Query         gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 611
No_of_seqs    221 out of 3589
Neff          7.4 
Searched_HMMs 39220
Date          Mon May 30 04:58:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781043.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01812 sdhA_frdA_Gneg succi 100.0       0       0 1455.5  35.9  586   19-611     1-636 (636)
  2 TIGR01816 sdhA_forward succina 100.0       0       0 1418.2  33.8  590   16-611     1-615 (615)
  3 PRK09078 sdhA succinate dehydr 100.0       0       0 1236.7  53.6  598    6-611     1-598 (598)
  4 PTZ00139 succinate dehydrogena 100.0       0       0 1227.1  51.5  600    5-611    22-622 (622)
  5 PRK07057 sdhA succinate dehydr 100.0       0       0 1164.8  50.8  584   13-611     8-591 (591)
  6 PRK08205 sdhA succinate dehydr 100.0       0       0 1157.3  49.7  577   14-611     2-583 (583)
  7 PRK08626 fumarate reductase fl 100.0       0       0 1159.2  47.9  565   17-611     5-598 (657)
  8 PRK08958 sdhA succinate dehydr 100.0       0       0 1153.1  51.6  579   16-611     6-588 (588)
  9 PRK05675 sdhA succinate dehydr 100.0       0       0 1148.9  47.0  568   30-611     1-570 (570)
 10 PRK07573 sdhA succinate dehydr 100.0       0       0 1149.2  46.4  577    6-611    22-637 (638)
 11 PRK09231 fumarate reductase fl 100.0       0       0 1124.4  51.1  560   16-611     3-580 (582)
 12 PRK05945 sdhA succinate dehydr 100.0       0       0 1124.3  49.3  565   17-611     3-575 (575)
 13 PRK06452 sdhA succinate dehydr 100.0       0       0 1116.1  52.0  561   15-611     3-566 (566)
 14 PRK06069 sdhA succinate dehydr 100.0       0       0 1106.4  51.6  567   16-611     4-582 (582)
 15 PRK08641 sdhA succinate dehydr 100.0       0       0 1111.7  47.3  561   17-611     3-579 (589)
 16 TIGR01176 fum_red_Fp fumarate  100.0       0       0 1093.0  35.7  559   17-611     3-584 (585)
 17 PRK07803 sdhA succinate dehydr 100.0       0       0 1067.4  48.6  552   12-591     3-605 (631)
 18 PRK06263 sdhA succinate dehydr 100.0       0       0 1025.9  47.4  524   16-578     6-534 (539)
 19 PRK07395 L-aspartate oxidase;  100.0       0       0  999.6  43.9  532   12-590     5-554 (556)
 20 PRK09077 L-aspartate oxidase;  100.0       0       0 1001.0  42.7  514   14-574     5-531 (535)
 21 TIGR00551 nadB L-aspartate oxi 100.0       0       0 1000.0  36.7  510   16-556     1-546 (546)
 22 COG1053 SdhA Succinate dehydro 100.0       0       0  991.4  40.9  553   13-592     2-561 (562)
 23 PRK07512 L-aspartate oxidase;  100.0       0       0  966.3  41.2  490   13-579     5-500 (507)
 24 PRK07804 L-aspartate oxidase;  100.0       0       0  955.0  44.6  521    7-591     5-531 (533)
 25 PRK08071 L-aspartate oxidase;  100.0       0       0  954.0  40.5  498   17-577     3-504 (510)
 26 COG0029 NadB Aspartate oxidase 100.0       0       0  949.6  36.5  498   19-576     9-511 (518)
 27 KOG2403 consensus              100.0       0       0  942.0  29.1  598    7-611    45-642 (642)
 28 PRK08275 putative oxidoreducta 100.0       0       0  918.0  47.5  526   12-593     4-554 (554)
 29 TIGR01811 sdhA_Bsu succinate d 100.0       0       0  933.5  32.8  564   20-611     1-620 (620)
 30 PRK06854 adenylylsulfate reduc 100.0       0       0  888.2  42.4  544    9-591     3-604 (610)
 31 PRK08401 L-aspartate oxidase;  100.0       0       0  886.7  35.8  456   18-574     2-458 (464)
 32 PRK13800 putative oxidoreducta 100.0       0       0  875.2  40.3  546   13-610     9-576 (894)
 33 PRK06175 L-aspartate oxidase;  100.0       0       0  801.7  32.1  425   14-478     1-431 (433)
 34 TIGR02061 aprA adenylylsulfate 100.0       0       0  613.5  24.5  524   19-590     1-647 (651)
 35 PTZ00306 NADH-dependent fumara 100.0       0       0  602.5  31.3  395   18-438   410-907 (1167)
 36 TIGR01813 flavo_cyto_c flavocy 100.0       0       0  609.6  22.3  383   19-427     1-487 (487)
 37 PRK06481 fumarate reductase fl 100.0       0       0  539.4  29.6  399   14-436    57-505 (506)
 38 pfam00890 FAD_binding_2 FAD bi 100.0       0       0  513.8  33.3  381   19-415     1-401 (401)
 39 PRK07121 hypothetical protein; 100.0       0       0  506.8  32.5  404   13-433    16-490 (491)
 40 PRK08274 tricarballylate dehyd 100.0       0       0  488.4  25.4  389   16-433     3-456 (456)
 41 PRK12844 3-ketosteroid-delta-1 100.0       0       0  464.7  32.0  411   15-434     4-550 (552)
 42 PRK12835 3-ketosteroid-delta-1 100.0       0       0  453.2  33.2  423    7-438     1-574 (584)
 43 PRK12834 putative FAD-binding  100.0       0       0  456.6  28.4  404   16-433     1-549 (549)
 44 PRK12845 3-ketosteroid-delta-1 100.0       0       0  441.3  32.7  420    3-433     2-565 (566)
 45 PRK12839 hypothetical protein; 100.0       0       0  439.2  33.0  416   10-433     2-570 (574)
 46 PRK12843 putative FAD-binding  100.0       0       0  437.4  32.7  414   15-437    12-574 (576)
 47 PRK12837 3-ketosteroid-delta-1 100.0       0       0  437.3  32.0  401   14-431     6-512 (515)
 48 PRK07843 3-ketosteroid-delta-1 100.0       0       0  436.2  32.2  412   14-432     2-559 (560)
 49 PRK12842 putative succinate de 100.0       0       0  433.6  33.2  412   15-434     3-564 (567)
 50 KOG2404 consensus              100.0       0       0  442.9  23.8  375   19-430    11-468 (477)
 51 PRK06134 putative FAD-binding  100.0       0       0  426.8  30.9  417   10-434     4-570 (579)
 52 pfam02910 Succ_DH_flav_C domai 100.0 4.1E-37   1E-41  261.4  14.1  127  470-611     1-127 (127)
 53 TIGR02485 CobZ_N-term precorri 100.0 2.6E-33 6.6E-38  236.5  18.1  382   18-434     2-466 (467)
 54 pfam03486 HI0933_like HI0933-l 100.0 4.1E-28   1E-32  202.5  26.0  343   18-427     1-404 (405)
 55 COG3573 Predicted oxidoreducta 100.0 1.2E-28 3.2E-33  205.9  20.5  399   16-431     4-550 (552)
 56 COG2081 Predicted flavoprotein 100.0   3E-26 7.6E-31  190.3  22.3  353   16-433     2-407 (408)
 57 TIGR03140 AhpF alkyl hydropero  99.7 2.1E-15 5.4E-20  119.3  15.3  113   17-218   212-324 (515)
 58 TIGR03143 AhpF_homolog putativ  99.7 1.9E-15 4.7E-20  119.7  13.0  115   14-218     1-115 (555)
 59 PRK11101 glpA sn-glycerol-3-ph  99.7   3E-15 7.6E-20  118.4  13.5  192   16-217     4-210 (545)
 60 PRK10157 putative oxidoreducta  99.7 1.1E-15 2.9E-20  121.1  10.9  162   14-216     2-163 (428)
 61 PRK06370 mercuric reductase; V  99.6   6E-15 1.5E-19  116.3  10.4   37   15-51      2-38  (459)
 62 PRK05329 anaerobic glycerol-3-  99.6 3.3E-13 8.3E-18  105.0  19.0   99   16-121     1-107 (425)
 63 TIGR03378 glycerol3P_GlpB glyc  99.6 3.6E-13 9.1E-18  104.8  19.1   96   18-120     1-104 (419)
 64 PRK12266 glpD glycerol-3-phosp  99.6   6E-14 1.5E-18  109.8  14.5  191   13-217     2-216 (503)
 65 pfam01266 DAO FAD dependent ox  99.6 1.1E-13 2.8E-18  108.1  15.7  182   19-219     1-204 (309)
 66 PRK10015 hypothetical protein;  99.6 7.7E-15   2E-19  115.6   9.7  163   14-217     2-164 (429)
 67 PRK07845 flavoprotein disulfid  99.6 9.9E-14 2.5E-18  108.4  14.8  150   18-218     2-153 (467)
 68 PRK13369 glycerol-3-phosphate   99.6 9.3E-14 2.4E-18  108.6  14.0  192   16-217     5-216 (503)
 69 TIGR03329 Phn_aa_oxid putative  99.6   2E-13 5.1E-18  106.4  14.9  182   14-217    21-237 (460)
 70 PRK04176 ribulose-1,5-biphosph  99.6   1E-13 2.6E-18  108.3  13.2  140   17-215    25-171 (257)
 71 KOG0042 consensus               99.6   3E-14 7.6E-19  111.8   9.8  191   15-217    65-287 (680)
 72 PRK11259 solA N-methyltryptoph  99.5 2.3E-13 5.9E-18  106.0  13.5  182   16-217     2-204 (377)
 73 PRK05976 dihydrolipoamide dehy  99.5 3.3E-14 8.4E-19  111.5   8.9   39   14-52      1-39  (464)
 74 PRK06416 dihydrolipoamide dehy  99.5 7.2E-14 1.8E-18  109.3  10.3   37   15-51      2-38  (462)
 75 TIGR01372 soxA sarcosine oxida  99.5 1.5E-13 3.8E-18  107.2  11.9   52    9-60    168-219 (1026)
 76 KOG2403 consensus               99.5 4.2E-14 1.1E-18  110.8   8.7  411    4-433    45-474 (642)
 77 pfam01946 Thi4 Thi4 family. Th  99.5 3.4E-13 8.6E-18  104.9  13.3  140   17-215    17-162 (229)
 78 COG0578 GlpA Glycerol-3-phosph  99.5 2.9E-13 7.3E-18  105.4  12.4  186   16-218    11-226 (532)
 79 PRK06292 dihydrolipoamide dehy  99.5 1.1E-13 2.8E-18  108.1  10.0   35   17-51      3-37  (460)
 80 PRK06116 glutathione reductase  99.5 2.4E-14 6.2E-19  112.4   6.6   38   14-51      1-38  (450)
 81 PRK06327 dihydrolipoamide dehy  99.5 1.9E-13 4.8E-18  106.6  10.8   39   14-52      1-39  (475)
 82 PRK12409 D-amino acid dehydrog  99.5 1.9E-12 4.9E-17   99.9  15.6  197   19-218     3-259 (410)
 83 COG1249 Lpd Pyruvate/2-oxoglut  99.5 2.4E-13 6.2E-18  105.8   8.6   39   14-52      1-39  (454)
 84 PRK07818 dihydrolipoamide dehy  99.5 7.6E-13 1.9E-17  102.6  10.7   38   14-51      1-38  (467)
 85 PRK00711 D-amino acid dehydrog  99.4 2.6E-12 6.6E-17   99.1  12.0  189   20-218     3-258 (416)
 86 PRK13748 putative mercuric red  99.4   2E-12 5.1E-17   99.9  10.8   39   14-52     95-133 (561)
 87 COG0492 TrxB Thioredoxin reduc  99.4 6.2E-11 1.6E-15   90.1  18.2  114   16-218     2-116 (305)
 88 COG0644 FixC Dehydrogenases (f  99.4 1.3E-13 3.4E-18  107.5   4.0  149   16-215     2-150 (396)
 89 COG1635 THI4 Ribulose 1,5-bisp  99.4 3.3E-12 8.4E-17   98.5  11.0  140   17-215    30-176 (262)
 90 PRK05192 tRNA uridine 5-carbox  99.4 5.7E-12 1.4E-16   96.9  10.1  151   14-216     3-158 (621)
 91 PRK06912 acoL dihydrolipoamide  99.4 2.6E-12 6.6E-17   99.1   7.5   34   18-51      1-34  (458)
 92 PRK12770 putative glutamate sy  99.3 2.6E-11 6.7E-16   92.5  12.0   37   18-54     18-54  (350)
 93 PRK02106 choline dehydrogenase  99.3 1.7E-10 4.2E-15   87.3  15.2   54  161-217   203-258 (555)
 94 TIGR02053 MerA mercuric reduct  99.3 3.2E-13 8.1E-18  105.1   1.1  317   18-434     1-355 (494)
 95 TIGR02352 thiamin_ThiO glycine  99.3 5.6E-11 1.4E-15   90.4  12.4  183   20-218     1-209 (357)
 96 pfam01134 GIDA Glucose inhibit  99.3 2.6E-11 6.6E-16   92.6  10.4  147   19-217     1-152 (391)
 97 PRK11728 hypothetical protein;  99.3   2E-10 5.2E-15   86.7  15.0  179   16-217     1-205 (400)
 98 TIGR03364 HpnW_proposed FAD de  99.3 2.8E-10 7.1E-15   85.8  15.7  178   18-218     1-198 (365)
 99 TIGR02032 GG-red-SF geranylger  99.3   1E-11 2.5E-16   95.3   7.8  202   18-250     1-211 (343)
100 PRK06467 dihydrolipoamide dehy  99.3 3.9E-11   1E-15   91.4  10.5  148   14-217     1-148 (472)
101 COG0579 Predicted dehydrogenas  99.3 1.7E-10 4.4E-15   87.2  13.1  189   16-217     2-211 (429)
102 PRK06185 hypothetical protein;  99.2   4E-10   1E-14   84.8  13.8  162   14-218     3-170 (409)
103 KOG2415 consensus               99.2 3.9E-11 9.9E-16   91.4   8.4  168   17-220    76-259 (621)
104 TIGR00292 TIGR00292 thiazole b  99.2 8.2E-11 2.1E-15   89.3  10.1  120    6-185    12-134 (283)
105 PTZ00052 thioredoxin reductase  99.2   2E-10 5.2E-15   86.7  11.9   40   13-52     37-76  (541)
106 COG0665 DadA Glycine/D-amino a  99.2   2E-10 5.2E-15   86.7  11.2  191   15-220     2-215 (387)
107 COG2509 Uncharacterized FAD-de  99.2 1.3E-09 3.4E-14   81.4  15.2   63  153-221   172-234 (486)
108 pfam01494 FAD_binding_3 FAD bi  99.2 4.3E-10 1.1E-14   84.6  12.4  161   17-218     1-163 (349)
109 TIGR01350 lipoamide_DH dihydro  99.2 4.8E-11 1.2E-15   90.8   7.3  143   17-219     1-149 (481)
110 PRK01747 mnmC 5-methylaminomet  99.2 3.8E-09 9.6E-14   78.4  16.7  184   18-218   257-459 (660)
111 PRK05249 soluble pyridine nucl  99.2 1.4E-10 3.6E-15   87.8   9.4   39   17-55      6-44  (465)
112 COG0445 GidA Flavin-dependent   99.2 2.6E-11 6.6E-16   92.6   4.8  151   17-216     4-157 (621)
113 PRK09564 coenzyme A disulfide   99.2 5.7E-10 1.5E-14   83.8  11.3  113   19-218     2-116 (443)
114 PRK06126 hypothetical protein;  99.1 5.1E-09 1.3E-13   77.6  15.5  167   16-217     6-188 (545)
115 PRK07364 2-octaprenyl-6-methox  99.1   5E-09 1.3E-13   77.6  15.2  163   14-218    14-181 (413)
116 PRK06183 mhpA 3-(3-hydroxyphen  99.1 2.7E-09 6.8E-14   79.4  13.8  161   16-217    11-176 (554)
117 PRK06184 hypothetical protein;  99.1 6.4E-09 1.6E-13   76.9  15.6  162   17-218     6-172 (503)
118 PRK09126 hypothetical protein;  99.1 8.4E-09 2.1E-13   76.1  15.4  155   16-220     2-170 (392)
119 COG0654 UbiH 2-polyprenyl-6-me  99.1 3.4E-09 8.8E-14   78.7  13.3  155   17-217     2-162 (387)
120 PRK07233 hypothetical protein;  99.1 1.2E-08 3.1E-13   75.1  15.2   55  154-215   197-251 (430)
121 PRK08773 2-octaprenyl-3-methyl  99.1 9.5E-09 2.4E-13   75.8  14.5  165   17-218     6-170 (392)
122 PRK08774 consensus              99.1 8.9E-09 2.3E-13   76.0  13.9  166   14-219     1-172 (402)
123 PRK06115 dihydrolipoamide dehy  99.1 1.6E-09 4.1E-14   80.9  10.1   35   17-51      3-38  (466)
124 PRK07608 hypothetical protein;  99.0 2.9E-08 7.3E-13   72.7  15.7  152   15-218     3-169 (389)
125 PRK08244 hypothetical protein;  99.0 1.9E-08   5E-13   73.8  14.8  159   16-217     1-159 (494)
126 TIGR03467 HpnE squalene-associ  99.0 1.3E-08 3.4E-13   74.8  13.8   57  153-215   207-263 (430)
127 TIGR02733 desat_CrtD C-3',4' d  99.0 1.6E-08   4E-13   74.4  13.7  192   17-212     1-289 (499)
128 PRK08020 ubiF 2-octaprenyl-3-m  99.0 2.2E-08 5.7E-13   73.4  14.2  153   15-219     3-171 (391)
129 PRK12809 putative oxidoreducta  99.0   5E-08 1.3E-12   71.1  15.9   69   19-119   312-380 (639)
130 PRK06834 hypothetical protein;  99.0 1.6E-08   4E-13   74.4  13.3  153   17-217     3-156 (488)
131 COG3075 GlpB Anaerobic glycero  99.0 1.4E-08 3.7E-13   74.6  12.9   35   16-50      1-35  (421)
132 PRK08294 phenol 2-monooxygenas  99.0 5.3E-08 1.4E-12   70.9  15.5  170   16-218    31-211 (634)
133 TIGR02730 carot_isom carotene   99.0 1.2E-08   3E-13   75.2  12.2  182   18-213     1-282 (506)
134 TIGR01424 gluta_reduc_2 glutat  99.0 3.9E-09 9.8E-14   78.4   9.5  289   17-399     2-334 (478)
135 PRK12769 putative oxidoreducta  99.0 8.3E-08 2.1E-12   69.6  16.2   69   19-119   329-397 (654)
136 PRK12831 putative oxidoreducta  99.0 8.7E-08 2.2E-12   69.5  16.2   58  368-435   405-462 (464)
137 PRK07208 hypothetical protein;  99.0 9.8E-08 2.5E-12   69.2  16.4   57  154-212   212-268 (474)
138 PRK05714 2-octaprenyl-3-methyl  99.0 3.3E-08 8.4E-13   72.3  14.0  153   16-218     1-169 (405)
139 PRK06475 salicylate hydroxylas  99.0 6.8E-08 1.7E-12   70.2  15.5  161   17-219     2-169 (400)
140 COG1233 Phytoene dehydrogenase  99.0 1.6E-08 4.1E-13   74.3  11.8   56  154-215   224-279 (487)
141 PRK08163 salicylate hydroxylas  99.0 6.7E-08 1.7E-12   70.3  15.0  160   14-218     1-167 (396)
142 PRK07190 hypothetical protein;  99.0 7.2E-08 1.8E-12   70.0  15.0  159   16-217     4-165 (480)
143 KOG4716 consensus               99.0 6.5E-08 1.6E-12   70.4  14.7   55   14-68     16-70  (503)
144 PRK12771 putative glutamate sy  99.0 7.7E-08   2E-12   69.9  14.8   68   19-118   139-206 (560)
145 PRK08132 hypothetical protein;  98.9 9.4E-08 2.4E-12   69.3  15.1  161   17-218    23-186 (549)
146 PRK11749 putative oxidoreducta  98.9 4.5E-08 1.1E-12   71.4  13.2   59  369-437   400-458 (460)
147 PRK12810 gltD glutamate syntha  98.9 1.4E-07 3.5E-12   68.2  15.5   61  368-438   411-471 (472)
148 PRK08013 hypothetical protein;  98.9 1.5E-07 3.9E-12   67.9  15.7  151   17-219     3-170 (400)
149 PRK07333 2-octaprenyl-6-methox  98.9 1.1E-07 2.7E-12   68.9  14.5  166   17-219     1-169 (403)
150 COG3634 AhpF Alkyl hydroperoxi  98.9 2.8E-08 7.2E-13   72.7  11.1  113   17-215   211-323 (520)
151 TIGR01292 TRX_reduct thioredox  98.9 3.3E-08 8.3E-13   72.3  11.4  119   18-218     1-120 (321)
152 PRK10262 thioredoxin reductase  98.9 9.4E-08 2.4E-12   69.3  13.7  113   16-217     5-117 (321)
153 PRK07045 putative monooxygenas  98.9   1E-07 2.6E-12   69.1  13.8  157   16-218     4-166 (388)
154 PRK07494 2-octaprenyl-6-methox  98.9 1.2E-07 3.1E-12   68.6  14.0  157   16-219     4-167 (386)
155 PRK12778 putative bifunctional  98.9 4.2E-07 1.1E-11   65.0  16.3   70   18-119   440-509 (760)
156 KOG1298 consensus               98.9 2.1E-08 5.5E-13   73.5   9.6  189   14-248    42-235 (509)
157 PRK08850 2-octaprenyl-6-methox  98.9 2.2E-07 5.7E-12   66.8  14.8  161   14-217     1-168 (405)
158 PRK08243 4-hydroxybenzoate 3-m  98.9 4.5E-07 1.2E-11   64.8  16.3  158   16-217     1-163 (392)
159 TIGR01373 soxB sarcosine oxida  98.9 5.2E-09 1.3E-13   77.5   6.2  189   15-244    28-251 (407)
160 PRK11445 putative oxidoreducta  98.9 2.4E-07 6.2E-12   66.6  14.4  157   17-219     1-159 (348)
161 PRK07538 hypothetical protein;  98.8 3.3E-07 8.3E-12   65.8  14.8  158   19-218     2-166 (413)
162 pfam07992 Pyr_redox_2 Pyridine  98.8 5.7E-08 1.5E-12   70.7  10.8  108   19-218     1-108 (277)
163 PRK06996 hypothetical protein;  98.8 2.7E-07 6.9E-12   66.3  14.3  164    9-217     3-174 (397)
164 KOG2311 consensus               98.8 1.6E-08 4.2E-13   74.2   7.6  161   15-232    26-204 (679)
165 PRK13984 putative oxidoreducta  98.8 4.4E-07 1.1E-11   64.9  14.8   69   19-119   285-353 (604)
166 PRK09754 phenylpropionate diox  98.8 1.5E-08 3.8E-13   74.5   7.2   34   17-50      3-38  (400)
167 TIGR01790 carotene-cycl lycope  98.8 2.6E-07 6.7E-12   66.4  13.5  311   19-437     1-324 (419)
168 PRK08849 2-octaprenyl-3-methyl  98.8 3.5E-07   9E-12   65.5  13.7  151   17-218     3-168 (384)
169 PRK07846 mycothione/glutathion  98.8 8.5E-08 2.2E-12   69.6  10.2   33   17-51      1-33  (453)
170 COG2303 BetA Choline dehydroge  98.8   6E-07 1.5E-11   64.0  14.3   54  164-218   213-267 (542)
171 TIGR01438 TGR thioredoxin and   98.8   3E-07 7.7E-12   66.0  12.6  146   17-215     2-160 (513)
172 PRK06847 hypothetical protein;  98.7 6.3E-07 1.6E-11   63.9  13.6  155   19-218     6-164 (375)
173 PRK05732 2-octaprenyl-6-methox  98.7 1.3E-06 3.2E-11   61.9  15.0  162   17-219     3-171 (395)
174 TIGR03452 mycothione_red mycot  98.7 2.4E-07   6E-12   66.7  11.2   34   16-51      1-34  (452)
175 TIGR01316 gltA glutamate synth  98.7 4.9E-07 1.3E-11   64.6  12.6   69   17-117   142-210 (462)
176 TIGR01988 Ubi-OHases Ubiquinon  98.7 4.9E-07 1.3E-11   64.6  12.5  151   19-217     1-190 (445)
177 PRK08010 pyridine nucleotide-d  98.7 2.7E-08   7E-13   72.8   5.6   42   17-58      3-44  (441)
178 PRK07251 pyridine nucleotide-d  98.7 2.4E-08 6.1E-13   73.2   5.2   44   16-59      2-45  (438)
179 TIGR03377 glycerol3P_GlpA glyc  98.7 1.2E-07 3.2E-12   68.5   8.7   64  153-217   127-190 (516)
180 PRK13512 coenzyme A disulfide   98.7 2.7E-08   7E-13   72.8   5.3   50  165-218    69-118 (438)
181 KOG1335 consensus               98.7 5.4E-07 1.4E-11   64.3  11.9  155    8-220    30-188 (506)
182 PRK08948 consensus              98.7 1.4E-06 3.4E-11   61.7  13.8  143   18-218     1-167 (392)
183 PTZ00153 lipoamide dehydrogena  98.7 1.2E-07 3.1E-12   68.5   8.5   40   12-51    118-159 (673)
184 PRK12814 putative NADPH-depend  98.7 2.6E-06 6.6E-11   59.9  15.1   60  368-437   445-504 (652)
185 PRK12775 putative trifunctiona  98.6 3.6E-06 9.2E-11   58.9  14.8   63  366-438   695-757 (993)
186 PRK06617 2-octaprenyl-6-methox  98.5 3.6E-06 9.1E-11   59.0  12.8  156   18-219     2-162 (374)
187 TIGR01318 gltD_gamma_fam gluta  98.5 3.3E-06 8.4E-11   59.2  12.5  317    4-433   133-478 (480)
188 KOG2820 consensus               98.5 1.7E-06 4.5E-11   61.0  11.0  185   14-223     4-218 (399)
189 TIGR01421 gluta_reduc_1 glutat  98.5 3.5E-07 8.9E-12   65.6   7.2  300   16-402     1-329 (475)
190 TIGR03315 Se_ygfK putative sel  98.5 1.4E-05 3.7E-10   55.0  14.7   68   19-118   539-606 (1012)
191 TIGR01377 soxA_mon sarcosine o  98.5 1.8E-05 4.7E-10   54.3  15.0  174   18-217     1-207 (401)
192 PRK13339 malate:quinone oxidor  98.5 3.4E-06 8.6E-11   59.1  10.9  192   16-217     5-247 (497)
193 pfam06039 Mqo Malate:quinone o  98.5 2.8E-06 7.1E-11   59.7  10.3  195   15-217     2-245 (489)
194 PRK07236 hypothetical protein;  98.4 8.9E-06 2.3E-10   56.4  12.7   33   18-50      7-39  (386)
195 PRK09853 putative selenate red  98.4 1.3E-05 3.4E-10   55.2  13.4   69   19-119   552-620 (1032)
196 COG2072 TrkA Predicted flavopr  98.4 9.3E-06 2.4E-10   56.2  12.5   37   16-52      7-44  (443)
197 PRK07588 hypothetical protein;  98.4 1.4E-05 3.6E-10   55.1  13.3  153   19-217     2-158 (391)
198 KOG2853 consensus               98.4 7.1E-06 1.8E-10   57.0  11.3  193   11-217    80-320 (509)
199 KOG1238 consensus               98.4 6.6E-05 1.7E-09   50.7  15.3   51  166-217   266-318 (623)
200 PRK06753 hypothetical protein;  98.3 4.2E-05 1.1E-09   52.0  14.1   35   19-53      2-36  (373)
201 PRK05868 hypothetical protein;  98.3 5.1E-05 1.3E-09   51.4  14.0  159   19-218     3-161 (372)
202 pfam01593 Amino_oxidase Flavin  98.3 3.4E-05 8.7E-10   52.6  12.4   52  158-216   208-259 (444)
203 KOG0405 consensus               98.3 6.3E-06 1.6E-10   57.4   8.4  147   15-217    18-165 (478)
204 COG1148 HdrA Heterodisulfide r  98.2 2.2E-06 5.7E-11   60.3   4.7   42   14-55    121-162 (622)
205 KOG4254 consensus               98.2 8.3E-06 2.1E-10   56.6   7.2   56  155-216   265-320 (561)
206 pfam04820 Trp_halogenase Trypt  98.1 0.00043 1.1E-08   45.3  15.7   55  155-215   158-212 (457)
207 KOG2844 consensus               98.1 0.00019 4.9E-09   47.6  13.7  186   16-218    38-244 (856)
208 pfam00743 FMO-like Flavin-bind  98.1 1.8E-05 4.5E-10   54.4   8.0  146   19-220     3-153 (532)
209 TIGR00031 UDP-GALP_mutase UDP-  98.1 4.4E-06 1.1E-10   58.3   4.9  242   17-291     1-339 (390)
210 TIGR03197 MnmC_Cterm tRNA U-34  98.0 0.00035 8.9E-09   45.9  13.2   58  153-218   134-191 (381)
211 TIGR02023 BchP-ChlP geranylger  98.0   5E-06 1.3E-10   58.0   3.7  348   18-492     1-364 (408)
212 PRK08255 salicylyl-CoA 5-hydro  98.0  0.0001 2.6E-09   49.4  10.3  133   19-195     2-142 (770)
213 PRK11883 protoporphyrinogen ox  98.0 1.1E-05 2.9E-10   55.6   5.3   37   19-55      2-40  (452)
214 KOG0029 consensus               98.0 1.1E-05 2.9E-10   55.7   5.1   42   13-54     11-52  (501)
215 PRK05257 malate:quinone oxidor  98.0 0.00051 1.3E-08   44.8  13.3  198   14-217     6-250 (499)
216 TIGR02734 crtI_fam phytoene de  98.0 3.5E-05 8.9E-10   52.5   7.2   56  154-214   227-290 (526)
217 KOG2960 consensus               97.9 1.1E-05 2.7E-10   55.9   4.2  118   17-192    76-200 (328)
218 TIGR01984 UbiH 2-polyprenyl-6-  97.9 0.00061 1.6E-08   44.4  13.2  165   19-216     1-193 (425)
219 PRK05335 tRNA (uracil-5-)-meth  97.9 2.2E-05 5.6E-10   53.8   4.7   57  389-455   331-387 (434)
220 COG0562 Glf UDP-galactopyranos  97.8   3E-05 7.7E-10   52.9   5.1   49   17-65      1-52  (374)
221 TIGR00275 TIGR00275 conserved   97.8 0.00015 3.8E-09   48.4   8.6  187   21-246     1-190 (411)
222 KOG2614 consensus               97.8 4.1E-05   1E-09   52.0   5.4   39   17-55      2-40  (420)
223 TIGR01317 GOGAT_sm_gam glutama  97.8 0.00015 3.9E-09   48.3   8.3  176   19-249   153-340 (517)
224 TIGR01810 betA choline dehydro  97.8 0.00013 3.3E-09   48.7   7.7   55  160-217   205-262 (540)
225 pfam06100 Strep_67kDa_ant Stre  97.8  0.0016 4.1E-08   41.6  12.9   60  155-215   208-271 (500)
226 COG3380 Predicted NAD/FAD-depe  97.7 6.2E-05 1.6E-09   50.9   5.0  156   19-217     3-160 (331)
227 PRK12779 putative bifunctional  97.7 0.00029 7.3E-09   46.5   7.9   69   19-119   308-376 (944)
228 PRK09897 hypothetical protein;  97.7  0.0014 3.7E-08   41.9  11.3  164   19-225     3-181 (535)
229 PRK13977 myosin-cross-reactive  97.7   0.002 5.1E-08   41.0  12.0   60  155-216   227-291 (577)
230 COG1232 HemY Protoporphyrinoge  97.6 8.6E-05 2.2E-09   49.9   5.0   36   19-54      2-39  (444)
231 COG3349 Uncharacterized conser  97.6 8.4E-05 2.1E-09   50.0   4.9   36   19-54      2-37  (485)
232 TIGR03219 salicylate_mono sali  97.6 9.3E-05 2.4E-09   49.7   5.1   35   19-53      2-37  (414)
233 COG1231 Monoamine oxidase [Ami  97.6 8.9E-05 2.3E-09   49.8   4.7   45   15-59      5-51  (450)
234 COG4529 Uncharacterized protei  97.6  0.0012 3.1E-08   42.4  10.2   39   18-56      2-43  (474)
235 KOG0404 consensus               97.6 0.00033 8.4E-09   46.1   7.3  293   14-434     5-319 (322)
236 pfam05834 Lycopene_cycl Lycope  97.6 0.00012 3.1E-09   49.0   4.9   33   19-51      1-35  (374)
237 KOG2665 consensus               97.5 0.00091 2.3E-08   43.2   8.6  180   13-215    44-255 (453)
238 KOG1399 consensus               97.5 0.00016 4.1E-09   48.2   4.8  146   17-217     6-153 (448)
239 PRK04965 nitric oxide reductas  97.5  0.0037 9.4E-08   39.2  11.2   32   19-50      4-37  (378)
240 TIGR01320 mal_quin_oxido malat  97.4  0.0011 2.8E-08   42.7   8.3  191   18-217     1-242 (487)
241 PRK12416 protoporphyrinogen ox  97.4 0.00029 7.5E-09   46.4   5.2   36   19-54      3-44  (466)
242 PRK09754 phenylpropionate diox  97.3  0.0031 7.8E-08   39.8   9.7   47  164-219    68-114 (400)
243 PRK07818 dihydrolipoamide dehy  97.3   0.009 2.3E-07   36.7  11.6   47  164-218   102-148 (467)
244 PRK05976 dihydrolipoamide dehy  97.3   0.014 3.5E-07   35.5  12.3   46  164-217   105-150 (464)
245 pfam00996 GDI GDP dissociation  97.3  0.0005 1.3E-08   44.9   4.8   42   14-55      1-42  (439)
246 TIGR00137 gid gid protein; Int  97.2 0.00048 1.2E-08   45.0   3.9   29   19-47      2-30  (444)
247 PRK09564 coenzyme A disulfide   97.1   0.013 3.4E-07   35.6  11.3   51  368-431   261-315 (443)
248 KOG0685 consensus               97.1 0.00084 2.1E-08   43.4   5.0   51    4-54      3-59  (498)
249 PRK12775 putative trifunctiona  97.1 0.00038 9.6E-09   45.7   2.9   55  162-216   619-687 (993)
