446
Q ss_pred E--CCCCC----HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCC-EEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 6--66542----66789999998731230311315652000134430-124689805870899506724741576
Q gi|254781043|r 148 A--ADRTG----HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC-VGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 148 ~--~d~tG----~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V-~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
+ .+.|| ..++..+.+.-...|.+++++..+..+-.+.++.. .-+++ .+|+...++.|.||-++|=
T Consensus 184 Al~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv---~ngk~ee~r~~~~vtc~gl 255 (453)
T KOG2665 184 ALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVV---LNGKGEEKRTKNVVTCAGL 255 (453)
T ss_pred HHCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEECCCHHCCCCCCCCCEEE---ECCCCCEEEEEEEEEECCC
T ss_conf 54488766043578999998889874541215641012010367888886699---4585522577678873363
No 238
>KOG1399 consensus
Probab=97.51 E-value=0.00016 Score=48.17 Aligned_cols=146 Identities=20% Similarity=0.181 Sum_probs=77.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
.-+|.|||+|.|||.+|..+.++|.+|+++|+....+|-=.+ ..+.. + ...-+++.++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y--------~~~~~-~-~~ss~Y~~l~------------ 63 (448)
T KOG1399 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY--------TENVE-V-VHSSVYKSLR------------ 63 (448)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEE--------CCCCC-C-CCCCHHHHHH------------
T ss_conf 785489785668889999998779983699705874545860--------57656-5-5432434210------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC--EEECC
Q ss_conf 9999889999999986998132799855100146411456787656407986665426678999999873123--03113
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNA--EFFIE 174 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv--~i~~~ 174 (611)
-+.++.+- .--.+||.-+ .++..+ +-.++..-|..-+...++ .+..+
T Consensus 64 ---tn~pKe~~--~~~dfpf~~~----------------------~~~~~p----~~~e~~~YL~~yA~~F~l~~~i~f~ 112 (448)
T KOG1399 64 ---TNLPKEMM--GYSDFPFPER----------------------DPRYFP----SHREVLEYLRDYAKHFDLLKMINFN 112 (448)
T ss_pred ---CCCCHHHH--CCCCCCCCCC----------------------CCCCCC----CHHHHHHHHHHHHHHCCHHHHEEEC
T ss_conf ---46884442--5799897545----------------------711178----8889999999998735834626734
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 1565200013443012468980587089950672474157656
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
+.++.+-...+|+=... ..+..++ ....-+++||+|||=+.
T Consensus 113 ~~v~~v~~~~~gkW~V~-~~~~~~~-~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399 113 TEVVRVDSIDKGKWRVT-TKDNGTQ-IEEEIFDAVVVCTGHYV 153 (448)
T ss_pred CCEEEEEECCCCCEEEE-EECCCCC-EEEEEEEEEEECCCCCC
T ss_conf 65799840567741689-8148864-05899638999556768
No 239
>PRK04965 nitric oxide reductase; Provisional
Probab=97.46 E-value=0.0037 Score=39.25 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC
Q ss_conf 5889899689999999999889--8299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~ 50 (611)
-|+|||+|+||++||-++.+.+ .+|+|+++.+
T Consensus 4 ~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~ 37 (378)
T PRK04965 4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (378)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 9999988299999999997119498699998999
No 240
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=97.43 E-value=0.0011 Score=42.72 Aligned_cols=191 Identities=21% Similarity=0.213 Sum_probs=99.0
Q ss_pred ECEEEECCCHHHHHHHHHHH--HCCCCEEEEECCCCC--CCCCHH--CCCCEEEE--CCCCCC------C---------C
Q ss_conf 05889899689999999999--889829999868988--521041--16534251--378999------9---------9
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMA--EKGFKTACITKVFPT--RSHTVA--AQGGIAAS--LANMTP------D---------S 74 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~--e~G~~V~lieK~~~~--~g~s~~--A~GGi~a~--~~~~~~------D---------s 74 (611)
+|||-||+|+=--+=++=++ |...+.+|||+.... .|++-| |+.|.+|. +.+.+. | .
T Consensus 1 ~DvvLvGAGIMSATLGvLLk~LeP~w~~~l~Erld~~A~ESS~pWNNAGTGHSALCELNYtP~~~dG~idi~kAv~ine~ 80 (487)
T TIGR01320 1 TDVVLVGAGIMSATLGVLLKELEPSWEITLIERLDAVALESSNPWNNAGTGHSALCELNYTPEVADGSIDIAKAVGINEQ 80 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 96788656166899999997309995389998607745466766001120136876422478876782653556220114
Q ss_pred ---HHHHHHHHHHHCCCCCCHHH----H--HHHHHHHHHHHHHHHH-----------CCCCCCCCCCCCEEEECCCCCCC
Q ss_conf ---99999989984588779999----9--9999988999999998-----------69981327998551001464114
Q gi|254781043|r 75 ---WQWHLYDTIKGSDWLGDVDA----I--QYLAMEAPQSVYELEH-----------YGVPFSRNEAGKIYQRPFGGHMQ 134 (611)
Q Consensus 75 ---~~~~~~Dt~~~g~~l~d~~l----v--~~~~~~a~~~i~~Le~-----------~Gv~f~r~~~G~~~~~~~gg~~~ 134 (611)
-.++-.-.+..| -|.|++- | -.|+.++ +-|.+|.+ -|+.|.-+++ ++..+ ..
T Consensus 81 F~VsrQFWa~lv~~G-~L~dp~~FiNpVPH~Sfv~G~-~~v~YLk~Ry~AL~~~~lF~~m~y~~d~~-~~a~~-----lP 152 (487)
T TIGR01320 81 FQVSRQFWAHLVEEG-VLEDPKSFINPVPHVSFVRGS-DGVAYLKKRYEALKKHPLFEGMEYSEDKA-TFAEW-----LP 152 (487)
T ss_pred CEECHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCEECCHH-HHHHH-----CC
T ss_conf 113188898998367-246854022788852026570-66799999999861784313750005868-99874-----25
Q ss_pred CCCCCCCC--CEEE-EECCCCCH---HHHHHHHHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECC-CEEEEECC
Q ss_conf 56787656--4079-86665426---6789999998731-2303113156520001344301246898058-70899506
Q gi|254781043|r 135 NYGEGPPV--QRTC-AAADRTGH---AILHTLYGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLET-GEIHRFSA 206 (611)
Q Consensus 135 ~~~~g~~~--~R~~-~~~d~tG~---~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~-G~~~~i~A 206 (611)
-+..|... |..+ ++.+.|=- ++.+-|.+.+... |+++.+++.|.+|=.+.||.=+ |.+.|.+| |+...|+|
T Consensus 153 LM~~gR~~~~pvA~~~~~~GTDvdFGalt~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~-vt~~d~r~PG~~~~l~a 231 (487)
T TIGR01320 153 LMAKGRDFSEPVAANWVAEGTDVDFGALTKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWV-VTVKDTRTPGGKRTLKA 231 (487)
T ss_pred CCCCCCCCCCHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCE-EEECCCCCCCCCEEEEE
T ss_conf 45687688634332120478400277899999999702898167638500011010588537-88412208887626766
Q ss_pred CCEEEECCCCC
Q ss_conf 72474157656
Q gi|254781043|r 207 KLVVLATGGYG 217 (611)
Q Consensus 207 kaVILATGG~~ 217 (611)
|.|=|-.||++
T Consensus 232 ~FvFlGAGG~A 242 (487)
T TIGR01320 232 RFVFLGAGGGA 242 (487)
T ss_pred EEEEEECCCCH
T ss_conf 77897157416
No 241
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.42 E-value=0.00029 Score=46.43 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCC
Q ss_conf 588989968999999999988------982999986898852
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEK------GFKTACITKVFPTRS 54 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~------G~~V~lieK~~~~~g 54 (611)
.|+|||+|++||+||..+.+. +.+|+|+|+.+..+|
T Consensus 3 ~vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG 44 (466)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (466)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 599989978999999999872555589986799977998867
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.34 E-value=0.0031 Score=39.76 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=32.9
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 87312303113156520001344301246898058708995067247415765654
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
..+.+|+++..+.++.+-.+. .+| . ..+|+. +.-..+|||||+-.+.
T Consensus 68 y~~~~I~l~~g~~v~~id~~~-~~V----~--l~~g~~--~~YD~LviATGa~p~~ 114 (400)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDT-REL----V--LTNGES--WHWDQLFIATGAAARP 114 (400)
T ss_pred HHHCCCEEECCCEEEEECCCC-CEE----E--ECCCCE--EECCEEEECCCCCCCC
T ss_conf 987896998898899971889-889----9--879988--8726058877888756
No 243
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.30 E-value=0.009 Score=36.71 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 8731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
..+.+|+++...- . +++. +.+ ..+..++....+.++.+|+|||.-.+
T Consensus 102 ~~~~~v~~i~G~a--~-f~~~-~~v----~V~~~~~~~~~i~a~~iiIATGs~p~ 148 (467)
T PRK07818 102 MKKNKITEIHGYG--T-FTDA-NTL----EVDLNDGGTETVTFDNAIIATGSSTR 148 (467)
T ss_pred HHHCCEEEEECEE--E-EECC-CEE----EEECCCCCEEEEEEEEEEECCCCCCC
T ss_conf 9867939994307--9-8248-513----89717896279995268987688766
No 244
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.26 E-value=0.014 Score=35.48 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=28.1
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
..+.+|+++...- .+ ++. ..| - .+..+|.-..++||.+|||||.-.
T Consensus 105 l~~~~v~~i~G~a--~f-~~~-~~v-~---V~~~~g~~~~i~a~~iIIATGs~P 150 (464)
T PRK05976 105 LKKGKVDVFHGIG--RI-LDG-KTV-S---VETATGENEMIIPENLLIATGSRP 150 (464)
T ss_pred HHHCCCEEEEEEE--EE-CCC-CCE-E---EECCCCCCEEEEECEEEECCCCCC
T ss_conf 9868928997268--86-589-811-4---442788736998266998768886
No 245
>pfam00996 GDI GDP dissociation inhibitor.
Probab=97.25 E-value=0.0005 Score=44.90 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=36.8
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 323105889899689999999999889829999868988521
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH 55 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~ 55 (611)
||.+|||||+|.|+.=+.-|..++..|.+|+.+++....+|.
T Consensus 1 m~eeyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~ 42 (439)
T pfam00996 1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGE 42 (439)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 998502999799879999999997369989997799877863
No 246
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=97.15 E-value=0.00048 Score=45.01 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=28.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 58898996899999999998898299998
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lie 47 (611)
.|.|||+|+||.=||+..|++|.+|+|-|
T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyE 30 (444)
T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEGVRVILYE 30 (444)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 36897188534689999984897279975
No 247
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.15 E-value=0.013 Score=35.58 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=26.7
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC---CCCCCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf 23421577158537788853322760340212203356---64304764322-222232156775566
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH---GANRLGSNSLI-DLVVFGRAAVIRASE 431 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h---Ganrlggnsl~-~~~vfG~~Ag~~aa~ 431 (611)
|+|.||.. ++|++|+.||||+|+ ...| |.+.. ..|. .+.-.|++|+.+++.
T Consensus 261 g~I~Vde~----------~~Ts~~~IyA~GD~~-~~~~~~~~~~~~--~~l~~~A~~~g~iaa~n~~g 315 (443)
T PRK09564 261 GAIIVDEY----------GETSIENIYSAGDCA-TVYNIVSGKNVY--VPLATTANKLGRIVGENLAG 315 (443)
T ss_pred CEEEECCC----------CCCCCCCEEEEECCH-HHCCCCCCCCEE--EEHHHHHHHHHHHHHHHHCC
T ss_conf 97986898----------027889999996573-103555788568--65478899998999986059
No 248
>KOG0685 consensus
Probab=97.14 E-value=0.00084 Score=43.44 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=36.4
Q ss_pred CCCCCCCCCEE-----EEEECEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCC
Q ss_conf 20005344133-----23105889899689999999999889-82999986898852
Q gi|254781043|r 4 SSNLKSSYTYV-----DHSYDVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTRS 54 (611)
Q Consensus 4 ~~~~~~~~~~~-----d~~~DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~g 54 (611)
++.|...++.. ..+.-|+|||+|+|||+||.++-++| .+|+|+|-....+|
T Consensus 3 ~~~~s~~~~~~~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685 3 EPVMSALSGTGSGLKARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCCCCHHCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 633102124433542457964999898567799999999828964899970466675
No 249
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.10 E-value=0.00038 Score=45.72 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=43.8
Q ss_pred HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEEC--------------CCEEEEECCCCEEEECCCC
Q ss_conf 998731230311315652000134430124689805--------------8708995067247415765
Q gi|254781043|r 162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE--------------TGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~--------------~G~~~~i~AkaVILATGG~ 216 (611)
+.+++.||++..-+.-++++.|++|+|.|+.+..++ .|+++.+.+..||+|-|=-
T Consensus 619 ~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le~D~VI~AIGq~ 687 (993)
T PRK12775 619 RHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELECDTVIYALGTK 687 (993)
T ss_pred HHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCC
T ss_conf 879865939996269716786588639899999816679898889478678854888879999957799
No 250
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=97.09 E-value=0.0011 Score=42.60 Aligned_cols=33 Identities=45% Similarity=0.670 Sum_probs=30.0
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 058898996899999999998898299998689
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
+|++|||+|-||+-||+.+++.|.++.++....
T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~~ 33 (630)
T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLNL 33 (630)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEECH
T ss_conf 906886176200356777654175134554041
No 251
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.08 E-value=0.021 Score=34.24 Aligned_cols=49 Identities=31% Similarity=0.377 Sum_probs=28.1
Q ss_pred HHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 9998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 161 YGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 161 ~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+.+.+.||+++...- .+ .+ ++++. +. ..++. ..|+|+.+|||||.-.+
T Consensus 99 ~~~l~~~gv~~i~G~a--~f-~~-~~~v~-V~---~~~~~-~~~~a~~iIIATGs~P~ 147 (462)
T PRK06416 99 EGLLKKNKVDIIRGEA--KL-VD-PNTVR-VK---GEDGE-QTYTAKNIILATGSRPR 147 (462)
T ss_pred HHHHHHCCCEEEEEEE--EE-EC-CCEEE-EE---ECCCC-EEEEECEEEECCCCCCC
T ss_conf 9999877978998389--98-12-76045-55---36996-69994869999899887
No 252
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.06 E-value=0.022 Score=34.16 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
..+.+|+++...-- +.+ .++|. ....+|.-..++|+.+|+|||.-.
T Consensus 103 ~~~~~v~~i~G~a~---f~~-~~~v~----V~~~~g~~~~i~a~~iiIATGs~P 148 (466)
T PRK06115 103 FRKNKVDWIKGWGR---LDG-VGKVV----VKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred HHHCCCEEEEEEEE---EEC-CCCEE----EECCCCCEEEEEEEEEEECCCCCC
T ss_conf 86189479952599---954-99418----985899779999568999989987
No 253
>KOG2852 consensus
Probab=97.06 E-value=0.0038 Score=39.14 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=92.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCC------CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 05889899689999999999889------829999868988521041165342513789999999999989984588779
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKG------FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G------~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
--|+|||+|+-|+++|.-+++++ ..|.++|+..+..+.|.-|+| +-+. .|+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasg-fLa~----------------------wc~ 67 (380)
T KOG2852 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASG-FLAK----------------------WCQ 67 (380)
T ss_pred EEEEEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCH-HHHH----------------------HHC
T ss_conf 07999888704664200344287667784159999603434355664104-5676----------------------637
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HCCCC----CCCC---CCCCEEEECCCCCCCCCCCCCCCCEEE--EECCCCC--
Q ss_conf 9999999998899999999-------86998----1327---998551001464114567876564079--8666542--
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELE-------HYGVP----FSRN---EAGKIYQRPFGGHMQNYGEGPPVQRTC--AAADRTG-- 153 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le-------~~Gv~----f~r~---~~G~~~~~~~gg~~~~~~~g~~~~R~~--~~~d~tG-- 153 (611)
+..+..++.-|.+.-+.|. .||.. |+.. ++-...-++.|-.|.. +..+...- -..+.|+
T Consensus 68 ~s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~---~e~v~~~ssiG~t~ttaqv 144 (380)
T KOG2852 68 PSIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQ---RERVQKCSSIGSTNTTAQV 144 (380)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHH---HHHHHHHEECCCCCCCCEE
T ss_conf 8653223577788888777762684444522432799996024478666776525555---6775100013687753011
Q ss_pred --HHHHHHHHHHHHHCC-CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf --667899999987312-3031131565200013443012468980587089950672474157656543
Q gi|254781043|r 154 --HAILHTLYGQALKNN-AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY 220 (611)
Q Consensus 154 --~~i~~~L~~~~~~~g-v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly 220 (611)
.-..+.|+.++++.+ |++.... +.++ .|+.+|+.++.- ....+.++...+..+|+|.|-+..-+
T Consensus 145 hP~lFc~~i~sea~k~~~V~lv~Gk-v~ev-~dEk~r~n~v~~-ae~~~ti~~~d~~~ivvsaGPWTskl 211 (380)
T KOG2852 145 HPYLFCHFILSEAEKRGGVKLVFGK-VKEV-SDEKHRINSVPK-AEAEDTIIKADVHKIVVSAGPWTSKL 211 (380)
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEEE-EEEE-ECCCCCCCCCCH-HHHCCCEEEEEEEEEEEECCCCCHHH
T ss_conf 7899999999998862676899866-6886-324461215402-33048437834238999527873321
No 254
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864 Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=97.05 E-value=0.0051 Score=38.30 Aligned_cols=208 Identities=20% Similarity=0.265 Sum_probs=95.8
Q ss_pred EEECEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCC--CHHHHHHHHHHHCCCC---
Q ss_conf 310588989968999999999988-9829999868988521041165342513789999--9999999899845887---
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEK-GFKTACITKVFPTRSHTVAAQGGIAASLANMTPD--SWQWHLYDTIKGSDWL--- 89 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~-G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~D--s~~~~~~Dt~~~g~~l--- 89 (611)
..||++|||+|..||-|-+.|+.. -.+|.+|+-....+---.+|-||.....+-.+.. -.-..+.|+++.+.|.
T Consensus 2 ~a~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q~~hGPP~~aalGGtCvnvGCvPkklmvtGa~ymd~~resaGfGWe 81 (486)
T TIGR01423 2 KAYDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQKVHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CEEEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEE
T ss_conf 40578998247774100101233210316899842247993000108726872343630011005788888762376400
Q ss_pred CCHHHHH----HHHHHHHHHHHHH-HHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEE---ECCCCCHHHHHHHH
Q ss_conf 7999999----9999889999999-98699813279985510014641145678765640798---66654266789999
Q gi|254781043|r 90 GDVDAIQ----YLAMEAPQSVYEL-EHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCA---AADRTGHAILHTLY 161 (611)
Q Consensus 90 ~d~~lv~----~~~~~a~~~i~~L-e~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~---~~d~tG~~i~~~L~ 161 (611)
-|.+.++ .+..--..++... +.+--.| ++..|.....-||.-.. ..++. .+|- .....
T Consensus 82 ~d~~~~~~nWk~liaakn~av~~in~sye~mf-~dteGl~f~~G~Gal~~--------~~~v~vre~adP-----~s~v~ 147 (486)
T TIGR01423 82 LDAESVKANWKALIAAKNKAVLDINDSYEDMF-KDTEGLEFFLGFGALED--------KNVVLVRESADP-----KSKVK 147 (486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCEECC--------CCEEEEECCCCC-----HHHHH
T ss_conf 03245446678999876677776765577774-10244022201120014--------757999627885-----25786
Q ss_pred HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC-C-----CCCCCCCCCCCEECCHHHH
Q ss_conf 998731230311315652000134430124689805870899506724741576-5-----6543342106401444887
Q gi|254781043|r 162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG-Y-----GRAYFSATSAHTCTGDGAG 235 (611)
Q Consensus 162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG-~-----~~ly~~~t~~~~~tGdG~~ 235 (611)
+++...-|-+-...+...|-++++..|+ ..+-.||.=.++.-+|+-|| | +++| |+.-..|--..
T Consensus 148 e~l~~e~i~~atGsWPq~l~i~G~~~Ci------~sneafyl~e~P~r~l~vGGG~is~efaGif----nayk~~GG~v~ 217 (486)
T TIGR01423 148 ERLDAEYILLATGSWPQMLKIEGIELCI------SSNEAFYLEEAPKRVLTVGGGYISVEFAGIF----NAYKAVGGKVD 217 (486)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCCCEEE------ECCCCEECCCCCCEEEEECCCEEEEEEEEHH----HHHCCCCCEEE
T ss_conf 5104335999716773200356642033------0232010047885489864747998620012----32315797589
Q ss_pred HHHHHCCCCCCC
Q ss_conf 887513653333
Q gi|254781043|r 236 MVARAGLPLQDM 247 (611)
Q Consensus 236 mA~~aGa~l~~m 247 (611)
++||--.-|+..