250 TIGR00136 gidA glucose-inhibit  97.1  0.0011 2.9E-08   42.6   5.3   33   18-50      1-33  (630)
251 PRK06416 dihydrolipoamide dehy  97.1   0.021 5.5E-07   34.2  11.8   49  161-218    99-147 (462)
252 PRK06115 dihydrolipoamide dehy  97.1   0.022 5.6E-07   34.2  11.7   46  164-217   103-148 (466)
253 KOG2852 consensus               97.1  0.0038 9.7E-08   39.1   7.8  174   18-220    11-211 (380)
254 TIGR01423 trypano_reduc trypan  97.1  0.0051 1.3E-07   38.3   8.4  208   16-247     2-229 (486)
255 PRK06116 glutathione reductase  97.0   0.017 4.3E-07   34.9  10.9   43  163-218   102-144 (450)
256 TIGR01789 lycopene_cycl lycope  97.0  0.0012   3E-08   42.5   4.6  280   19-419     1-290 (392)
257 TIGR01989 COQ6 Ubiquinone bios  97.0 0.00094 2.4E-08   43.1   4.0   37   18-54      1-43  (481)
258 PRK06370 mercuric reductase; V  96.9   0.021 5.4E-07   34.3  10.7   53  368-431   280-332 (459)
259 TIGR03140 AhpF alkyl hydropero  96.9   0.028 7.2E-07   33.5  11.3   65  361-435   450-514 (515)
260 PRK10262 thioredoxin reductase  96.9  0.0007 1.8E-08   44.0   2.9   47  384-438   273-319 (321)
261 PRK06327 dihydrolipoamide dehy  96.8   0.038 9.7E-07   32.6  11.6   53  368-431   294-346 (475)
262 PRK12810 gltD glutamate syntha  96.8 0.00067 1.7E-08   44.1   2.3   37   18-54    144-180 (472)
263 PRK06292 dihydrolipoamide dehy  96.8   0.042 1.1E-06   32.3  11.6   53  368-431   278-330 (460)
264 PRK05249 soluble pyridine nucl  96.7   0.037 9.4E-07   32.7  10.5   50  160-217   101-150 (465)
265 PRK11749 putative oxidoreducta  96.6  0.0013 3.3E-08   42.2   2.6   36   19-54    142-177 (460)
266 PRK12831 putative oxidoreducta  96.6  0.0013 3.4E-08   42.2   2.4   36   19-54    142-177 (464)
267 PRK12809 putative oxidoreducta  96.6  0.0016 4.1E-08   41.6   2.6   60  368-436   576-637 (639)
268 TIGR02374 nitri_red_nirB nitri  96.5  0.0075 1.9E-07   37.2   5.9   31   20-50      1-35  (813)
269 PRK12769 putative oxidoreducta  96.5  0.0015 3.9E-08   41.7   2.3   58  368-434   593-652 (654)
270 PRK06912 acoL dihydrolipoamide  96.5   0.066 1.7E-06   31.1  10.9   44  368-430   285-328 (458)
271 PRK12814 putative NADPH-depend  96.5  0.0022 5.5E-08   40.8   2.8   36   19-54    195-230 (652)
272 TIGR01350 lipoamide_DH dihydro  96.4   0.071 1.8E-06   30.8  10.8   47  368-434   301-348 (481)
273 pfam00732 GMC_oxred_N GMC oxid  96.4  0.0067 1.7E-07   37.6   4.9   56  162-217   135-192 (218)
274 PRK07845 flavoprotein disulfid  96.4   0.079   2E-06   30.6  10.6   53  368-431   285-337 (467)
275 TIGR01292 TRX_reduct thioredox  96.3  0.0085 2.2E-07   36.9   5.1   38  385-433   280-321 (321)
276 TIGR01316 gltA glutamate synth  96.3  0.0026 6.6E-08   40.2   2.3   55  368-433   407-462 (462)
277 TIGR02360 pbenz_hydroxyl 4-hyd  96.2    0.09 2.3E-06   30.2  14.0  167   16-223     1-171 (393)
278 PRK09288 purT phosphoribosylgl  96.2   0.025 6.4E-07   33.8   7.3   34   17-50     12-45  (395)
279 TIGR03315 Se_ygfK putative sel  96.2  0.0026 6.5E-08   40.3   2.2   55  368-432   784-838 (1012)
280 KOG1276 consensus               96.2  0.0077   2E-07   37.2   4.6   39   17-55     11-51  (491)
281 PRK12778 putative bifunctional  96.2  0.0036 9.2E-08   39.3   2.5   16  157-172   192-207 (760)
282 TIGR03169 Nterm_to_SelD pyridi  96.1  0.0074 1.9E-07   37.3   3.9   32   19-50      1-35  (364)
283 COG2907 Predicted NAD/FAD-bind  96.0  0.0067 1.7E-07   37.6   3.5   39   18-57      9-47  (447)
284 PTZ00318 NADH dehydrogenase; P  95.9  0.0091 2.3E-07   36.7   3.7   32   19-50     12-43  (514)
285 COG0446 HcaD Uncharacterized N  95.8   0.019   5E-07   34.5   5.0   30   20-49      1-32  (415)
286 PRK12771 putative glutamate sy  95.8  0.0076 1.9E-07   37.2   2.9   47  382-437   397-443 (560)
287 TIGR03143 AhpF_homolog putativ  95.8    0.15 3.7E-06   28.8  11.6   59  368-436   253-311 (555)
288 COG0493 GltD NADPH-dependent g  95.7   0.011 2.7E-07   36.2   3.5   35   18-52    124-158 (457)
289 COG1206 Gid NAD(FAD)-utilizing  95.7  0.0098 2.5E-07   36.5   3.2   33   18-50      4-36  (439)
290 TIGR03385 CoA_CoA_reduc CoA-di  95.7  0.0059 1.5E-07   37.9   2.1   52  164-219    54-105 (427)
291 pfam01262 AlaDh_PNT_C Alanine   95.7   0.019 4.9E-07   34.6   4.7   33   18-50     21-53  (150)
292 PRK09853 putative selenate red  95.7  0.0069 1.8E-07   37.5   2.3   53  368-431   798-850 (1032)
293 PRK13748 putative mercuric red  95.6    0.18 4.5E-06   28.3  11.8   53  368-431   375-427 (561)
294 KOG0399 consensus               95.5    0.19 4.8E-06   28.1  14.5   33   13-48    659-699 (2142)
295 pfam00070 Pyr_redox Pyridine n  95.4   0.026 6.7E-07   33.7   4.6   31   20-50      2-32  (82)
296 TIGR02731 phytoene_desat phyto  95.4    0.19 4.9E-06   28.0  13.2  182   20-213     2-272 (454)
297 COG1252 Ndh NADH dehydrogenase  95.4   0.027   7E-07   33.5   4.6   33   18-50      4-38  (405)
298 COG2072 TrkA Predicted flavopr  95.3   0.027   7E-07   33.5   4.4   57  159-220    91-147 (443)
299 KOG1800 consensus               95.3   0.033 8.5E-07   33.0   4.7   49   19-77     22-72  (468)
300 PRK12779 putative bifunctional  95.2   0.028 7.3E-07   33.4   4.2   55  365-429   568-622 (944)
301 TIGR02374 nitri_red_nirB nitri  95.2  0.0068 1.7E-07   37.5   1.0   46  164-218    65-110 (813)
302 PTZ00188 adrenodoxin reductase  95.2   0.055 1.4E-06   31.6   5.5   42   17-58     39-81  (506)
303 PRK04965 nitric oxide reductas  95.2   0.039 9.9E-07   32.6   4.7   47  162-218    66-112 (378)
304 TIGR02028 ChlP geranylgeranyl   95.2   0.024 6.2E-07   33.9   3.7  168   20-246     3-187 (401)
305 TIGR01318 gltD_gamma_fam gluta  95.1   0.025 6.3E-07   33.8   3.6  100   54-177   104-216 (480)
306 KOG1439 consensus               95.1  0.0092 2.3E-07   36.6   1.3   41   14-54      1-41  (440)
307 TIGR02732 zeta_caro_desat caro  94.9   0.045 1.2E-06   32.1   4.5   35   20-54      2-36  (474)
308 PRK09424 pntA NAD(P) transhydr  94.9   0.039   1E-06   32.5   4.0   22  368-393   278-299 (510)
309 TIGR00692 tdh L-threonine 3-de  94.8   0.055 1.4E-06   31.6   4.6   16  321-337   233-248 (341)
310 KOG4405 consensus               94.7   0.033 8.5E-07   33.0   3.4   41   15-55      6-46  (547)
311 TIGR03385 CoA_CoA_reduc CoA-di  94.7   0.066 1.7E-06   31.0   4.8   52  367-431   248-303 (427)
312 TIGR00313 cobQ cobyric acid sy  94.4   0.023 5.9E-07   34.0   2.0   97    5-115   110-216 (502)
313 KOG2755 consensus               94.3   0.022 5.5E-07   34.2   1.6   38   20-57      2-41  (334)
314 PRK13984 putative oxidoreducta  94.2   0.022 5.7E-07   34.1   1.5   42  384-435   562-603 (604)
315 COG5044 MRS6 RAB proteins gera  94.0    0.11 2.8E-06   29.6   4.7   39   16-54      5-43  (434)
316 KOG3855 consensus               93.9    0.14 3.7E-06   28.8   5.3   34   17-50     36-73  (481)
317 PRK13512 coenzyme A disulfide   93.9    0.12 2.9E-06   29.5   4.8   34   19-52      3-38  (438)
318 TIGR01369 CPSaseII_lrg carbamo  93.9   0.089 2.3E-06   30.2   4.1   32   19-50      8-50  (1089)
319 COG3486 IucD Lysine/ornithine   93.8    0.19 4.9E-06   28.0   5.8   40   14-53      2-42  (436)
320 KOG1336 consensus               93.2   0.029 7.5E-07   33.3   0.7   44  163-215   136-179 (478)
321 PRK02006 murD UDP-N-acetylmura  92.8    0.19 4.8E-06   28.1   4.4   31   19-49      9-39  (501)
322 TIGR00292 TIGR00292 thiazole b  92.6   0.044 1.1E-06   32.2   1.0   45  386-432   237-281 (283)
323 PRK00141 murD UDP-N-acetylmura  92.4    0.26 6.6E-06   27.2   4.7   32   19-50     19-50  (476)
324 PRK07251 pyridine nucleotide-d  92.1    0.28 7.1E-06   27.0   4.5   49  162-219    84-132 (438)
325 pfam07992 Pyr_redox_2 Pyridine  92.0    0.31 7.9E-06   26.7   4.7   32  368-401   243-274 (277)
326 PRK01438 murD UDP-N-acetylmura  92.0    0.28 7.2E-06   26.9   4.5   32   19-50     16-47  (481)
327 PRK06467 dihydrolipoamide dehy  92.0    0.29 7.4E-06   26.8   4.5   39  384-431   298-336 (472)
328 PRK05562 precorrin-2 dehydroge  91.8    0.31 7.9E-06   26.6   4.4   34   16-49     23-56  (222)
329 pfam00743 FMO-like Flavin-bind  91.7    0.14 3.5E-06   29.0   2.6   44    3-48    171-214 (532)
330 TIGR03452 mycothione_red mycot  91.6    0.37 9.6E-06   26.1   4.8   38  384-430   289-326 (452)
331 PRK02472 murD UDP-N-acetylmura  91.5    0.35 8.8E-06   26.3   4.5   32   19-50     11-42  (450)
332 PRK07846 mycothione/glutathion  91.5    0.36 9.3E-06   26.2   4.6   52  368-430   274-325 (453)
333 PRK06718 precorrin-2 dehydroge  90.9    0.44 1.1E-05   25.7   4.5   32   18-49     11-42  (202)
334 PRK08010 pyridine nucleotide-d  90.8    0.51 1.3E-05   25.3   4.8   42  167-217    90-131 (441)
335 KOG3851 consensus               90.7    0.27 6.8E-06   27.1   3.2   34   16-49     38-73  (446)
336 PRK01390 murD UDP-N-acetylmura  90.6    0.51 1.3E-05   25.2   4.6   32   19-50     11-42  (457)
337 TIGR02356 adenyl_thiF thiazole  90.6    0.33 8.4E-06   26.5   3.6   37   19-55     23-60  (210)
338 PRK06719 precorrin-2 dehydroge  90.6    0.62 1.6E-05   24.7   5.0   43    7-49      1-45  (157)
339 PRK03369 murD UDP-N-acetylmura  90.5    0.48 1.2E-05   25.4   4.5   32   19-50     14-45  (487)
340 PRK03806 murD UDP-N-acetylmura  90.4    0.47 1.2E-05   25.5   4.3   30   19-48      8-37  (438)
341 TIGR00507 aroE shikimate 5-deh  90.4    0.49 1.3E-05   25.3   4.4   18  201-218   115-134 (286)
342 KOG3923 consensus               90.3    0.88 2.2E-05   23.7   5.6   44   18-61      4-54  (342)
343 COG1635 THI4 Ribulose 1,5-bisp  90.1    0.18 4.7E-06   28.1   2.0   43  388-432   216-258 (262)
344 COG3634 AhpF Alkyl hydroperoxi  89.8    0.28 7.1E-06   27.0   2.7   24  367-400   466-489 (520)
345 PRK06249 2-dehydropantoate 2-r  89.8    0.75 1.9E-05   24.1   4.9   32   19-50      7-38  (313)
346 PRK04308 murD UDP-N-acetylmura  89.8    0.58 1.5E-05   24.9   4.3   32   19-50      7-38  (445)
347 PRK04176 ribulose-1,5-biphosph  89.7    0.19 4.9E-06   28.0   1.8   45  388-434   211-255 (257)
348 PRK03803 murD UDP-N-acetylmura  89.3    0.54 1.4E-05   25.1   3.9   32   17-48      7-38  (448)
349 PRK00683 murD UDP-N-acetylmura  89.0    0.62 1.6E-05   24.7   4.0   30   19-48      5-34  (418)
350 COG0686 Ald Alanine dehydrogen  89.0     0.4   1E-05   25.9   3.0   18  233-250   183-200 (371)
351 COG1648 CysG Siroheme synthase  88.8    0.76 1.9E-05   24.1   4.4   31   19-49     14-44  (210)
352 PRK08293 3-hydroxybutyryl-CoA   88.8    0.87 2.2E-05   23.7   4.6   31   19-49      5-35  (288)
353 PRK09310 aroDE bifunctional 3-  88.7    0.79   2E-05   24.0   4.4   32  142-174   104-135 (477)
354 PRK06019 phosphoribosylaminoim  88.5    0.91 2.3E-05   23.6   4.6   32   19-50      9-40  (377)
355 pfam03721 UDPG_MGDP_dh_N UDP-g  88.5    0.87 2.2E-05   23.7   4.5   32   19-50      2-33  (185)
356 PRK01710 murD UDP-N-acetylmura  88.3    0.89 2.3E-05   23.7   4.4   32   19-50     16-47  (458)
357 PRK08229 2-dehydropantoate 2-r  88.2       1 2.7E-05   23.2   4.7   30   19-48      4-33  (341)
358 KOG1346 consensus               88.2    0.16   4E-06   28.6   0.5   56  366-434   464-521 (659)
359 pfam02737 3HCDH_N 3-hydroxyacy  88.1       1 2.6E-05   23.3   4.6   30   20-49      2-31  (180)
360 pfam02558 ApbA Ketopantoate re  87.9    0.98 2.5E-05   23.4   4.4   31   20-50      1-31  (150)
361 PRK07878 molybdopterin biosynt  87.8     1.2   3E-05   22.8   4.8   38   18-55     43-81  (392)
362 PRK12475 thiamine/molybdopteri  87.8     1.1 2.8E-05   23.1   4.6   38   18-55     25-63  (337)
363 PRK06522 2-dehydropantoate 2-r  87.8       1 2.7E-05   23.2   4.5   31   19-49      2-32  (307)
364 TIGR01421 gluta_reduc_1 glutat  87.6    0.32 8.1E-06   26.6   1.8   81  155-251   223-309 (475)
365 PRK06129 3-hydroxyacyl-CoA deh  87.5     1.1 2.9E-05   22.9   4.6   31   19-49      4-34  (308)
366 PRK07660 consensus              87.3     1.2 3.1E-05   22.8   4.6   31   19-49      5-35  (283)
367 PRK05600 thiamine biosynthesis  87.3     1.4 3.6E-05   22.3   5.0   38   18-55     42-80  (370)
368 PRK05690 molybdopterin biosynt  87.3     1.6 4.1E-05   22.0   5.2   38   18-55     33-71  (245)
369 PRK05808 3-hydroxybutyryl-CoA   87.0     1.3 3.3E-05   22.6   4.6   31   19-49      5-35  (282)
370 cd01065 NAD_bind_Shikimate_DH   87.0       1 2.6E-05   23.2   4.1   32   18-49     20-52  (155)
371 PRK07411 hypothetical protein;  86.9     1.5 3.9E-05   22.1   5.0   38   18-55     39-77  (390)
372 PRK06035 3-hydroxyacyl-CoA deh  86.9     1.3 3.3E-05   22.6   4.6   31   19-49      5-35  (291)
373 cd01487 E1_ThiF_like E1_ThiF_l  86.9     1.7 4.2E-05   21.9   5.1   35   20-54      2-37  (174)
374 PRK09260 3-hydroxybutyryl-CoA   86.9     1.3 3.3E-05   22.6   4.6   31   19-49      4-34  (289)
375 COG1748 LYS9 Saccharopine dehy  86.8     1.4 3.5E-05   22.4   4.7   32   19-50      3-35  (389)
376 PRK08644 thiamine biosynthesis  86.8     1.3 3.4E-05   22.5   4.6   39   17-55     27-66  (209)
377 PRK07688 thiamine/molybdopteri  86.8     1.3 3.3E-05   22.6   4.6   38   18-55     25-63  (339)
378 PRK05329 anaerobic glycerol-3-  86.8    0.44 1.1E-05   25.7   2.1   60  153-216   261-320 (425)
379 PRK12815 carB carbamoyl phosph  86.8     1.3 3.2E-05   22.6   4.5   32   19-50      9-51  (1068)
380 PRK08762 molybdopterin biosynt  86.7     1.5 3.8E-05   22.2   4.8   20  198-217   131-150 (379)
381 PRK05447 1-deoxy-D-xylulose 5-  86.6    0.99 2.5E-05   23.4   3.8   28   20-47      4-34  (379)
382 PRK07530 3-hydroxybutyryl-CoA   86.4     1.5 3.7E-05   22.3   4.6   31   19-49      6-36  (292)
383 PRK05294 carB carbamoyl phosph  86.3     1.4 3.7E-05   22.3   4.6   32   19-50      9-51  (1063)
384 PRK06130 3-hydroxybutyryl-CoA   86.3     1.6   4E-05   22.1   4.7   31   19-49      7-37  (310)
385 pfam02254 TrkA_N TrkA-N domain  86.2     1.2 3.1E-05   22.8   4.1   31   20-51      1-31  (115)
386 cd00757 ThiF_MoeB_HesA_family   86.0       2 5.2E-05   21.3   5.2   39   17-55     21-60  (228)
387 PRK02705 murD UDP-N-acetylmura  85.7     1.5 3.9E-05   22.1   4.4   31   20-50      3-33  (459)
388 COG0569 TrkA K+ transport syst  85.7     1.6   4E-05   22.1   4.5   32   19-50      2-33  (225)
389 PRK09117 consensus              85.7     1.7 4.3E-05   21.8   4.7   31   19-49      4-34  (282)
390 cd00755 YgdL_like Family of ac  85.6     1.6   4E-05   22.0   4.5   39   17-55     11-50  (231)
391 TIGR01137 cysta_beta cystathio  85.5    0.83 2.1E-05   23.9   3.0  171   24-242    72-295 (527)
392 PRK11064 wecC UDP-N-acetyl-D-m  85.4     1.9 4.8E-05   21.5   4.8   32   19-50      5-36  (415)
393 PRK08223 hypothetical protein;  85.3     2.1 5.2E-05   21.3   5.0   39   17-55     27-66  (287)
394 PRK12862 malic enzyme; Reviewe  85.1     1.1 2.7E-05   23.1   3.4   27   24-50     45-79  (761)
395 PRK09496 trkA potassium transp  85.0     1.8 4.6E-05   21.7   4.5   33   19-51      2-34  (455)
396 PRK00258 aroE shikimate 5-dehy  84.9     1.5 3.8E-05   22.2   4.1   10  208-217   125-134 (275)
397 PRK07819 3-hydroxybutyryl-CoA   84.9     1.9 4.8E-05   21.5   4.6   31   19-49      4-34  (284)
398 TIGR03026 NDP-sugDHase nucleot  84.8     1.8 4.5E-05   21.7   4.4   32   19-50      2-33  (411)
399 PRK07232 malic enzyme; Reviewe  84.8     1.3 3.3E-05   22.6   3.7   26   25-50     40-73  (753)
400 PRK12921 2-dehydropantoate 2-r  84.7     1.9   5E-05   21.4   4.6   31   19-49      2-32  (306)
401 PRK06463 fabG 3-ketoacyl-(acyl  84.7     2.6 6.7E-05   20.6   7.3   29   20-48      9-39  (254)
402 COG0169 AroE Shikimate 5-dehyd  84.7     2.1 5.3E-05   21.3   4.7   19  339-357   255-273 (283)
403 pfam00899 ThiF ThiF family. Th  84.5     2.6 6.6E-05   20.6   5.2   37   19-55      3-40  (134)
404 PRK05708 2-dehydropantoate 2-r  84.2     1.9 4.7E-05   21.6   4.3   30   19-48      4-33  (305)
405 pfam00670 AdoHcyase_NAD S-aden  84.1     1.2 2.9E-05   22.9   3.2   36   18-53     24-59  (162)
406 COG0771 MurD UDP-N-acetylmuram  83.2     1.7 4.3E-05   21.8   3.8   34   19-52      9-42  (448)
407 PRK06841 short chain dehydroge  83.2     3.1 7.8E-05   20.1   7.9   31   20-50     17-49  (255)
408 PRK08268 3-hydroxybutyryl-CoA   82.4     2.7 6.9E-05   20.5   4.6   32   19-50      5-36  (503)
409 PRK08328 hypothetical protein;  82.4     2.3 5.9E-05   21.0   4.2   39   17-55     27-66  (230)
410 COG0026 PurK Phosphoribosylami  82.3     3.3 8.4E-05   19.9   5.3   32   19-50      3-34  (375)
411 TIGR02355 moeB molybdopterin s  82.2     1.9 4.9E-05   21.5   3.8   38   18-55     25-63  (240)
412 PRK05597 molybdopterin biosynt  81.9     3.4 8.7E-05   19.8   5.0   38   18-55     29-67  (355)
413 PRK12550 shikimate 5-dehydroge  81.6       3 7.6E-05   20.2   4.5   17  341-357   247-263 (272)
414 PRK06057 short chain dehydroge  81.6     3.5 8.9E-05   19.8   7.0   30   20-49      9-40  (255)
415 PRK12548 shikimate 5-dehydroge  81.3     2.5 6.5E-05   20.7   4.1   12  207-218   128-139 (289)
416 PRK12549 shikimate 5-dehydroge  81.2     2.6 6.6E-05   20.6   4.1   11  207-217   129-139 (284)
417 PRK05872 short chain dehydroge  81.2     3.6 9.2E-05   19.7   5.3   31   19-49     10-42  (296)
418 cd01483 E1_enzyme_family Super  81.1     3.6 9.3E-05   19.7   5.2   37   19-55      1-38  (143)
419 TIGR00745 apbA_panE 2-dehydrop  81.1     2.8 7.1E-05   20.4   4.2   30   20-49      2-33  (332)
420 COG1004 Ugd Predicted UDP-gluc  80.7       3 7.5E-05   20.2   4.2   32   19-50      2-33  (414)
421 PRK06483 short chain dehydroge  80.7     3.8 9.6E-05   19.6   6.1   31   19-49      4-35  (236)
422 PRK08306 dipicolinate synthase  80.5     3.4 8.7E-05   19.8   4.5   30   18-47      3-32  (296)
423 PRK07066 3-hydroxybutyryl-CoA   80.3     3.5   9E-05   19.7   4.5   31   19-49      9-39  (321)
424 pfam01488 Shikimate_DH Shikima  79.9     3.6 9.2E-05   19.7   4.5   33   17-49     12-45  (134)
425 pfam01210 NAD_Gly3P_dh_N NAD-d  79.8       4  0.0001   19.4   4.9   32   19-50      2-33  (159)
426 cd01485 E1-1_like Ubiquitin ac  79.4     4.1  0.0001   19.3   5.2   39   17-55     19-58  (198)
427 PRK04690 murD UDP-N-acetylmura  79.4     3.4 8.7E-05   19.8   4.2   29   19-47     10-38  (468)
428 cd01078 NAD_bind_H4MPT_DH NADP  79.1     4.2 0.00011   19.2   4.7   31   18-48     29-60  (194)
429 cd01484 E1-2_like Ubiquitin ac  78.5     4.4 0.00011   19.1   4.7   36   20-55      2-38  (234)
430 PRK08589 short chain dehydroge  78.5     4.4 0.00011   19.1   8.0   29   20-48      9-38  (272)
431 PRK00421 murC UDP-N-acetylmura  78.1     3.6 9.2E-05   19.7   4.0   30   19-48     10-40  (459)
432 PRK12749 quinate/shikimate deh  78.1     3.8 9.7E-05   19.5   4.2   12  207-218   126-137 (288)
433 cd01492 Aos1_SUMO Ubiquitin ac  77.5     4.7 0.00012   18.9   4.8   39   17-55     21-60  (197)
434 COG4716 Myosin-crossreactive a  77.1     1.1 2.7E-05   23.2   1.1   61  155-216   228-290 (587)
435 PRK00784 cobyric acid synthase  77.0    0.42 1.1E-05   25.8  -1.0   21   26-46     16-38  (492)
436 PRK12464 1-deoxy-D-xylulose 5-  76.9     2.7   7E-05   20.5   3.2   13  208-220    91-103 (392)
437 cd01489 Uba2_SUMO Ubiquitin ac  76.9     4.9 0.00012   18.8   4.9   36   20-55      2-38  (312)
438 TIGR00562 proto_IX_ox protopor  76.8     4.6 0.00012   19.0   4.3   38   17-54      2-45  (556)
439 PTZ00079 NADP-specific glutama  76.7     4.9 0.00013   18.8   4.7   20  518-537   445-464 (469)
440 PRK03815 murD UDP-N-acetylmura  76.6       4  0.0001   19.4   3.9   30   19-48      2-31  (401)
441 COG1893 ApbA Ketopantoate redu  76.0     5.1 0.00013   18.7   4.4   30   19-48      2-31  (307)
442 PRK07531 bifunctional 3-hydrox  76.0     5.1 0.00013   18.7   4.5   32   19-50      4-35  (489)
443 cd01486 Apg7 Apg7 is an E1-lik  75.4     3.7 9.3E-05   19.6   3.4   36   20-55      2-38  (307)
444 TIGR01763 MalateDH_bact malate  74.7     3.7 9.5E-05   19.6   3.4   29   20-48      4-34  (308)
445 PRK04663 murD UDP-N-acetylmura  74.3     4.1 0.00011   19.3   3.5   27   19-45      9-35  (438)
446 pfam05221 AdoHcyase S-adenosyl  73.8     3.4 8.6E-05   19.9   3.0   34  202-248   206-240 (430)
447 cd00401 AdoHcyase S-adenosyl-L  73.7     3.6 9.1E-05   19.7   3.1   34  202-248   198-232 (413)
448 COG1251 NirB NAD(P)H-nitrite r  73.6     5.1 0.00013   18.7   3.8   48  160-214   193-240 (793)
449 COG0743 Dxr 1-deoxy-D-xylulose  73.6     2.6 6.6E-05   20.6   2.3   11  470-480   343-353 (385)
450 PRK06197 short chain dehydroge  73.5     5.9 0.00015   18.3   4.3   48    1-50      1-50  (306)
451 PRK09414 glutamate dehydrogena  72.9     6.1 0.00016   18.2   4.8   19  519-537   423-441 (446)
452 COG1492 CobQ Cobyric acid synt  72.6     0.7 1.8E-05   24.3  -0.8   10   37-46     27-36  (486)
453 PRK10637 cysG siroheme synthas  72.5     6.2 0.00016   18.1   4.4   33   18-50     13-45  (457)
454 PRK06567 putative bifunctional  72.2     4.1 0.00011   19.3   3.1   40    8-47    392-431 (1048)
455 PRK11730 fadB multifunctional   71.9     6.4 0.00016   18.0   4.1   69   26-116    35-105 (715)
456 cd01075 NAD_bind_Leu_Phe_Val_D  71.7     6.5 0.00017   18.0   4.6   28   19-46     30-57  (200)
457 PRK07890 short chain dehydroge  71.5     6.6 0.00017   18.0   8.0   30   20-49      8-38  (258)
458 PRK05476 S-adenosyl-L-homocyst  71.1     3.7 9.5E-05   19.6   2.6   34  202-248   204-238 (427)
459 PTZ00075 S-adenosyl-L-homocyst  70.5     3.5   9E-05   19.7   2.4   34  202-248   250-284 (476)
460 PRK04940 hypothetical protein;  70.5     6.1 0.00016   18.2   3.6   31   18-48     60-90  (179)
461 COG1064 AdhP Zn-dependent alco  70.0     7.1 0.00018   17.8   4.6   24  414-437   280-303 (339)
462 COG0281 SfcA Malic enzyme [Ene  69.8     7.1 0.00018   17.7   4.4   18  530-547   389-406 (432)
463 cd05191 NAD_bind_amino_acid_DH  69.7     6.6 0.00017   18.0   3.7   31   18-48     24-55  (86)
464 PRK11154 fadJ multifunctional   69.6     6.2 0.00016   18.1   3.5  103  402-505   444-557 (706)
465 pfam06408 consensus             69.2     7.4 0.00019   17.7   4.2   93   19-116     3-103 (471)
466 COG1179 Dinucleotide-utilizing  68.2     7.7  0.0002   17.5   4.1   39   17-55     30-69  (263)
467 TIGR02279 PaaC-3OHAcCoADH 3-hy  67.8     5.7 0.00015   18.4   3.0   33   17-49      5-37  (508)
468 cd05211 NAD_bind_Glu_Leu_Phe_V  67.8     7.9  0.0002   17.5   4.7   31   18-48     24-54  (217)
469 PRK07831 short chain dehydroge  66.8     8.2 0.00021   17.3   4.6   31   19-49     18-50  (261)
470 PRK07326 short chain dehydroge  66.8     8.2 0.00021   17.3   7.9   30   20-49      7-38  (235)
471 PRK06484 short chain dehydroge  66.7     8.3 0.00021   17.3   7.3   30   20-49      7-38  (530)
472 PRK06505 enoyl-(acyl carrier p  66.2     8.4 0.00021   17.3   4.7   30   20-49     10-42  (271)
473 PRK06171 sorbitol-6-phosphate   65.3     8.8 0.00022   17.2   7.6   39   12-50      3-43  (266)
474 PRK05693 short chain dehydroge  65.1     8.8 0.00022   17.1   7.7   30   20-49      4-34  (274)
475 TIGR00518 alaDH alanine dehydr  64.9     4.8 0.00012   18.9   2.2   36   11-52      7-42  (372)
476 KOG1371 consensus               64.8     8.5 0.00022   17.3   3.4   31   19-49      4-35  (343)
477 pfam05728 UPF0227 Uncharacteri  64.7       9 0.00023   17.1   3.9   30   19-48     60-89  (187)
478 PRK08017 short chain dehydroge  64.6       9 0.00023   17.1   8.1   30   20-49      5-35  (256)
479 pfam01884 PcrB PcrB family. Th  64.0     6.1 0.00015   18.2   2.6   15  320-334   156-175 (231)
480 PRK12481 2-deoxy-D-gluconate 3  63.6     9.4 0.00024   17.0   7.2   31   19-49      9-41  (251)
481 pfam00289 CPSase_L_chain Carba  63.3     9.5 0.00024   16.9   4.5   29   19-47      3-31  (109)
482 PRK04169 geranylgeranylglycery  63.3     6.6 0.00017   18.0   2.6   20  223-242    87-106 (229)
483 PRK07417 arogenate dehydrogena  63.2     9.6 0.00024   16.9   4.2   30   19-48      3-32  (280)
484 TIGR02632 RhaD_aldol-ADH rhamn  63.1     5.9 0.00015   18.3   2.4   98  321-435   492-592 (709)
485 cd05313 NAD_bind_2_Glu_DH NAD(  62.7     9.8 0.00025   16.9   4.9   41   20-64     41-81  (254)
486 PRK01368 murD UDP-N-acetylmura  62.6     9.8 0.00025   16.8   3.6   26   20-45      9-34  (450)
487 COG0499 SAM1 S-adenosylhomocys  62.6     8.6 0.00022   17.2   3.1   32   20-51    212-243 (420)
488 PRK12859 3-ketoacyl-(acyl-carr  62.1      10 0.00026   16.8   4.0   27   20-46      9-38  (257)
489 COG0421 SpeE Spermidine syntha  62.0     8.4 0.00021   17.3   3.0   28   20-47     80-107 (282)
490 TIGR01087 murD UDP-N-acetylmur  61.0      10 0.00027   16.7   3.4   31   20-50      2-34  (476)
491 PRK08594 enoyl-(acyl carrier p  61.0      10 0.00027   16.7   4.4   27   20-46      9-38  (256)
492 PRK08340 glucose-1-dehydrogena  60.6      11 0.00027   16.6   4.8   30   20-49      3-33  (259)
493 TIGR01035 hemA glutamyl-tRNA r  60.5      11 0.00027   16.6   4.0   27   20-46    188-215 (436)
494 PRK07825 short chain dehydroge  60.2      11 0.00028   16.6   6.0  147   20-171     7-175 (273)
495 PRK05786 fabG 3-ketoacyl-(acyl  59.9      11 0.00028   16.5   4.6   31   20-50      8-39  (238)
496 PRK08277 D-mannonate oxidoredu  59.9      11 0.00028   16.5   4.4   40    7-48      2-42  (278)
497 PRK02947 hypothetical protein;  59.5      11 0.00028   16.5   4.7   29   19-47    109-141 (247)
498 KOG2304 consensus               59.4     9.8 0.00025   16.8   3.0   28   20-47     14-41  (298)
499 TIGR01809 Shik-DH-AROM shikima  59.3      11 0.00028   16.5   3.8   30   21-50    134-164 (291)
500 PRK08628 short chain dehydroge  59.3      11 0.00029   16.5   8.7  147   20-171     9-178 (258)

No 1  
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006   Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other .   Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups.   This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=100.00  E-value=0  Score=1455.54  Aligned_cols=586  Identities=56%  Similarity=0.900  Sum_probs=555.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHCCCCEEEECC-CCC-CCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             5889899689999999999889---8299998689885210411653425137-899-9999999998998458877999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLA-NMT-PDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G---~~V~lieK~~~~~g~s~~A~GGi~a~~~-~~~-~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      ||||||+|+|||+||+++++.|   ++|+||+|.++.||||++|||||+|++. +.+ +|||++|++||+|+||||||||
T Consensus         1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD   80 (636)
T TIGR01812         1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD   80 (636)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf             97888186689999999973577961079995569885201535678999957786432072123041101442132589


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCC---------------------CCCEEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             999999988999999998699813279---------------------98551001464114567876564079866654
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNE---------------------AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRT  152 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~---------------------~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~t  152 (611)
                      .|++||+++|+.|-+||+||+||+|.+                     ||.++||+||||+..++ +.+..|+||++|+|
T Consensus        81 Ave~~~~~AP~~v~eLe~wG~PfSR~~kGDRmaiinaqkttiteeDfRDG~IaQR~FGG~~~~~G-g~~a~RTcyAADkT  159 (636)
T TIGR01812        81 AVEYMCKEAPKAVLELERWGVPFSRLPKGDRMAIINAQKTTITEEDFRDGRIAQRPFGGASFDYG-GAAARRTCYAADKT  159 (636)
T ss_pred             HHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCEEECCCCCCCCCCC-CCHHHHHHHHHCCC
T ss_conf             99999851517899997378985678677647776245420020115588353437888886556-62221342001211