T Consensus 218 l~yr~~~ilrGf 229 (486)
T TIGR01423 218 LAYRNDMILRGF 229 (486)
T ss_pred EEECCCEEEECC
T ss_conf 987387033032
No 255
>PRK06116 glutathione reductase; Validated
Probab=97.04 E-value=0.017 Score=34.90 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 98731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 163 ~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
.+.+.+|+++...- . +++. .+|. .+|+ .|+||.+|||||.-.+
T Consensus 102 ~~~~~~V~~~~g~a--~-f~~~-~tv~-------v~~~--~i~a~~ivIATGs~p~ 144 (450)
T PRK06116 102 GLENNGVDLIEGFA--R-FVDA-HTVE-------VNGE--TYTADHILIATGGRPS 144 (450)
T ss_pred HHHHCCCEEEEEEE--E-ECCC-CCCC-------CCCE--EEEEEEEEECCCCCCC
T ss_conf 98768968997068--8-7268-7403-------5982--9854179998789775
No 256
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=96.98 E-value=0.0012 Score=42.48 Aligned_cols=280 Identities=19% Similarity=0.205 Sum_probs=130.1
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 588989968999999999988--982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
||+|||+|+||+--|+++.++ ..+|+|||-+....||=.|+- +.+ |+-.. ...++-
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWSf--fd~---------------Dls~~-----qhawla 58 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWSF--FDA---------------DLSDA-----QHAWLA 58 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEE--ECC---------------CCCHH-----HHHHHH
T ss_conf 97887273357899998752598728999843776688753010--036---------------66743-----577765
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCE-EECC
Q ss_conf 9999889999999986998132799855100146411456787656407986665426678999999873-1230-3113
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAE-FFIE 174 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~-i~~~ 174 (611)
.|+.. +| ++| |. .+|+-|..... +.|-. -|... +.+.+.+ .+=. ++.+
T Consensus 59 ~lv~~-----~W-----------pgG-Ye-VRFp~~rrkL~-------taY~S-~tStr----f~e~l~q~fpe~s~~~~ 108 (392)
T TIGR01789 59 DLVVY-----DW-----------PGG-YE-VRFPKRRRKLK-------TAYLS-MTSTR----FREELEQKFPERSVLLD 108 (392)
T ss_pred HHCCC-----CC-----------CCC-CE-ECCHHHHHHHH-------CCCCC-CHHHH----HHHHHHHHCCCCEEEEC
T ss_conf 34013-----28-----------897-13-33555543321-------02211-00177----89999987687205640
Q ss_pred CEEEEEEECCCCCCEEEEEEE-ECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH--CCCCCCCCCCC
Q ss_conf 156520001344301246898-058708995067247415765654334210640144488788751--36533332223
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQ-LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA--GLPLQDMEFVQ 251 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~-~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a--Ga~l~~mEf~q 251 (611)
..++++ +.|+ |.++ -.-|.-.+|+|++||=|=|+ +++ | ++...+++ |-+++=
T Consensus 109 r~a~~~--~Ad~-----V~L~PsqyG~g~~i~A~~VID~Rg~-----~P~--~------~L~~GfQ~FlG~e~RL----- 163 (392)
T TIGR01789 109 RKAVEV--DADA-----VDLEPSQYGNGRVIRARAVIDARGF-----KPS--A------ALKVGFQVFLGREVRL----- 163 (392)
T ss_pred CEEEEE--EECE-----EEECCCCCCCCCEEEEEEEEECCCC-----CCC--C------CCCCCHHHHHCCCHHC-----
T ss_conf 156776--6075-----6626544689626764027725888-----777--2------1025323442320001-----
Q ss_pred CCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH
Q ss_conf 28884422014304566557808983268612554076510047520111568899881788888887468861117989
Q gi|254781043|r 252 FHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPA 331 (611)
Q Consensus 252 fhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~ 331 (611)
-.|-|+-.|= .|- +....-.--=|.-|-||+- .--|.+.++ +.| +.=|.|--.|+++
T Consensus 164 ~~PHGl~~Pi-iMD-ATVdQ~~PhGnGGgYRFVY-----~LPL~~~~l-----lIE-----------DTyY~D~~~L~~~ 220 (392)
T TIGR01789 164 AEPHGLESPI-IMD-ATVDQSDPHGNGGGYRFVY-----VLPLDAQEL-----LIE-----------DTYYADDAELDEE 220 (392)
T ss_pred CCCCCCCCCE-EEC-CCHHHCCCCCCCCCEEEEE-----ECCCCCCEE-----EEE-----------EEEECCCCCCCHH
T ss_conf 5788888870-425-6242117787987402788-----647987501-----366-----------3000588838789
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC-C--EEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 99998537999997643678654-4--06752033100123421577158537788853322760340212203356643
Q gi|254781043|r 332 VLQERLPGISESARIFAGVDVTR-D--PIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGAN 408 (611)
Q Consensus 332 ~l~~~~~~~~~~~~~~~g~D~~~-~--~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGan 408 (611)
.+..+...+- ..+.|.--.+.+ | -+|| +.+|=.+-.+ .+..+||+=-+|=.| +=+|
T Consensus 221 ~l~qrI~~YA-~a~gW~~~t~~r~EqGvLPv------~l~GD~sa~~----------~~~~~PG~a~~Glra-gl~H--- 279 (392)
T TIGR01789 221 ALRQRIDDYA-LAKGWQLATLVREEQGVLPV------LLAGDSSAYV----------DKVDIPGLAIAGLRA-GLVH--- 279 (392)
T ss_pred HHHHHHHHHH-HHCCCCHHHHHHHHCCCCCE------EECCCCHHCC----------CCCCCCCCCHHHHHH-CCCC---
T ss_conf 8854789998-64286101267653586623------0158730112----------477889740135530-2447---
Q ss_pred CCCCCCCCCCC
Q ss_conf 04764322222
Q gi|254781043|r 409 RLGSNSLIDLV 419 (611)
Q Consensus 409 rlggnsl~~~~ 419 (611)
.+.|.||..++
T Consensus 280 P~TgYslp~AV 290 (392)
T TIGR01789 280 PTTGYSLPVAV 290 (392)
T ss_pred CCCCCCHHHHH
T ss_conf 74135578999
No 257
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=96.97 E-value=0.00094 Score=43.14 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=30.0
Q ss_pred ECEEEECCCHHHHHHHHHHHH----CCCCEEEEEC--CCCCCC
Q ss_conf 058898996899999999998----8982999986--898852
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAE----KGFKTACITK--VFPTRS 54 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK--~~~~~g 54 (611)
|||+|+|||+.|+.-|.++.. +.+||+|||- .+-.+|
T Consensus 1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l~s 43 (481)
T TIGR01989 1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKLKS 43 (481)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHH
T ss_conf 9289888857899999997318732023067865234823421
No 258
>PRK06370 mercuric reductase; Validated
Probab=96.95 E-value=0.021 Score=34.30 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=29.8
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~ 431 (611)
.||..|..|.+. . ++.++|++||.||||+|. ++. .|... +...|++|++++..
T Consensus 280 ~gv~~d~~G~I~-V-d~~~~Ts~p~IyA~GDv~-g~~----~lah~----A~~eg~~a~~n~~~ 332 (459)
T PRK06370 280 AGVATDARGYIK-V-DDQLRTTNPGIYAAGDCN-GRG----AFTHT----AYNDAEIVAANLLD 332 (459)
T ss_pred CCCCCCCCCCEE-E-CCCCEECCCCEEEEECCC-CCC----CCCCH----HHHHHHHHHHHHHC
T ss_conf 386328998588-7-997563787449831146-886----77458----99999999999836
No 259
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.93 E-value=0.028 Score=33.47 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 033100123421577158537788853322760340212203356643047643222222321567755665420
Q gi|254781043|r 361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK 435 (611)
Q Consensus 361 p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~ 435 (611)
|...+.-+.+..|..|.++- +++++|+|||+||||+|....+ | -..-++-.|.+|+.+|.+|.-+
T Consensus 450 Pnt~~l~~~v~l~~~G~I~v--D~~~~TnvpGVFAAGDvt~~~~----k----Qi~~A~G~Ga~AAlsA~~Yl~r 514 (515)
T TIGR03140 450 PNTEWLKDAVELNRRGEIVI--DERGRTSVPGIFAAGDVTTVPY----K----QIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCHHHHHCHHCCCCCCEEEC--CCCCCCCCCCEEEEEECCCCCC----C----EEEEEHHHHHHHHHHHHHHHHC
T ss_conf 66256515111079973982--9987079998798566738986----6----7878666479999999998734
No 260
>PRK10262 thioredoxin reductase; Provisional
Probab=96.90 E-value=0.0007 Score=43.97 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=33.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8853322760340212203356643047643222222321567755665420265
Q gi|254781043|r 384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP 438 (611)
Q Consensus 384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~ 438 (611)
+.++|+|||+||||+|. .+.+ | -..-++-.|.+|+.+|.+|++..+.
T Consensus 273 ~~~~TsipGifAaGDv~-~~~~---~----qv~~Avg~G~~Aa~~a~~yL~~~~~ 319 (321)
T PRK10262 273 NATQTSIPGVFAAGDVM-DHIY---R----QAITSAGTGCMAALDAERYLDGLAD 319 (321)
T ss_pred CCCCCCCCCEEEEEECC-CCCC---C----EEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 87768989989999477-8988---7----6878078589999999999975411
No 261
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.84 E-value=0.038 Score=32.61 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=30.8
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~ 431 (611)
-||.+|.+|.+. .++.++|++||.||||+|. ++.. |... +.-.|++|+.++..
T Consensus 294 ~Gv~l~~~G~I~--vd~~~~Ts~p~IyA~GDv~-g~~~----l~~~----A~~eg~~a~~~~~g 346 (475)
T PRK06327 294 VGLKLDERGFIP--VDDHCRTNVPNVYAIGDVV-RGPM----LAHK----AEEEGVAVAERIAG 346 (475)
T ss_pred CCCCCCCCCCCC--CCCCCCCCCCCEEECCCCC-CCCC----CHHH----HHHHHHHHHHHHCC
T ss_conf 387447899865--6997546997538710147-8877----7559----99999999998669
No 262
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.84 E-value=0.00067 Score=44.08 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=33.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 0588989968999999999988982999986898852
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
--|-|||||.|||+||..+++.|.+|+|+||.+..+|
T Consensus 144 kkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG 180 (472)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGG 180 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9899989778999999999866975899725777775
No 263
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.78 E-value=0.042 Score=32.32 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=30.2
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~ 431 (611)
.||.+|.+|.+. .++.++|++||.||||+|. ++. -|... +...|++|+.++..
T Consensus 278 ~gi~ld~~G~I~--VD~~~~Ts~p~IyA~GDv~-g~~----~la~~----A~~qg~~a~~~i~~ 330 (460)
T PRK06292 278 TGIELDERGRPV--VDPHTQTNVPGIYAAGDVN-GGP----PLLHE----AADEGIIAAENAAY 330 (460)
T ss_pred CCCCCCCCCCCC--CCCCCCCCCCCEEEECCCC-CCC----CCHHH----HHHHHHHHHHHHHC
T ss_conf 186317999881--4887302887358740357-887----76789----99999999999727
No 264
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.72 E-value=0.037 Score=32.71 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=30.7
Q ss_pred HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 9999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r 160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
+.+...+.+|+++...- .+ ++. .+| ..+..+|....+.|+.+|||||.-.
T Consensus 101 ~~~~l~~~gv~~i~G~a--~f-~~~-~~v----~V~~~dg~~~~i~a~~iIIATGs~p 150 (465)
T PRK05249 101 RRGFYARNRVEVIQGRA--SF-VDP-HTV----EVECPDGSVETLTAEKIVIATGSRP 150 (465)
T ss_pred HHHHHHHCCCEEEEEEE--EE-CCC-CCE----EEECCCCCEEEEEEEEEEEECCCCC
T ss_conf 99999868978998478--97-279-840----4434899628998427999537524
No 265
>PRK11749 putative oxidoreductase; Provisional
Probab=96.63 E-value=0.0013 Score=42.23 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=32.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 588989968999999999988982999986898852
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
-|.|||||.|||+||..+++.|.+|+|+||.+..+|
T Consensus 142 kVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GG 177 (460)
T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177 (460)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 899989678999999999976984799704787875
No 266
>PRK12831 putative oxidoreductase; Provisional
Probab=96.60 E-value=0.0013 Score=42.16 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=32.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 588989968999999999988982999986898852
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
-|-|||||.|||+||..++..|.+|.|.||.+..+|
T Consensus 142 kVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG 177 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGG 177 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 899989768999999999976991799827888898
No 267
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.56 E-value=0.0016 Score=41.62 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=44.5
Q ss_pred CCCCCCCCCEEECCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2342157715853778--88533227603402122033566430476432222223215677556654202
Q gi|254781043|r 368 GGIPTNYWGEVLDANS--KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~--~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~ 436 (611)
-||.+|.||.+...+. .+.+|++||.||+|++. +| ......++-.||.|++++.+|....
T Consensus 576 ~giel~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v----~G-----~stVV~AI~~Gr~AA~sI~~yl~~k 637 (639)
T PRK12809 576 SGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAV----HG-----ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCEEECCCCCEECCCCCCCCCCCCCCCEEECCCCC----CC-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78558899988617877767668999999827878----67-----3699999999999999999998740
No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=96.53 E-value=0.0075 Score=37.23 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEECCCHHHHHHHHHHH----HCCCCEEEEECCC
Q ss_conf 889899689999999999----8898299998689
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMA----EKGFKTACITKVF 50 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~----e~G~~V~lieK~~ 50 (611)
++|||-|+||.++==+.. +...+++|+..-|
T Consensus 1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP 35 (813)
T TIGR02374 1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEP 35 (813)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 97870474103477767512101773089982588
No 269
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.51 E-value=0.0015 Score=41.75 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=42.0
Q ss_pred CCCCCCCCCEEECCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2342157715853778--885332276034021220335664304764322222232156775566542
Q gi|254781043|r 368 GGIPTNYWGEVLDANS--KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~--~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~ 434 (611)
-||.+|.||++.-... .+.+|++||+||+|++.. |...+..++-.||.|++++.+|+.
T Consensus 593 ~gl~~~~~G~I~~d~~~~~~~~Ts~pgVFAgGD~v~---------G~stVV~Ai~~Gr~AA~aId~yLg 652 (654)
T PRK12769 593 HGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVR---------GADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCC---------CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 681376999887367777654489999898078566---------828999999999999999999868
No 270
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.49 E-value=0.066 Score=31.06 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=26.3
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 234215771585377888533227603402122033566430476432222223215677556
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS 430 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa 430 (611)
+||.||. .++|++|+.||+|+|. ++. .|...+ .-.|++|+.++.
T Consensus 285 ~gI~Vd~----------~~~Ts~p~IyA~GDv~-g~~----~l~h~A----~~~g~~aa~~~~ 328 (458)
T PRK06912 285 KGISVNE----------HMQTNVPHIYACGDVI-GGI----QLAHVA----FHEGTTAALHAS 328 (458)
T ss_pred CCEECCC----------CCCCCCCEEEEEECCC-CCC----CCCHHH----HHHHHHHHHHHC
T ss_conf 9547466----------6676876499962378-987----773289----999999999757
No 271
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.47 E-value=0.0022 Score=40.77 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 588989968999999999988982999986898852
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
-|.|||||.|||+||.-++..|.+|.|.||.+..+|
T Consensus 195 kVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GG 230 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 799968378999999999977990699815888898
No 272
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=96.43 E-value=0.071 Score=30.84 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf 23421577158537788853322760340212203356643047643222-22232156775566542
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLID-LVVFGRAAVIRASEMID 434 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~-~~vfG~~Ag~~aa~~~~ 434 (611)
|-|+||.+ ++|+|||.||+||+. ++. .|+- |.--|.+|+++++....
T Consensus 301 G~i~vd~~----------~~Tnv~~IYAIGDv~-gg~---------mLAH~A~~eG~vAAe~iaG~~~ 348 (481)
T TIGR01350 301 GRIVVDEY----------MRTNVPGIYAIGDVI-GGP---------MLAHVASHEGIVAAENIAGKEP 348 (481)
T ss_pred CEEEECCE----------EEECCCCEEEEEECC-CCC---------HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 81887983----------251689666887347-870---------2689999878999999818761
No 273
>pfam00732 GMC_oxred_N GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
Probab=96.37 E-value=0.0067 Score=37.57 Aligned_cols=56 Identities=32% Similarity=0.305 Sum_probs=42.9
Q ss_pred HHHHHCCCEEECCCEEEEEEECCC-CCCEEEEEEEECCCEEEEECC-CCEEEECCCCC
Q ss_conf 998731230311315652000134-430124689805870899506-72474157656
Q gi|254781043|r 162 GQALKNNAEFFIEYFALDLIINSE-GCCVGVVAWQLETGEIHRFSA-KLVVLATGGYG 217 (611)
Q Consensus 162 ~~~~~~gv~i~~~~~~~~Li~d~d-G~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~ 217 (611)
..+.+.+.+++.++.|++++.+++ ++++||.+.+...+..+.+.| |-||||+|-++
T Consensus 135 ~~~~~~nl~v~t~~~V~rI~~~~~~~rA~GV~~~~~~~~~~~~~~a~keVILsAGai~ 192 (218)
T pfam00732 135 RPALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITAAKEVVVAAGALN 192 (218)
T ss_pred CHHHCCCEEEECCCEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCEEEECCCHHH
T ss_conf 4212162688507679899992688889999999899988999998999999198587
No 274
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.36 E-value=0.079 Score=30.55 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~ 431 (611)
.||.+|..|.+. .++.++|++||.||+|+|. ++. .|... +...|++|+.++..
T Consensus 285 ~gv~~~~~G~I~--vd~~~rTs~~~IyA~GDv~-g~~----~l~h~----A~~qg~ia~~n~~g 337 (467)
T PRK07845 285 VGVELGPGGHIT--VDRVSRTSVPGIYAAGDCT-GVL----PLASV----AAMQGRIAMYHALG 337 (467)
T ss_pred CCCCCCCCCCCC--CCCCCCCCCCEEEEEECCC-CCC----CCHHH----HHHHHHHHHHHHHC
T ss_conf 187547788566--7987665877099970457-886----76558----99999999999707
No 275
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=96.31 E-value=0.0085 Score=36.88 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCC---CCHHHHHHHHHHH
Q ss_conf 85332276034021220335664304764-3222222---3215677556654
Q gi|254781043|r 385 NPERFAPGLMAIGEAGCASVHGANRLGSN-SLIDLVV---FGRAAVIRASEMI 433 (611)
Q Consensus 385 ~~~t~i~GLyAaGe~a~~g~hGanrlggn-sl~~~~v---fG~~Ag~~aa~~~ 433 (611)
+++|+|||+||||||-+ + ++-+..+ .|-+|+.+|.+|+
T Consensus 280 ~~~Tsv~GvFAAGDv~~-----------kW~~rQ~vTAag~G~~AA~~a~~yL 321 (321)
T TIGR01292 280 TMRTSVPGVFAAGDVRD-----------KWGFRQAVTAAGDGCIAALSAERYL 321 (321)
T ss_pred EEECCCCCEEEEEEEEC-----------CCCCEEEEEEECHHHHHHHHHHHHC
T ss_conf 12306686897304406-----------8861376787000689999998709
No 276
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=96.26 E-value=0.0026 Score=40.23 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=39.7
Q ss_pred C-CCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2-34215771585377888533227603402122033566430476432222223215677556654
Q gi|254781043|r 368 G-GIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI 433 (611)
Q Consensus 368 G-Gi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~ 433 (611)
+ +|.++.||-++ .+++.+|+|||.||.||+.- |+....-++-.|++|++++-+|+
T Consensus 407 ~r~lkt~~~GTIv--VdE~~~TsipGVfAGGD~i~---------G~atVi~Amg~GkrAAk~I~eYl 462 (462)
T TIGR01316 407 SRSLKTSKRGTIV--VDEDLETSIPGVFAGGDVIR---------GEATVILAMGDGKRAAKAIDEYL 462 (462)
T ss_pred CCEEEECCCCCEE--ECCCCCCCCCCEEECCCEEE---------CCCEEEEECCCCHHHHHHHHHCC
T ss_conf 7333345886578--74763047675742672774---------58669985003568999874229
No 277
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=96.25 E-value=0.09 Score=30.18 Aligned_cols=167 Identities=18% Similarity=0.241 Sum_probs=95.1
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEE-ECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 31058898996899999999998898299998689885210411653425-13789999999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAA-SLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a-~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
|++-|-|||+|.|||-=.-=+.++|.+.+||||-...- -.|=|-| +| |.-+.|.|+.-. +++.+
T Consensus 1 MkTqVaIiG~GPsGLLLGQLLh~~GId~viLEr~~~dY-----VlgRIRAGvL--------E~g~v~LL~~ag--v~~Rm 65 (393)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDTVILERKSRDY-----VLGRIRAGVL--------EQGTVDLLREAG--VDERM 65 (393)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHH-----HHHHHCCCHH--------HHHHHHHHHHHH--HHHHH
T ss_conf 95179997577357899999986698589972357223-----4332101235--------789999998722--32234
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542-66789999998731230311
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i~~~L~~~~~~~gv~i~~ 173 (611)
-+ +=|.+-|+.+.- +|......+-.|+. |. .-++| | .++++=|++.-.+.|..+++
T Consensus 66 ~~----------eG~~H~G~~ia~--~g~~~riDl~~~tG----G~--~V~VY-----GQTEvtrDL~~ARe~~G~~~v~ 122 (393)
T TIGR02360 66 DR----------EGLVHEGIEIAF--DGQRFRIDLKALTG----GK--TVMVY-----GQTEVTRDLYEAREQAGLKTVY 122 (393)
T ss_pred HH----------CCCCCCCEEEEC--CCCEEECCHHHHCC----CC--EEEEE-----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 53----------587325654501--78242000766058----97--89997-----6615778899999863895564
Q ss_pred CCEEEEEEECCCC-CCEEE-EEEEECCCEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 3156520001344-30124-68980587089950672474157656543342
Q gi|254781043|r 174 EYFALDLIINSEG-CCVGV-VAWQLETGEIHRFSAKLVVLATGGYGRAYFSA 223 (611)
Q Consensus 174 ~~~~~~Li~d~dG-~V~Ga-v~~~~~~G~~~~i~AkaVILATGG~~~ly~~~ 223 (611)
+..-++ ++|-++ +=.|+ |.| .++|+.++|-|.- |--|=||.++-..+
T Consensus 123 ~a~~V~-~HD~~~~~P~gc~VT~-~~dG~~~~~dCDf-IAGCDGFHGvSR~s 171 (393)
T TIGR02360 123 DADDVR-LHDLAGDRPEGCHVTF-ERDGEEHRIDCDF-IAGCDGFHGVSRAS 171 (393)
T ss_pred ECCCCC-CCCCCCCCCCCCEEEE-EECCCEEEEEEEE-EECCCCCCCCCCCC
T ss_conf 114321-1265678889525877-7879177764026-75278886865445
No 278
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=96.25 E-value=0.025 Score=33.79 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=30.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 1058898996899999999998898299998689
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
.--|+|+|+|-=|.|.|++|++.|.+|++++..+
T Consensus 12 ~kkIgIlGgGQLg~Mla~aA~~LG~~vivld~~~ 45 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYA 45 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 8889998988999999999998799899984899
No 279
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.24 E-value=0.0026 Score=40.28 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=39.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 23421577158537788853322760340212203356643047643222222321567755665
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM 432 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~ 432 (611)
-||.+|.+|.+. .+..+.+|++||.||+|+|.. |......++.-||.|++++...
T Consensus 784 ~GIeld~rG~I~-vD~~t~~TS~pGVFAaGD~v~---------GpstVV~AIadGR~AA~aIl~~ 838 (1012)
T TIGR03315 784 NGIPLDEYGWPV-VNQATGETNITNVFVIGDANR---------GPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCEECCCCCEE-ECCCCCCCCCCCEEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 484088998988-688878789999888006675---------7789999999999999999864
No 280
>KOG1276 consensus
Probab=96.24 E-value=0.0077 Score=37.15 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=32.2
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCE--EEEECCCCCCCC
Q ss_conf 105889899689999999999889829--999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKT--ACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V--~lieK~~~~~g~ 55 (611)
.-+|.|+|+|++||+||..++..+.+| +|.|+.+..+|-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCE
T ss_conf 66699988853688999999854899559998427866652
No 281
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.15 E-value=0.0036 Score=39.32 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=5.8
Q ss_pred HHHHHHHHHHCCCEEE
Q ss_conf 8999999873123031
Q gi|254781043|r 157 LHTLYGQALKNNAEFF 172 (611)
Q Consensus 157 ~~~L~~~~~~~gv~i~ 172 (611)
++...+-.+..||+.+
T Consensus 192 Mk~v~~~t~~~~i~t~ 207 (760)
T PRK12778 192 MKFVCLLTKKYEIPTI 207 (760)
T ss_pred HHHHHHHHCCCCCCEE
T ss_conf 9999987260589748
No 282
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.10 E-value=0.0074 Score=37.27 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=27.3
Q ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCC
Q ss_conf 588989968999999999988---98299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEK---GFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~---G~~V~lieK~~ 50 (611)
-|+|||+|.||+.+|.+++++ +.+|+||++.+
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 99999960999999999704178998399999988
No 283
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.04 E-value=0.0067 Score=37.55 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=33.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
Q ss_conf 0588989968999999999988982999986898852104
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV 57 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~ 57 (611)
-+|-|||+|+|||+||.-++.. .+|.|.|-....+||+.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCEEEECCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCCC
T ss_conf 6168972562014457753235-52478860662467531
No 284
>PTZ00318 NADH dehydrogenase; Provisional
Probab=95.90 E-value=0.0091 Score=36.66 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|||+|.||+.+|..+.....+|+||++.+
T Consensus 12 rVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~n 43 (514)
T PTZ00318 12 NVVVVGTGWAGCYFARHLNPKLANLHVLSTRN 43 (514)
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 58999976999999997386898289999999
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.79 E-value=0.019 Score=34.51 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=23.3
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCCEEEEECC
Q ss_conf 88989968999999999988--9829999868
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEK--GFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~--G~~V~lieK~ 49 (611)
++|||+|.||+.||..+.+. ..+|.++...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~ 32 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGRE 32 (415)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 98982559999999999850777885999523
No 286
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.78 E-value=0.0076 Score=37.17 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 78885332276034021220335664304764322222232156775566542026
Q gi|254781043|r 382 NSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS 437 (611)
Q Consensus 382 ~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~ 437 (611)
+.++.+|++||+||+|++. +| ...+.+++-.||.|+.++..|+....
T Consensus 397 ~~~~~~Ts~~gVFa~GD~v----~G-----p~~vv~AI~~Gr~AA~~Id~yL~G~~ 443 (560)
T PRK12771 397 DRNFRMTGRPGVFAGGDMV----PG-----ERTVTTAVGHGKKAARHIDAFLRGEH 443 (560)
T ss_pred CCCCCCCCCCCEEECCCCC----CC-----CHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7876657998867436546----68-----41899999999999999999966898
No 287
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.78 E-value=0.15 Score=28.80 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 234215771585377888533227603402122033566430476432222223215677556654202
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~ 436 (611)
+++..|.+|-++- ++.++|+|||+||||++-...+ | -..-+.--|-+|+.+|-+|+...
T Consensus 253 ~~VelDe~GyI~t--De~m~TnVpGVyAAGDV~~k~l----r----QvvTA~~dGaiAA~~aerYi~~~ 311 (555)
T TIGR03143 253 GVVELDKRGYIPT--NEDMETNVPGVYAAGDLRPKEL----R----QVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCCCCCCCCEEEE--CCCCCCCCCCEEECCCCCCCCC----C----EEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 7325888971973--9997059998898834528987----7----35470875799999999999999
No 288
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.74 E-value=0.011 Score=36.22 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=31.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 05889899689999999999889829999868988
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
-.|.|||||.|||.||..++.+|.+|++.++.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCC
T ss_conf 67999888951555889998689879982666777
No 289
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.0098 Score=36.47 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=29.5
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 058898996899999999998898299998689
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
--|.|||+|+||.-||+.++++|..|.|.|--+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEECCC
T ss_conf 725897565445199999987698379997045
No 290
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.72 E-value=0.0059 Score=37.89 Aligned_cols=52 Identities=15% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 87312303113156520001344301246898058708995067247415765654
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
..+.||+++.++.++++=.+ .+. +...+..+++.+.+.=..+|||||.-...
T Consensus 54 ~~~~~I~v~~~~~V~~ID~~--~k~--V~~~~~~~~~~~~~~YDkLiiATGs~p~~ 105 (427)
T TIGR03385 54 IEKRGIDVKTNHEVIKVNDE--RQT--VVVKNNKTNETYEESYDYLILSPGASPII 105 (427)
T ss_pred HHHCCCEEECCCEEEEEECC--CCE--EEEEECCCCCEEECCCCEEEECCCCCCCC
T ss_conf 98789499918979999899--999--99966798966445789999976998567
No 291
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.71 E-value=0.019 Score=34.57 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=30.5
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 058898996899999999998898299998689
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-.|+|||+|.+|+.||..|+..|++|.++++..
T Consensus 21 a~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~ 53 (150)
T pfam01262 21 AKVVVIGGGVVGLGAAATAKGLGAPVTILDVRP 53 (150)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 779998987899999999986799899972999
No 292
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.69 E-value=0.0069 Score=37.46 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=38.4
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~ 431 (611)
-||.+|.+|.+.-. ++.+|++||.||+|+|. . |....-.++--||.|++++..
T Consensus 798 ~GIeld~~G~I~vD--e~~~TS~pGVFAaGD~v-~--------GpSTVV~AIadGRkAA~aIl~ 850 (1032)
T PRK09853 798 MGIPLDKNGWPDVN--HNGETNLTNVFMIGDVQ-R--------GPSSIVAAIADARRATDAILS 850 (1032)
T ss_pred CCCEECCCCCEEEC--CCCCCCCCCEEECCCCC-C--------CHHHHHHHHHHHHHHHHHHHH
T ss_conf 68118899988779--89987899977730767-6--------778999999999999999985
No 293
>PRK13748 putative mercuric reductase; Provisional
Probab=95.55 E-value=0.18 Score=28.25 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~ 431 (611)
-||.+|..|.+. .++.++|++|+.||+|+|. ++. .|..- +..-|++|+.++..
T Consensus 375 ~GV~~d~~G~I~--Vd~~~rTs~p~IYA~GDv~-g~~----~Lah~----A~~eG~~aa~ni~g 427 (561)
T PRK13748 375 AGVTVNAQGAIV--IDQGMRTSVPHIYAAGDCT-DQP----QFVYV----AAAAGTRAAINMTG 427 (561)
T ss_pred CCCEECCCCCEE--CCCCCCCCCCCEEEEECCC-CCC----CCHHH----HHHHHHHHHHHHCC
T ss_conf 287146899872--4887430786299961016-787----55689----99999999998619
No 294
>KOG0399 consensus
Probab=95.48 E-value=0.19 Score=28.10 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEEECEEEECCCHHHHHH--------HHHHHHCCCCEEEEEC
Q ss_conf 33231058898996899999--------9999988982999986
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRA--------TLGMAEKGFKTACITK 48 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~A--------Ai~A~e~G~~V~lieK 48 (611)
.+|-.||+ --|..|+.. |-+|...|.+++|++.
T Consensus 659 ~iditf~~---~~Gv~Gl~~~ld~ic~~A~eAv~~G~qiLVLSD 699 (2142)
T KOG0399 659 EIDITFDK---SEGVKGLVKTLDRICEEADEAVRDGYQILVLSD 699 (2142)
T ss_pred EEEEEEEH---HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 65556345---422445799999999988899856655999834
No 295
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=95.45 E-value=0.026 Score=33.67 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8898996899999999998898299998689
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
|+|||+|.-||-.|..+++.|.+|.|++..+
T Consensus 2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~ 32 (82)
T pfam00070 2 VVVVGGGYIGLEFASALAKLGSKVTVVERRD 32 (82)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999988999999999986392789981257
No 296
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=95.44 E-value=0.19 Score=28.00 Aligned_cols=182 Identities=20% Similarity=0.194 Sum_probs=101.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC---------CCCEEEE------------------------
Q ss_conf 8898996899999999998898299998689885210411---------6534251------------------------
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA---------QGGIAAS------------------------ 66 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A---------~GGi~a~------------------------ 66 (611)
|.|-|+|+|||.||--+++.|-.-+++|...+.+|. ++| ..|+..-
T Consensus 2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~-vaaW~d~dGdW~etGlh~ffGayPn~~~l~~el~i~drlqWk~ 80 (454)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK-VAAWKDEDGDWYETGLHIFFGAYPNILQLLKELNIEDRLQWKE 80 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCC-EEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 577227455677887876358962686321003550-2332247886113104554314578999998615022222211
Q ss_pred ----CC--CCC--------CC--CHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHH--HHHHHHHHHCCCC
Q ss_conf ----37--899--------99--99999998998458877999999-------------999988--9999999986998
Q gi|254781043|r 67 ----LA--NMT--------PD--SWQWHLYDTIKGSDWLGDVDAIQ-------------YLAMEA--PQSVYELEHYGVP 115 (611)
Q Consensus 67 ----~~--~~~--------~D--s~~~~~~Dt~~~g~~l~d~~lv~-------------~~~~~a--~~~i~~Le~~Gv~ 115 (611)
+. +.+ || +|-..+.-+++..+.+.=++.++ .|++.. -...+||...|++
T Consensus 81 h~~if~~~~~PG~~s~f~~P~~P~P~n~~~~il~nn~ml~W~~k~~fa~Gl~~~~~~Gq~yve~~d~~~~~~Wl~~~~~~ 160 (454)
T TIGR02731 81 HSLIFNQPDKPGTLSRFDFPDIPAPVNGVAAILRNNDMLTWEEKIKFAIGLLPAIVRGQKYVEEQDKYTVSEWLKKQGVP 160 (454)
T ss_pred HEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 00134046888740010477877518999998722421223666666753468874220567765314489898743711
Q ss_pred CCCCCCCCE---------------------E----EECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 132799855---------------------1----001464114567876564079866654266789999998731230
Q gi|254781043|r 116 FSRNEAGKI---------------------Y----QRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAE 170 (611)
Q Consensus 116 f~r~~~G~~---------------------~----~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~ 170 (611)
=.-+++-.+ + ++.--|....+.+|.+..| +...+.+.+...|.+
T Consensus 161 ~rv~~~vf~a~~kal~f~~Pde~s~~~~l~alnrfl~e~~Gsk~afldG~P~er-----------lC~P~v~~~~~~GGe 229 (454)
T TIGR02731 161 ERVNDEVFIAMSKALNFINPDEVSATVVLTALNRFLQERYGSKIAFLDGAPPER-----------LCQPIVDYITSRGGE 229 (454)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-----------HHHHHHHHHHHCCCE
T ss_conf 344567888788774015702567889999999987430477167626888045-----------557899999724881
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEEC
Q ss_conf 3113156520001344301246898058708995067247415
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLAT 213 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILAT 213 (611)
+..+..+.++..++|+.|......+.....-..+.+.+-|.|.
T Consensus 230 ~~~~~~l~~i~l~~d~~v~~f~~~~~~g~~~~~~~~d~y~~a~ 272 (454)
T TIGR02731 230 VRLNARLKEIVLNEDGSVKAFALADGEGKDSFEVTADAYVSAL 272 (454)
T ss_pred EEECCCEEEEEECCCCCEEHEEEECCCCCCCCEEECCCEEEHH
T ss_conf 6641310013435776210002204456420011101001111
No 297
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.42 E-value=0.027 Score=33.54 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC
Q ss_conf 05889899689999999999889--8299998689
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKG--FKTACITKVF 50 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~ 50 (611)
.-|+|||||.+|+.+|..+..+- ++|+||++.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 56999898679999999764167887189991887
No 298
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.027 Score=33.55 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf 99999873123031131565200013443012468980587089950672474157656543
Q gi|254781043|r 159 TLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY 220 (611)
Q Consensus 159 ~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly 220 (611)
.+.+..+...+++...+.+.+. ++++..==+. ..+|....+.|+.||+|||.++.=|
T Consensus 91 ~~~~y~~~~~i~~~~~v~~~~~--~~~~~~w~V~---~~~~~~~~~~a~~vV~ATG~~~~P~ 147 (443)
T COG2072 91 YLEKYGLRFQIRFNTRVEVADW--DEDTKRWTVT---TSDGGTGELTADFVVVATGHLSEPY 147 (443)
T ss_pred HHHHHCCEEEEECCCCEEEEEE--ECCCCEEEEE---ECCCCCCEEECCEEEECCCCCCCCC
T ss_conf 9998356045021452568863--0588706999---6488752251267998305789897
No 299
>KOG1800 consensus
Probab=95.30 E-value=0.033 Score=32.97 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=38.1
Q ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHH
Q ss_conf 58898996899999999998--898299998689885210411653425137899999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW 77 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~ 77 (611)
-|-|||||.||+.+|-.+.. .+++|-+.||.|+.-|=..+ ...||+++.
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy----------GVAPDHpEv 72 (468)
T KOG1800 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY----------GVAPDHPEV 72 (468)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE----------CCCCCCCCH
T ss_conf 599988883688999999725899706754157766533663----------347898210
No 300
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.22 E-value=0.028 Score=33.44 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 00123421577158537788853322760340212203356643047643222222321567755
Q gi|254781043|r 365 YNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRA 429 (611)
Q Consensus 365 y~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~a 429 (611)
.+.-||.++.||-++ .+.++.+|++||.||.|++..+ +.....++--|+.|++.+
T Consensus 568 ~t~p~L~~~k~G~I~-vd~~t~~Ts~~gVfAGGD~vrG---------~aTVIlAmgdG~~AAkei 622 (944)
T PRK12779 568 DAEPGLKTNKWGTIE-VEAGSQRTSIKDVYSGGDAARG---------GSTAIRAAGDGQAAAKEI 622 (944)
T ss_pred CCCCCCCCCCCCEEE-ECCCCCCCCCCCEEECCCCCCC---------HHHHHHHHHHHHHHHHHH
T ss_conf 368773016785199-8855576677777633550245---------678988755459999998
No 301
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=95.21 E-value=0.0068 Score=37.50 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=21.3
Q ss_pred HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 8731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
..+++|+++.+..|+++=+++ ..|+ ..-++...| ...|||||-+..
T Consensus 65 y~~~~i~ly~ge~vi~id~~~-k~v~------t~a~r~~~Y--D~LilATGS~pf 110 (813)
T TIGR02374 65 YEKHGIKLYTGERVIQIDREE-KSVI------TDAGRTLSY--DKLILATGSYPF 110 (813)
T ss_pred CCCCCEEEEECCEEEEEECCC-CEEE------CCCCCCCCC--CEEEEECCCCCC
T ss_conf 122754898768889983576-4587------047763357--517873066573
No 302
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.19 E-value=0.055 Score=31.58 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=35.1
Q ss_pred EECEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHH
Q ss_conf 1058898996899999999998-89829999868988521041
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAE-KGFKTACITKVFPTRSHTVA 58 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e-~G~~V~lieK~~~~~g~s~~ 58 (611)
-+=|-|||||.||+.||-.+.+ .+++|-++||.|..-|=..+
T Consensus 39 PlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfGLVRy 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
T ss_conf 6579998888389999999963899779888268988741110
No 303
>PRK04965 nitric oxide reductase; Provisional
Probab=95.18 E-value=0.039 Score=32.56 Aligned_cols=47 Identities=26% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
+...+.+|+++.++.++.+=. +.+++ . .+|+ .|.-+..|||||.-..
T Consensus 66 ~~~~~~~I~l~~~~~V~~ID~--~~k~V--~----~~g~--~~~YDkLVLATGa~p~ 112 (378)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA--EAQVV--K----SQGN--QWQYDKLVLATGASAF 112 (378)
T ss_pred HHHHHCCEEEECCCEEEEECC--CCCEE--E----ECCC--EEECCEEEEECCCCCC
T ss_conf 998748979986989999846--46379--9----5891--9846879993588755
No 304
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=95.17 E-value=0.024 Score=33.89 Aligned_cols=168 Identities=23% Similarity=0.330 Sum_probs=81.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 889899689999999999889829999868988521041165342513-7899999999999899845887799999999
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL-ANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~-~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
|-|||||.||-+||=++++.|.+..|+|+.. +++--.+|.|...+ ++- +=|. |++ |... ..+
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~---~~aKPCGGAIPLCMv~EF--~lP~----d~i-------DRRV-~kM 65 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKL---DNAKPCGGAIPLCMVDEF--DLPR----DII-------DRRV-TKM 65 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECC---CCCCCCCCCCCCCCCCHH--CCCH----HHH-------HCCC-CEE
T ss_conf 8897489741689999985031046332056---788778886441201010--3786----675-------1211-022
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH-HHHHHHHCCCEEECCCEE
Q ss_conf 9988999999998699813279985510014641145678765640798666542667899-999987312303113156
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT-LYGQALKNNAEFFIEYFA 177 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~-L~~~~~~~gv~i~~~~~~ 177 (611)
=-=||..|. +.|.|+-.-. .+-|+ . =++++++ |.+++.+.|.++...+..
T Consensus 66 k~~SPSN~~------~d~gr~L~~~----~yIgM---------~----------RREVLDsflR~RA~~~GA~li~Glv~ 116 (401)
T TIGR02028 66 KMISPSNIA------VDIGRTLKEH----EYIGM---------V----------RREVLDSFLRERAADAGATLINGLVL 116 (401)
T ss_pred EEECCCCHH------HHHHCCCCCC----CCCCC---------H----------HHHHHHHHHHHHHHHCCCEEECCEEE
T ss_conf 421641013------3200027887----61251---------4----------57888899999998648814144457
Q ss_pred --------------EEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCH-HHHHHHHHCC
Q ss_conf --------------5200013443012468980587089950672474157656543342106401444-8878875136
Q gi|254781043|r 178 --------------LDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGD-GAGMVARAGL 242 (611)
Q Consensus 178 --------------~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGd-G~~mA~~aGa 242 (611)
++.+. .||+ .|+ +|.-.++--.+||=|-|-=.++-+. ...|| -+++|++-=.
T Consensus 117 ~l~~P~~p~~~PY~lHY~~-~Dg~-~G~------~g~~~~lEVD~VIGADGANSRvAk~-----idAGDY~~AIAfQERI 183 (401)
T TIGR02028 117 KLELPADPADDPYTLHYVE-EDGK-GGA------SGTKKTLEVDAVIGADGANSRVAKE-----IDAGDYDYAIAFQERI 183 (401)
T ss_pred EECCCCCCCCCCCEEEEEE-ECCC-CCC------CCCCEEEEEEEEECCCCCCCHHHCC-----CCCCCHHHHHHHHHCC
T ss_conf 6317788877871789870-0687-587------6454068887787078752023111-----3788523444433203
Q ss_pred CCCC
Q ss_conf 5333
Q gi|254781043|r 243 PLQD 246 (611)
Q Consensus 243 ~l~~ 246 (611)
+|=|
T Consensus 184 RlPd 187 (401)
T TIGR02028 184 RLPD 187 (401)
T ss_pred CCCC
T ss_conf 6870
No 305
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.10 E-value=0.025 Score=33.82 Aligned_cols=100 Identities=22% Similarity=0.362 Sum_probs=48.2
Q ss_pred CCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH---------HHHHHHHHHHCCCC---CCCCCC
Q ss_conf 210411653425137899999999999899845887799999999998---------89999999986998---132799
Q gi|254781043|r 54 SHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAME---------APQSVYELEHYGVP---FSRNEA 121 (611)
Q Consensus 54 g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~---------a~~~i~~Le~~Gv~---f~r~~~ 121 (611)
+.|.-..+| +..++ +.|+|+.|+--+-.|.-|-.-|..--++ +-.+=|-|.+-||. |+|-+.