Q ss_pred             CHHHHHHHHHHHHHC-CCEEECCCEEEEEEECCCC--CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCC-CCCCCCE
Q ss_conf             266789999998731-2303113156520001344--30124689805870899506724741576565433-4210640
Q gi|254781043|r  153 GHAILHTLYGQALKN-NAEFFIEYFALDLIINSEG--CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYF-SATSAHT  228 (611)
Q Consensus       153 G~~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~dG--~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~-~~t~~~~  228 (611)
                      |+.|+++|++++++. +|+|+.++++++|++|+++  +|.|+|++|+.+|+++.|+||+||||||||||+|+ .|||+..
T Consensus       160 Gh~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~GR~Y~~~tTNa~~  239 (636)
T TIGR01812       160 GHALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRVYKFTTTNAHI  239 (636)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCCHHHHCCCCCCCEE
T ss_conf             31478989999853799427538888778874589867999999980588089996074898306510210304454422


Q ss_pred             ECCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCC--CC---CCCCCCCCCCEEHH
Q ss_conf             144488788751365-3333222328884422014304566557808983268612554--07---65100475201115
Q gi|254781043|r  229 CTGDGAGMVARAGLP-LQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMER--YA---PSAKDLASRDVVSR  302 (611)
Q Consensus       229 ~tGdG~~mA~~aGa~-l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~--y~---~~~~el~~rd~~s~  302 (611)
                      |||||++||||+|.. |.||||||||||||+++|+||||++|||||||+|++|||||++  |+   |..+||||||||||
T Consensus       240 ~TGDG~A~AlraG~PqL~DMEFvQFHPTGL~~sGiL~tEgcRGEGGyL~N~~GeRFM~ryGYAPetP~k~eLApRDvVSR  319 (636)
T TIGR01812       240 NTGDGLAMALRAGVPQLKDMEFVQFHPTGLAPSGILITEGCRGEGGYLINKEGERFMERYGYAPETPEKMELAPRDVVSR  319 (636)
T ss_pred             ECCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             35406888887346431684405036745566771774013327616867875310344688878875000478769999


Q ss_pred             HHHHHHHHCCCCC--CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCE-EEEECCCCCCCCCCCCCCCCEEE
Q ss_conf             6889988178888--88874688611179899999853799999764367865440-67520331001234215771585
Q gi|254781043|r  303 CMMMEIREGRGVG--KSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDP-IPVIPTVHYNMGGIPTNYWGEVL  379 (611)
Q Consensus       303 ai~~ei~~g~g~~--~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~-i~v~p~~hy~~GGi~vd~~g~v~  379 (611)
                      ||..||+||||+.  .++.+|||||+||++|.|++|||.+.|.++.|.|+||.++| |||.|++||+||||.||.+|||.
T Consensus       320 a~~~EireGRGv~~~~~k~~v~LDLrHLGee~i~~RLP~i~E~A~~f~GVDPv~~pWiPVrPt~HY~MGGI~T~~~G~~~  399 (636)
T TIGR01812       320 AMVTEIREGRGVGSGPGKDYVYLDLRHLGEEKIEERLPQIRELAKTFAGVDPVKEPWIPVRPTAHYSMGGIDTNYRGQVI  399 (636)
T ss_pred             HHHHHHHHCCCCCCCCCCCEEEEEHHHCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEE
T ss_conf             99999984488898878877887640134788852075689999970488830057626456444118278445842487


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHH
Q ss_conf             377888533227603402122033566430476432222223215677556654202656----6764002357888631
Q gi|254781043|r  380 DANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPI----PSLDISSCDRIMDRFD  455 (611)
Q Consensus       380 ~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~----~~~~~~~~~~~~~~~~  455 (611)
                      ..++++..+.|+||||||||||.|||||||||||||+|++||||+||.++++++.+....    +....+..+.....+.
T Consensus       400 ~~D~~~~~~iv~GLfAaGE~ACVSVHGANRLGsNSLle~vVFGr~aG~~~ae~~~~~~~~neL~~~~~~~~~~~~~~~~~  479 (636)
T TIGR01812       400 GEDAKNNDSIVKGLFAAGECACVSVHGANRLGSNSLLELVVFGRIAGEAAAEYLAKTGVDNELAADLEEEEVKKEEALID  479 (636)
T ss_pred             CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             01678888621010220102220341213060567999999979999999999860688631133454458999999999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             0103-788713689998788766509726875899999999999999998-41515787754588999999888899999
Q gi|254781043|r  456 RLRH-ADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEM-ADLKVHDRSLIWNSDLVETLELQNLMINA  533 (611)
Q Consensus       456 ~~~~-~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~-~~i~~~d~~~~~n~el~~~~el~~~l~~A  533 (611)
                      .+.+ .++++.+++||++||.+||+||||+|+++.|++|+++|.+|+++. .+|.+.|+++.||+||++++||+|||++|
T Consensus       480 ~~~~~~~~~~~~a~ir~~l~~~M~~~~gvFR~~~~l~~a~~~i~eL~eR~~~~v~i~DKs~~fNTdL~~AlEL~nlL~lA  559 (636)
T TIGR01812       480 LLKEEGNGGERVAQIREELQETMEANVGVFRTEELLKKAVDEIEELRERRYKNVKINDKSKVFNTDLLEALELGNLLDLA  559 (636)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCEECHHHHHHHHHHHHHHHH
T ss_conf             73036788735799999998886658579877322788999999986100164567405421236688899776458999


Q ss_pred             HHHHHHHHCCCCCCCCEECCCCC--CCCCCCCCCHHHCEEEEEEEECC---CCEEEEEEECCCCCCCCCCCCEEECCCCC
Q ss_conf             99999996262550462353377--88766688032135699998468---98059999447444256755000027721
Q gi|254781043|r  534 IATVYSAEARKESRGSHAREDFK--DGEFGGRDDVNWRKHSLCWVDWN---TGKIKLDYRPVHTELLCGGVDYSKIAPKA  608 (611)
Q Consensus       534 e~~~~aal~R~ESRG~H~R~DyP--e~~~~~rDD~nwl~h~~~~~~~~---~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~  608 (611)
                      ++++.|||.|+||||+|+|+|||  +     |||+||||||+++++.+   .+.+++.|+||.+..+..- .++-|+|+.
T Consensus       560 ev~a~gAl~R~ESRGAH~ReDyPCt~-----RDD~NwlkHTla~~~~~~d~~~~~~l~Y~pV~~~~~~~a-r~~Ay~P~~  633 (636)
T TIGR01812       560 EVVAAGALNRKESRGAHAREDYPCTE-----RDDENWLKHTLAYYDNNEDKEGTPKLEYKPVTITKLEIA-RVSAYEPKE  633 (636)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCC-----CCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE-ECCCCCCCC
T ss_conf             99999976085466777513488777-----673136642035378886634560255521312332010-005658777


Q ss_pred             CCC
Q ss_conf             679
Q gi|254781043|r  609 RVY  611 (611)
Q Consensus       609 R~Y  611 (611)
                      |+|
T Consensus       634 R~Y  636 (636)
T TIGR01812       634 RKY  636 (636)
T ss_pred             CCC
T ss_conf             889


No 2  
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281   Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=100.00  E-value=0  Score=1418.24  Aligned_cols=590  Identities=62%  Similarity=1.021  Sum_probs=579.5

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-CCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899-99999999989984588779999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-PDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      |+|||||||+|.|||+||+.+++.|.++.||+|..|.||||++|||||+|+|++.+ +|+|+||++||+|+||||.|||.
T Consensus         1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA   80 (615)
T TIGR01816         1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA   80 (615)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             94227988687568999998632792388983136886411223445788851778798863640310005652124689


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                      +++||+++|++|-+||+||+||+|+++|+|+||+||||+..++++..+.|+|+++||||++|+++||++..|.++.+|.+
T Consensus        81 iE~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~E  160 (615)
T TIGR01816        81 IEYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFNE  160 (615)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf             98862313577876652777978888983320778697521156332324200014202579999876664318744750


Q ss_pred             CEEEEEEECCCCC----CEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf             1565200013443----012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r  175 YFALDLIINSEGC----CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV  250 (611)
Q Consensus       175 ~~~~~Li~d~dG~----V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~  250 (611)
                      +.++|||+++||.    |+|||++++.||+++.|+||+|||||||+||+|+.+||+..+||||++|.+|||.+|+||||+
T Consensus       161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlPlqDmEF~  240 (615)
T TIGR01816       161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLPLQDMEFW  240 (615)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             22110465257895887998898760588888995410789737864056766445655213688887268871132231


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf             32888442201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r  251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP  330 (611)
Q Consensus       251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~  330 (611)
                      ||||||+++.|+||||++|||||+|+|++|||||++|+|.-++|||||||||+|..||.||||+++.+++|||+++||++
T Consensus       241 QFHPTGiagaG~LiTEG~RGEGG~L~Na~GERFMERYAP~~KDLAsRDvVaRsM~~Ei~EGRGvG~~KDhV~l~l~HLg~  320 (615)
T TIGR01816       241 QFHPTGIAGAGVLITEGVRGEGGILLNANGERFMERYAPTAKDLASRDVVARSMTLEIREGRGVGPNKDHVYLKLDHLGE  320 (615)
T ss_pred             CCCHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCH
T ss_conf             23703341087267501214775524688751020016751003686364662588764178969675889886134885


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r  331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL  410 (611)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl  410 (611)
                      |.|.++||.|.|+.+.|+|+||.|+||||.||+||.||||+||++|+||..++++....||||||||||||.|+||||||
T Consensus       321 E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~GE~ACvSVHGANRL  400 (615)
T TIGR01816       321 EVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAGEAACVSVHGANRL  400 (615)
T ss_pred             HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCC
T ss_conf             78865287754899986388851078689886341576732156434886424789861023766424520000253202


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r  411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL  490 (611)
Q Consensus       411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L  490 (611)
                      |+|||++.+||||.||.+++++++.+.+.++...+..+....++..+...++++++++||++||+.|+.|+||+|+++-|
T Consensus       401 GtNSLLDLVVFGR~ag~~~~~~~ke~~~~~~~~~n~~e~~~~~~~~l~~~~g~~~va~lR~~LQ~smq~~~gVFRt~~~l  480 (615)
T TIGR01816       401 GTNSLLDLVVFGRAAGLSAAEYIKEGSDFKPLPENAEEESVKRLDDLREATGNERVADLRRELQRSMQNHAGVFRTGELL  480 (615)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECHHHH
T ss_conf             11245578898899999999971377787787977088999998766411587027899999888886150564546789


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH----
Q ss_conf             9999999999999841515787754588999999888899999999999962625504623533778876668803----
Q gi|254781043|r  491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV----  566 (611)
Q Consensus       491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~----  566 (611)
                      ++++.+|.+|+++++++.+.|++.+||++|+++|||.|||++|++++.||.+||||||+|-|+|||+     |||+    
T Consensus       481 ~~gv~~i~~l~~R~k~~~i~Dks~~~Nt~lvEALEL~nLl~~A~~T~~sA~~RKESRGAHAREDy~~-----RdD~ydys  555 (615)
T TIGR01816       481 QKGVGEISELKERYKNVKINDKSKVWNTDLVEALELDNLLEVAEATVVSAEARKESRGAHAREDYPE-----RDDEYDYS  555 (615)
T ss_pred             HHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCC
T ss_conf             9999999998755641441005620056889998877799999999998862555688865566566-----67622245


Q ss_pred             -------------HHCEEEEEEEECCC---CEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             -------------21356999984689---8059999447444256755000027721679
Q gi|254781043|r  567 -------------NWRKHSLCWVDWNT---GKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       567 -------------nwl~h~~~~~~~~~---g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                                   ||+|||+++.+..+   |+..++|+||+...++.. .++.+||+.|+|
T Consensus       556 kpi~G~~kkpfeenW~kHTl~y~d~g~dk~G~~~~~yk~V~~kp~~~~-~~~t~PP~~R~Y  615 (615)
T TIGR01816       556 KPIQGQQKKPFEENWLKHTLAYKDIGADKEGKVLLSYKPVALKPLTVA-AFETVPPKKRVY  615 (615)
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHCCCCCCCCCC
T ss_conf             665554467612200210013353788888860111001222577555-440587875789


No 3  
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1236.67  Aligned_cols=598  Identities=75%  Similarity=1.238  Sum_probs=576.1

Q ss_pred             CCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             00534413323105889899689999999999889829999868988521041165342513789999999999989984
Q gi|254781043|r    6 NLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKG   85 (611)
Q Consensus         6 ~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~   85 (611)
                      .|-+.|++||+||||||||||+|||+||++|++.|++|+||+|..+.+|+|.+|||||++++++..+||++.|++||+++
T Consensus         1 ~~~~~~~~~d~e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~~~s~s~~AqGGi~aa~~~~~~Ds~~~h~~DTl~a   80 (598)
T PRK09078          1 AMMSAYKIIDHKYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKG   80 (598)
T ss_pred             CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf             98776665566379899995699999999998749907999788999985465410050333789999989999999986


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             58877999999999988999999998699813279985510014641145678765640798666542667899999987
Q gi|254781043|r   86 SDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL  165 (611)
Q Consensus        86 g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~  165 (611)
                      |+++||+++|+.++++++++|+||++|||+|+|+++|++.+++||||+..+..+++.+|+++++|.||++|+..|+++++
T Consensus        81 G~~l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~r~~dG~~~~~~~GGhs~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~  160 (598)
T PRK09078         81 SDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGEGPPAQRTCAAADRTGHAILHTLYQQSL  160 (598)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             35768899999999989999999998599243289988612445643201357875047885067609999999999998


Q ss_pred             HCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCC
Q ss_conf             31230311315652000134430124689805870899506724741576565433421064014448878875136533
Q gi|254781043|r  166 KNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQ  245 (611)
Q Consensus       166 ~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~  245 (611)
                      +.+++++.++.+++||++++|+|+||++++..+|+++.|+||+|||||||++++|..+|||+.+||||++||+||||+|.
T Consensus       161 ~~~i~~~~~~~~~~li~~~~G~v~Gv~~~~~~~G~~~~i~AkaVILATGG~g~~y~~tTn~~~~TGdG~amA~raGA~l~  240 (598)
T PRK09078        161 KHNAEFFIEYFALDLIMDDEGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQ  240 (598)
T ss_pred             HCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             63987999889999998279859999999878995899970769988787776667776999875499999998498725


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             33222328884422014304566557808983268612554076510047520111568899881788888887468861
Q gi|254781043|r  246 DMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYL  325 (611)
Q Consensus       246 ~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~  325 (611)
                      ||||||||||+++++++|++|++||+|++|+|++|||||++|+|...||+|||++|++|+.||++|+|+...+++||||+
T Consensus       241 dmEfiQfhPT~~~~~~~LisE~~rg~G~~L~n~~GerFm~~y~p~~~ela~Rdvvsrai~~ei~~G~g~~~~~~~v~ld~  320 (598)
T PRK09078        241 DMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKKDHIFLHL  320 (598)
T ss_pred             CCHHHHHCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEH
T ss_conf             85787406774357761542103378508989998998544477520024420789999999985478767887479873


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r  326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH  405 (611)
Q Consensus       326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h  405 (611)
                      +|++++.|.++||.+.+.++.+.|+|+.++||||.|++||+||||+||.+|||++..+.+.+|+||||||||||+|+|+|
T Consensus       321 ~~~~~~~l~~~~p~i~~~~~~~~giD~~~~~ipv~P~~Hy~mGGi~id~~g~V~~~~~~~~~T~IpGLyAaGE~a~~G~H  400 (598)
T PRK09078        321 DHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAIGEAACVSVH  400 (598)
T ss_pred             HHCCHHHHHHHCHHHHHHHHHHCCCCCCCCCEECCCCCCEECCCEECCCCCCEEECCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             10898999887758999999966989877864511203440478621767604202578767434621112554446766


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             64304764322222232156775566542026566764002357888631010378871368999878876650972687
Q gi|254781043|r  406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFR  485 (611)
Q Consensus       406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R  485 (611)
                      ||||||||||++|+|||++||++|+++++.....+.++.+..+...+++.++...++..++.+++++||++||+|+|++|
T Consensus       401 GANRLggnsLle~~VfGr~Ag~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R  480 (598)
T PRK09078        401 GANRLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPPLPKDACDKALDRFDRLRHANGSTPTAELRLKMQRTMQNDAAVFR  480 (598)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEC
T ss_conf             55220235688999999999999999863578888998778999999887653178987879999999999862168521