T Consensus 104 aCTL~d~~G-AVTIG-----n~ErYi~D~AL~~GWrPD~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~ 177 (480)
T TIGR01318 104 ACTLNDEGG-AVTIG-----NLERYITDTALAMGWRPDLSHVKPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 177 (480)
T ss_pred CCHHCCCCC-CEEEC-----CEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 100203888-56872-----421000088984368898877300782789977886025799987517855999747703
Q ss_pred CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCEEECCCEE
Q ss_conf 8551001464114567876564079866654266789999998-7312303113156
Q gi|254781043|r 122 GKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAEFFIEYFA 177 (611)
Q Consensus 122 G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~i~~~~~~ 177 (611)
-||... |+- +++| =| ++++.. .+++ ..-||++..++++
T Consensus 178 -------iGGLLt-FGI-PsFK-----Ld---K~V~~~-Rr~if~~MGi~F~Ln~Ev 216 (480)
T TIGR01318 178 -------IGGLLT-FGI-PSFK-----LD---KAVLSR-RREIFTAMGIEFKLNTEV 216 (480)
T ss_pred -------CCCCCC-CCC-CCHH-----HH---HHHHHH-HHHHHHHCCCEEECCCEE
T ss_conf -------076013-688-8511-----02---789999-999997589278658165
No 306
>KOG1439 consensus
Probab=95.06 E-value=0.0092 Score=36.64 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.8
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 32310588989968999999999988982999986898852
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
|+.||||||+|.|+--|.-+..++-.|.+|+.+++.+..+|
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~ 41 (440)
T KOG1439 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGG 41 (440)
T ss_pred CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCCCCCC
T ss_conf 98751499973773641000002576958999707887776
No 307
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=94.93 E-value=0.045 Score=32.11 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 88989968999999999988982999986898852
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
|-|||+|+||+.+|+.+.++|.+|-+.|.-+..+|
T Consensus 2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GG 36 (474)
T TIGR02732 2 VAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGG 36 (474)
T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 57872567789999999738972788524332375
No 308
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.85 E-value=0.039 Score=32.52 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=12.1
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCE
Q ss_conf 23421577158537788853322760
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGL 393 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GL 393 (611)
|-+-||.-.+ .|.|++++.||=
T Consensus 278 GSVIVDlAad----qGGN~E~T~pge 299 (510)
T PRK09424 278 GSVIVDLAAA----NGGNCELTVPGE 299 (510)
T ss_pred CCEEEEECCC----CCCCCCCCCCCE
T ss_conf 9789995255----799710663994
No 309
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=94.76 E-value=0.055 Score=31.57 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=7.8
Q ss_pred EEEEECCCCHHHHHHHH
Q ss_conf 68861117989999985
Q gi|254781043|r 321 IHLYLNHLDPAVLQERL 337 (611)
Q Consensus 321 v~ld~~~~~~~~l~~~~ 337 (611)
|.|.++.-|+. |+..|
T Consensus 233 v~lEmSGaP~A-~~~gL 248 (341)
T TIGR00692 233 VVLEMSGAPKA-LEQGL 248 (341)
T ss_pred EEEECCCCCHH-HHHHH
T ss_conf 99864899179-99999
No 310
>KOG4405 consensus
Probab=94.75 E-value=0.033 Score=33.00 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=34.8
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 23105889899689999999999889829999868988521
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH 55 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~ 55 (611)
-.+|||+|||.|..-..-|.++++.|.+|+-++..+..+|+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred CHHCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 10343899817984899999860037705860686555776
No 311
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.67 E-value=0.066 Score=31.04 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf 12342157715853778885332276034021220335---664304764322-222232156775566
Q gi|254781043|r 367 MGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASV---HGANRLGSNSLI-DLVVFGRAAVIRASE 431 (611)
Q Consensus 367 ~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~---hGanrlggnsl~-~~~vfG~~Ag~~aa~ 431 (611)
.|||.||.+ ++|++|+.||+|+|+ ... +|.+. -..|. .+.-.|++|+.+++.
T Consensus 248 ~G~I~Vd~~----------~~Ts~p~IyA~GD~a-~~~~~~t~~~~--~~~l~~~A~~qgriaa~ni~g 303 (427)
T TIGR03385 248 TGAIWVNEK----------FQTSVPNIYAAGDVA-ESKNIVTKKPA--WIPLAWGANKMGRIVGENIAG 303 (427)
T ss_pred CCCEECCCC----------CCCCCCCEEEEECEE-ECCCCCCCCCC--EECCHHHHHHHHHHHHHHHCC
T ss_conf 886852765----------543689999982104-11455568842--341568999999999997459
No 312
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=94.41 E-value=0.023 Score=34.04 Aligned_cols=97 Identities=24% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCCCCCCCEEEEEECEEEE-CCCHHHHH-------HHHHHHH-CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCH
Q ss_conf 0005344133231058898-99689999-------9999998-8982999986898852104116534251378999999
Q gi|254781043|r 5 SNLKSSYTYVDHSYDVVVV-GAGGAGLR-------ATLGMAE-KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75 (611)
Q Consensus 5 ~~~~~~~~~~d~~~DVlVI-G~G~AGl~-------AAi~A~e-~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~ 75 (611)
..++.++++.+.+||++|| |+|...=- |=++.|+ ..++|+|| +.+.||+-+++==|.-.. -+|.+
T Consensus 110 ~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~~iLv--ADIDRGGVFAsi~GTl~L----L~~~~ 183 (502)
T TIGR00313 110 KAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADADVILV--ADIDRGGVFASIYGTLKL----LPEEE 183 (502)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE--EECCCCCCHHHHHHHHHH----CCCCC
T ss_conf 999999987520288899826887100053315722478986439767999--750777432433746661----88345
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 9999989984588779999999999889999999986-998
Q gi|254781043|r 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHY-GVP 115 (611)
Q Consensus 76 ~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~-Gv~ 115 (611)
...+.=++ -+.+..+.++.. +-|+|||++ |+|
T Consensus 184 r~liKG~v-INkfRG~~~vL~-------~GI~~lEelTGiP 216 (502)
T TIGR00313 184 RKLIKGIV-INKFRGNVDVLE-------SGIEKLEELTGIP 216 (502)
T ss_pred CCEECEEE-ECCCCCCHHHHH-------HHHHHHHHHCCCC
T ss_conf 75003068-835468724434-------4568998854842
No 313
>KOG2755 consensus
Probab=94.30 E-value=0.022 Score=34.22 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=30.1
Q ss_pred EEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCH
Q ss_conf 8898996899999999998--8982999986898852104
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTV 57 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~ 57 (611)
.||||||+||.+||-..+. ..++|+|++..++..|-+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn 41 (334)
T KOG2755 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN 41 (334)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf 5998576143258999975388873899964178887761
No 314
>PRK13984 putative oxidoreductase; Provisional
Probab=94.18 E-value=0.022 Score=34.12 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8853322760340212203356643047643222222321567755665420
Q gi|254781043|r 384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK 435 (611)
Q Consensus 384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~ 435 (611)
++.+|++||+||+|++. +|+ ++..++--||.|++++.+|+.+
T Consensus 562 ~~~~Ts~pgVFAgGD~v----~G~------sVV~AIa~GR~AA~~Id~yL~g 603 (604)
T PRK13984 562 EYRQTSVPWLFAGGDIV----HGP------DIIHGVADGYWAAKGIDQYLRK 603 (604)
T ss_pred CCCCCCCCCEEECCCCC----CCC------HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99877899988777868----762------8999999999999999999775
No 315
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.11 Score=29.63 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=31.6
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 310588989968999999999988982999986898852
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g 54 (611)
++|||+|+|.|+--+.-+..++-+|.+|+.++|.+..++
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 300189962668999998886226751799707876675
No 316
>KOG3855 consensus
Probab=93.94 E-value=0.14 Score=28.83 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=25.6
Q ss_pred EECEEEECCCHHHHHHHHHHHH----CCCCEEEEECCC
Q ss_conf 1058898996899999999998----898299998689
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAE----KGFKTACITKVF 50 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK~~ 50 (611)
.|||||+|||..|+.-|.+... +-.+|+|++-+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred CCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECCC
T ss_conf 07789988844778999986249850000146774246
No 317
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.93 E-value=0.12 Score=29.45 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCC
Q ss_conf 5889899689999999999889--829999868988
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPT 52 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~ 52 (611)
.|+|||+|.||++||.++++.+ .+|+|++|.+..
T Consensus 3 kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~ 38 (438)
T PRK13512 3 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 099989849999999999943919999999689988
No 318
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=93.91 E-value=0.089 Score=30.20 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=28.6
Q ss_pred CEEEECCC-----------HHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996-----------899999999998898299998689
Q gi|254781043|r 19 DVVVVGAG-----------GAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G-----------~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-||||||| -||--|..+++|.|..|+||--.+
T Consensus 8 kvLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNp 50 (1089)
T TIGR01369 8 KVLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNP 50 (1089)
T ss_pred EEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 8999666731131202302478999999876495799975884
No 319
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.84 E-value=0.19 Score=27.99 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=33.1
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf 323105889899689999999999889-8299998689885
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTR 53 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~ 53 (611)
|...+|++.||-|.+-|.-|+...+.+ .+++.+||-+-.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~ 42 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS 42 (436)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 87640268870483278999873502575257873478887
No 320
>KOG1336 consensus
Probab=93.20 E-value=0.029 Score=33.34 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 98731230311315652000134430124689805870899506724741576
Q gi|254781043|r 163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 163 ~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
--+..+|+++.++.++.+=++. ..+ + ..+|+. ++=...|||||.
T Consensus 136 ~Yke~gIe~~~~t~v~~~D~~~-K~l---~---~~~Ge~--~kys~LilATGs 179 (478)
T KOG1336 136 FYKEKGIELILGTSVVKADLAS-KTL---V---LGNGET--LKYSKLIIATGS 179 (478)
T ss_pred HHHHCCCEEEECCEEEEEECCC-CEE---E---ECCCCE--EECCEEEEEECC
T ss_conf 6765382379703058864146-579---9---679835--301069996157
No 321
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.19 Score=28.06 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=28.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|||+|.|.+|+.+|--+.++|++|.+.+..
T Consensus 9 ~vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~ 39 (501)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGCRLRVADTR 39 (501)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 3999833688999999999789849999899
No 322
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=92.63 E-value=0.044 Score=32.19 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=29.0
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 53322760340212203356643047643222222321567755665
Q gi|254781043|r 386 PERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM 432 (611)
Q Consensus 386 ~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~ 432 (611)
-...+||||+||=++ .-+||+||+|-- ....++.|+.+++-+.+.
T Consensus 237 t~~~~~NLY~AGMa~-aa~~G~~RMGPi-FGgM~LSG~~~AE~i~e~ 281 (283)
T TIGR00292 237 TREVVPNLYVAGMAV-AAVHGLPRMGPI-FGGMLLSGKKVAELILEK 281 (283)
T ss_pred CCCCCCCCCHHHHHH-HHHCCCCCCCHH-HHHHHHHHHHHHHHHHHH
T ss_conf 212167601110378-765588757545-535655568989999885
No 323
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.44 E-value=0.26 Score=27.15 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|+|.|.+|+.+|--+++.|++|++.+...
T Consensus 19 kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~ 50 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLSELGCDVVVADDNE 50 (476)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88999227889999999997899799998998
No 324
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.08 E-value=0.28 Score=26.98 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf 9987312303113156520001344301246898058708995067247415765654
Q gi|254781043|r 162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 (611)
Q Consensus 162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l 219 (611)
..+...+|+++...- .+ ++ + +.+-+. ...+...|.|+.+|||||.-.+.
T Consensus 84 ~~~~~~gv~~~~g~a--~~-~~-~-~~v~V~----~~~~~~~~~a~~iIIATGs~p~~ 132 (438)
T PRK07251 84 AMLAGTGVDIYDAEA--HF-VS-N-KVIEVT----AGDEKQELTAETIVINTGAVSNV 132 (438)
T ss_pred HHHHHCCCEEEEEEE--EE-CC-C-CEEEEE----CCCCEEEEEEEEEEECCCCCCCC
T ss_conf 999748948999799--98-16-8-489995----59972999976898726787866
No 325
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=92.05 E-value=0.31 Score=26.67 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=21.2
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 2342157715853778885332276034021220
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC 401 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~ 401 (611)
.|+..|.+|.+.- ++.++|++||+||||+|+.
T Consensus 243 ~gl~~~~~G~I~v--d~~~~Ts~~~VyA~GDva~ 274 (277)
T pfam07992 243 AGLELDERGYIVV--DEYLRTSVPGIYAAGDVAE 274 (277)
T ss_pred CCCCCCCCCCEEE--CCCCEECCCCEEEEEECCC
T ss_conf 7924889995867--9297409999999886889
No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.03 E-value=0.28 Score=26.91 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|+|.|.+|+.+|--+.++|++|.+.+...
T Consensus 16 ~v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~ 47 (481)
T PRK01438 16 RVVVAGLGVSGFPAADALHELGASVTVVADGD 47 (481)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999575889999999996799899997998
No 327
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.98 E-value=0.29 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 885332276034021220335664304764322222232156775566
Q gi|254781043|r 384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 (611)
Q Consensus 384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~ 431 (611)
+.++|++||.||+|+|. ++. -|...+ .-.|++|+.++..
T Consensus 298 ~~~~Ts~p~IyA~GDv~-g~~----~lah~A----~~qg~~aa~~i~g 336 (472)
T PRK06467 298 KQCRTNVPHIFAIGDIV-GQP----MLAHKG----VHEGHVAAEVIAG 336 (472)
T ss_pred CCCCCCCCCEEECCCCC-CCC----CCHHHH----HHHHHHHHHHHCC
T ss_conf 97535886358611246-887----766799----9999999998669
No 328
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.76 E-value=0.31 Score=26.64 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=30.3
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 3105889899689999999999889829999868
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
.+.-|||||||-.+.+=+-.+.+.|++|.||++.
T Consensus 23 ~klkvLVVGGG~VA~RKi~~Ll~agA~VtVVSP~ 56 (222)
T PRK05562 23 NKIKVLVIGGGKAAFIKGKTFLKKGCYVEILSKE 56 (222)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 6766999998799999999998789989998786
No 329
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=91.72 E-value=0.14 Score=28.99 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=35.0
Q ss_pred CCCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6200053441332310588989968999999999988982999986
Q gi|254781043|r 3 NSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 3 ~~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
||.+-|..-.+-+. .|||||+|.+|+=.|.++++...+|.+..+
T Consensus 171 HS~~Yk~~~~f~GK--rVlVVG~GnSg~DIA~els~~a~~V~ls~R 214 (532)
T pfam00743 171 HSRDYKHPEGFQGK--RVLVIGLGNSGGDIAVELSRTAAQVFLSTR 214 (532)
T ss_pred EHHHCCCHHHCCCC--EEEEECCCCCCCHHHHHHHHHCCEEEEEEE
T ss_conf 74427986885997--499978889841059999852786899970
No 330
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.64 E-value=0.37 Score=26.11 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=22.5
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88533227603402122033566430476432222223215677556
Q gi|254781043|r 384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS 430 (611)
Q Consensus 384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa 430 (611)
+.++|++|+.||+|+|+ ++.. |...+. -.|++|+.++.
T Consensus 289 ~~~~Ts~~~IyA~GDv~-g~~~----Lah~A~----~eg~~a~~ni~ 326 (452)
T TIGR03452 289 EYGRTSARGVWALGDVS-SPYQ----LKHVAN----AEARVVKHNLL 326 (452)
T ss_pred CCCCCCCCEEEEEECCC-CCCC----CHHHHH----HHHHHHHHHHC
T ss_conf 76786897399974068-8757----700899----99999999970
No 331
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.54 E-value=0.35 Score=26.33 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=28.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|||-|.+|+.+|--+.++|++|.+.++.+
T Consensus 11 ~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (450)
T PRK02472 11 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 42 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999778999999999998869899984886
No 332
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=91.52 E-value=0.36 Score=26.19 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 234215771585377888533227603402122033566430476432222223215677556
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS 430 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa 430 (611)
.||.+|..|.+.- ++.++|++|+.||+|+|+ ++. -|...+. -.|++|+.++.
T Consensus 274 ~gi~~~~~G~I~v--d~~~~Ts~~~IyA~GDv~-g~~----~lah~A~----~qg~ia~~~i~ 325 (453)
T PRK07846 274 AGVDVHEDGRVKV--DEYQRTSARGVFALGDVS-SPY----QLKHVAN----HEARVVKHNLL 325 (453)
T ss_pred CCCCCCCCCCEEE--CCCCCCCCCEEEEEEECC-CCC----CCHHHHH----HHHHHHHHHHH
T ss_conf 4774454685432--674464787299987468-876----7622899----99999999972
No 333
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.86 E-value=0.44 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 05889899689999999999889829999868
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
--|||||||-.+.+=+....+.|++|.|+++.
T Consensus 11 k~vLVVGGG~vA~rK~~~Ll~~gA~VtVvsp~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHITVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 86999889899999999998689969998699
No 334
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.84 E-value=0.51 Score=25.26 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf 123031131565200013443012468980587089950672474157656
Q gi|254781043|r 167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~ 217 (611)
.+|+++...- .+ ++. .+|. + ...+|+ ..+.|+.+|+|||.-.
T Consensus 90 ~~v~~i~G~a--~f-~~~-~~v~-V---~~~~g~-~~l~a~~ivIATGs~p 131 (441)
T PRK08010 90 PNIDVIDGQA--EF-INN-HSLR-V---HRPDGN-LEIHGEKIFINTGAQS 131 (441)
T ss_pred CCCEEEEEEE--EE-CCC-CCEE-E---ECCCCC-EEEEEEEEEEECCCCC
T ss_conf 6958999899--98-579-8237-7---648998-9998258999337765
No 335
>KOG3851 consensus
Probab=90.69 E-value=0.27 Score=27.08 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=27.0
Q ss_pred EEECEEEECCCHHHHHHHHHHHHC-CC-CEEEEECC
Q ss_conf 310588989968999999999988-98-29999868
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEK-GF-KTACITKV 49 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~-G~-~V~lieK~ 49 (611)
..|.|||||||.+|+..|-....+ |. +|.+||..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 034899986786305789999865689855775521
No 336
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.63 E-value=0.51 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|+|-|.+|+.+|--+.++|++|.+.+..+
T Consensus 11 ~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (457)
T PRK01390 11 TVALFGLGGSGLATARALKAGGAEVIAWDDNP 42 (457)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999436999999999997899799993992
No 337
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=90.59 E-value=0.33 Score=26.48 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=31.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 58898996899999999998898-29999868988521
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
-|||||.|+=|..++.-++..|. +|.+++...+.-||
T Consensus 23 ~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V~~SN 60 (210)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHVDLSN 60 (210)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEECHHH
T ss_conf 65999726145689999982888378998516770101
No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.56 E-value=0.62 Score=24.67 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCCCCE-EEE-EECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 0534413-323-105889899689999999999889829999868
Q gi|254781043|r 7 LKSSYTY-VDH-SYDVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 7 ~~~~~~~-~d~-~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
|-..||+ +|. .--|||||||--+.+=+-.+.+.|++|.|+++.
T Consensus 1 m~~~~Pifl~l~~k~vLVvGGG~VA~rK~~~Ll~~ga~VtVvsp~ 45 (157)
T PRK06719 1 MYNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 996430689759987999889899999999998787969999998
No 339
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.55 E-value=0.48 Score=25.38 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=28.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|+|.|.+|+.+|--+.++|++|.+.+..+
T Consensus 14 ~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~ 45 (487)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (487)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999156838999999997869799998982
No 340
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.40 E-value=0.47 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=27.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-|+|+|.|.+|+.+|--+.++|++|.+.+.
T Consensus 8 ~v~V~GlG~sG~s~~~~L~~~G~~v~~~D~ 37 (438)
T PRK03806 8 NVVIIGLGLTGLSCVDFFLARGVTPRVMDT 37 (438)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899994578889999999978996999989
No 341
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=90.35 E-value=0.49 Score=25.33 Aligned_cols=18 Identities=11% Similarity=0.619 Sum_probs=9.5
Q ss_pred EEEEC-CC-CEEEECCCCCC
Q ss_conf 89950-67-24741576565
Q gi|254781043|r 201 IHRFS-AK-LVVLATGGYGR 218 (611)
Q Consensus 201 ~~~i~-Ak-aVILATGG~~~ 218 (611)
+..++ -+ .+|+-.||+++
T Consensus 115 l~~l~~~~~~li~GAGGAa~ 134 (286)
T TIGR00507 115 LSKLKPNQRVLIIGAGGAAK 134 (286)
T ss_pred HHCCCCCCEEEEEECCHHHH
T ss_conf 40368997799994286789
No 342
>KOG3923 consensus
Probab=90.29 E-value=0.88 Score=23.70 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=30.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCC-------CCEEEEECCCCCCCCCHHCCC
Q ss_conf 05889899689999999999889-------829999868988521041165
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKG-------FKTACITKVFPTRSHTVAAQG 61 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G-------~~V~lieK~~~~~g~s~~A~G 61 (611)
-+|.|||+|.-||+.|+...+.+ ++|.+++--+.....|..+.|
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AG 54 (342)
T KOG3923 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAG 54 (342)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 608997477101568999998654126886227874577865555543464
No 343
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=90.13 E-value=0.18 Score=28.15 Aligned_cols=43 Identities=30% Similarity=0.418 Sum_probs=28.0
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 322760340212203356643047643222222321567755665
Q gi|254781043|r 388 RFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM 432 (611)
Q Consensus 388 t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~ 432 (611)
...||||+||=++| -+||++|+|-. ....+..|+.|++.+.+.
T Consensus 216 eV~pgL~vaGMa~~-av~G~pRMGPi-FGgMllSGkkaAe~i~e~ 258 (262)
T COG1635 216 EVYPGLYVAGMAVN-AVHGLPRMGPI-FGGMLLSGKKAAEEILEK 258 (262)
T ss_pred CCCCCEEEEHHHHH-HHCCCCCCCCH-HHHHHHCHHHHHHHHHHH
T ss_conf 40587376114567-64188656741-355664409999999998
No 344
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=0.28 Score=26.97 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=17.2
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf 1234215771585377888533227603402122
Q gi|254781043|r 367 MGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG 400 (611)
Q Consensus 367 ~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a 400 (611)
+|-|.||.+| .|+|||+||||+|-
T Consensus 466 rGEIivD~~g----------~T~vpGvFAAGD~T 489 (520)
T COG3634 466 RGEIIVDARG----------ETNVPGVFAAGDCT 489 (520)
T ss_pred CCCEEEECCC----------CCCCCCEEECCCCC
T ss_conf 7647885578----------76787235337535
No 345
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.80 E-value=0.75 Score=24.13 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|||+|+=|+.-|..+++.|.+|.++.+..
T Consensus 7 kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~~ 38 (313)
T PRK06249 7 RIAIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 89999914999999999996699569996755
No 346
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.78 E-value=0.58 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=28.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|||-|.+|+.+|--+.++|++|.+.++.+
T Consensus 7 ~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999989999999999997899199997999
No 347
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=89.68 E-value=0.19 Score=28.00 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 32276034021220335664304764322222232156775566542
Q gi|254781043|r 388 RFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434 (611)
Q Consensus 388 t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~ 434 (611)
-..||||++|=++ ..+||.+|+|-. ....+..|+.|++-+.+..+
T Consensus 211 eV~PGL~v~GMa~-~~v~G~pRMGPi-FGgMllSG~kaAe~i~~~L~ 255 (257)
T PRK04176 211 EVYPGLYVAGMAA-NAVHGLPRMGPI-FGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CCCCCEEEECHHH-HHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 5347779851104-642398766715-77788744999999999973
No 348
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.33 E-value=0.54 Score=25.07 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 10588989968999999999988982999986
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
.=.+||+|.|.+|+.+|--+.++|++|.+.+.
T Consensus 7 ~~~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~ 38 (448)
T PRK03803 7 DGLRIVVGLGKSGMSLVRFLARQGYQFAVTDT 38 (448)
T ss_pred CCCEEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99589999899999999999978895999918
No 349
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.02 E-value=0.62 Score=24.69 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=27.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-|+|+|.|.+|..+|--+.++|.+|++.++
T Consensus 5 kvlV~GlG~SG~s~a~~L~~~g~~v~~~D~ 34 (418)
T PRK00683 5 RVVVLGLGVTGKSVARFLAQKGVYVIGVDN 34 (418)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEECC
T ss_conf 699980888799999999978298999829
No 350
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.00 E-value=0.4 Score=25.92 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=11.9
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 887887513653333222
Q gi|254781043|r 233 GAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 233 G~~mA~~aGa~l~~mEf~ 250 (611)
.-.||.--||.++-+++.
T Consensus 183 aAkiA~glgA~Vtild~n 200 (371)
T COG0686 183 AAKIAIGLGADVTILDLN 200 (371)
T ss_pred HHHHHHCCCCEEEEEECC
T ss_conf 999972368706999527
No 351
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=88.82 E-value=0.76 Score=24.09 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
.|||||||-.|++=|-.....|++|+++.+.
T Consensus 14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 14 KVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 7999899899999999997469979998787
No 352
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.76 E-value=0.87 Score=23.72 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=28.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.=|..-|..++..|.+|+|++..
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~ 35 (288)
T PRK08293 5 KVTVAGAGVLGSQIAFQTAFKGFDVTIYDIS 35 (288)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999897889999999999579928999898
No 353
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=88.71 E-value=0.79 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=15.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 640798666542667899999987312303113
Q gi|254781043|r 142 VQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 142 ~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
.+.+....+.+...+ ..+++++.+.+.++.-=
T Consensus 104 tkiI~S~H~~~~~~l-~~~~~~~~~~~aDivKi 135 (477)
T PRK09310 104 IKIILSYHTSEHEDI-PQLYNEMLASQADYYKI 135 (477)
T ss_pred CEEEEEECCCCCHHH-HHHHHHHHHHCCCEEEE
T ss_conf 779998249983039-99999998607998999
No 354
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=88.53 E-value=0.91 Score=23.59 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=29.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|-|||+|==|-|-|++|.+.|.+|.+++..+
T Consensus 9 tIGIlGgGQLgrMla~aA~~lG~~v~vldp~~ 40 (377)
T PRK06019 9 TIGIIGGGQLGRMLALAAAPLGYKVIVLDPDA 40 (377)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99998786899999999997899899984898
No 355
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=88.51 E-value=0.87 Score=23.71 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
.|-|||.|-=||..|+..++.|.+|+.+++..
T Consensus 2 kI~ViGlGyVGl~~a~~la~~G~~V~g~D~d~ 33 (185)
T pfam03721 2 RIAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ 33 (185)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 79998978748999999994899399997998
No 356
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.26 E-value=0.89 Score=23.67 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=28.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|+|+|-|.+|+.+|--+.++|++|.+.++..
T Consensus 16 kv~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 69999787889999999997889799998988
No 357
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.18 E-value=1 Score=23.21 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=28.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-|+|||+|.=|..-|..+++.|.+|.++.+
T Consensus 4 kI~IiGaGAvG~~~a~~L~~aG~~V~lv~r 33 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 799989679999999999858998799956
No 358
>KOG1346 consensus
Probab=88.17 E-value=0.16 Score=28.57 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0123421577158537788853322760340212203--35664304764322222232156775566542
Q gi|254781043|r 366 NMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCA--SVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434 (611)
Q Consensus 366 ~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~--g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~ 434 (611)
..||+++|..-+ .=.++|+||++||- ++-|+-|..+ .-.++|.||.||++....++
T Consensus 464 ~lGGfrvnaeL~-----------ar~NvwvAGdaacF~D~~LGrRRVeh--hdhavvSGRLAGENMtgAak 521 (659)
T KOG1346 464 KLGGFRVNAELK-----------ARENVWVAGDAACFEDGVLGRRRVEH--HDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred CCCCEEEEHEEE-----------CCCCEEEECCHHHHHCCCCCCEECCC--CCCCEEECEECCCCCCCCCC
T ss_conf 037677412000-----------15433650424454053111000032--44324502002654444568
No 359
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=88.08 E-value=1 Score=23.25 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=27.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 889899689999999999889829999868
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
|-|||+|.-|..=|...+..|.+|.+++..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~ 31 (180)
T pfam02737 2 VAVIGAGTMGAGIAQVFARAGLEVVLVDIS 31 (180)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 899997889999999999679939999799
No 360
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=87.92 E-value=0.98 Score=23.38 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8898996899999999998898299998689
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
|+|||+|.=|+.-|..+++.|.+|.++.+..
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~ 31 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGR 31 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999668999999999997799289997563
No 361
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.83 E-value=1.2 Score=22.84 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=31.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
--|||||.|.-|+.+|.-++..|. ++.|++...+..|+
T Consensus 43 a~VlvvG~GGLG~~~~~yLaaaGvG~i~ivD~D~v~~sN 81 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTIGIVEFDVVDESN 81 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 978998787578999999998289759998789967455
No 362
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.81 E-value=1.1 Score=23.08 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=31.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
--|||||.|.=|..+|.-++..|. ++.+++...+.-|+
T Consensus 25 s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD~D~Ve~SN 63 (337)
T PRK12475 25 KHVLIIGAGALGAANAEALVRAGIGKLTIADRDYVEWSN 63 (337)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCC
T ss_conf 969999777778999999998289869998499831446
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.79 E-value=1 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=28.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|+|||+|.=|+.-|..+++.|.+|.++...
T Consensus 2 kI~IiGaGaiG~~~a~~L~~ag~~V~li~r~ 32 (307)
T PRK06522 2 KIAILGAGAIGGLFGARLAQAGHDVTLVARG 32 (307)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999991499999999998489988999788
No 364
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=87.60 E-value=0.32 Score=26.59 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCC--EE----EEECCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf 678999999873123031131565200013443012468980587--08----995067247415765654334210640
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG--EI----HRFSAKLVVLATGGYGRAYFSATSAHT 228 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G--~~----~~i~AkaVILATGG~~~ly~~~t~~~~ 228 (611)
.|...+.++..+.|++++....+.++-+.-+|. -+.....++ ++ ....+..||-|||= .+++.
T Consensus 223 ~i~~~~~~~~~~~G~~vh~~~~~~kveKt~~~d---~~~i~~~~~PGrlPvm~~~~~~d~liwa~GR-----~Pn~~--- 291 (475)
T TIGR01421 223 MISEKVVEEYEKEGLEVHKLSKPVKVEKTVEGD---KLVIHFEDGPGRLPVMKEIDDVDELIWAIGR-----KPNTK--- 291 (475)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC---EEEEEEECCCCCCCCCCCCCCHHHHHHHCCC-----CCCCC---
T ss_conf 664266899996796021566047998415786---4799996688865310234305678740588-----56735---
Q ss_pred ECCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 14448878875136533332223
Q gi|254781043|r 229 CTGDGAGMVARAGLPLQDMEFVQ 251 (611)
Q Consensus 229 ~tGdG~~mA~~aGa~l~~mEf~q 251 (611)
++.+ -++|..|-+-.|||
T Consensus 292 ----~L~l-e~~gv~ld~kg~i~ 309 (475)
T TIGR01421 292 ----GLGL-EKVGVKLDEKGYII 309 (475)
T ss_pred ----CCCC-CCCCEEECCCCCEE
T ss_conf ----5442-13212566887388
No 365
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.53 E-value=1.1 Score=22.94 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=27.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.-|..=|...+..|.+|.|.+..
T Consensus 4 ~VaViGaG~mG~giA~~~a~~G~~V~l~D~~ 34 (308)
T PRK06129 4 SIAIVGAGLIGRAWAIVFARAGHRVRLWDAD 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7999777899999999998589938999898
No 366
>PRK07660 consensus
Probab=87.32 E-value=1.2 Score=22.81 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=28.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|.|||+|.=|..-|...+.+|.+|.|.+..
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~ 35 (283)
T PRK07660 5 KIVVIGAGQMGSGIAQVCAMAGYDVKVQDLK 35 (283)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999896989999999999669818999798
No 367
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.32 E-value=1.4 Score=22.33 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=31.8
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
--|||||.|.=|+.+|.-++..|. ++.+++...+.-|+
T Consensus 42 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~Ve~sN 80 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSN 80 (370)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 978998887578999999998289748987389826021
No 368
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.30 E-value=1.6 Score=21.99 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=31.8
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
.-|+|||.|.-|..+|.-++..|. ++.|++-..+.-|+
T Consensus 33 s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~ve~sN 71 (245)
T PRK05690 33 ARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTVSLSN 71 (245)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 978998777778999999998599659999688678886
No 369
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.00 E-value=1.3 Score=22.60 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=28.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.-|..-|...+..|.+|.|++..
T Consensus 5 ~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999897889999999999579938999799
No 370
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=87.00 E-value=1 Score=23.22 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=27.1
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 058898996899999999998898-29999868
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKV 49 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~ 49 (611)
-.|||||+|.|+-.++.++.+.|. ++.|+.+.
T Consensus 20 k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~ 52 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999998675899999999997199822886089
No 371
>PRK07411 hypothetical protein; Validated
Probab=86.92 E-value=1.5 Score=22.13 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=31.5
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
--|||||.|.=|+.+|.-++..|. +..|++...+..|+
T Consensus 39 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~ve~sN 77 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDIVDSSN 77 (390)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 978998887237999999998389759997489946234
No 372
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.90 E-value=1.3 Score=22.55 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.-|..-|...+..|.+|+|++..
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~ 35 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999887688999999999589988999899
No 373
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.89 E-value=1.7 Score=21.88 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCC
Q ss_conf 8898996899999999998898-2999986898852
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRS 54 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g 54 (611)
|+|||.|.=|+.+|.-++..|. +..|++...+.-|
T Consensus 2 V~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~Ve~S 37 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPS 37 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 899876788999999999818973999989946664
No 374
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.85 E-value=1.3 Score=22.55 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=28.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|.|||+|.=|..-|..++..|.+|.|++..
T Consensus 4 kV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~ 34 (289)
T PRK09260 4 KIVVVGAGVMGRGIAYVFASSGFQTTLVDIS 34 (289)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 6999796887899999999689988999799
No 375
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.85 E-value=1.4 Score=22.44 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
Q ss_conf 5889899689999999999889-8299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG-FKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~ 50 (611)
+|||||+|.=|..+|..+++.+ .+|.+.++..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 289989866679999999857896299984888
No 376
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.84 E-value=1.3 Score=22.52 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=31.9
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
..-|+|||.|.=|+.+|.-++..|. +..|++...+.-|+
T Consensus 27 ~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SN 66 (209)
T PRK08644 27 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSN 66 (209)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCEECCCC
T ss_conf 2968998887889999999999389818998899901541
No 377
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.83 E-value=1.3 Score=22.58 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=31.9
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
--|||||.|.=|..+|.-++..|. ++.|++...+..|+
T Consensus 25 a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD~D~Ve~SN 63 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSN 63 (339)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCC
T ss_conf 978998777777999999998489829998099924667
No 378
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=86.78 E-value=0.44 Score=25.67 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 2667899999987312303113156520001344301246898058708995067247415765
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
|.-+..+|.+..++.|+.++...+|++--.+ +++|.+++. +++.-..++|+.+|||||||
T Consensus 261 G~RL~~aL~~~~~~~Gg~~~~g~~V~~~~~~-~~~v~~v~t---~~~~~~~~~A~~~VLATGsF 320 (425)
T PRK05329 261 GIRLQNALRRRFERLGGVLMPGDEVLRATCE-DGRVTGIWT---RNHADIPLRARHFVLATGSF 320 (425)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEE-CCEEEEEEE---CCCCCEEEECCEEEEECCCC
T ss_conf 7999999999999869789669988878986-998999990---27884276137699903776
No 379
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.77 E-value=1.3 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=28.2
Q ss_pred CEEEECCC-----------HHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996-----------899999999998898299998689
Q gi|254781043|r 19 DVVVVGAG-----------GAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G-----------~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-||||||| .+|.-|+-+++|.|.+|+||.-.|
T Consensus 9 kvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NP 51 (1068)
T PRK12815 9 KILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNP 51 (1068)
T ss_pred EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 8999898815312344656569999999998699899988983
No 380
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.68 E-value=1.5 Score=22.21 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=14.1
Q ss_pred CCEEEEECCCCEEEECCCCC
Q ss_conf 87089950672474157656
Q gi|254781043|r 198 TGEIHRFSAKLVVLATGGYG 217 (611)
Q Consensus 198 ~G~~~~i~AkaVILATGG~~ 217 (611)
+|+.....|+.+|+-.||.|
T Consensus 131 ~GQ~kL~~a~VlivG~GGLG 150 (379)
T PRK08762 131 EGQRRLARARVLLIGAGGLG 150 (379)
T ss_pred HHHHHHHHCCEEEECCCHHH
T ss_conf 99999973978998887557
No 381
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=86.57 E-value=0.99 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=13.0
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCCEEEEE
Q ss_conf 88989968999999999988---98299998
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEK---GFKTACIT 47 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~---G~~V~lie 47 (611)
|.|+|+-++=-..++...++ ..+|..+.
T Consensus 4 i~IlGsTGSIG~~tL~Vi~~~~~~f~v~~ls 34 (379)
T PRK05447 4 ITILGSTGSIGTQTLDVIRRHPDRFRVVALS 34 (379)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9998569588899999999586875899999
No 382
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.41 E-value=1.5 Score=22.26 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=28.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.=|..-|..++..|.+|.|.+..
T Consensus 6 ~VaViGAG~MG~giA~~~a~~G~~V~l~D~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8999896699999999999679968999798
No 383
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.29 E-value=1.4 Score=22.29 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=28.4
Q ss_pred CEEEECCC-----------HHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996-----------899999999998898299998689
Q gi|254781043|r 19 DVVVVGAG-----------GAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G-----------~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-||||||| .+|.-|+.+++|.|.+|+||.-.|
T Consensus 9 kvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~Np 51 (1063)
T PRK05294 9 KILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNP 51 (1063)
T ss_pred EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 8999898825103723326569999999998699899987985
No 384
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.29 E-value=1.6 Score=22.06 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.=|..-|..++.+|.+|+|++..
T Consensus 7 ~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~ 37 (310)
T PRK06130 7 NLAIIGAGAMGSGIAALFASKGLDVVLIDPM 37 (310)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8989787799999999998589988999799
No 385
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=86.18 E-value=1.2 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88989968999999999988982999986898
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
|+|+|.|--|..-|-.+.++| +|+++++.+-
T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~ 31 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPE 31 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECCHH
T ss_conf 999878889999999998089-9999999879
No 386
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.98 E-value=2 Score=21.32 Aligned_cols=39 Identities=33% Similarity=0.375 Sum_probs=32.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
+.-|+|||.|.=|..+|..++..|. ++.|++...+..|+
T Consensus 21 ~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sN 60 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSN 60 (228)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 4978998877889999999998399758999787455676
No 387
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.71 E-value=1.5 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=27.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8898996899999999998898299998689
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-+|+|-|.+|+.+|--+.++|.+|.+.+...
T Consensus 3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~ 33 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSERND 33 (459)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999548999999999997899599998989
No 388
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.68 E-value=1.6 Score=22.06 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
.++|||.|--|..-|-.+.+.|-+|+++++.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 89998985788999999987899089997688
No 389
>PRK09117 consensus
Probab=85.66 E-value=1.7 Score=21.83 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.=|..-|...+..|.+|.|.+..
T Consensus 4 ~VaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 34 (282)
T PRK09117 4 TVGIIGAGTMGNGIAQACAVAGLDVVMVDIS 34 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7999897799999999999679968999898
No 390
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.64 E-value=1.6 Score=22.02 Aligned_cols=39 Identities=33% Similarity=0.361 Sum_probs=33.1
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
+.-|+|||.|.=|..+|..++..|. +..|++...+.-|+
T Consensus 11 ~s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~v~~SN 50 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSN 50 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCC
T ss_conf 4978998886368999999998099759997199904544
No 391
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=85.45 E-value=0.83 Score=23.86 Aligned_cols=171 Identities=22% Similarity=0.279 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCHHCCCC-EEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99689999999999889829999--8689885210411653-42513789999999999989984588779999999999
Q gi|254781043|r 24 GAGGAGLRATLGMAEKGFKTACI--TKVFPTRSHTVAAQGG-IAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAM 100 (611)
Q Consensus 24 G~G~AGl~AAi~A~e~G~~V~li--eK~~~~~g~s~~A~GG-i~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~ 100 (611)
=||..|.--||.|+.+|++.+++ ||++-..=+-.-|-|+ |--.-+....|+|+.|+- . .+.|.+
T Consensus 72 TSGNTGiGLAL~Aa~kGYk~Iiv~PeKmS~eKv~VL~AlGAEivrtPT~a~~d~PeSh~g--------V-----a~rL~~ 138 (527)
T TIGR01137 72 TSGNTGIGLALVAAIKGYKCIIVLPEKMSEEKVDVLKALGAEIVRTPTAAAFDSPESHIG--------V-----AKRLVR 138 (527)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCH--------H-----HHHHCC
T ss_conf 888446899999952686399986875461478999981980778788878884865204--------8-----885222
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC--EEE
Q ss_conf 889999999986998132799855100146411456787656407986665426678999999873123031131--565
Q gi|254781043|r 101 EAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY--FAL 178 (611)
Q Consensus 101 ~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~--~~~ 178 (611)
+.|.+..=|+++. | ..-|-.|| +.||.+|.+ |+ .|..++.+. .|-
T Consensus 139 EiPga~KIlDQY~-----N--------------------~~NP~aHY--~~Tg~Ei~~----q~--EGlnlfdk~~~~VA 185 (527)
T TIGR01137 139 EIPGAHKILDQYA-----N--------------------PSNPLAHY--DGTGPEILE----QC--EGLNLFDKLDMFVA 185 (527)
T ss_pred CCCCCEECCCCCC-----C--------------------CCCCCCCC--CCCHHHHHH----HH--CCCCHHCCCCEEEE
T ss_conf 7888433520047-----8--------------------87861013--410589998----60--57301212117885
Q ss_pred EEEECCCCCCEEE--EEEEECCCEEEEECCC--CEEEECC--------------CCCCCCCCCCCC--------------
Q ss_conf 2000134430124--6898058708995067--2474157--------------656543342106--------------
Q gi|254781043|r 179 DLIINSEGCCVGV--VAWQLETGEIHRFSAK--LVVLATG--------------GYGRAYFSATSA-------------- 226 (611)
Q Consensus 179 ~Li~d~dG~V~Ga--v~~~~~~G~~~~i~Ak--aVILATG--------------G~~~ly~~~t~~-------------- 226 (611)
..=+ -|++.|+ ...+.+.+.+..|-|. .=|||-| |.|--|.++.+-
T Consensus 186 g~GT--GGTItGi~ryLK~~~~~~~~ivGaDP~GSila~pE~LN~t~~t~Y~VEGiGyDF~P~vlDR~v~D~w~k~~D~~ 263 (527)
T TIGR01137 186 GVGT--GGTITGIARYLKDESNPKVRIVGADPEGSILAQPEELNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKE 263 (527)
T ss_pred CCCC--CCHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 0578--83155455654321389338998769853321764655578983148762147768523765254468808816
Q ss_pred ----------------CEECCHHHHHHHHHCC
Q ss_conf ----------------4014448878875136
Q gi|254781043|r 227 ----------------HTCTGDGAGMVARAGL 242 (611)
Q Consensus 227 ----------------~~~tGdG~~mA~~aGa 242 (611)
.++.|.++..|+++-.