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             58999999999999999984151578775458899999988889999999999996262550462353377887666880
Q gi|254781043|r  486 TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD  565 (611)
Q Consensus       486 ~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD  565 (611)
                      ++++|++++++|+.|++++.++.+.+++..||++|++++|+.||+.+|+++++|||+|+||||+|||+||||     |||
T Consensus       481 ~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~l~~a~el~nll~~A~~i~~aAl~R~ESRG~H~R~DyPe-----~dD  555 (598)
T PRK09078        481 TGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAREDFPD-----RDD  555 (598)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCC
T ss_conf             789999999999999999873676775522146799999999999999999999860654645424788999-----975


Q ss_pred             HHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             3213569999846898059999447444256755000027721679
Q gi|254781043|r  566 VNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       566 ~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      +||+||+++|+ +++|+++++|+||+++....  +++.|||++|+|
T Consensus       556 ~~wl~h~~~~~-~~~g~~~~~~~pv~~~~~~~--~~~~~~p~~r~y  598 (598)
T PRK09078        556 ENWMKHTLAWV-DDKGKVTLDYRPVHLYTLTN--DVQYIPPKKRVY  598 (598)
T ss_pred             HHHHCEEEEEE-CCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCC
T ss_conf             55532078898-79998789854651325677--653319957889


No 4  
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=100.00  E-value=0  Score=1227.07  Aligned_cols=600  Identities=63%  Similarity=1.078  Sum_probs=575.9

Q ss_pred             CCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             00053441332310588989968999999999988982999986898852104116534251378999999999998998
Q gi|254781043|r    5 SNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIK   84 (611)
Q Consensus         5 ~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~   84 (611)
                      |--|..||++||+|||||||||+|||+||++|++.|++|+||||+.+.+|||.+||||||+++++.++||++.|++||++
T Consensus        22 ~~~~~~~~~~~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlk  101 (622)
T PTZ00139         22 SRAKKPYPVIDHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVK  101 (622)
T ss_pred             HHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             74045667657765879999669999999999976990899978899997489998778740678999998999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             45887799999999998899999999869981327998551001464114567876564079866654266789999998
Q gi|254781043|r   85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA  164 (611)
Q Consensus        85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~  164 (611)
                      +|+++||+++|+.||++++++|+||++|||+|+|+++|++.+|.||||+..+..|++.+|+++++|.||+.|++.|.+++
T Consensus       102 aG~~l~d~~lv~~l~~~a~~~V~~Le~~Gv~f~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~  181 (622)
T PTZ00139        102 GSDWLGDQDAIHYMCKEAPCAVSELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCCAAADRTGHAMLHTLYGQS  181 (622)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             62687799999999998999999999779972257998781215677203466787415788757861999999999999


Q ss_pred             HHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf             73123031131565200013443012468980587089950672474157656543342106401444887887513653
Q gi|254781043|r  165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL  244 (611)
Q Consensus       165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l  244 (611)
                      ++.+|.++.++.+++||++++|+|+||++++.++|+++.|+||+|||||||++++|..+||++.+||||++||+++||.|
T Consensus       182 ~~~~i~~~~~~~~~~ll~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tTn~~~~TGdG~amA~raGA~l  261 (622)
T PTZ00139        182 LQYNCNFFIEYFCLDLIMDEDGCCRGVVAMSIADGTIHRFRSKYTVIATGGYGRAYFSCTSAHSCTGDGNAMVARAGLPA  261 (622)
T ss_pred             HHCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             86599799988999999758995999999977899099997136998778754334255689987719999999859870


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             33322232888442201430456655780898326861255407651004752011156889988178888888746886
Q gi|254781043|r  245 QDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLY  324 (611)
Q Consensus       245 ~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld  324 (611)
                      +||||||||||+++++++|++|++||+||+|+|++|||||++|+|...||+|||+++++|..|+.+|||+....++||+|
T Consensus       262 ~dmEfiQfhPt~~~~~~~LisEa~rGeGg~Lvn~~GerFm~~y~p~~~ela~RDvvsrai~~ei~~grg~~~~~~~v~ld  341 (622)
T PTZ00139        262 EDLEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPKAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLQ  341 (622)
T ss_pred             CCCCHHHCCCCCCCCCCCEECHHHCCCCCEEECCCCCCCHHCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             58225310466446864031032026774766137874410037521220204689999999998557877887647864


Q ss_pred             ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             11179899999853799999764367865440675203310012342157715853778885332276034021220335
Q gi|254781043|r  325 LNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASV  404 (611)
Q Consensus       325 ~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~  404 (611)
                      ++|++++.++++||.+.+.+..+.|+|+.++||||.|++||+||||+||.++||++..+.+.+|+||||||||||+|+|+
T Consensus       342 ~~~~~~e~~~~~~p~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGGi~id~~~~vl~~~~~~~~t~I~GLyAaGEva~gGv  421 (622)
T PTZ00139        342 LTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKGEVITQRNNGDDAIVPGLYAAGEAACASV  421 (622)
T ss_pred             CCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             36799999987631289999985189975674010232053367765567752630247886730468423236565775


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             66430476432222223215677556654202656676400235788863101037887136899987887665097268
Q gi|254781043|r  405 HGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVF  484 (611)
Q Consensus       405 hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~  484 (611)
                      |||||||||||++|+|||++||++|+++.+.....+....+..+....++..+...++..++.+++++||++||+|+||+
T Consensus       422 HGANRLggnsLle~~VfGr~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~iM~~~~gi~  501 (622)
T PTZ00139        422 HGANRLGANSLLDIVVFGKSAANTVFELTKPGRKQPDLPANAGEASIARLDRIRHNKGDIPTAQIRLRMQKTMQKHAAVF  501 (622)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             67743677889999998999999999764258988889741789999888777505899789999999999998436879


Q ss_pred             ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf             75899999999999999998415157877545889999998888999999999999626255046235337788766688
Q gi|254781043|r  485 RTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRD  564 (611)
Q Consensus       485 R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rD  564 (611)
                      |++++|++++++|+.|++++.++.+.+.+..||++|++++|+.||+.+|+++++|||+|+||||+|||+||||     ||
T Consensus       502 R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~n~~l~~a~El~n~l~~a~~i~~aAL~R~ESRG~H~R~DyPe-----rd  576 (622)
T PTZ00139        502 RIGESLQEGVEIIEECYSDFSDVRIHDKSLVWNTDLIEALELENLLTQAMQTIEGAEARKESRGAHARDDFPE-----RD  576 (622)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC
T ss_conf             9799999999999999999961714688732136799999999999999999999874624656333888898-----86


Q ss_pred             CHHHCEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             03213569999846-898059999447444256755000027721679
Q gi|254781043|r  565 DVNWRKHSLCWVDW-NTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       565 D~nwl~h~~~~~~~-~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      |+||||||++|+.. ..|++++.|+||.++.+.  .+++.|||+.|+|
T Consensus       577 DenWlkht~~~~~~~~~g~~~~~y~pv~~~~~~--~~~~~~~p~~r~y  622 (622)
T PTZ00139        577 DKNWMKHTLAYLDDAKQGKVRLAYRPVITETLD--NEMETIPPAKRVY  622 (622)
T ss_pred             CHHHCCEEEEEECCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCC
T ss_conf             611303152784468888505885035245667--7633469978889


No 5  
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1164.81  Aligned_cols=584  Identities=53%  Similarity=0.895  Sum_probs=549.0

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf             33231058898996899999999998898299998689885210411653425137899999999999899845887799
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDV   92 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~   92 (611)
                      +..++|||||||||+|||+||++|++.|++|+|++|..+.+|+|.+|||||++++++.++||++.|++||+++|+++|||
T Consensus         8 ~~~~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~~~s~s~~A~GGi~a~~~~~~~Ds~~~h~~DTl~~g~~l~d~   87 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHFHFYDTIKGSDWLGDQ   87 (591)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             87447788999966999999999987699589997889999747887423525258999999899999999861677789


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             99999999889999999986998132799855100146411456787656407986665426678999999873123031
Q gi|254781043|r   93 DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF  172 (611)
Q Consensus        93 ~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~  172 (611)
                      ++|+.+|++++++|+||++||++|+|+++|.+.+++||||+..+. +.+++|+++.+|.||+.|+..|.+++++.+++++
T Consensus        88 ~~v~~l~~~a~~~i~~L~~~Gv~f~r~~dg~~~~r~~gGhs~~~g-~~~~~r~~~~~d~tG~~i~~~l~~~~~~~~v~~~  166 (591)
T PRK07057         88 DAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG-EKPVQRACAAADRTGHALLHTLYQQNVAAKTQFF  166 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             999999998999999999869941017998782135677104456-7864245531677549999999999985298899


Q ss_pred             CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r  173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF  252 (611)
Q Consensus       173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf  252 (611)
                      .++.+++||++++|+|+||+++|..+|+++.|+||+|||||||++++|..+||++.+||||++||++|||.|.|||||||
T Consensus       167 ~~~~~~~ll~~~~G~v~Ga~~~~~~~g~~~~~~AkaVIlATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfiQf  246 (591)
T PRK07057        167 VEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQF  246 (591)
T ss_pred             EEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHEE
T ss_conf             97789999874799699999997579909999833699878887666666679888560999999984997259256423


Q ss_pred             CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf             88844220143045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r  253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV  332 (611)
Q Consensus       253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~  332 (611)
                      |||++.++++|++|++||+|++|+|++|||||++|+|..+||+|||+++++|+.|+++|+|+.+.+.+||||++|++.+.
T Consensus       247 hPt~~~~~~~Lise~~rg~G~~l~n~~GerFm~~y~p~~~elaprd~v~rai~~e~~~g~g~~~~~~~v~ld~~~~~~e~  326 (591)
T PRK07057        247 HPTGVAGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNKDHVLLDLSHIGAET  326 (591)
T ss_pred             CCCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECHHCCCCHHH
T ss_conf             14433687712047551489700367997954440750012004889999999999855787888761000030389999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r  333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS  412 (611)
Q Consensus       333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg  412 (611)
                      +.++||.+.+.++.+.++||.++||||.|++||+||||+||.+|+|++.. .+..|+||||||||||||+|+||||||||
T Consensus       327 ~~~~~~~~~~~~~~~~~iD~~~~~i~v~P~~Hy~mGGi~id~~g~v~~~~-~~~~~~I~GLyAaGEva~~G~HGANRLgg  405 (591)
T PRK07057        327 IMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTS-RDHKEPVNGFYAIGECSCVSVHGANRLGT  405 (591)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCEEECCCCEEEECC-CCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             97553699999998517776347654213444761788857874386337-77786317746432234678765534433


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf             43222222321567755665420265667640023578886310103788713689998788766509726875899999
Q gi|254781043|r  413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSD  492 (611)
Q Consensus       413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~  492 (611)
                      |||++|+|||++||++|++|++.....++.+.+..+....++..+....++.++.+++++||++||+|+||+|++++|++
T Consensus       406 nsL~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~  485 (591)
T PRK07057        406 NSLLDLVVFGRAAGNHIVDHVKKQHEHKPLPADAADFSLARLAKLDKSTSGEYTQDVANDIRATMQKHAGVFRTSALLDE  485 (591)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHHH
T ss_conf             03889998899999999998761676689983367889998887764468988899999999999851578776999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEE
Q ss_conf             99999999999841515787754588999999888899999999999962625504623533778876668803213569
Q gi|254781043|r  493 GCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHS  572 (611)
Q Consensus       493 al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~  572 (611)
                      ++++|+.|++++.++.+.|.+..+|++|++++|++||+++|+++++|||+|+||||+|||+||||     |||+||||||
T Consensus       486 al~~l~~l~~~~~~~~~~d~~~~~n~~~~~~lEl~n~l~~a~~i~~aAl~R~ESRG~H~R~DyPe-----rdD~nwlkht  560 (591)
T PRK07057        486 GVEQILGLKERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYEH-----RDDENWLKHT  560 (591)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCEEE
T ss_conf             99999999999972785885400156779999999999999999999861554742236778887-----8571505578


Q ss_pred             EEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             999846898059999447444256755000027721679
Q gi|254781043|r  573 LCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       573 ~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      +++.+++  +  +.|+||+.    +.+++++|||++|+|
T Consensus       561 ~~~~~~~--~--~~~~~v~~----~~~~~~~~~p~~r~y  591 (591)
T PRK07057        561 LWYSEGD--R--LDYKPVQM----KPLTVESVPPKARTF  591 (591)
T ss_pred             EEEECCC--C--CCCCCCEE----CCEEEEEECCCCCCC
T ss_conf             8997799--6--56665230----231777789834779


No 6  
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1157.28  Aligned_cols=577  Identities=51%  Similarity=0.841  Sum_probs=543.3

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      -+|+|||||||||+|||+||++|++ +.+|+||+|..+.+|+|.+|+|||++++++.++||++.|+.||+++|+++|||+
T Consensus         2 ~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~~~s~s~~a~gGi~a~~~~~~~Ds~e~~~~Dt~~aG~~l~d~~   80 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQD   80 (583)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             7431788999962999999997156-997799978899997288886557402279999999999999998626877999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                      +|+.++++++++|+||++||++|+|+++|++.+++||||++.... .+++|++|++|.||+.|++.|.+++++.+|++++
T Consensus        81 lv~~l~~~~~~~i~~Le~~Gv~f~r~~~G~~~~~~~gghs~~~g~-~~~~r~~~~~d~tG~~i~~~L~~~~~~~~i~~~~  159 (583)
T PRK08205         81 AAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGK-APVRRACYAADRTGHMILQTLYQNCVKHGVEFFN  159 (583)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCCCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999989999999997799730179987711243663345567-7630367506665099999999999877987997


Q ss_pred             CCEEEEEEE---CCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf             315652000---13443012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r  174 EYFALDLII---NSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV  250 (611)
Q Consensus       174 ~~~~~~Li~---d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~  250 (611)
                      ++.+++||+   +++|+|+||++++..+|+++.|+||+|||||||++++|+.+||+..+||||++||+++||.|.||||+
T Consensus       160 ~~~~~~ll~~~~~~~g~v~Ga~~~d~~~g~~~~i~AkaVIlATGG~~~ly~~ttn~~~~tGdG~~mA~raGA~l~dmEfi  239 (583)
T PRK08205        160 EFYVLDLILTETPGGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFH  239 (583)
T ss_pred             EEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHE
T ss_conf             78999999988648982899999980799789997297998889875665565799885529999999869871682111


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf             32888442201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r  251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP  330 (611)
Q Consensus       251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~  330 (611)
                      |||||++.+.++|++|++||+|++|+|++|+|||++|+|...||+|||+++++|+.|+++|||+..+...||||++|+++
T Consensus       240 Q~hPt~~~~~g~l~~e~~rgeGg~l~n~~GeRFm~~y~p~~~elaprd~va~ai~~ei~~grg~~~~~~~v~ld~~~l~~  319 (583)
T PRK08205        240 QFHPTGLAGLGILISEAARGEGGILRNSEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNKDYVYLDLTHLGE  319 (583)
T ss_pred             ECCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf             02563224677654652226885752668868010117211102650066698999987536877886500010025999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r  331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL  410 (611)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl  410 (611)
                      +.|+++||.+.+.++.+.|+||.++||||.|++||+||||.||.+++|++..    .|+||||||||||||+|+||||||
T Consensus       320 e~l~~~~~~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~id~~~~V~~~~----~T~I~GLyAaGEva~~GvHGaNRL  395 (583)
T PRK08205        320 EVLEAKLPDITEFARTYLGVDPVKELVPVYPTAHYAMGGIPTTVTGQVLRDN----TTVVPGLYAAGECACVSVHGANRL  395 (583)
T ss_pred             HHHHHHCHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCEEECCCCEEECCC----CCCCCCCEECCCCCCCCCCCCCCH
T ss_conf             9998766059999998538986467347741344652578968887794579----976687554266553677887531


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r  411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL  490 (611)
Q Consensus       411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L  490 (611)
                      |||||++|+|||++||++|++|++..... ...........+.+..+....+..++.+++++||++||+|+|++|++++|
T Consensus       396 ggnsl~e~~VfGr~AG~~Aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~gi~R~~~~L  474 (583)
T PRK08205        396 GTNSLLDINVFGRRAGIAAAEYARGADFV-DLPEDPEAMVVGWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETL  474 (583)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             56789999999999999999975128878-89730689999999887525789889999999999998616700389999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCE
Q ss_conf             99999999999998415157877545889999998888999999999999626255046235337788766688032135
Q gi|254781043|r  491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRK  570 (611)
Q Consensus       491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~  570 (611)
                      ++++++|+.|+++++++.+.|.+..||++|++++|++|||++|+++++|||+|+||||+|||+|||+     |||+||+|
T Consensus       475 ~~al~~l~~l~~~~~~~~~~d~~~~~n~dl~~~~E~~~~l~~a~~~~~aAl~R~ESRG~H~R~DyPe-----rDD~nwlk  549 (583)
T PRK08205        475 KQALTDIHALKERYSRITVQDKGKRFNSDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPN-----RDDVNYMR  549 (583)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCCCCCC
T ss_conf             9999999999999960843686533277899999999999999999999972643532103757798-----87614055


Q ss_pred             EEEEEEECCC--CEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             6999984689--8059999447444256755000027721679
Q gi|254781043|r  571 HSLCWVDWNT--GKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       571 h~~~~~~~~~--g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      ||++|++..+  +++++.|+||         ++++|+|++|+|
T Consensus       550 ht~~~~~~~~~~~~~~~~~~~v---------~~~~~~p~~r~y  583 (583)
T PRK08205        550 HTMAYREKTDLLSDIRLDYKPV---------VQTRYEPMERKY  583 (583)
T ss_pred             EEEEEECCCCCCCCCEEEEECC---------EEEECCCCCCCC
T ss_conf             0788724888788754664134---------664149806889


No 7  
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00  E-value=0  Score=1159.24  Aligned_cols=565  Identities=39%  Similarity=0.580  Sum_probs=522.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC---CCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             105889899689999999999889829999868988521041165342513789---99999999998998458877999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM---TPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~---~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      +|||||||||+|||+||++|+++|++|+||+|.++.+|+|.+|||||++++++.   .+||++.|+.||+++|+++|||+
T Consensus         5 ~tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~~~snS~~AqGGi~aalg~~~~~~~Ds~e~h~~DTlkgg~~~~d~~   84 (657)
T PRK08626          5 YTDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQE   84 (657)
T ss_pred             ECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf             51689999659999999999975995799968889998647753377663034678999798999999998616888899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------------------EEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             999999988999999998699813279985---------------------51001464114567876564079866654
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGK---------------------IYQRPFGGHMQNYGEGPPVQRTCAAADRT  152 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~---------------------~~~~~~gg~~~~~~~g~~~~R~~~~~d~t  152 (611)
                      +|+.||+++|++|+||++|||||+|.++|.                     +..|.||||+        .+|++|.+|.|
T Consensus        85 ~v~~l~~~ap~~i~~L~~~Gvpf~r~~~G~~~~~~~~~~~~~~~~~~~~g~i~~r~fGG~s--------~~R~~~~~d~t  156 (657)
T PRK08626         85 VARMFAHTAPKAVRELANWGVPWTRVTAGPRTVVVNAQKVTIEEAEEAHGLINARDFGGTK--------KWRTCYTADGT  156 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCE--------EEEEEECCCCC
T ss_conf             9999999899999999975998422667763211354322210000145621100258820--------11245238887


Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCH
Q ss_conf             26678999999873123031131565200013443012468980587089950672474157656543342106401444
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGD  232 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGd  232 (611)
                      |+.|+.+|.+++++.+|++++++.+++||+| +|+|+||+++|.++|+++.|.||+|||||||++++|..+||++.+|||
T Consensus       157 G~~i~~~L~~~~~~~gV~i~~~~~~~~Li~d-~g~~~Gav~~d~~~G~~~~~~AkaVILATGG~g~ly~~tTN~~~~TGd  235 (657)
T PRK08626        157 GHTLLYAVDNEAISLGVPVHDRKEALALIHD-GKRCHGAVARCLITGELRAYVAKGTLIATGGYGRIYKVSTNAVICEGT  235 (657)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCEEEEEEEEE-CCEEEEEEEEECCCCCEEEEEECCEEEECCCCCCEEECCCCCCCCCCH
T ss_conf             7999999999999759949906299999998-999999999965789688986341899326666235523588886778


Q ss_pred             HHHHHHHHC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC
Q ss_conf             887887513-6533332223288844220143045665578089832686125540765100475201115688998817
Q gi|254781043|r  233 GAGMVARAG-LPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG  311 (611)
Q Consensus       233 G~~mA~~aG-a~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g  311 (611)
                      |++||+++| |.|.||||||||||+++++++|++|++||+||+|+|++|+|||++|+|...||+|||+|||+|+.||++|
T Consensus       236 G~amA~raG~A~L~dMEfvQfHPT~l~~~g~LisEa~RGeGg~L~n~~GeRFm~~y~P~~~ELa~RDvVsrai~~ei~~G  315 (657)
T PRK08626        236 GAALALETGVAKLGNMEAVQFHPTAIVPSGILTTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVSRRMTEHIRKG  315 (657)
T ss_pred             HHHHHHHHCCCEECCCHHHEEECCEECCCCCCCHHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             99999980743104843542422224587742205323577667888756011213776444441015668899999836