T Consensus 264 SF~maRrLi~eEGlLvGGS~GsAvvaal~~A~ 295 (527)
T TIGR01137 264 SFKMARRLIKEEGLLVGGSSGSAVVAALKVAE 295 (527)
T ss_pred HHHHHHHHHHHCCEEEECCHHHHHHHHHHHHH
T ss_conf 89999999874472640430358999999987
No 392
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.45 E-value=1.9 Score=21.52 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|-|||.|-=||..|+..++.|.+|+.++...
T Consensus 5 kI~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 79998868778999999996889489998999
No 393
>PRK08223 hypothetical protein; Validated
Probab=85.34 E-value=2.1 Score=21.28 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=31.4
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
+.-|+|||.|.-|..+|..++..|. +..|++-..+.-||
T Consensus 27 ~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~velSN 66 (287)
T PRK08223 27 NSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVFELVN 66 (287)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 5968999367557999999998289759997499846344
No 394
>PRK12862 malic enzyme; Reviewed
Probab=85.13 E-value=1.1 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHH--------HCCCCEEEEECCC
Q ss_conf 99689999999999--------8898299998689
Q gi|254781043|r 24 GAGGAGLRATLGMA--------EKGFKTACITKVF 50 (611)
Q Consensus 24 G~G~AGl~AAi~A~--------e~G~~V~lieK~~ 50 (611)
--|.|-.+-+|+.- -+|--|.||+-+.
T Consensus 45 tpgva~~c~~i~~~~~~~~~yt~k~n~vavvs~gt 79 (761)
T PRK12862 45 SPGVAAPCLEIVADPANAARYTARGNLVAVVSNGT 79 (761)
T ss_pred CCCCHHHHHHHHHCHHHHHHHHCCCCEEEEEECCC
T ss_conf 77428999999869798987631474699996896
No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.98 E-value=1.8 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 588989968999999999988982999986898
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
.|+|+|+|-=|..-|-.++++|.+|+||++.+-
T Consensus 2 ~IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~ 34 (455)
T PRK09496 2 KIIILGAGQVGGTLAERLVGENNDVTVIDTDEE 34 (455)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 799999888999999999868997999989999
No 396
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.87 E-value=1.5 Score=22.18 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=4.7
Q ss_pred CEEEECCCCC
Q ss_conf 2474157656
Q gi|254781043|r 208 LVVLATGGYG 217 (611)
Q Consensus 208 aVILATGG~~ 217 (611)
.+||-+||.+
T Consensus 125 vlIlGaGGaa 134 (275)
T PRK00258 125 ILLLGAGGAA 134 (275)
T ss_pred EEEECCCCHH
T ss_conf 9998887107
No 397
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.86 E-value=1.9 Score=21.51 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.=|..-|...+..|.+|.|++..
T Consensus 4 kV~ViGaG~mG~~IA~~~a~~G~~V~l~D~~ 34 (284)
T PRK07819 4 RVGVVGAGQMGSGIAEVCARAGVDVLVFETT 34 (284)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7999897789999999999579908999798
No 398
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.83 E-value=1.8 Score=21.72 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|-|||.|-=||..|+..+++|.+|+.++..+
T Consensus 2 kI~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 79998978779999999994899489998999
No 399
>PRK07232 malic enzyme; Reviewed
Probab=84.79 E-value=1.3 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHH--------HCCCCEEEEECCC
Q ss_conf 9689999999999--------8898299998689
Q gi|254781043|r 25 AGGAGLRATLGMA--------EKGFKTACITKVF 50 (611)
Q Consensus 25 ~G~AGl~AAi~A~--------e~G~~V~lieK~~ 50 (611)
-|.|-.+-+|+.- -+|--|.||+-+.
T Consensus 40 pgva~~c~~i~~~p~~~~~yt~~~n~vavvs~gt 73 (753)
T PRK07232 40 PGVAAPCLEIAKDPADAYKYTARGNLVAVISNGT 73 (753)
T ss_pred CCCHHHHHHHHHCHHHHHHHHCCCCEEEEEECCC
T ss_conf 8428999999869798987621475699997896
No 400
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.74 E-value=1.9 Score=21.44 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=28.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|+|+|+|.=|+..|..+++.|.+|.++...
T Consensus 2 kI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~ 32 (306)
T PRK12921 2 KIAVVGAGAVGGTFGARLLEAGRDVTFLGRS 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8999992499999999998369988999700
No 401
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.74 E-value=2.6 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEECCCHHH--HHHHHHHHHCCCCEEEEEC
Q ss_conf 8898996899--9999999988982999986
Q gi|254781043|r 20 VVVVGAGGAG--LRATLGMAEKGFKTACITK 48 (611)
Q Consensus 20 VlVIG~G~AG--l~AAi~A~e~G~~V~lieK 48 (611)
|++|=||..| ...|...+++|++|++...
T Consensus 9 valVTGas~GIG~aia~~la~~Ga~V~i~~~ 39 (254)
T PRK06463 9 VALITGGSRGIGRAIAEKFLKEGAKVAILYN 39 (254)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8999484778999999999988999999649
No 402
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=84.70 E-value=2.1 Score=21.27 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCCCCCCCEE
Q ss_conf 7999997643678654406
Q gi|254781043|r 339 GISESARIFAGVDVTRDPI 357 (611)
Q Consensus 339 ~~~~~~~~~~g~D~~~~~i 357 (611)
...+.++.|.|++|..+.|
T Consensus 255 Qaa~aF~lwtg~~p~~~~~ 273 (283)
T COG0169 255 QAAEAFELWTGVEPPVDVM 273 (283)
T ss_pred HHHHHHHHHHCCCCCHHHH
T ss_conf 9999999984899978999
No 403
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=84.48 E-value=2.6 Score=20.62 Aligned_cols=37 Identities=35% Similarity=0.356 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 58898996899999999998898-29999868988521
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
-|+|||.|.-|...|..++..|. ++.|++...+..++
T Consensus 3 kVlivG~GglG~~~~~~La~~Gvg~i~lvD~D~ve~sN 40 (134)
T pfam00899 3 RVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSN 40 (134)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 89998988899999999999389749999895676322
No 404
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.16 E-value=1.9 Score=21.56 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=28.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-|.|||+|+=|..-|-.+++.|.+|.++..
T Consensus 4 kI~IiGaGAiG~~~a~~L~~ag~dV~lv~r 33 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILR 33 (305)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 899988239999999999848997399994
No 405
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=84.12 E-value=1.2 Score=22.92 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=32.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 058898996899999999998898299998689885
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR 53 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~ 53 (611)
=.|+|+|=|-.|--.|.+++..|++|+|.|..|+..
T Consensus 24 k~vvV~GYG~~GkGvA~~~rg~Ga~V~V~EvDPi~a 59 (162)
T pfam00670 24 KVAVVCGYGDVGKGCAASLKGQGARVIVTEIDPICA 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 789996787667779998622999899994793069
No 406
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.25 E-value=1.7 Score=21.83 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=30.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 5889899689999999999889829999868988
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
-|+|+|-|..|+.||-.+.+.|++|.+.+..+-.
T Consensus 9 kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 7999926651099999999779869998389876
No 407
>PRK06841 short chain dehydrogenase; Provisional
Probab=83.16 E-value=3.1 Score=20.15 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=20.7
Q ss_pred EEEECCCHH--HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 889899689--9999999998898299998689
Q gi|254781043|r 20 VVVVGAGGA--GLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 20 VlVIG~G~A--Gl~AAi~A~e~G~~V~lieK~~ 50 (611)
|++|=||.. |...|...+++|++|++++...
T Consensus 17 valVTGas~GIG~aiA~~la~~Ga~V~i~d~~~ 49 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 999979677899999999998799999996987
No 408
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.44 E-value=2.7 Score=20.51 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|-|||+|.=|..-|..++..|.+|+|++..+
T Consensus 5 ~VaViGaGtMG~gIA~~~a~aG~~V~l~D~~~ 36 (503)
T PRK08268 5 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 36 (503)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 89997968899999999993899089997998
No 409
>PRK08328 hypothetical protein; Provisional
Probab=82.42 E-value=2.3 Score=20.96 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=31.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
+.-|+|||.|.=|..+|..++..|. +..|++...+.-|+
T Consensus 27 ~s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD~D~ve~SN 66 (230)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGTVLLIDEQTPELSN 66 (230)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEEECCC
T ss_conf 5978998878789999999998489868987487875156
No 410
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=82.29 E-value=3.3 Score=19.94 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|-|||+|==|-|-|++|...|.+|++++-.+
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 69997686999999999986497799956999
No 411
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=82.22 E-value=1.9 Score=21.46 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=33.0
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
--|||||.|.=||.|+-=++-.|. +.+|++-..+..|+
T Consensus 25 s~vLivG~GGLGCAa~QYLa~AGvG~l~L~DfD~V~lSN 63 (240)
T TIGR02355 25 SKVLIVGLGGLGCAASQYLAAAGVGRLTLVDFDTVSLSN 63 (240)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCEEHHHH
T ss_conf 567778367034567888864366327886337100112
No 412
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.91 E-value=3.4 Score=19.85 Aligned_cols=38 Identities=34% Similarity=0.389 Sum_probs=30.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 058898996899999999998898-29999868988521
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
--|||||.|.=|+.+|.-++..|. ++.|++-..+.-|+
T Consensus 29 s~VlvvG~GGLG~~~~~yLa~aGvG~i~i~D~D~ve~sN 67 (355)
T PRK05597 29 AKVSVIGAGGLGSPALLYLAGAGVGHITIIDDDVVDLSN 67 (355)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCH
T ss_conf 968998777668999999998499759997299926121
No 413
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=81.60 E-value=3 Score=20.21 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=9.2
Q ss_pred HHHHHHHCCCCCCCCEE
Q ss_conf 99997643678654406
Q gi|254781043|r 341 SESARIFAGVDVTRDPI 357 (611)
Q Consensus 341 ~~~~~~~~g~D~~~~~i 357 (611)
...++.|.|++|..+.|
T Consensus 247 ~~qF~lwTG~~p~~e~m 263 (272)
T PRK12550 247 VEQFVLYTGVRPTDELF 263 (272)
T ss_pred HHHHHHHHCCCCCHHHH
T ss_conf 99999970999999999
No 414
>PRK06057 short chain dehydrogenase; Provisional
Probab=81.60 E-value=3.5 Score=19.77 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=19.9
Q ss_pred EEEECCCHHHH--HHHHHHHHCCCCEEEEECC
Q ss_conf 88989968999--9999999889829999868
Q gi|254781043|r 20 VVVVGAGGAGL--RATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G~AGl--~AAi~A~e~G~~V~lieK~ 49 (611)
|+||=||..|+ ..|...+++|++|++.+..
T Consensus 9 valVTGas~GIG~aia~~la~~Ga~Vvi~d~~ 40 (255)
T PRK06057 9 VAVITGGASGIGLATARRMRAEGATVVVGDID 40 (255)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 89996848889999999999869989999698
No 415
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.26 E-value=2.5 Score=20.67 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=7.2
Q ss_pred CCEEEECCCCCC
Q ss_conf 724741576565
Q gi|254781043|r 207 KLVVLATGGYGR 218 (611)
Q Consensus 207 kaVILATGG~~~ 218 (611)
+.+||.+||.++
T Consensus 128 ~vlIlGaGGaa~ 139 (289)
T PRK12548 128 KLTIIGAGGAAT 139 (289)
T ss_pred EEEEEECCHHHH
T ss_conf 479995216799
No 416
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.23 E-value=2.6 Score=20.63 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=5.0
Q ss_pred CCEEEECCCCC
Q ss_conf 72474157656
Q gi|254781043|r 207 KLVVLATGGYG 217 (611)
Q Consensus 207 kaVILATGG~~ 217 (611)
+.+||-+||.+
T Consensus 129 ~vlilGaGGaa 139 (284)
T PRK12549 129 RVVQLGAGGAG 139 (284)
T ss_pred EEEEECCCCHH
T ss_conf 18996566168
No 417
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.19 E-value=3.6 Score=19.68 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.7
Q ss_pred CEEEECCCHHHHHH--HHHHHHCCCCEEEEECC
Q ss_conf 58898996899999--99999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRA--TLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~A--Ai~A~e~G~~V~lieK~ 49 (611)
-|+||=||..|+-. |...+++|++|++++..
T Consensus 10 KvalITGassGIG~aiA~~la~~Ga~Vvl~dr~ 42 (296)
T PRK05872 10 KVVFVTGAARGVGAELARRLHARGAKVALVDLE 42 (296)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 879992710589999999999879989999899
No 418
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.09 E-value=3.6 Score=19.66 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 58898996899999999998898-29999868988521
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
-|+|||.|.=|...|..++..|. ++.+++...+..++
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v~~~N 38 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSN 38 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 99999979899999999999379719999789875001
No 419
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=81.07 E-value=2.8 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf 889899689999999999889--829999868
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKG--FKTACITKV 49 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G--~~V~lieK~ 49 (611)
|.|||+|+=|+.-|..+++.| .+|++|.+.
T Consensus 2 i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~ 33 (332)
T TIGR00745 2 IAIIGAGAVGSLYGARLARAGANHDVTLLARG 33 (332)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68995178899999998731899518999887
No 420
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.66 E-value=3 Score=20.25 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
.|-|||+|--||..|.-.++.|-+|+++++.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 15898885568878999987098489995788
No 421
>PRK06483 short chain dehydrogenase; Provisional
Probab=80.65 E-value=3.8 Score=19.56 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=23.1
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899-689999999999889829999868
Q gi|254781043|r 19 DVVVVGA-GGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~-G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|||.|+ +.=|...|...+++|++|++..+.
T Consensus 4 tVlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~ 35 (236)
T PRK06483 4 PILITGAGQRIGLALAKHLLAQGQPVIVSYRS 35 (236)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 79997899889999999999889989999598
No 422
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.51 E-value=3.4 Score=19.84 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=27.1
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 058898996899999999998898299998
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lie 47 (611)
..+.||||-.=-+.-+-.++++|++|.++-
T Consensus 3 ~~iaviGGD~Rq~~l~~~L~~~g~~V~~~g 32 (296)
T PRK08306 3 MHIAVIGGDARQLELIRKLVELGAKVSLVG 32 (296)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 489997875899999999997799799983
No 423
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.26 E-value=3.5 Score=19.75 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|-|||+|.=|..=|...+..|.+|.+.+..
T Consensus 9 ~VaVIGaG~MG~giAa~~a~~G~~V~l~D~~ 39 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7999888788899999999479859999698
No 424
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=79.86 E-value=3.6 Score=19.68 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.0
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 1058898996899999999998898-29999868
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKV 49 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~ 49 (611)
..-|||||+|-.|-.++-.+.+.|. +|.++.+.
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt 45 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGAKKITIANRT 45 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8989999960999999999997599889995475
No 425
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=79.81 E-value=4 Score=19.39 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|.|||+|.=|..-|.-+++.|-+|.+.....
T Consensus 2 KI~IiGaG~wGtAla~~la~n~~~V~l~~r~~ 33 (159)
T pfam01210 2 KIAVLGAGSWGTALAKVLARNGHEVRLWGRDE 33 (159)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 89999969999999999998799899999043
No 426
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=79.40 E-value=4.1 Score=19.30 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=31.3
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
+-.|||||.|.=|+.+|.-++..|. ++.+++-..+.-|+
T Consensus 19 ~s~VlVvG~GGLG~~v~~~La~aGVg~i~ivD~D~Ve~sN 58 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTED 58 (198)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 0989998778899999999997499869999599635335
No 427
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.37 E-value=3.4 Score=19.84 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=25.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 58898996899999999998898299998
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lie 47 (611)
-|+|+|.|.+|..||--+.++|+.+++..
T Consensus 10 kv~V~GlG~sG~aaa~~L~~~g~~~~v~~ 38 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAQLPAQPLTV 38 (468)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEE
T ss_conf 79998347879999999996699049997
No 428
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=79.07 E-value=4.2 Score=19.24 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=26.5
Q ss_pred ECEEEEC-CCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 0588989-968999999999988982999986
Q gi|254781043|r 18 YDVVVVG-AGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 18 ~DVlVIG-~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
.-++|+| .|.=|..+|.-++++|++|+|+..
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 88999858857899999999983997999958
No 429
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.48 E-value=4.4 Score=19.13 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 8898996899999999998898-29999868988521
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
|||||+|+=|+-.+--++-.|. ++.|++-..+.-|+
T Consensus 2 VlvvGaGglGce~~k~La~~Gvg~i~iiD~D~Ie~SN 38 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSN 38 (234)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCEECCCC
T ss_conf 8999488879999999998399869997599005677
No 430
>PRK08589 short chain dehydrogenase; Validated
Probab=78.48 E-value=4.4 Score=19.12 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8898996-8999999999988982999986
Q gi|254781043|r 20 VVVVGAG-GAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 20 VlVIG~G-~AGl~AAi~A~e~G~~V~lieK 48 (611)
+||-|++ .=|...|...+++|++|++.+.
T Consensus 9 alVTGas~GIG~aiA~~la~~Ga~Vv~~d~ 38 (272)
T PRK08589 9 AVITGASTGIGQASAIALAQEGAYVLAVDI 38 (272)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 999782569999999999986999999838
No 431
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.14 E-value=3.6 Score=19.68 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=25.4
Q ss_pred CEEEECCCHHHHHH-HHHHHHCCCCEEEEEC
Q ss_conf 58898996899999-9999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRA-TLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~A-Ai~A~e~G~~V~lieK 48 (611)
-|.+||-|.+|+++ |.-++++|.+|..-++
T Consensus 10 ~ih~iGigG~GmsalA~~l~~~G~~V~gsD~ 40 (459)
T PRK00421 10 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDL 40 (459)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8999986688899999999968993999889
No 432
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=78.13 E-value=3.8 Score=19.54 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=7.0
Q ss_pred CCEEEECCCCCC
Q ss_conf 724741576565
Q gi|254781043|r 207 KLVVLATGGYGR 218 (611)
Q Consensus 207 kaVILATGG~~~ 218 (611)
+.+|+.+||.++
T Consensus 126 ~~lIlGaGGaa~ 137 (288)
T PRK12749 126 TMVLLGAGGAST 137 (288)
T ss_pred EEEEEECCHHHH
T ss_conf 689982345889
No 433
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.46 E-value=4.7 Score=18.93 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=32.4
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
...|||||.|.-|+.+|.-++..|. ++.+++...+.-++
T Consensus 21 ~s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v~~sn 60 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEED 60 (197)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 0959998878899999999998379869999899187777
No 434
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=77.07 E-value=1.1 Score=23.16 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCC-C-CCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 6789999998731230311315652000134-4-301246898058708995067247415765
Q gi|254781043|r 155 AILHTLYGQALKNNAEFFIEYFALDLIINSE-G-CCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~d-G-~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
.++..|..-+.+++|++-++..+.++-++.. | +|.-++-. ..+++.....-.-.|+-|.|.
T Consensus 228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~-~~d~~~ieLt~dDlVfvTNgs 290 (587)
T COG4716 228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHV-LGDAETIELTPDDLVFVTNGS 290 (587)
T ss_pred HHHHHHHHHHHHCCCCEEECCEEEEEEECCCCCHHHHHHHHH-HCCCCEEECCCCCEEEEECCE
T ss_conf 889999999987397547256776543114763668899987-357552543787659985560
No 435
>PRK00784 cobyric acid synthase; Provisional
Probab=77.02 E-value=0.42 Score=25.79 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=10.9
Q ss_pred CHHHHHHHHH--HHHCCCCEEEE
Q ss_conf 6899999999--99889829999
Q gi|254781043|r 26 GGAGLRATLG--MAEKGFKTACI 46 (611)
Q Consensus 26 G~AGl~AAi~--A~e~G~~V~li 46 (611)
|=+=++||+. .+++|.+|.=.
T Consensus 16 GKS~l~aaLCRi~~~~G~~VaPF 38 (492)
T PRK00784 16 GKSTLVAGLCRILARRGLRVAPF 38 (492)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 79999999999999589855785
No 436
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=76.91 E-value=2.7 Score=20.46 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=5.5
Q ss_pred CEEEECCCCCCCC
Q ss_conf 2474157656543
Q gi|254781043|r 208 LVVLATGGYGRAY 220 (611)
Q Consensus 208 aVILATGG~~~ly 220 (611)
-||.|--|+.+|.
T Consensus 91 ~vv~Ai~G~aGL~ 103 (392)
T PRK12464 91 LVVSSIVGVAGLL 103 (392)
T ss_pred EEEEECCCHHHHH
T ss_conf 8999445353469
No 437
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.86 E-value=4.9 Score=18.83 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 8898996899999999998898-29999868988521
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
|||||+|+-|+-.+--++-.|. ++.|++-..+..|+
T Consensus 2 VlvvGaGglG~e~lk~La~~Gvg~i~ivD~D~Ie~SN 38 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSN 38 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 8998888889999999998289859997199226101
No 438
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase; InterPro: IPR004572 Protoporphyrinogen oxidase (1.3.3.4 from EC) oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll, in the penultimate step in heme and porphyrin biosynthesis. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.; GO: 0004729 protoporphyrinogen oxidase activity, 0006118 electron transport, 0006779 porphyrin biosynthetic process.
Probab=76.82 E-value=4.6 Score=19.02 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=30.8
Q ss_pred EECEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCC
Q ss_conf 10588989968999999999988------982999986898852
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEK------GFKTACITKVFPTRS 54 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~------G~~V~lieK~~~~~g 54 (611)
..+++|||+|..|++.+...... +.++++.++.+..+|
T Consensus 2 ~~~~~~~ggg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg 45 (556)
T TIGR00562 2 KKEVVVVGGGISGLCAAYFLSKERPDKNLGVELTLFEADDRVGG 45 (556)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
T ss_conf 74168861761357888887652221247730588724665575
No 439
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=76.70 E-value=4.9 Score=18.80 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999998888999999999
Q gi|254781043|r 518 SDLVETLELQNLMINAIATV 537 (611)
Q Consensus 518 ~el~~~~el~~~l~~Ae~~~ 537 (611)
.++..+=-+.....+|++|.
T Consensus 445 ~dl~~gAni~gf~rVA~Am~ 464 (469)
T PTZ00079 445 KDLQAGANIAGFLKVADSYI 464 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 98898212999999999999
No 440
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.65 E-value=4 Score=19.41 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=24.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-|+|+|-|.+|..+|--+.++|..|++-++
T Consensus 2 Ki~V~GlG~sG~s~a~~L~~~g~~~i~dD~ 31 (401)
T PRK03815 2 KISLFGYGKTTKALARFFVKNGGVDIYDDK 31 (401)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEECC
T ss_conf 399984777189999999948797999899
No 441
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=75.99 E-value=5.1 Score=18.68 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=26.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-|.|+|+|.=|+..|..+++.|.+|+++-.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R 31 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVR 31 (307)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 599987878999999999858995799810
No 442
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.98 E-value=5.1 Score=18.67 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=28.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 58898996899999999998898299998689
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
-|-|||+|.=|..=|...+..|.+|.|.+..+
T Consensus 4 kVAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~p 35 (489)
T PRK07531 4 KAACIGGGVIGGGWAARFLLNGWDVAVFDPHP 35 (489)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 79998718868999999995799699994887
No 443
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.35 E-value=3.7 Score=19.64 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=29.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 8898996899999999998898-29999868988521
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
|||||+|.=|+..|-.+...|. ++.+|+.+.+.-|+
T Consensus 2 vLllGaGtLGc~var~L~~~GV~~it~VD~~~Vs~SN 38 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSN 38 (307)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEEECCEEECCC
T ss_conf 7998577520699999998369858998499885566
No 444
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=74.71 E-value=3.7 Score=19.58 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.5
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCCEEEEEC
Q ss_conf 88989968999999999988--982999986
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEK--GFKTACITK 48 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~--G~~V~lieK 48 (611)
|=|||+|.-|-+.|..+|++ +.+|+|++=
T Consensus 4 isvIGAGfvGaTTAf~lA~KeLard~VLlDi 34 (308)
T TIGR01763 4 ISVIGAGFVGATTAFLLAEKELARDVVLLDI 34 (308)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 8997068612589999986740671689850
No 445
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.33 E-value=4.1 Score=19.29 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=22.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 588989968999999999988982999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTAC 45 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~l 45 (611)
-|+|+|.|.+|+.+|--+.+++..|.+
T Consensus 9 kvlV~GlG~sG~s~a~~L~~~~~~~~v 35 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKTQPQLTV 35 (438)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCCEE
T ss_conf 499990678589999999966998469
No 446
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=73.84 E-value=3.4 Score=19.86 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=21.8
Q ss_pred EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf 995067247415765654334210640144488788751-36533332
Q gi|254781043|r 202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME 248 (611)
Q Consensus 202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE 248 (611)
..+..|.||+| |||+ .|-|.++.+|. ||.+.=-|
T Consensus 206 ~liaGK~vVV~--GYG~-----------cGkG~A~r~rglGA~V~VtE 240 (430)
T pfam05221 206 VMIAGKVAVVC--GYGD-----------VGKGCAASLRGQGARVIVTE 240 (430)
T ss_pred CEECCCEEEEE--CCCC-----------CCHHHHHHHHHCCCEEEEEC
T ss_conf 13427679995--5675-----------35789999842798899954
No 447
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.69 E-value=3.6 Score=19.71 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=22.3
Q ss_pred EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf 995067247415765654334210640144488788751-36533332
Q gi|254781043|r 202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME 248 (611)
Q Consensus 202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE 248 (611)
..+..|.||+| |||+ .|-|.++.++. ||.+.=-|
T Consensus 198 ~liaGK~vVV~--GYG~-----------~GkG~A~r~rglGA~V~VtE 232 (413)
T cd00401 198 VMIAGKVAVVA--GYGD-----------VGKGCAQSLRGQGARVIVTE 232 (413)
T ss_pred HEECCCEEEEE--CCCC-----------CCHHHHHHHHHCCCEEEEEC
T ss_conf 12137779994--5776-----------35688998865898899971
No 448
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=73.64 E-value=5.1 Score=18.72 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=34.8
Q ss_pred HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECC
Q ss_conf 9999873123031131565200013443012468980587089950672474157
Q gi|254781043|r 160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATG 214 (611)
Q Consensus 160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATG 214 (611)
|...+.+.|++++.+.....++ . ++++.++- ..+|. .+.|.-||+|+|
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~-g-~~~~~~vr---~~DG~--~i~ad~VV~a~G 240 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIV-G-EDKVEGVR---FADGT--EIPADLVVMAVG 240 (793)
T ss_pred HHHHHHHHCCEEECCCHHHHHH-C-CCCEEEEE---ECCCC--CCCCEEEEEECC
T ss_conf 9999886060453132024564-5-76403676---05687--344206999623
No 449
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=73.63 E-value=2.6 Score=20.64 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=4.0
Q ss_pred HHHHHHHHHCC
Q ss_conf 98788766509
Q gi|254781043|r 470 REKMQRAMQLD 480 (611)
Q Consensus 470 ~~~Lq~iM~~~ 480 (611)
.+-+.++|+.+
T Consensus 343 ~~iie~~l~~~ 353 (385)
T COG0743 343 ARIIEKALERH 353 (385)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999860
No 450
>PRK06197 short chain dehydrogenase; Provisional
Probab=73.50 E-value=5.9 Score=18.27 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCEEEEEECEEEECCCHHH--HHHHHHHHHCCCCEEEEECCC
Q ss_conf 98620005344133231058898996899--999999998898299998689
Q gi|254781043|r 1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAG--LRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 1 ~~~~~~~~~~~~~~d~~~DVlVIG~G~AG--l~AAi~A~e~G~~V~lieK~~ 50 (611)
|+||.--....| |..=-|+||=||.+| +.+|..++++|++|++..+..
T Consensus 1 ~~~~~~~~~~ip--DL~GK~~lITGa~sGIG~~~A~~La~~ga~Vil~~R~~ 50 (306)
T PRK06197 1 MKNTKWTAADIP--DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL 50 (306)
T ss_pred CCCCCCCHHHCC--CCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 987899865688--98999999916895999999999997849899997989
No 451
>PRK09414 glutamate dehydrogenase; Provisional
Probab=72.86 E-value=6.1 Score=18.18 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998888999999999
Q gi|254781043|r 519 DLVETLELQNLMINAIATV 537 (611)
Q Consensus 519 el~~~~el~~~l~~Ae~~~ 537 (611)
++..+--+.....+|++|.
T Consensus 423 ~l~~gA~i~g~~rVA~Am~ 441 (446)
T PRK09414 423 NYVLGANIAGFVKVADAML 441 (446)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 8999858999999999999
No 452
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=72.57 E-value=0.7 Score=24.34 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=4.7
Q ss_pred HHCCCCEEEE
Q ss_conf 9889829999
Q gi|254781043|r 37 AEKGFKTACI 46 (611)
Q Consensus 37 ~e~G~~V~li 46 (611)
+..|.+|.=.
T Consensus 27 ~~~G~~V~PF 36 (486)
T COG1492 27 ARRGYRVAPF 36 (486)
T ss_pred HHCCCCCCCC
T ss_conf 7357754787
No 453
>PRK10637 cysG siroheme synthase; Provisional
Probab=72.52 E-value=6.2 Score=18.13 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=29.0
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 058898996899999999998898299998689
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
--|||||+|--+.+=+-.+.+.|++|.|+....
T Consensus 13 k~vLVVGGG~vA~rK~~~Ll~agA~VtViap~~ 45 (457)
T PRK10637 13 RDCLIVGGGDVAERKARLLLDAGARLTVNALAF 45 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 869998998999999999987898799989989
No 454
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=72.17 E-value=4.1 Score=19.29 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5344133231058898996899999999998898299998
Q gi|254781043|r 8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 8 ~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lie 47 (611)
.+.++--..-..|||+|-|.||.+-|--+-..|..|+-|+
T Consensus 392 ~~plp~~~tg~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~ID 431 (1048)
T PRK06567 392 YAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAID 431 (1048)
T ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 6878888899648999248652018899874787289865
No 455
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=71.87 E-value=6.4 Score=18.03 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 68999999999988--9829999868988521041165342513789999999999989984588779999999999889
Q gi|254781043|r 26 GGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAP 103 (611)
Q Consensus 26 G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~ 103 (611)
-..+|..|+...+. ..+++|+.-. +.+++|++-+ .. +.+. .-..++-...+.....
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~----g~~F~AGaDl------------~e-~~~~-----~~~~~~~~~~~~~~~~ 92 (715)
T PRK11730 35 TLASLGEALDALEAQSDLKGLLLTSA----KDAFIVGADI------------TE-FLSL-----FAVPEEELSQWLHFAN 92 (715)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECC----CCEEEECCCH------------HH-HHHC-----CCCCHHHHHHHHHHHH
T ss_conf 99999999999850999759999789----9815727087------------87-8525-----4688788988888889
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999999869981
Q gi|254781043|r 104 QSVYELEHYGVPF 116 (611)
Q Consensus 104 ~~i~~Le~~Gv~f 116 (611)
..++.++.+..|.
T Consensus 93 ~~~~~ie~~~kPv 105 (715)
T PRK11730 93 SIFNRLEDLPVPT 105 (715)
T ss_pred HHHHHHHCCCCCE
T ss_conf 9999997199988
No 456
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=71.71 E-value=6.5 Score=18.01 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 5889899689999999999889829999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACI 46 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~li 46 (611)
-|+|-|.|.-|..+|..+.+.|++|++.
T Consensus 30 ~VaIqG~GnVG~~~A~~l~~~Gakvvv~ 57 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999898799999999999679979998
No 457
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.54 E-value=6.6 Score=17.98 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 889899-689999999999889829999868
Q gi|254781043|r 20 VVVVGA-GGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~-G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
+||-|+ +.=|...|.+.+++|++|++..+.
T Consensus 8 alVTG~s~GIG~aia~~la~~Ga~V~i~~r~ 38 (258)
T PRK07890 8 VVVSGVGPGLGTTLAVRAAREGADVVLAART 38 (258)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9996856589999999999879989999798
No 458
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.08 E-value=3.7 Score=19.60 Aligned_cols=34 Identities=35% Similarity=0.549 Sum_probs=21.3
Q ss_pred EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf 995067247415765654334210640144488788751-36533332
Q gi|254781043|r 202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME 248 (611)
Q Consensus 202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE 248 (611)
..+..|.||+| |||+ .|-|.++.+|. ||.+.=-|
T Consensus 204 ~llaGK~vVV~--GYG~-----------~GkG~A~~arg~GA~ViVtE 238 (427)
T PRK05476 204 VLIAGKVVVVA--GYGD-----------VGKGSAQRLRGLGARVIVTE 238 (427)
T ss_pred CEECCCEEEEE--CCCC-----------CCCHHHHHHHCCCCEEEEEE
T ss_conf 21257379995--5665-----------56008998741898799980
No 459
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=70.49 E-value=3.5 Score=19.75 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf 995067247415765654334210640144488788751-36533332
Q gi|254781043|r 202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME 248 (611)
Q Consensus 202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE 248 (611)
..+..|.||+| |||. .|-|.++.++. ||.+.=-|
T Consensus 250 ~liaGK~vVV~--GYG~-----------~GkG~A~~~rg~GA~ViVtE 284 (476)
T PTZ00075 250 VMIAGKTVVVC--GYGD-----------VGKGCAQALRGFGARVVVTE 284 (476)
T ss_pred CEECCCEEEEE--ECCC-----------CCHHHHHHHCCCCCEEEEEC
T ss_conf 34547589995--0453-----------01214766535897899961
No 460
>PRK04940 hypothetical protein; Provisional
Probab=70.48 E-value=6.1 Score=18.17 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=23.2
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 0588989968999999999988982999986
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-++|+||+|+.|..|..-+-.-|.+.+|+..
T Consensus 60 ~~~liiGssLGGyyA~~l~~~~~~KaVliNP 90 (179)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNP 90 (179)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 8837995472389999999982986799889
No 461
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.99 E-value=7.1 Score=17.76 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=10.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 322222232156775566542026
Q gi|254781043|r 414 SLIDLVVFGRAAVIRASEMIDKSS 437 (611)
Q Consensus 414 sl~~~~vfG~~Ag~~aa~~~~~~~ 437 (611)
++...++.++.--+.+-+++....
T Consensus 280 ~i~GS~~g~~~d~~e~l~f~~~g~ 303 (339)
T COG1064 280 SIVGSLVGTRADLEEALDFAAEGK 303 (339)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 899972489999999999998189
No 462
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=69.80 E-value=7.1 Score=17.74 Aligned_cols=18 Identities=22% Similarity=0.088 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999999999996262550
Q gi|254781043|r 530 MINAIATVYSAEARKESR 547 (611)
Q Consensus 530 l~~Ae~~~~aal~R~ESR 547 (611)
..+|.++.++|+..--.|
T Consensus 389 ~~vA~AVa~aA~~~GvA~ 406 (432)
T COG0281 389 SRVAVAVAKAAMEEGVAR 406 (432)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999999999999728666
No 463
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=69.72 E-value=6.6 Score=17.96 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=26.3
Q ss_pred ECEEEECCCHHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 0588989968999999999988-982999986
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEK-GFKTACITK 48 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~-G~~V~lieK 48 (611)
--|+|+|.|.+|...|--+++. +.+|.+.++
T Consensus 24 ~~v~v~G~G~vg~~ia~ll~~~~~k~V~~~d~ 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf 58999778604289999999817970787155
No 464
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.60 E-value=6.2 Score=18.14 Aligned_cols=103 Identities=9% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC------CCCCCCCHHHHHHH
Q ss_conf 3356643047643222222321---56775566542026566764002357888631010------37887136899987
Q gi|254781043|r 402 ASVHGANRLGSNSLIDLVVFGR---AAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLR------HADGHVPTAALREK 472 (611)
Q Consensus 402 ~g~hGanrlggnsl~~~~vfG~---~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~i~~~ 472 (611)
.|+|=.|...-.-|.|-...-+ -+-..+..+++.....+....+.---...|+..+. -...+.++.++-+.
T Consensus 444 iG~HFfnP~~~m~LVEVi~g~~Ts~et~~~~~~~~~~lgK~pv~v~d~pGFi~NRil~~~~~ea~~l~~eG~~~~~ID~a 523 (706)
T PRK11154 444 IGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVKDGAGFYVNRILAPYMNEAARLLLEGEPIEHIDAA 523 (706)
T ss_pred EEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 55442577442642799437898389999999999975987899632374179999999999999999769999999999
Q ss_pred HHHHHHCCCEEEE--CHHHHHHHHHHHHHHHHHHH
Q ss_conf 8876650972687--58999999999999999984
Q gi|254781043|r 473 MQRAMQLDAGVFR--TQDSLSDGCRNLSCLWDEMA 505 (611)
Q Consensus 473 Lq~iM~~~~gi~R--~~~~L~~al~~L~~l~~~~~ 505 (611)
+++ .---+|+++ +.-+|..++...+.+.+.+.
T Consensus 524 ~~~-~G~pmGPf~l~D~vGlDv~~~v~~~l~~~~g 557 (706)
T PRK11154 524 LVK-FGFPVGPITLLDEVGIDVGTKIIPILEAALG 557 (706)
T ss_pred HHH-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 997-5998785688775267889999999998728
No 465
>pfam06408 consensus
Probab=69.19 E-value=7.4 Score=17.66 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=61.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHC---CCCC
Q ss_conf 5889899689999999999889-----8299998689885210411653425137899999999999899845---8877
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGS---DWLG 90 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g---~~l~ 90 (611)
-||+||.|.=|-. -+-+-++- .++++|++..-...-..+..-|+.......++|+....+.-.++.| +++.
T Consensus 3 ~Iv~iGfGSIgq~-~LPLl~rH~~~~~~~Itiid~~d~~~~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~gdflv 81 (471)
T pfam06408 3 PILMIGFGSIGRG-TLPLIERHFKFDRSNIVVIDPRDTKKDRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGGQGFCV 81 (471)
T ss_pred CEEEECCCHHHHH-HHHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 7799875716742-067888760788789899767875456677875697688614587889999999862677788799
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998899999999869981
Q gi|254781043|r 91 DVDAIQYLAMEAPQSVYELEHYGVPF 116 (611)
Q Consensus 91 d~~lv~~~~~~a~~~i~~Le~~Gv~f 116 (611)
|-.. --.+.+.++|+.+.|+.+
T Consensus 82 nLSv----niss~~ii~~C~e~GvlY 103 (471)
T pfam06408 82 NLSV----DTSSLDLMRLCREHGVLY 103 (471)
T ss_pred EEEC----CCCHHHHHHHHHHHCCEE
T ss_conf 8011----578899999999809877
No 466
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=68.25 E-value=7.7 Score=17.53 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=31.6
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf 1058898996899999999998898-29999868988521
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH 55 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~ 55 (611)
+.-|+|||-|.-|.+|+=++++.|. +..||++..+.-++
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN 69 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTN 69 (263)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECHHCCCCC
T ss_conf 0948999458453999999998188818997120102223
No 467
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=67.80 E-value=5.7 Score=18.38 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=29.4
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 105889899689999999999889829999868
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
...|.|||+|.=|---|--|++.|-.|.|-+..
T Consensus 5 ~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r 37 (508)
T TIGR02279 5 VVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIR 37 (508)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 106899646852103899998259848872288
No 468
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=67.78 E-value=7.9 Score=17.47 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=27.7
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 0588989968999999999988982999986
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
--|+|-|.|.-|..+|..+.+.|++|+-++-
T Consensus 24 ~~vaVqGfGnVG~~~a~~l~~~GakvvavsD 54 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9999989889999999999985998999985
No 469
>PRK07831 short chain dehydrogenase; Provisional
Probab=66.78 E-value=8.2 Score=17.34 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=22.4
Q ss_pred CEEEECCCH--HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 588989968--9999999999889829999868
Q gi|254781043|r 19 DVVVVGAGG--AGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~--AGl~AAi~A~e~G~~V~lieK~ 49 (611)
=+||.|++. =|...|...+++|++|++.+..
T Consensus 18 valVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~ 50 (261)
T PRK07831 18 VVVVTAAAGTGIGSATARRALEEGADVVISDIH 50 (261)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 499949996478999999999879989998087
No 470
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.75 E-value=8.2 Score=17.34 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEECCCHHH--HHHHHHHHHCCCCEEEEECC
Q ss_conf 8898996899--99999999889829999868
Q gi|254781043|r 20 VVVVGAGGAG--LRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G~AG--l~AAi~A~e~G~~V~lieK~ 49 (611)
|++|=||..| ...|...+++|++|++....
T Consensus 7 valITGas~GIG~aiA~~la~~Ga~V~i~~r~ 38 (235)
T PRK07326 7 AALVTGGSKGIGFAVAEALAAAGYRVAICARD 38 (235)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99993826799999999999879999999898
No 471
>PRK06484 short chain dehydrogenase; Validated
Probab=66.66 E-value=8.3 Score=17.33 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=20.4
Q ss_pred EEEECCCHH--HHHHHHHHHHCCCCEEEEECC
Q ss_conf 889899689--999999999889829999868
Q gi|254781043|r 20 VVVVGAGGA--GLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G~A--Gl~AAi~A~e~G~~V~lieK~ 49 (611)
|+||=||.. |...|...+++|++|+++++.
T Consensus 7 valVTGas~GIG~aiA~~la~~Ga~V~~~dr~ 38 (530)
T PRK06484 7 VVLVTGAAGGIGRACCQRFARAGDRVVMADRD 38 (530)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99997836689999999999879999999688
No 472
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.22 E-value=8.4 Score=17.27 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.3
Q ss_pred EEEECCC---HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8898996---89999999999889829999868
Q gi|254781043|r 20 VVVVGAG---GAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G---~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
+||.|++ .=|...|..++++|++|++..+.