Q ss_pred             CCCCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             888888-8746886111798999998537999997643678654406752033100123421577158537788853322
Q gi|254781043|r  312 RGVGKS-KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFA  390 (611)
Q Consensus       312 ~g~~~~-~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i  390 (611)
                      +|+... +.+||||++|++++.++++||.+.+.|..|.|+||.+++|||.|++||+||||+||.++++         |+|
T Consensus       316 ~G~~~~~g~~v~LDi~~l~~~~i~~~l~~i~e~~~~f~GiDp~~~~ipV~P~aHYtMGGI~vd~~g~t---------~~I  386 (657)
T PRK08626        316 KGVKSPYGPHLWLDITILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGES---------PGL  386 (657)
T ss_pred             CCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEECCCEEECCCCCC---------CCC
T ss_conf             88667777525743765056776420488999999972979655705742134722668307888862---------673


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             760340212203356643047643222222321567755665420265667--640023578886310103788713689
Q gi|254781043|r  391 PGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPS--LDISSCDRIMDRFDRLRHADGHVPTAA  468 (611)
Q Consensus       391 ~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~  468 (611)
                      |||||||||+|+|+|||||||||||++|+|||++||++||+|++.......  ...+..+...+++..+.+.++..+|.+
T Consensus       387 ~GLyAaGE~a~~GvHGANRLGgNSLlE~vVfGr~AG~~aA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  466 (657)
T PRK08626        387 KGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIIGKYVADFCEGNDLEIDTALVEKFVKKVQDYIDSLIEGDGKENVFE  466 (657)
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             40124035342566654444430489999999999999999986266677823367888989999987742789989999


Q ss_pred             HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99878876650972687589999999999999999841515787754588999999888899999999999962625504
Q gi|254781043|r  469 LREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG  548 (611)
Q Consensus       469 i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG  548 (611)
                      ++++||++||+|+||+|++++|++|+.+|+.|++++.++.+.++...+|++|++++|+.||+.+|+++++|||+|+||||
T Consensus       467 i~~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~N~el~~alEl~nml~~A~~i~~aAL~R~ESRG  546 (657)
T PRK08626        467 IKNEMQRIMMDYVGIFRNGPELEKAVKELQELLERSKNIGLKCKKRHANPELEEALRVPRMLKLALCVACGALARTESRG  546 (657)
T ss_pred             HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999970889688899999999999999999972771577543588999999999999999999999861643542


Q ss_pred             CEECCCCCCCCCCCCCCHHHCEEEEEEEE-CCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             62353377887666880321356999984-6898059999447444256755000027721679
Q gi|254781043|r  549 SHAREDFKDGEFGGRDDVNWRKHSLCWVD-WNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       549 ~H~R~DyPe~~~~~rDD~nwl~h~~~~~~-~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      +|||+|||+     |||+||||||+++|. +++..|++.|+|+.       +....+||..|.|
T Consensus       547 aH~R~DyPe-----rDD~~wLkht~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  598 (657)
T PRK08626        547 AHAREDYPK-----RNDRDWLNRTLASWPEGEALEPTLEYEPLD-------VMKMELPPGFRGY  598 (657)
T ss_pred             CCCCCCCCC-----CCCCCHHCCCCEECCCCCCCCCEEEEEECC-------EEECCCCCCCCCC
T ss_conf             247678898-----764124231142058877668523102254-------0322468630345


No 8  
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1153.12  Aligned_cols=579  Identities=52%  Similarity=0.867  Sum_probs=546.1

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      +||||||||||+|||+||++|++.|++|+||+|..+.+|+|.+|||||++++++..+||++.|+.||+++|+++||+++|
T Consensus         6 ~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~~~~s~s~~A~GGi~~a~~~~~~Ds~e~h~~Dtlkag~~l~d~~~v   85 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             56798999954999999999987499389997889899861666310205037999999999999999963787889999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                      +.++++++++|+||++|||+|+|+++|.+.+++|+||+..+ .|++.+|+++.+|.||+.|++.|++++.+.+|+++.++
T Consensus        86 ~~l~~~~~~~v~~L~~~Gv~f~r~~~G~~~~r~~gg~s~~~-gg~~~~R~~~~~d~tG~~i~~~L~~~~~~~~i~i~~~~  164 (588)
T PRK08958         86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNF-GGEQAARTAAAADRTGHALLHTLYQQNLKNKTTIFSEW  164 (588)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             99999889999999986998614789975001368720002-77633247631576445888768999853598899968


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             56520001344301246898058708995067247415765654334210640144488788751365333322232888
Q gi|254781043|r  176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT  255 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt  255 (611)
                      .+++||++++|+|+||+++|.++|+++.|+||+|||||||++++|..+||++.+||||++||+||||.|.||||||||||
T Consensus       165 ~~~~li~~~~G~v~G~~~~~~~~g~~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfiQfhPT  244 (588)
T PRK08958        165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPT  244 (588)
T ss_pred             EEEEEEECCCCEEEEEEEEECCCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHCEECC
T ss_conf             99999885899699999997789919999827699906986544545558999761999999985997368455202047


Q ss_pred             CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCC-CCEEEEEECCCCHHHHH
Q ss_conf             44220143045665578089832686125540765100475201115688998817888888-87468861117989999
Q gi|254781043|r  256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS-KDHIHLYLNHLDPAVLQ  334 (611)
Q Consensus       256 ~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~-~~~v~ld~~~~~~~~l~  334 (611)
                      ++.++++|++|++||+|++|+|++|||||++|+|..+||+|||+++++|+.||++|+|.... +.+++++++|++++.++
T Consensus       245 ~~~~~~~Li~Ea~rgeG~~l~n~~GeRFm~~~~p~~~eLa~Rd~v~~ai~~ei~~g~g~~~~~~~~~~l~~~~~~~~~~~  324 (588)
T PRK08958        245 GIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLE  324 (588)
T ss_pred             CCCCCCCCCCHHHCCCCCEEECCCCCEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHH
T ss_conf             20677731122103777578757871734222776312343006677779999855786677776379981103878898


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             98537999997643678654406752033100123421577158537788853322760340212203356643047643
Q gi|254781043|r  335 ERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNS  414 (611)
Q Consensus       335 ~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggns  414 (611)
                      ++||.+.+.++.+.++||.++||||.|++||+||||+||.+++|+..+++...|+||||||||||||+|+||||||||||
T Consensus       325 ~~~p~~~~~~~~~~~iD~~~~~ipv~P~~Hy~mGGi~vd~~g~v~~~~~~~~~T~I~GLyAaGEva~~GvHGaNRLggns  404 (588)
T PRK08958        325 SRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNS  404 (588)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEECCEECCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHH
T ss_conf             76147999999856978655863111467765478772566606631677766414754543542325556665430067


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf             22222232156775566542026566764002357888631010378871368999878876650972687589999999
Q gi|254781043|r  415 LIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGC  494 (611)
Q Consensus       415 l~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al  494 (611)
                      |++|+|||++||.+|++++...........+.++...+++..+...+++.+|.+++++||++||+++||+|++++|+++|
T Consensus       405 l~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~i~~~lq~~m~~~~gi~R~~~~L~~al  484 (588)
T PRK08958        405 LLDLVVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKDLQECMQNNFSVFREGDAMAKGL  484 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHH
T ss_conf             89999999999999999876157777877778999999875331267888989999999999984678898689999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEE
Q ss_conf             99999999984151578775458899999988889999999999996262550462353377887666880321356999
Q gi|254781043|r  495 RNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLC  574 (611)
Q Consensus       495 ~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~  574 (611)
                      ++|+.|++++..+.+.+.+..||++|++++|++||+.+|+++++|||+|+||||+|||.|||+     |||+||+|||+.
T Consensus       485 ~~l~~l~~~~~~~~~~~~~~~~n~~~~~~~El~n~l~~a~~~~~aAL~R~ESRG~H~R~DyP~-----rdD~~wl~ht~~  559 (588)
T PRK08958        485 EELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFPD-----RDDENWLCHSLY  559 (588)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCHHHCCEEEE
T ss_conf             999999999863756676421240079999999999999999999871523520041768899-----998312715889


Q ss_pred             EEECCCCEE---EEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             984689805---9999447444256755000027721679
Q gi|254781043|r  575 WVDWNTGKI---KLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       575 ~~~~~~g~~---~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      +  ++.+.+   ++.|+||         .++.|||++|+|
T Consensus       560 ~--~~~~~~~~~~v~~~~~---------~~~~~~p~~r~y  588 (588)
T PRK08958        560 L--PETESMTRRSVNMEPK---------LREAFPPKIRTY  588 (588)
T ss_pred             E--CCCCCCCCCCEECCCC---------CCCCCCCCCCCC
T ss_conf             7--7899756662223560---------104408816889


No 9  
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1148.90  Aligned_cols=568  Identities=52%  Similarity=0.875  Sum_probs=540.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999998898299998689885210411653425137899-9999999998998458877999999999988999999
Q gi|254781043|r   30 LRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYE  108 (611)
Q Consensus        30 l~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~  108 (611)
                      |+|||+|++.|++|+||+|.++.+|+|.+||||||+++...+ +|||+.|++||+++|+++||+++|+.+|+++++.|+|
T Consensus         1 L~AAl~~~~~G~~V~vv~K~~~~~sns~~AqGGi~aa~~~~~~~Ds~~~h~~DTl~aG~~l~d~~~V~~l~~~a~~~i~~   80 (570)
T PRK05675          1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE   80 (570)
T ss_pred             CHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             95789999769918999789999878788764678764379999788999999999617756899999999989999999


Q ss_pred             HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCC
Q ss_conf             99869981327998551001464114567876564079866654266789999998731230311315652000134430
Q gi|254781043|r  109 LEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC  188 (611)
Q Consensus       109 Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V  188 (611)
                      |++|||+|+|+++|.+.+|+||||+..+..|++++|+++++|.||+.|+++|++++++.+|+++.++.+++||+++||+|
T Consensus        81 L~~~Gv~F~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~~i~~~~~~~~~~li~~~dg~v  160 (570)
T PRK05675         81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV  160 (570)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEE
T ss_conf             99769988669998771244676004556677502577623559999999999998717988999689876557479829


Q ss_pred             EEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             12468980587089950672474157656543342106401444887887513653333222328884422014304566
Q gi|254781043|r  189 VGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGA  268 (611)
Q Consensus       189 ~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~  268 (611)
                      +||+++|.++|+++.|+||+|||||||++++|..+|||+++||||++||++|||+|.||||||||||+++++++|++|++
T Consensus       161 ~Gv~~~d~~~g~~~~i~AkaVVLATGG~g~ly~~ttn~~~~tGDG~amA~raGA~l~dmEfiQfhPT~l~~~~~Lisea~  240 (570)
T PRK05675        161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC  240 (570)
T ss_pred             EEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHEEECCCCCCCCCCCCCCC
T ss_conf             99999975899789998346999169886656765699876749999999879846483171573132257873014012


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             55780898326861255407651004752011156889988178888888746886111798999998537999997643
Q gi|254781043|r  269 RGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFA  348 (611)
Q Consensus       269 rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~  348 (611)
                      ||+|++|+|++|||||++|+|...||+|||+++++|+.||.+|+|+...+.+||+|++|++++.++++||.+.+.++.+.
T Consensus       241 rgeGa~L~n~~GerFm~~~~p~~~eLa~RDvvsrai~~ei~~g~g~~~~~~~v~ld~~~~~~~~~~~~~p~~~~~~~~~~  320 (570)
T PRK05675        241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFA  320 (570)
T ss_pred             CCCCCEEECCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             27866898778718752207620220230576577899998456867888768977123899999752368999999863


Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             67865440675203310012342157715853778885332276034021220335664304764322222232156775
Q gi|254781043|r  349 GVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIR  428 (611)
Q Consensus       349 g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~  428 (611)
                      ++||.++||||.|++||+||||+||.+|+++..+.+.+.|+||||||||||||+|+|||||||||||++|+|||++||.+
T Consensus       321 ~iD~~~~~i~v~P~~Hy~mGGi~id~~g~~i~~d~~~~~t~I~GLyAaGE~a~~GvHGANRLggNsLle~~VfGr~Ag~~  400 (570)
T PRK05675        321 HVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLH  400 (570)
T ss_pred             CCCCCCCCEEEECCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             88865575675144383048876367762530366777732153354114234676656664216778889869999999


Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             56654202656676400235788863101037887136899987887665097268758999999999999999984151
Q gi|254781043|r  429 ASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLK  508 (611)
Q Consensus       429 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~  508 (611)
                      |+++++.............+....++..+....++.++.+++++||++||+++||+|++++|++++++|+.|++++.++.
T Consensus       401 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~  480 (570)
T PRK05675        401 LEKALREGIEYRDASETDIDAALARLNGLNERTGGEDVAPLRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK  480 (570)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99876336766788766789999987543216899676999999999999845665279999999999999999998385


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEEEEEC-CCCEEEEEE
Q ss_conf             5787754588999999888899999999999962625504623533778876668803213569999846-898059999
Q gi|254781043|r  509 VHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDW-NTGKIKLDY  587 (611)
Q Consensus       509 ~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~~~~~-~~g~~~~~~  587 (611)
                      +.|+...||++|++++|++||+++|+++++|||+|+||||+|||+|||+     |||+||||||+++... ..+++.++|
T Consensus       481 ~~d~~~~~n~~~~~a~El~n~l~~a~~i~~aAl~R~ESRG~H~R~DyPe-----rDD~nwlkHt~~~~~~~~~~~~~~~~  555 (570)
T PRK05675        481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEHRKESRGAHAREDFED-----RDDENWLCHTLYFPGEKRVAKRAVNF  555 (570)
T ss_pred             CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf             3786400054789999999999999999999971754656467877898-----88867254877816898667671131


Q ss_pred             ECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             447444256755000027721679
Q gi|254781043|r  588 RPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       588 ~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      +||         ++++|||+.|+|
T Consensus       556 ~~~---------~i~~~~P~~R~y  570 (570)
T PRK05675        556 APK---------TVPAFEPKVRTY  570 (570)
T ss_pred             CCC---------EEEEECCCCCCC
T ss_conf             153---------352128826889


No 10 
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1149.21  Aligned_cols=577  Identities=30%  Similarity=0.436  Sum_probs=520.9

Q ss_pred             CCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHH
Q ss_conf             0053441332310588989968999999999988982999986-8988521041165342513789-9999999999899
Q gi|254781043|r    6 NLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK-VFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTI   83 (611)
Q Consensus         6 ~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK-~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~   83 (611)
                      .+|.++|-..++|||||||||+|||+|||+|++.|++|+|++| ..+.+|||.+|||||||+++.. ++|||+.|++||+
T Consensus        22 ~~~~~~~~~~~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~~~~~~snS~~AqGGInAa~~~~~~~DS~e~H~~DTl  101 (638)
T PRK07573         22 HLKLVNPANKRKFDIIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTV  101 (638)
T ss_pred             CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             48556866466488899996699999999999749956999922899962088875556740468999989899999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHH----H
Q ss_conf             845887799999999998899999999869981327998551001464114567876564079866654266789----9
Q gi|254781043|r   84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILH----T  159 (611)
Q Consensus        84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~----~  159 (611)
                      ++|+|+||+++|+.+|+++|+.|+||++|||+|+|+++|.+.++.||||+        .+|++|++|.||++|+.    .
T Consensus       102 kaG~gl~d~~~V~~l~~~ap~~I~~L~~~Gv~Fdr~~~g~l~~~~~GGhS--------~~Ri~ha~d~TG~~i~~~l~~~  173 (638)
T PRK07573        102 KGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQ--------VSRTFYARGQTGQQLLLGAYSA  173 (638)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCEEEECCCCCHHHHHHHHHHH
T ss_conf             86278774999999999889999999975998756899866044566766--------5247732896168999999999


Q ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf             99998731230311315652000134430124689805870899506724741576565433421064014448878875
Q gi|254781043|r  160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVAR  239 (611)
Q Consensus       160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~  239 (611)
                      |.+++.+.+|+++.++.+++||++ ||+|.||+++|..+|++..|.||+|||||||++++|+.||||.++||||++||+|
T Consensus       174 L~~~~~~~~I~~~~~~~~~dLi~~-dg~~~Gv~~~d~~~G~~~~~~AkaVILATGG~g~ly~~TTN~~~atGDG~a~A~r  252 (638)
T PRK07573        174 LSRQIAAGTVELFTRTEMLDLVVV-DGRARGIVARNLVTGEIERHAADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHK  252 (638)
T ss_pred             HHHHHHCCCCEEEECEEEEEEEEE-CCEEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             999873389889935799998998-9999999999658994899971679985785751212525899884799999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCE------EECCCCCCCCCEEEEECCC--------------CCCCCCCCCCCCCCCCCCE
Q ss_conf             1365333322232888442201------4304566557808983268--------------6125540765100475201
Q gi|254781043|r  240 AGLPLQDMEFVQFHPTGIYGAG------CLITEGARGEGGYLVNSKG--------------ERFMERYAPSAKDLASRDV  299 (611)
Q Consensus       240 aGa~l~~mEf~qfhPt~~~~~~------~l~~~~~rg~G~~l~n~~G--------------erf~~~y~~~~~el~~rd~  299 (611)
                      +||.|.||||||||||+++.++      +|+||++||+|++|+|.++              ++||++|+|..+||+||||
T Consensus       253 aGA~l~dmEfvQfHPT~l~~~~~~~~~~~LisEavRGeGailv~~~~~d~~~~~~i~~~er~~fmer~yp~~geLapRDv  332 (638)
T PRK07573        253 KGAYFANPCFTQIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDARKPNDIPEEERDYYLERRYPAFGNLVPRDV  332 (638)
T ss_pred             CCCCCCCCHHEEEECCCCCCCCCCCCCCEEEEHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             69973584241674310057875455533654234145643125443332341114416777888762543355325389


Q ss_pred             EHHHHHHHHHHCCCCCCCCCEEEEEEC----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             115688998817888888874688611----1798999998537999997643678654406752033100123421577
Q gi|254781043|r  300 VSRCMMMEIREGRGVGKSKDHIHLYLN----HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYW  375 (611)
Q Consensus       300 ~s~ai~~ei~~g~g~~~~~~~v~ld~~----~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~  375 (611)
                      |||+|+.||++|+|+..++.+||||++    |++++.++++||.+.+.+.++.|+||.++||||.|++||+||||+||.+
T Consensus       333 Vsrai~~ei~~Grg~~~~~~~V~LD~~~~i~~~~~~~i~~r~p~~~~~~~~~~g~D~~~~pIpV~PaaHy~MGGI~vD~~  412 (638)
T PRK07573        333 ASRAAKERCDAGRGVGPGGLAVYLDFADAIKRLGEDVIRERYGNLFEMYERITGEDPYKTPMRIYPAVHYTMGGLWVDYN  412 (638)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf             99999999986268689986443135777653288999998756999999983999545861252355600379668877


Q ss_pred             CEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCC--C----CHHHH
Q ss_conf             15853778885332276034021220335664304764322222232156-77556654202656676--4----00235
Q gi|254781043|r  376 GEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA-VIRASEMIDKSSPIPSL--D----ISSCD  448 (611)
Q Consensus       376 g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~A-g~~aa~~~~~~~~~~~~--~----~~~~~  448 (611)
                      ++          |+||||||||||+| |+|||||||||||+||+|||+++ +..++.+..........  +    .+..+
T Consensus       413 ~~----------T~I~GLyAaGE~a~-gvHGANRLgsNSLlE~lVfG~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  481 (638)
T PRK07573        413 LM----------STIPGLFVIGEANF-SDHGANRLGASALMQGLADGYFVLPYTIGNYLAGTIGTPKVSTDHPEFKEAEA  481 (638)
T ss_pred             CC----------CCCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             65----------52587188543475-76542120456699998726000024677887640245677767656788999


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             78886310103788713689998788766509726875899999999999999998-41515787754588999999888
Q gi|254781043|r  449 RIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEM-ADLKVHDRSLIWNSDLVETLELQ  527 (611)
Q Consensus       449 ~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~-~~i~~~d~~~~~n~el~~~~el~  527 (611)
                      ...+++.++.+.++..+|.+++++||++||++|||+|++++|++|+.+|++|++++ +++.+++++..||++|.+++|+.
T Consensus       482 ~~~~~~~~l~~~~g~~~~~~ir~~L~~~M~~~vGI~R~~~~L~~al~~l~~l~~~~~~~~~v~~~~~~~N~~l~~alel~  561 (638)
T PRK07573        482 EVQDRIDRLLNINGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIPALREEFWKNVRVPGSGDELNQELEKAGRVA  561 (638)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999998761589989899999999999852586777999999999999999999717714788521068999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC-CCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCC
Q ss_conf             89999999999996262550462353377887-66688032135699998468980599994474442567550000277
Q gi|254781043|r  528 NLMINAIATVYSAEARKESRGSHAREDFKDGE-FGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAP  606 (611)
Q Consensus       528 ~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~-~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p  606 (611)
                      |||++|+++++|||+|+||||+|||+|||++| .-.|||+||++|++++++++..++.+.|+||         ++++|+|
T Consensus       562 nml~vA~~i~~sAL~RkESRGaH~R~DyP~~D~~~~RdD~~~~~~~~~~~~~~~~~~~~~~~pv---------~~~~~~p  632 (638)
T PRK07573        562 DFLELGELMCRDALHREESCGGHFREEHQTEDGEALRDDENFAYVAAWEYKGEGKEPVLHKEPL---------EFENVHL  632 (638)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCEEEECCC---------EEEEECC
T ss_conf             8999999999999846656564577456898887666616555333555548888731531571---------4666787


Q ss_pred             CCCCC
Q ss_conf             21679
Q gi|254781043|r  607 KARVY  611 (611)
Q Consensus       607 ~~R~Y  611 (611)
                      ++|+|
T Consensus       633 ~~R~Y  637 (638)
T PRK07573        633 AQRSY  637 (638)
T ss_pred             CCCCC
T ss_conf             35778


No 11 
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00  E-value=0  Score=1124.41  Aligned_cols=560  Identities=42%  Similarity=0.689  Sum_probs=524.2