T Consensus 10 alITGaa~~~GIG~aiA~~La~~GA~V~i~~~~ 42 (271)
T PRK06505 10 GLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999799998549999999999869999998186
No 473
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=65.26 E-value=8.8 Score=17.15 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=25.2
Q ss_pred CEEEEEECEEEECCCHHHHH--HHHHHHHCCCCEEEEECCC
Q ss_conf 13323105889899689999--9999998898299998689
Q gi|254781043|r 12 TYVDHSYDVVVVGAGGAGLR--ATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 12 ~~~d~~~DVlVIG~G~AGl~--AAi~A~e~G~~V~lieK~~ 50 (611)
++|+.+=-|++|=||..|+- .|...+++|++|++++...
T Consensus 3 ~~~~L~gKvalVTGgs~GIG~aia~~la~~Ga~V~~~d~~~ 43 (266)
T PRK06171 3 TWLNLQGKIIIVTGGSSGIGLAIVEELLAQGANVQMVDIHG 43 (266)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 86389999799947787899999999998799999997885
No 474
>PRK05693 short chain dehydrogenase; Provisional
Probab=65.15 E-value=8.8 Score=17.14 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=19.7
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 889899-689999999999889829999868
Q gi|254781043|r 20 VVVVGA-GGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~-G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
|||-|+ ..=|...|.+.+++|.+|++..+.
T Consensus 4 vlITGassGIG~alA~~la~~G~~V~~~~R~ 34 (274)
T PRK05693 4 VLITGCSSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9994888589999999999879999999799
No 475
>TIGR00518 alaDH alanine dehydrogenase; InterPro: IPR008141 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0000286 alanine dehydrogenase activity, 0006118 electron transport.
Probab=64.92 E-value=4.8 Score=18.86 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=21.1
Q ss_pred CCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 413323105889899689999999999889829999868988
Q gi|254781043|r 11 YTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 (611)
Q Consensus 11 ~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~ 52 (611)
.++.+.++-|-+.-+|.+ +...+|-+|++-+-....
T Consensus 7 ~e~k~~e~~~~~~p~g~~------~l~~~gh~~~~~~g~g~g 42 (372)
T TIGR00518 7 KEIKNNEFRVALTPGGVA------ELLSRGHEVLVEAGAGLG 42 (372)
T ss_pred CCCCCCCCEEEECCHHHH------HHHHCCCEEEEECCCCCC
T ss_conf 422465322432623589------886166546754166556
No 476
>KOG1371 consensus
Probab=64.85 E-value=8.5 Score=17.26 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=27.0
Q ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 588989-9689999999999889829999868
Q gi|254781043|r 19 DVVVVG-AGGAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG-~G~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
-|||.| +|.-|.-+++++.++|..|++++-.
T Consensus 4 ~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl 35 (343)
T KOG1371 4 HVLVTGGAGYIGSHTVLALLKRGYGVVIVDNL 35 (343)
T ss_pred EEEEECCCCCEEHHHHHHHHHCCCCEEEEECC
T ss_conf 79996687631059999998679817998243
No 477
>pfam05728 UPF0227 Uncharacterized protein family (UPF0227). Despite being classed as uncharacterized proteins, the members of this family are almost certainly enzymes that are distantly related to the pfam00561.
Probab=64.68 E-value=9 Score=17.08 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=19.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
++++|||.+.|..|..=|-+-+.+.+||..
T Consensus 60 ~~~LiGSSLGGfyAt~lae~~~~~aVLINP 89 (187)
T pfam05728 60 NPLLVGSSLGGYYATWLGFRCGLRQVLFNP 89 (187)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 748994270799999999863987799758
No 478
>PRK08017 short chain dehydrogenase; Provisional
Probab=64.62 E-value=9 Score=17.07 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8898996-89999999999889829999868
Q gi|254781043|r 20 VVVVGAG-GAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G-~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
|||.|++ .=|...|.+.+++|.+|+++.+.
T Consensus 5 vlITGassGIG~a~A~~la~~G~~V~~~~r~ 35 (256)
T PRK08017 5 VLITGCSSGIGLESALELKRQGFRVLAGCRK 35 (256)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9996587689999999999879999999699
No 479
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=63.97 E-value=6.1 Score=18.21 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=7.8
Q ss_pred EEEEEE-C----CCCHHHHH
Q ss_conf 468861-1----17989999
Q gi|254781043|r 320 HIHLYL-N----HLDPAVLQ 334 (611)
Q Consensus 320 ~v~ld~-~----~~~~~~l~ 334 (611)
-+||+. + +++++.++
T Consensus 156 ~iYLEaGSGa~~~vp~~vi~ 175 (231)
T pfam01884 156 IFYLEAGSGAPGPVPEEVIA 175 (231)
T ss_pred EEEEECCCCCCCCCCHHHHH
T ss_conf 89997589999998999999
No 480
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.61 E-value=9.4 Score=16.95 Aligned_cols=31 Identities=19% Similarity=0.391 Sum_probs=20.0
Q ss_pred CEEEECCCHHHHH--HHHHHHHCCCCEEEEECC
Q ss_conf 5889899689999--999999889829999868
Q gi|254781043|r 19 DVVVVGAGGAGLR--ATLGMAEKGFKTACITKV 49 (611)
Q Consensus 19 DVlVIG~G~AGl~--AAi~A~e~G~~V~lieK~ 49 (611)
-|+||=||..|+- .|...+++|++|+++...
T Consensus 9 KvalVTGas~GIG~aia~~la~~Ga~Vv~~~~~ 41 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 989994867689999999999869999997898
No 481
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=63.34 E-value=9.5 Score=16.92 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=26.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 58898996899999999998898299998
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lie 47 (611)
.|||++.|-..+++.-++.+.|.+++++-
T Consensus 3 kvLIanrGeiA~ri~rt~re~gi~~v~i~ 31 (109)
T pfam00289 3 KVLVANRGEIAVRIIRALRELGIETVAVN 31 (109)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89998887999999999998699799996
No 482
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=63.30 E-value=6.6 Score=17.95 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=8.8
Q ss_pred CCCCCEECCHHHHHHHHHCC
Q ss_conf 21064014448878875136
Q gi|254781043|r 223 ATSAHTCTGDGAGMVARAGL 242 (611)
Q Consensus 223 ~t~~~~~tGdG~~mA~~aGa 242 (611)
+.||....|.=+..+-..+.
T Consensus 87 s~np~~lig~~~~aa~~~~~ 106 (229)
T PRK04169 87 SRDPYWIIGAQVEAAKEYGD 106 (229)
T ss_pred CCCCHHHHHHHHHHHHHHHC
T ss_conf 89913667899989987510
No 483
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=63.19 E-value=9.6 Score=16.91 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588989968999999999988982999986
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK 48 (611)
-|.|||-|+=|-+-|+++++.|.+|.-++.
T Consensus 3 kI~IiGlGLIGgSla~al~~~~~~V~g~d~ 32 (280)
T PRK07417 3 NIGIVGLGLIGGSLGLDLRSLGHTVYGVSR 32 (280)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899993185799999999968997999979
No 484
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=63.10 E-value=5.9 Score=18.28 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=47.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC--CCEE-ECCCCCCCCCCCCCEEECC
Q ss_conf 688611179899999853799999764367865440675203310012342157--7158-5377888533227603402
Q gi|254781043|r 321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNY--WGEV-LDANSKNPERFAPGLMAIG 397 (611)
Q Consensus 321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~--~g~v-~~~~~~~~~t~i~GLyAaG 397 (611)
|-+|++ +++.++..| .+....|-|+|+.- .+-||.+.. ..+. +....-|..-...|-|=.-
T Consensus 492 l~~DvT--~e~~v~~~f---~~v~~~yGGvD~vv-----------~nAGi~~S~p~~~t~r~~~W~l~~di~atG~FLVa 555 (709)
T TIGR02632 492 LKLDVT--DEEAVKAAF---AEVALAYGGVDIVV-----------NNAGIAVSSPLEETERLEEWDLNLDILATGYFLVA 555 (709)
T ss_pred EEEEEC--CHHHHHHHH---HHHHHHHCCEEEEE-----------ECCCHHCCCCCHHHHHHHHHHHCCEEEEECCHHHH
T ss_conf 276317--589999999---99999749847876-----------52530105770232215543201201012003588
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12203356643047643222222321567755665420
Q gi|254781043|r 398 EAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK 435 (611)
Q Consensus 398 e~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~ 435 (611)
.-|. -+.=.--||||-..=+.+-+-.|++++..|+..
T Consensus 556 reA~-r~~~~Q~lGG~~VfiaSkNav~A~kn~~AY~aa 592 (709)
T TIGR02632 556 REAA-RLMRKQGLGGNIVFIASKNAVVAGKNASAYSAA 592 (709)
T ss_pred HHHH-HHHHHCCCCCCEEEECCEEEEEECCCCCHHHHH
T ss_conf 8999-999731798556776110001117884055589
No 485
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=62.73 E-value=9.8 Score=16.85 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEE
Q ss_conf 889899689999999999889829999868988521041165342
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA 64 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~ 64 (611)
|+|=|.|..|..+|.-+.+.|++|+-|+ ..+++++..-|++
T Consensus 41 vaIQGfGnVG~~aA~~l~e~GakvVaVs----D~~G~i~~~~Gld 81 (254)
T cd05313 41 VAISGSGNVAQYAAEKLLELGAKVVTLS----DSKGYVYDPDGFT 81 (254)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEE----CCCCEEECCCCCC
T ss_conf 9998977999999999997799799998----5785088799998
No 486
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.60 E-value=9.8 Score=16.84 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88989968999999999988982999
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTAC 45 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~l 45 (611)
|+|+|.|.+|+.+|--+++.+..|+.
T Consensus 9 v~V~GlG~sG~a~~~~L~~~~~~~~~ 34 (450)
T PRK01368 9 IGVFGLGKTGISVYEELQNKYDLIVY 34 (450)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEE
T ss_conf 89995878799999999719998999
No 487
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=62.56 E-value=8.6 Score=17.22 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88989968999999999988982999986898
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~ 51 (611)
|+|.|=|=.|=-+|.+++..|++|+|-|-.|+
T Consensus 212 vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI 243 (420)
T COG0499 212 VVVAGYGWVGRGIAMRLRGMGARVIVTEVDPI 243 (420)
T ss_pred EEEECCCCCCHHHHHHHHCCCCEEEEEECCCH
T ss_conf 99963564436699986228986999824817
No 488
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.09 E-value=10 Score=16.78 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=0.0
Q ss_pred EEEECCC---HHHHHHHHHHHHCCCCEEEE
Q ss_conf 8898996---89999999999889829999
Q gi|254781043|r 20 VVVVGAG---GAGLRATLGMAEKGFKTACI 46 (611)
Q Consensus 20 VlVIG~G---~AGl~AAi~A~e~G~~V~li 46 (611)
+||-|++ .=|...|.+.+++|++|++.
T Consensus 9 alVTGas~~~GIG~aiA~~la~~Ga~Vvi~ 38 (257)
T PRK12859 9 AVVTGVSRLDGIGAAICKELAEAGYDIFFT 38 (257)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 999288999862999999999879989998
No 489
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=61.97 E-value=8.4 Score=17.29 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898996899999999998898299998
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lie 47 (611)
|||||+|..|..-.+-....=.+++++|
T Consensus 80 VLiiGgGdG~tlRevlkh~~ve~i~~VE 107 (282)
T COG0421 80 VLIIGGGDGGTLREVLKHLPVERITMVE 107 (282)
T ss_pred EEEECCCCCHHHHHHHHCCCCCEEEEEE
T ss_conf 9998897669999998368843379997
No 490
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=60.99 E-value=10 Score=16.65 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEECCCHHHH--HHHHHHHHCCCCEEEEECCC
Q ss_conf 88989968999--99999998898299998689
Q gi|254781043|r 20 VVVVGAGGAGL--RATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 20 VlVIG~G~AGl--~AAi~A~e~G~~V~lieK~~ 50 (611)
|+|+|-|..|. .+|--++++|..|.+.+..+
T Consensus 2 i~i~GlG~tG~G~a~a~~L~~~g~~~~~~D~~~ 34 (476)
T TIGR01087 2 ILILGLGKTGRGVAVARFLKKKGAEVTVTDDDP 34 (476)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 789986751078999999997298799998452
No 491
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.98 E-value=10 Score=16.65 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEECCC---HHHHHHHHHHHHCCCCEEEE
Q ss_conf 8898996---89999999999889829999
Q gi|254781043|r 20 VVVVGAG---GAGLRATLGMAEKGFKTACI 46 (611)
Q Consensus 20 VlVIG~G---~AGl~AAi~A~e~G~~V~li 46 (611)
+||-|++ .=|...|...+++|++|++.
T Consensus 9 ~lVTGaag~rGIG~aiA~~la~~Ga~Vvi~ 38 (256)
T PRK08594 9 YVVMGVANKRSIAWGIARSLHNAGAKLVFT 38 (256)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 999899999639999999999879999997
No 492
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=60.64 E-value=11 Score=16.61 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=0.0
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8898996-89999999999889829999868
Q gi|254781043|r 20 VVVVGAG-GAGLRATLGMAEKGFKTACITKV 49 (611)
Q Consensus 20 VlVIG~G-~AGl~AAi~A~e~G~~V~lieK~ 49 (611)
|||-|++ .=|...|.+.+++|++|++..+.
T Consensus 3 VlITGas~GIG~aiA~~la~~Ga~V~i~~r~ 33 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRN 33 (259)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9997587789999999999879999999799
No 493
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=60.47 E-value=11 Score=16.60 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCC-CCEEEE
Q ss_conf 889899689999999999889-829999
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKG-FKTACI 46 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G-~~V~li 46 (611)
|||||+|--|.-+|-.+.++| .+|+++
T Consensus 188 ~LliGAGeMg~Lva~~L~~~~v~~~~i~ 215 (436)
T TIGR01035 188 VLLIGAGEMGELVAKHLREKGVGKVLIA 215 (436)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8998274579999999964895289885
No 494
>PRK07825 short chain dehydrogenase; Provisional
Probab=60.17 E-value=11 Score=16.56 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHH--HHHCCCCEEEEECCCCCCCCCHHCCCCE-EEECCCCCCCCHHHHHHHHHHHCCCC-------
Q ss_conf 8898996899999999--9988982999986898852104116534-25137899999999999899845887-------
Q gi|254781043|r 20 VVVVGAGGAGLRATLG--MAEKGFKTACITKVFPTRSHTVAAQGGI-AASLANMTPDSWQWHLYDTIKGSDWL------- 89 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~--A~e~G~~V~lieK~~~~~g~s~~A~GGi-~a~~~~~~~Ds~~~~~~Dt~~~g~~l------- 89 (611)
|++|=||..|+-.|+. .+++|++|++.+.....--.....-+.. ....+-.++++++..++.+.+.-..+
T Consensus 7 vvlITGassGIG~a~A~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~DVtd~~~v~~~~~~~~~~~G~iDiLVNNA 86 (273)
T PRK07825 7 VIAITGGARGIGLATARALAALGAKVAIGDLDEALAKESAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNA 86 (273)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 89992623399999999999879989999799999999998607855999147999999999999999709977899878
Q ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHHH
Q ss_conf -----------7999999999988999999998699813279985510014641145678765640798666542-6678
Q gi|254781043|r 90 -----------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAIL 157 (611)
Q Consensus 90 -----------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i~ 157 (611)
.+++.-+.+--+-.-.+......-=.+.+...|.+... +...+.-..-....|++-+-+ ..+.
T Consensus 87 Gi~~~~~~~e~~~e~~~~~~~vNl~g~~~~~~~~lp~M~~~~~G~IVni-----sS~ag~~~~p~~~~Y~ASK~av~g~t 161 (273)
T PRK07825 87 GIMPVGPFLDEPDRATRRILDVNVYGVILGSKLAAPRMVPRGRGHIVNV-----ASLAGKIAVPGMATYCASKHAVVGLT 161 (273)
T ss_pred CCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE-----ECHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 7789987343999999999886039999999999999997399479998-----47676477999835999999999999
Q ss_pred HHHHHHHHHCCCEE
Q ss_conf 99999987312303
Q gi|254781043|r 158 HTLYGQALKNNAEF 171 (611)
Q Consensus 158 ~~L~~~~~~~gv~i 171 (611)
++|..+....||++
T Consensus 162 ~sLa~El~~~gIrV 175 (273)
T PRK07825 162 DALRLELRPTGVHV 175 (273)
T ss_pred HHHHHHHCCCCCEE
T ss_conf 99999852309599
No 495
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.93 E-value=11 Score=16.53 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88989-96899999999998898299998689
Q gi|254781043|r 20 VVVVG-AGGAGLRATLGMAEKGFKTACITKVF 50 (611)
Q Consensus 20 VlVIG-~G~AGl~AAi~A~e~G~~V~lieK~~ 50 (611)
+||.| ++.=|...|..++++|++|++..+..
T Consensus 8 ~lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~ 39 (238)
T PRK05786 8 VLIVGVSPGLGYAVAYFALREGASVYAFARSE 39 (238)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99928987899999999998799999996988
No 496
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=59.90 E-value=11 Score=16.53 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEECEEEECCCHH-HHHHHHHHHHCCCCEEEEEC
Q ss_conf 0534413323105889899689-99999999988982999986
Q gi|254781043|r 7 LKSSYTYVDHSYDVVVVGAGGA-GLRATLGMAEKGFKTACITK 48 (611)
Q Consensus 7 ~~~~~~~~d~~~DVlVIG~G~A-Gl~AAi~A~e~G~~V~lieK 48 (611)
|+..+..-.+ =+||-|++.. |...|...+++|++|++++.
T Consensus 2 m~~lf~L~gK--valVTGas~GIG~aia~~la~~Ga~V~i~~~ 42 (278)
T PRK08277 2 MNNLFSLKGK--VAVITGGGGVLGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CCCCCCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 4006388999--8999586748999999999987998999979
No 497
>PRK02947 hypothetical protein; Provisional
Probab=59.45 E-value=11 Score=16.48 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=0.0
Q ss_pred CEEEE----CCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 58898----996899999999998898299998
Q gi|254781043|r 19 DVVVV----GAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 19 DVlVI----G~G~AGl~AAi~A~e~G~~V~lie 47 (611)
||+|| |--.+-.-+|+.|+++|++|+.|+
T Consensus 109 Dvlii~SnSG~N~~pVE~A~~ak~~G~~VIaiT 141 (247)
T PRK02947 109 DVLIIVSNSGRNAVPIEMALEAKERGAKVIAVT 141 (247)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 889999678777689999999998699699996
No 498
>KOG2304 consensus
Probab=59.42 E-value=9.8 Score=16.84 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898996899999999998898299998
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACIT 47 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lie 47 (611)
|-|||+|.-|.--|--++..|.+|.|++
T Consensus 14 V~ivGaG~MGSGIAQv~a~sg~~V~l~d 41 (298)
T KOG2304 14 VAIVGAGQMGSGIAQVAATSGLNVWLVD 41 (298)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 4787566432039999885199469854
No 499
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=59.33 E-value=11 Score=16.47 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=0.0
Q ss_pred EEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf 898996899999999998898-299998689
Q gi|254781043|r 21 VVVGAGGAGLRATLGMAEKGF-KTACITKVF 50 (611)
Q Consensus 21 lVIG~G~AGl~AAi~A~e~G~-~V~lieK~~ 50 (611)
||||+|.+.-.|-..+++.|. ++.||.+.+
T Consensus 134 lviGaGGtsrAA~yaL~sLG~~~I~~inR~~ 164 (291)
T TIGR01809 134 LVIGAGGTSRAAVYALASLGVKDIYVINRSK 164 (291)
T ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 8883872148999999866997069973586
No 500
>PRK08628 short chain dehydrogenase; Provisional
Probab=59.28 E-value=11 Score=16.46 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEE--CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC----
Q ss_conf 8898--99689999999999889829999868988521----0411653425137899999999999899845887----
Q gi|254781043|r 20 VVVV--GAGGAGLRATLGMAEKGFKTACITKVFPTRSH----TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWL---- 89 (611)
Q Consensus 20 VlVI--G~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~----s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l---- 89 (611)
|+|| |++.=|...|...+++|++|++++........ .......+....+-.++++++..++.+++.-..+
T Consensus 9 valVTG~s~GIG~a~a~~la~~Ga~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~v~~~~~~~g~iDiLV 88 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVVFGRSAPDDEFAEELRALQPRAEFVQVDLQDDAQCRDAVAQTVAKFGRIDGLV 88 (258)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89992777789999999999879989998088023999999995399789999527999999999999999829988999
Q ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHH
Q ss_conf ------------7999999999988999999998699813279985510014641145678765640798666542-667
Q gi|254781043|r 90 ------------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAI 156 (611)
Q Consensus 90 ------------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i 156 (611)
...+-.....+--....-+|.+.-+|+-+...|.+... +.............|+..+.| ..+
T Consensus 89 nnAGi~~~~~~e~~~e~~~~~~~~Nl~~~~~l~~~~~p~l~~~~GsIIni-----sS~~a~~~~~~~~~Y~asKaal~~l 163 (258)
T PRK08628 89 NNAGVNDGVGLDAGRDAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNI-----SSKTALTGQGGTSGYAAAKGAQLGL 163 (258)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-----ECHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 88822788777899999999999874999999999999888549549998-----1221016799848899999999999
Q ss_pred HHHHHHHHHHCCCEE
Q ss_conf 899999987312303
Q gi|254781043|r 157 LHTLYGQALKNNAEF 171 (611)
Q Consensus 157 ~~~L~~~~~~~gv~i 171 (611)
.+.|..+..+.||++
T Consensus 164 tr~lA~e~~~~gIRv 178 (258)
T PRK08628 164 TREWAVALAKDGVRV 178 (258)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999964119599
Done!