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             310588989968999999999988--982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      .+|||||||||+|||+||++|++.  |++|+|++|..+.+|+|.+|+||++++..  .+||++.|++||+++|+|+|||+
T Consensus         3 ~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~~~s~s~~a~GG~~a~~~--~~Ds~e~~~~Dt~~~G~~l~d~~   80 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ--DHDSFDYHFHDTVAGGDWLCEQD   80 (582)
T ss_pred             EECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHEEECC--CCCCHHHHHHHHHHHHCCCCCHH
T ss_conf             3556899996699999999999868998599997899899861877612504479--99999999999999706788899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf             9999999889999999986998132799855100146411456787656407986665426678999999873-123031
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFF  172 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~  172 (611)
                      +|+.|+++++++|+||++|||||+|+++|.+.+++||||+        .+|+++++|.||..|++.|.+++++ .+|+++
T Consensus        81 lv~~l~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~~~gGhs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~~i~~~  152 (582)
T PRK09231         81 VVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMK--------IERTWFAADKTGFHMLHTLFQTSLQYPQIQRF  152 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCC--------CCEEEECCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9999999999999999984998215799877543048710--------46123358986699999999999856997899


Q ss_pred             CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r  173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF  252 (611)
Q Consensus       173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf  252 (611)
                      +++++++||++ ||+|+||+++|..+|+++.|+||+|||||||++++|.++||++.+||||++||+++||.|.||||+||
T Consensus       153 ~~~~~~~Ll~~-dg~v~Ga~~~d~~~G~~~~i~AkaVILATGG~g~l~~~~tn~~~~TGdG~amA~raGA~l~dmEfiQ~  231 (582)
T PRK09231        153 DEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMAMAYRHGVPLRDMEFVQY  231 (582)
T ss_pred             EEEEEEEEEEC-CCEEEEEEEEECCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
T ss_conf             75999888963-98089999998899968999737699867887655357788887467999999985998378268734


Q ss_pred             CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC-----------CCCCCCCCCCEEHHHHHHHHHHCCCCCC-CCCE
Q ss_conf             888442201430456655780898326861255407-----------6510047520111568899881788888-8874
Q gi|254781043|r  253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYA-----------PSAKDLASRDVVSRCMMMEIREGRGVGK-SKDH  320 (611)
Q Consensus       253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~-----------~~~~el~~rd~~s~ai~~ei~~g~g~~~-~~~~  320 (611)
                      |||+++.+++|++|++||+||+|+|++|+|||++|.           ....||+|||+++++|+.|+++|+++.. .+..
T Consensus       232 hPt~~~~~~~l~~e~~rg~Ggilvn~~G~rF~~~~~~~~~~~~~~~~~~~~el~~rd~v~~ai~~e~~~g~~~~~~~g~~  311 (582)
T PRK09231        232 HPTGLPGSGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDV  311 (582)
T ss_pred             CCCCCCCCCCEEEEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf             68745777624312014686089898876836640656556443420332201732788999999997178644678865


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf             68861117989999985379999976436786544067520331001234215771585377888533227603402122
Q gi|254781043|r  321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG  400 (611)
Q Consensus       321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a  400 (611)
                      ||+|++|++++.+.+++|.+.+.++.+.|+||.++||||.|++||+||||+||.+++          |+||||||||||+
T Consensus       312 v~lDl~~l~~~~~~~~~p~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~vD~~~~----------t~I~GLyAaGEva  381 (582)
T PRK09231        312 VYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTVHYTMGGIETDQNCE----------TRIKGLFAVGECS  381 (582)
T ss_pred             EEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCEEECCCCC----------CCCCCEEEEECCC
T ss_conf             772013258999986538999999997198955675154530038778933788987----------6468738811444


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             0335664304764322222232156775566542026566764-002357888631010378871368999878876650
Q gi|254781043|r  401 CASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLD-ISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQL  479 (611)
Q Consensus       401 ~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~  479 (611)
                      |+|+|||||||||||++|+|||++||++|+++++.....+... ........+++..+.+.++..++.+++++||++||+
T Consensus       382 ~~GvHGANRLggnsl~e~~VfG~~Ag~~Aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~m~~  461 (582)
T PRK09231        382 SVGLHGANRLGSNSLAELVVFGRLAGEQAAERAATAGPGNEAAIDAQAADVEARLKALVNQEGGENWAKIRDEMGLSMEE  461 (582)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             16677765322346899999999999999998863688885234556778887888764257898999999999999973


Q ss_pred             CCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC--CCC
Q ss_conf             972687589999999999999999841515787754588999999888899999999999962625504623533--778
Q gi|254781043|r  480 DAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARED--FKD  557 (611)
Q Consensus       480 ~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~D--yPe  557 (611)
                      |+||+|++++|++++++|++|+++++++.+.+.+..||++|++++|++|||.+|+++++|||+|+||||+|||+|  ||+
T Consensus       462 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~el~~~~E~~n~l~~a~~~~~aAl~R~ESRG~H~R~D~~~P~  541 (582)
T PRK09231        462 GCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAEAMAHSALARKESRGAHQRLDEGCTE  541 (582)
T ss_pred             CCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCC
T ss_conf             26878878999999999999999997285067765557789999999999999999999986053244221477889998


Q ss_pred             CCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             876668803213569999846898059999447444256755000027721679
Q gi|254781043|r  558 GEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       558 ~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                           |||+||+|||+++++ .+|+++++|+||         ++++|+|++|+|
T Consensus       542 -----rdD~nwl~ht~~~~~-~~g~~~~~~~~v---------~~~~~~p~~r~y  580 (582)
T PRK09231        542 -----RDDVNFLKHTLAFYD-ADGTPRIEYSDV---------KITKSPPAKRVY  580 (582)
T ss_pred             -----CCCCCCCEEEEEEEC-CCCCEEEEEECC---------EEEEECCCCCCC
T ss_conf             -----776040106899998-999867876343---------120008826788


No 12 
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1124.34  Aligned_cols=565  Identities=44%  Similarity=0.751  Sum_probs=529.8

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             105889899689999999999889--829999868988521041165342513789-99999999998998458877999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      +|||||||||+|||+||++|++.|  ++|+|++|..+.+|+|.+|+|||++++.+. +.||++.|++||+++|++++||+
T Consensus         3 e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l~d~~   82 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYLADQD   82 (575)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             08989999659999999999987899829999788999972688878899884379999899999999998646888899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                      +|+.++++++++|+||++||++|+|+++|++.+++|+||+        ++|++++++.||..|++.|.+++++.||++++
T Consensus        83 lv~~l~~~~~~~v~~Le~~Gv~f~r~~dG~~~~~~~gGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~  154 (575)
T PRK05945         83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHS--------HNRTCYAADKTGHAILHELVNNLRRYGVTIYD  154 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9999999999999999986997760889888011036710--------25554568883999999999998546978994


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             31565200013443012468980587089950672474157656543342106401444887887513653333222328
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH  253 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfh  253 (611)
                      ++.+++||++ ||+|+||++++..+|+++.|+||+|||||||++++|..+||+.++||||++||+++||+|+||||+|||
T Consensus       155 ~~~v~~Ll~~-dg~v~Ga~~~~~~~G~~~~i~AkaVVlATGG~~~~~~~ttn~~~~TGdG~~ma~raGA~l~dmEfiQfh  233 (575)
T PRK05945        155 EWYVMRLILE-ENEAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFH  233 (575)
T ss_pred             EEEEEEEEEE-CCEEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf             1788889870-997899999971688389998998998999987788888899877359999999859871683687417


Q ss_pred             CCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCC----CCCEEEEEECCCC
Q ss_conf             884422014304566557808983268612554076510047520111568899881788888----8874688611179
Q gi|254781043|r  254 PTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGK----SKDHIHLYLNHLD  329 (611)
Q Consensus       254 Pt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~----~~~~v~ld~~~~~  329 (611)
                      ||+++++++|+++++||+|++|+|++|+|||++|+|..+||+|||+++++|+.|+++|||+..    ++.++|+|++|++
T Consensus       234 Pt~~~~~g~l~~e~~rg~Ga~l~n~~GerF~~~y~p~~~ela~rdv~~~ai~~ei~~grg~~~~~~~g~~~v~ld~~~~~  313 (575)
T PRK05945        234 PTGLYPVGVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINLDGSAGGPFVYLDLRHMG  313 (575)
T ss_pred             CCCCCCCCCEECHHHCCCCEEEECCCCCCHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
T ss_conf             64215766430053236862896379953255406200002651255799999998578767676668855897564358


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             89999985379999976436786544067520331001234215771585377888533227603402122033566430
Q gi|254781043|r  330 PAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR  409 (611)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanr  409 (611)
                      ++.+.+++|..++.+.++.|+|+.++||||.|++||+||||+||.+++|++..    .|+||||||||||+|+|+|||||
T Consensus       314 ~e~~~~~~~~~~~~~~~~~GiD~~~~~i~v~P~~Hy~mGGi~id~~~~v~~~~----~t~I~GLyAaGE~ag~g~HGanR  389 (575)
T PRK05945        314 KEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSA----DTLVEGFFAAGECACVSVHGANR  389 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCEEECCCCEEECCC----CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             89998762899999999728986556357642443763675777787682478----86556650136677567766654


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             4764322222232156775566542026566764002-357888631010378871368999878876650972687589
Q gi|254781043|r  410 LGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISS-CDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQD  488 (611)
Q Consensus       410 lggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~  488 (611)
                      ||||||++|+|||++||++|++|++.. ..+..+.+. .....+++..+...++..+|.+++++||++||+|+||+|+++
T Consensus       390 Lggnsl~e~~VfG~~Ag~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~  468 (575)
T PRK05945        390 LGSNSLLECVVYGRRTGAAIAEYVQGR-KLPEVDEQRYLKEAQQRIQALLEQSGTIRINQLRQQFQDCMTDHCGVFRTEA  468 (575)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEECHH
T ss_conf             322028999999999999999987428-9999986788899999998875378998999999999999985068432689


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHH
Q ss_conf             99999999999999984151578775458899999988889999999999996262550462353377887666880321
Q gi|254781043|r  489 SLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNW  568 (611)
Q Consensus       489 ~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nw  568 (611)
                      +|++++++|++|++++.++.+.+.+..||++|++++|++||+.+|+++++|||+|+||||+|||.||||     |||+||
T Consensus       469 ~L~~al~~l~~l~~~~~~~~~~~~~~~~n~el~~~~E~~n~l~~a~~~~~aal~R~ESRG~H~R~DyPe-----~DD~~w  543 (575)
T PRK05945        469 IMQEGLEKIQELKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGELILTSALNRQESRGAHSREDYPQ-----RDDQNF  543 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCC
T ss_conf             999999999999999984684777631017899999999999999999999871512454004867787-----757203


Q ss_pred             CEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             3569999846898059999447444256755000027721679
Q gi|254781043|r  569 RKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       569 l~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      +|||+++++  .+++++.|+||         .++.+||++|+|
T Consensus       544 lkht~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y  575 (575)
T PRK05945        544 LQHTLAYYS--PAGIDIQYMPV---------VITMFEPQERKY  575 (575)
T ss_pred             CCEEEEEEE--CCCCEEEEECC---------EEEEECCCCCCC
T ss_conf             145789993--89556987503---------565418806889


No 13 
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1116.06  Aligned_cols=561  Identities=44%  Similarity=0.700  Sum_probs=524.8

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC--CCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf             2310588989968999999999988982999986898852104116534251378--99999999999899845887799
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN--MTPDSWQWHLYDTIKGSDWLGDV   92 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~--~~~Ds~~~~~~Dt~~~g~~l~d~   92 (611)
                      ..+|||||||||+|||+||++|++.|++|+||+|..+.+|+|.+|+|||++++..  .+.||++.|++||+++|+++||+
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l~d~   82 (566)
T PRK06452          3 KLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYLVDQ   82 (566)
T ss_pred             EEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             68707899997499999999998779978999788999975368668206863579999989999999999854688899


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             99999999889999999986998132799855100146411456787656407986665426678999999873123031
Q gi|254781043|r   93 DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF  172 (611)
Q Consensus        93 ~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~  172 (611)
                      ++++.++++++++|+||++||+||+|+++|++.++.||||+        ++|+++++|.||..|+++|.+++.+.+|+++
T Consensus        83 ~~v~~l~~~~~~~i~~L~~~Gv~f~r~~dG~~~~~~~gghs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~i~~~  154 (566)
T PRK06452         83 DAAELLSYKSGEIVELLERWGALFNRQPDGRVALRYFGGQT--------YPRTRFVGDKTGMALLHTLYERTSGLNVDFY  154 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC--------CCEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             99999999899999999983998652899988443347755--------1335742887668999999999862997899


Q ss_pred             CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r  173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF  252 (611)
Q Consensus       173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf  252 (611)
                      .++.+++||++ +|+|+||+++|.++|+++.|+||+|||||||++++|..+||++.+||||++||++|||.|+||||+||
T Consensus       155 ~~~~~~~Ll~~-~~~v~Gav~~d~~~~~~~~~~AkaVVLATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfvQf  233 (566)
T PRK06452        155 NEWFAWDLVRD-EKRVAGVVAMDMRSMEPFFFKAKAVVIASGGMGMLYRHTTNSYINTGDGYGMALRAGVALKDPEFVQF  233 (566)
T ss_pred             EEEEEEEEEEC-CCEEEEEEEEECCCCEEEEEECCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
T ss_conf             87899998853-98688999997689959999818899917851344325679987606999999983998579578604


Q ss_pred             CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf             88844220143045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r  253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV  332 (611)
Q Consensus       253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~  332 (611)
                      |||+++++++|++|++||+|++|+|.+|+|||++|+|...|++|||+++++|+.|+++|+|++.  ..||+|++|++++.
T Consensus       234 hPt~~~~~~~l~~e~~rg~G~~l~n~~Gerf~~~y~p~~~elaprdvv~rai~~e~~~g~g~~~--~~v~ld~~~~~~~~  311 (566)
T PRK06452        234 HPTALYPSDILISEAARGEGAILKNNKGERFMTRYAPKKLDLAPRDIVSRAITTEIKEGRGFPG--GYVGLDLTHLGEDY  311 (566)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CEEEEEHHHCCHHH
T ss_conf             6653157883222021367507756798682021076646556187988999999986479988--63341442079999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r  333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS  412 (611)
Q Consensus       333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg  412 (611)
                      ++++|+.+.+.++.+.|+|+.++||||.|++||+||||+||.+++         .|+||||||||||+|+|+||||||||
T Consensus       312 ~~~~~~~~~~~~~~~~giD~~~~~ipv~P~~Hy~mGGi~id~~~~---------~t~I~GLyAaGE~ag~g~HGanRLgg  382 (566)
T PRK06452        312 IKERLALAYEAAKSFAGVDATKEMIPVRPAQHYYMGGIDVDITGR---------NPDLIGLFAAGEAACVSVHGANRLGS  382 (566)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEECCCCC---------CCCCCCCEECCCCCCCCCCCCCCCHH
T ss_conf             987636899999985399865673355366662368824676888---------67776324336755146788886414


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             432222223215677556654202656676400-2357888631010378871368999878876650972687589999
Q gi|254781043|r  413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS  491 (611)
Q Consensus       413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~  491 (611)
                      |||++|+|||++||++|++|++.....+..+.+ ..++.......+...+++.+|.+++++||++||+|+||+|++++|+
T Consensus       383 nsl~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lq~~m~~~~gi~R~~~~L~  462 (566)
T PRK06452        383 NSLLETLVFGRETGRAVVEFLKSETEIPSSDIDKEAEKSLDDAYKYVKSESGVHFGEILEKLRDTMWDYVGIFRDENGLK  462 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHH
T ss_conf             55899999999999999999861688897623465899887788775166888889999999999987469786589999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEE
Q ss_conf             99999999999984151578775458899999988889999999999996262550462353377887666880321356
Q gi|254781043|r  492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKH  571 (611)
Q Consensus       492 ~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h  571 (611)
                      +++++|+.|+++++++.+.|....+|++|++++|++||+.+|+++++|||+|+||||+|||+|||+     |||+||+||
T Consensus       463 ~al~~l~~l~e~~~~~~~~d~~~~~n~el~~~~E~~n~l~~a~~~~~aal~R~ESRG~H~R~DyPe-----~DD~nwlk~  537 (566)
T PRK06452        463 NAVSEIKKLREQMKSMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALNRKESRGAHYRTDYPD-----RDDQNWLKH  537 (566)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCHHHCCE
T ss_conf             999999999999973734786643247899999999999999999999973410454026767799-----867403646


Q ss_pred             EEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             9999846898059999447444256755000027721679
Q gi|254781043|r  572 SLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       572 ~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      ++++++  .+++++.|+||         ++++|+|++|+|
T Consensus       538 ~~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y  566 (566)
T PRK06452        538 TIAYLS--GNTVEITYKPV---------KMTRWKPEARVY  566 (566)
T ss_pred             EEEEEE--CCCCEEEEEEE---------EEEEECCCCCCC
T ss_conf             889981--99006998840---------344408967879


No 14 
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1106.42  Aligned_cols=567  Identities=45%  Similarity=0.718  Sum_probs=524.1

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHCCCCEEEECCC-CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             310588989968999999999988---982999986898852104116534251378-9999999999989984588779
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEK---GFKTACITKVFPTRSHTVAAQGGIAASLAN-MTPDSWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~---G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-~~~Ds~~~~~~Dt~~~g~~l~d   91 (611)
                      .+|||||||||+|||+||++|++.   |++|+|++|.+..+|+|.+|+|||++++.. ...||++.|++||+++|+++||
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~l~d   83 (582)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDFLAD   83 (582)
T ss_pred             EECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             87068999973999999999998538998699997989999708999877998717888999989999999985368888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCE
Q ss_conf             999999999889999999986998132799855100146411456787656407986665426678999999873-1230
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAE  170 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~  170 (611)
                      +++++.++++++++|+||++|||+|.|+++|++.+++||||+        ++|+++++|.||..|+..|.+++++ .+|+
T Consensus        84 ~~lv~~l~~~a~~~v~~le~~Gv~f~r~~~G~~~~~~~gGhs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~gv~  155 (582)
T PRK06069         84 QDAVEVLVREAPEEIRFLDHWGVPWSRDPDGRISQRPFGGMS--------FPRTTFAADKTGFYIMSTLYSRALRFDNIH  155 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCC--------CCEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             999999999899999999976997106899988752158703--------450003678753999999999998469948


Q ss_pred             EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf             31131565200013443012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r  171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV  250 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~  250 (611)
                      ++.++++++||++ +|+|+||+++|.++|+++.|+||+|||||||++++|..+||++++||||++||+++||.|+||||+
T Consensus       156 ~~~~~~vt~Ll~~-~g~v~Ga~~~d~~~G~~~~i~AkaVVlATGG~g~l~~~~t~~~~~TGdg~~~a~~aGA~l~~mEfv  234 (582)
T PRK06069        156 FYHEHFVTSLIVE-NGVFKGVTAIDLRRGEFKVFQAKAGIIATGGAGRLYRFTTYAHSVTGDGLGYALRAGIPLKDMEFV  234 (582)
T ss_pred             EEEEEEEEEEEEC-CCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHH
T ss_conf             9977898888743-998999999976898299998255998988675467877899998868999999769971484267


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCC--CEEEEEECCC
Q ss_conf             32888442201430456655780898326861255407651004752011156889988178888888--7468861117
Q gi|254781043|r  251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSK--DHIHLYLNHL  328 (611)
Q Consensus       251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~--~~v~ld~~~~  328 (611)
                      |||||++.++++|+++++|++|++|+|.+|+|||++|+|...|++|||+++++|+.|+.+|||.....  ..+|+|++|+
T Consensus       235 Q~hPt~~~p~g~l~~e~~rg~G~~l~n~~GerF~~~y~~~~~elaprdvv~~ai~~e~~~grg~~~~~g~~~v~ld~~~~  314 (582)
T PRK06069        235 QFHPTALVPSGILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTECMEGRGFDHESGLCYVGLDLRHL  314 (582)
T ss_pred             HHCCCCCCCCCCEEHHHCCCCCCEEECCCCCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf             51766315776152032016775897469978023208652333636666377899999657967788850689866558


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             98999998537999997643678654406752033100123421577158537788853322760340212203356643
Q gi|254781043|r  329 DPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGAN  408 (611)
Q Consensus       329 ~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGan  408 (611)
                      +++.+++++|.+.+.+..+.|+||.++||||.|++||+||||+||.+++|++..    .|+||||||||||+|+|+||||
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~id~~~~v~~~~----~t~I~GLyAaGE~a~~G~HGan  390 (582)
T PRK06069        315 GEEKINERLPLIRELAKKYAGIDPVTEPIPVRPAVHYTMGGIHTDVRGRVLTAD----GTWVRGLWAAGEAAAVSVHGAN  390 (582)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEECCCEEECCCCEEECCC----CCCCCCCEECCCCCCCCCCCCC
T ss_conf             989997551489999998528886667436650354643780778784772578----8623772114654446556787


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             04764322222232156775566542026566764002---35788863101--03788713689998788766509726
Q gi|254781043|r  409 RLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISS---CDRIMDRFDRL--RHADGHVPTAALREKMQRAMQLDAGV  483 (611)
Q Consensus       409 rlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~g~~~~~~i~~~Lq~iM~~~~gi  483 (611)
                      |||||||++|+|||++||++||+|+......+..+...   .+....++...  .+..+..+|.+++++||++||+|+|+
T Consensus       391 RLggnsl~e~~VfG~iAG~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~im~~~~gi  470 (582)
T PRK06069        391 RLGSNSLAECLVWGRIAGEQAAKYALERPALGEPDGKLVELVEKEEKRIFDKLLKKEVGGESPYEIRRELRDIMEKNVGI  470 (582)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             65541488999989999999999997388878994456778887887766777521679989899999999999835887


Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
Q ss_conf             87589999999999999999841515787754588999999888899999999999962625504623533778876668
Q gi|254781043|r  484 FRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGR  563 (611)
Q Consensus       484 ~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~r  563 (611)
                      +|++++|++++.+|++|+++++++.+.|....||++|++++|++||+.+|+++++|||+|+||||+|||.|||+     |
T Consensus       471 ~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~n~el~~~~E~~~~l~~a~~~~~aal~R~ESRG~H~R~DyP~-----~  545 (582)
T PRK06069        471 FRDESGLAEALKKIKKLRERFKEVRIEDKSRIYNMELKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPK-----R  545 (582)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----C
T ss_conf             88689999999999999999973874776301218999999999999999999999972401555354777798-----8


Q ss_pred             CCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             803213569999846898059999447444256755000027721679
Q gi|254781043|r  564 DDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       564 DD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      ||+||+||++++++  .++++++|+||         .++.|||+.|+|
T Consensus       546 dd~nwl~~~~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y  582 (582)
T PRK06069        546 DDENWLKHTLAYLT--GGGPKITYTPV---------TITKWKPEERKY  582 (582)
T ss_pred             CCCCCCCEEEEEEE--CCCCEEEEEEE---------EEEEECCCCCCC
T ss_conf             77303838999993--89757998853---------266658826879


No 15 
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1111.70  Aligned_cols=561  Identities=33%  Similarity=0.454  Sum_probs=518.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             105889899689999999999889829999868988521041165342513789-9999999999899845887799999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ++||||||||+|||+|||+|++.|++|+|++|.++.+|+|.+||||||+++... .+|||+.|++||+++|+++||+++|
T Consensus         3 ~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~~~~S~~a~gGi~aa~~~~~~~Ds~~~h~~Dt~~aG~~l~d~~~v   82 (589)
T PRK08641          3 KKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTIYGGDFLANQPPV   82 (589)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             68789989869999999999875997799977788988306778779986047999989899999999955787889999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC----CCEE
Q ss_conf             999998899999999869981327998551001464114567876564079866654266789999998731----2303
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN----NAEF  171 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~----gv~i  171 (611)
                      +.+|+++++.|+||++|||+|+|+++|.+.+++||||+        ++|++|++|.||+.|+++|.+++++.    .|++
T Consensus        83 ~~l~~~a~~~i~~Le~~Gv~f~r~~~g~~~~~~~GGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~~  154 (589)
T PRK08641         83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTL--------HHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK  154 (589)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999899999999983980225799887001257703--------6745357886389999999999983456576599


Q ss_pred             ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             11315652000134430124689805870899506724741576565433421064014448878875136533332223
Q gi|254781043|r  172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQ  251 (611)
Q Consensus       172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~q  251 (611)
                      +.++.+++||++++|+|+||+++|.++|+++.|+||+|||||||++++|..+|||+.+||||++||+++||.|.||||||
T Consensus       155 ~~~~~~~~ll~~~~g~v~Gv~~~d~~~g~~~~i~AkaVILATGG~g~ly~~tTN~~~~TGdG~amA~raGA~l~dmEfiQ  234 (589)
T PRK08641        155 YEGWEFLGAVKDDEGRCRGIVAQNLFTMEIESFGADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQ  234 (589)
T ss_pred             EECCEEEEEEECCCCEEEEEEEEECCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEE
T ss_conf             97437889998279969999999888980999951569994688875544667999875199999998498815846145


Q ss_pred             CCCCCCCCCE--EECCCCCCCCCEE-EEECCCCC--CCCCCCCCCCCCCCCCEEHHHHHHHHHH-CCCCCCCCCEEEEEE
Q ss_conf             2888442201--4304566557808-98326861--2554076510047520111568899881-788888887468861
Q gi|254781043|r  252 FHPTGIYGAG--CLITEGARGEGGY-LVNSKGER--FMERYAPSAKDLASRDVVSRCMMMEIRE-GRGVGKSKDHIHLYL  325 (611)
Q Consensus       252 fhPt~~~~~~--~l~~~~~rg~G~~-l~n~~Ger--f~~~y~~~~~el~~rd~~s~ai~~ei~~-g~g~~~~~~~v~ld~  325 (611)
                      ||||++++..  .|++|++||+||+ |+|.+|+|  ||++|+|..++|+|||+++|+|+.++.+ +++ ..+..+||||+
T Consensus       235 fhPT~l~~~~~~~Lisea~RGeGg~ll~~~~g~r~~f~~~~~~~~~~la~Rdvvarai~~~~~~~~~~-~~g~~~v~lD~  313 (589)
T PRK08641        235 IHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLG-INGENMVYLDL  313 (589)
T ss_pred             EEEEEECCCCCCEECCHHHCCCCCEEEECCCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEEC
T ss_conf             65205448887423557552789778305899611011102600101264019999999999983578-78877488541


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r  326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH  405 (611)
Q Consensus       326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h  405 (611)
                      +|++++.+.++||.+.+.+.++.|+||.++||||.|++||+||||+||.+++          |+||||||||||+ +|+|
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~D~~~~pi~V~P~~Hy~mGGi~iD~~~~----------T~IpGLyAaGE~a-~g~H  382 (589)
T PRK08641        314 SHKDPKELDIKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQM----------TNIPGLFAAGECD-YSYH  382 (589)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEECCCEEECCCCC----------CCCCCEEECCCCC-CCCC
T ss_conf             1289899998725589999997099964576145434101058767889886----------2368727754445-5667


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-C----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             6430476432222223215677556654202656676-4----0023578886310103788713689998788766509
Q gi|254781043|r  406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSL-D----ISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD  480 (611)
Q Consensus       406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~  480 (611)
                      ||||||||||++|+|||++||++|++|++........ +    .....+..+++..+...++..++.+++++||++||++
T Consensus       383 GaNRLggNSLle~~VfG~~Ag~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~m~~~  462 (589)
T PRK08641        383 GANRLGANSLLSAIYGGMVAGPNAIRYIKGLGKSADDMPSSIFEQALKQEQEKFDRILSMDGTENAYVLHKELGEWMTDN  462 (589)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             75544310499999989999999999997468875558856777788888988887750578888899999999999862


Q ss_pred             CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf             72687589999999999999999841515787754588999999888899999999999962625504623533778876
Q gi|254781043|r  481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEF  560 (611)
Q Consensus       481 ~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~  560 (611)
                      +||+|++++|++++++|++|+++++++.+.|....+|++|++++|++||+++|+++++|||+|+||||+|||+|||+   
T Consensus       463 ~gi~R~~~~L~~al~~l~~l~e~~~~i~~~d~~~~~n~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~H~R~DyP~---  539 (589)
T PRK08641        463 VTVVRENKKLLETDEKIKELMERYKRISVNDTSRWSNQGAHFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPE---  539 (589)
T ss_pred             CCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC---
T ss_conf             63761789999999999999999863887775212126689999999999999999999860622516437667899---


Q ss_pred             CCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             668803213569999846898059999447444256755000027721679
Q gi|254781043|r  561 GGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       561 ~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                        |||+||||||+++++++.+++++.|+||         +++.|+|++|+|
T Consensus       540 --rdD~~wlkht~~~~~~~~~~~~~~~~pv---------~~~~~~p~~R~Y  579 (589)
T PRK08641        540 --RDDEEWLKTTMAKYQGEGEEPEFTYEDV---------DTSLIPPRKRDY  579 (589)
T ss_pred             --CCCHHHHHHEEEEECCCCCCCEEEEECC---------CEEEECCCCCCC
T ss_conf             --8635466456357637898642775235---------314678721556


No 16 
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884   In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B.   In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein.   The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species .    The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=100.00  E-value=0  Score=1092.96  Aligned_cols=559  Identities=43%  Similarity=0.703  Sum_probs=527.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             105889899689999999999889--829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      +.|++|||+|.|||+|||+++|.+  ++|.||+|..++||||++|.||-+|+..  ++||.+.|+.||+.+|+|||+||.
T Consensus         3 ~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSKVYPMRSHTVaAEGGsAAV~~--D~DSld~H~~DTV~GGDWLC~QD~   80 (585)
T TIGR01176         3 QADIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTK--DDDSLDEHFHDTVSGGDWLCEQDV   80 (585)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCCCEEECC--CCCCHHHHCCCCCCCCCCCCCHHH
T ss_conf             323678837844689999998408985378985115776411113553112105--641245414453456643220218


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEEC
Q ss_conf             9999998899999999869981327998551001464114567876564079866654266789999998731-230311
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFI  173 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~  173 (611)
                      |++|+.++|..+-.||.||+||+|.+||....|+|||+.        ..|++|++|+||.-|+++|.+..++. .|..++
T Consensus        81 Ve~FV~~ap~E~~QlE~WGCPWSRk~dG~V~VR~FGGMK--------~~RTWFAADKTGFH~LHTLFQ~~l~y~~i~R~D  152 (585)
T TIGR01176        81 VEYFVAEAPKELVQLEHWGCPWSRKPDGRVNVRRFGGMK--------VERTWFAADKTGFHLLHTLFQTSLKYPQIKRYD  152 (585)
T ss_pred             HHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCC--------CCCEEECCCCCCHHHHHHHHHHHCCCCCCEEHH
T ss_conf             999874133456643127888774789857762268812--------210010112234268899998630563310001


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             31565200013443012468980587089950672474157656543342106401444887887513653333222328
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH  253 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfh  253 (611)
                      ++++++||+| ||+|+|.|++++.+|++..|+|++|||||||+||+|.++||....||||++||+++|+.|+||||||||
T Consensus       153 E~F~~~lLVD-dG~v~GLvAi~~~~G~l~~I~A~aVvlaTGGaGRVy~~~TN~~I~TGDGMa~A~~~G~PL~DMEFVQYH  231 (585)
T TIGR01176       153 EYFVVDLLVD-DGRVRGLVAIELAEGRLVTIKADAVVLATGGAGRVYRFNTNGGIVTGDGMALAFRHGVPLRDMEFVQYH  231 (585)
T ss_pred             CEEEEEEEEE-CCEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf             0135555751-773555788863367068887427899308987303310588731261489998478883324301006


Q ss_pred             CCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC---------C--CCCCCCCCCEEHHHHHHHHHHCCCCCCC-CCEE
Q ss_conf             88442201430456655780898326861255407---------6--5100475201115688998817888888-8746
Q gi|254781043|r  254 PTGIYGAGCLITEGARGEGGYLVNSKGERFMERYA---------P--SAKDLASRDVVSRCMMMEIREGRGVGKS-KDHI  321 (611)
Q Consensus       254 Pt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~---------~--~~~el~~rd~~s~ai~~ei~~g~g~~~~-~~~v  321 (611)
                      |||++.+|+||||++|+|||+|+|++|-||+.+|.         |  ..+||.|||-+|+|.+.|.++|+.+..+ ++-|
T Consensus       232 PTGLP~tGIL~TE~~R~EGG~l~NK~GYRYLQDY~~G~~TP~G~Pk~k~MELGPRDk~SQAF~HE~~KG~Ti~~P~GdVV  311 (585)
T TIGR01176       232 PTGLPGTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEHRKGNTIDTPYGDVV  311 (585)
T ss_pred             CCCCCCCCHHCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf             88988652100033443776678168741300057778888888753420468865302445746417872258989778


Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf             88611179899999853799999764367865440675203310012342157715853778885332276034021220
Q gi|254781043|r  322 HLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC  401 (611)
Q Consensus       322 ~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~  401 (611)
                      |||||||+++.|+++||.++|+++.|.+|||.+|||||+|++||+||||.+|.+          ++|.||||||+|||||
T Consensus       312 yLDLRHLG~~~l~~~LPFi~ELak~Y~~vDPv~E~iPvRP~vHY~MGGi~Td~~----------c~T~~~GLfA~GE~as  381 (585)
T TIGR01176       312 YLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDIN----------CETRIKGLFAVGECAS  381 (585)
T ss_pred             EEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEECCC----------CCCCCCCEEECCCCEE
T ss_conf             850044237887520735789988632668732453688602433065445787----------6411463344022013


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC---CC-CCHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHH
Q ss_conf             335664304764322222232156775566542026566---76-40023578886310103788--7136899987887
Q gi|254781043|r  402 ASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIP---SL-DISSCDRIMDRFDRLRHADG--HVPTAALREKMQR  475 (611)
Q Consensus       402 ~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~g--~~~~~~i~~~Lq~  475 (611)
                      .|+|||||||||||.|.+|||++||+.|++++.......   +. ..++......|+..+.+++|  +++++.||.+||.
T Consensus       382 V~l~GANRLGSNSLaEl~VFG~~AG~~A~~~AA~~~~~~rGp~~Ai~AQ~~~~~~Rl~~~~~~~G~GgE~~A~IR~~M~~  461 (585)
T TIGR01176       382 VGLHGANRLGSNSLAELVVFGRLAGEKAAERAARAKKSNRGPESAIRAQARTVELRLERLLSQEGQGGENWADIRAEMGA  461 (585)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             31135342430036789998776678999999862367778789999999999999999986258886516688899988


Q ss_pred             HHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
Q ss_conf             66509726875899999999999999998415157877545889999998888999999999999626255046235337
Q gi|254781043|r  476 AMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF  555 (611)
Q Consensus       476 iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~Dy  555 (611)
                      .|...|||+|+++-|++++++|..|+|+|+++.+.|++++||++|+..+||..+|++|++|+.|+|.|+||||+|.|.|+
T Consensus       462 t~E~~~GIYR~~~~~~~~i~~l~~L~ERf~~~~I~D~s~~FNT~L~~~~El~~~LdVA~a~v~Sa~~R~ESRGAHQR~D~  541 (585)
T TIGR01176       462 TLESGCGIYRDEELLQKTIDKLAELQERFKRVGIDDKSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDE  541 (585)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             89850774468267999999999865422266562055210178998987403047999998631033124651013568


Q ss_pred             --CCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             --78876668803213569999846898059999447444256755000027721679
Q gi|254781043|r  556 --KDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       556 --Pe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                        ||     |||++||+||++.++ +++.+++.|-||         +++++||..|.|
T Consensus       542 GC~~-----RDD~~FL~HtL~f~~-~d~T~r~~Y~pV---------~IT~~~P~~RvY  584 (585)
T TIGR01176       542 GCTE-----RDDVHFLKHTLAFRE-SDGTLRVEYSPV---------KITRLPPKERVY  584 (585)
T ss_pred             CCCC-----CCHHHHHHHHHHEEC-CCCEEEEEECCE---------EEECCCCCCCCC
T ss_conf             8887-----335788665331021-788124110120---------674258644578


No 17 
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1067.44  Aligned_cols=552  Identities=37%  Similarity=0.595  Sum_probs=503.3

Q ss_pred             CEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCC
Q ss_conf             13323105889899689999999999889829999868988521041165342513789-99999999998998458877
Q gi|254781043|r   12 TYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLG   90 (611)
Q Consensus        12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~   90 (611)
                      ++-.++|||||||||+|||+||++|+++|++|+||+|..+.+|+|.+|+|||++++++. +.|||+.|++||+++|+++|
T Consensus         3 ~~~~~e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~~~~s~~A~GGi~a~~~~~~~~Ds~e~h~~Dtl~~G~~l~   82 (631)
T PRK07803          3 EVERHEYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFGDTMRGGKFLN   82 (631)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             65531059899996499999999998769987999789999865367657676440689999899999999998627888


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH----
Q ss_conf             9999999999889999999986998132799855100146411456787656407986665426678999999873----
Q gi|254781043|r   91 DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK----  166 (611)
Q Consensus        91 d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~----  166 (611)
                      |+++|+.+++++++.|+||++||++|+|+++|.+.++.||||+        ++|++|++|+||..|+++|.+++..    
T Consensus        83 d~~~v~~l~~~a~~~v~~Le~~Gv~f~r~~dG~~~~~~~GGhs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~~  154 (631)
T PRK07803         83 NWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHT--------YPRLAHVGDRTGLELIRTLQQKIVSLQQE  154 (631)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999999999985997544899877210168865--------65001127875699999999999973013


Q ss_pred             ---------CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHH
Q ss_conf             ---------12303113156520001344301246898058708995067247415765654334210640144488788
Q gi|254781043|r  167 ---------NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMV  237 (611)
Q Consensus       167 ---------~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA  237 (611)
                               .+|+++.++.+++|++| +|+|+||++++.++|+++.|+||+|||||||++++|..+||++.+||||++||
T Consensus       155 ~~~~~~~~~~~i~v~~~~~v~~Ll~d-~g~v~Ga~~~~~~~g~~~~~~AkaVVLATGG~g~~f~~ttn~~~~TGDG~amA  233 (631)
T PRK07803        155 DKAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALA  233 (631)
T ss_pred             HHHHHHCCCCCEEEEECCEEEEEEEE-CCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             44443203467389933288999986-99999999998789829999625699867767635645689998775999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCC----CEEECCCCCCCCCEEEEECCCCCCCCCCCCC-----------------------
Q ss_conf             7513653333222328884422----0143045665578089832686125540765-----------------------
Q gi|254781043|r  238 ARAGLPLQDMEFVQFHPTGIYG----AGCLITEGARGEGGYLVNSKGERFMERYAPS-----------------------  290 (611)
Q Consensus       238 ~~aGa~l~~mEf~qfhPt~~~~----~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~-----------------------  290 (611)
                      +++||.|.||||||||||++..    .++|++|++||+|++|+|++|+|||++|.|.                       
T Consensus       234 ~raGA~l~dmEfiQfhPTg~~~pp~~~g~Li~E~~RG~GgiL~n~~GeRFm~~y~p~~~~~~~~~~~~~~~~~~~~~~~~  313 (631)
T PRK07803        234 LRAGATLINMEFVQFHPTGMVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPPVFKGQYAETEEEADQWLKDNDSA  313 (631)
T ss_pred             HHCCCCCCCCEEEEEEEEEECCCCCCCCEECCHHHCCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             98599806977452465000258775623402644576778889998840443085666655422023443320133122


Q ss_pred             --CCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf             --10047520111568899881788888887468861-117989999985379999976436786544067520331001
Q gi|254781043|r  291 --AKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYL-NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNM  367 (611)
Q Consensus       291 --~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~-~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~  367 (611)
                        ..+|+|||+++++|+.|+++|||++.+  .||||+ +|++++.++++||.++..+....|+|+.++||||.|++||+|
T Consensus       314 ~~~~~l~prd~varai~~ei~~Grg~~~~--~v~lD~~~~~~~e~i~~~~p~~~~~~~~~~giD~~~~pi~V~P~~Hy~m  391 (631)
T PRK07803        314 RRTPDLLPRDEVARAINSEVKAGRGTPHG--GVYLDIASRLPPEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVM  391 (631)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CEEEEHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCCEEEE
T ss_conf             23201375899999999999966899888--6676143107989998758469999998639986456332366552653


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             23421577158537788853322760340212203356643047643222222321567755665420265667640023
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSC  447 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~  447 (611)
                      |||+||.+         +.+|+||||||||||+ +|+|||||||||||++|+|||++||++|++|++.....+..+.+.+
T Consensus       392 GGi~vd~~---------~~~t~IpGLyAaGEva-gGvHGaNRLggNSLle~lVfGr~AG~~Aa~~~~~~~~~~~~~~~~~  461 (631)
T PRK07803        392 GGIEVDPD---------TGAATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRALSSRPAVSDEAV  461 (631)
T ss_pred             CCEEECCC---------CCCEECCCCEECCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             68067278---------8834279843346435-6767665430357888899899999999999861677889997999


Q ss_pred             HHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             5788863101037---8871368999878876650972687589999999999999999841515787754588999999
Q gi|254781043|r  448 DRIMDRFDRLRHA---DGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETL  524 (611)
Q Consensus       448 ~~~~~~~~~~~~~---~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~  524 (611)
                      +....++..+++.   .+..+|+.++++||++||+|+||+|++++|++++++|+.|+++++++.+++ ...||++|..++
T Consensus       462 ~~~~~~~~~p~~~~~~~~~~~p~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~n~~~~~al  540 (631)
T PRK07803        462 DAAARLALAPFEGPADGGAENPYTLQMDLQQVMNDLVGIIRKEDEISQALEKLAELKERYKNVKVEG-HRQFNPGWHLAI  540 (631)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHCHHHHHHH
T ss_conf             9999998604430146787788999999999998478889878999999999999999976077686-311256789999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEEEEE----CCCCEEEEEEECCC
Q ss_conf             88889999999999996262550462353377887666880321356999984----68980599994474
Q gi|254781043|r  525 ELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVD----WNTGKIKLDYRPVH  591 (611)
Q Consensus       525 el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~~~~----~~~g~~~~~~~Pv~  591 (611)
                      |++||+.+|+++++|||+|+||||+|||+|||+     ||| +|+||+++...    .+.+++.+..+|..
T Consensus       541 el~nml~~a~~~~~aAL~R~ESRG~H~R~D~P~-----~D~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (631)
T PRK07803        541 DLRNMLLVSECVARAALERTESRGGHTRDDHPG-----MDP-EWRRILLVCRAAGSDPVGPEVTVTRQPQP  605 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCH-HHHCEEEEEEECCCCCCCCEEEEEECCCC
T ss_conf             999999999999999871743654267878788-----794-24325799984378887870588757789


No 18 
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00  E-value=0  Score=1025.94  Aligned_cols=524  Identities=38%  Similarity=0.608  Sum_probs=485.5

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             3105889899689999999999889829999868988521-041165342513789999999999989984588779999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH-TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~-s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      .++||||||||+|||+||++|++.| +|+|++|..+.+|+ |.+|+|||+++++  ++||++.|++||+++|.+++|+++
T Consensus         6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~sG~s~~a~gg~~a~~~--~~Ds~e~~~~Dt~~~g~~l~d~~l   82 (539)
T PRK06263          6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGKSGCTVMAEGGYNAVLN--PEDSFEKHFEDTMKGGAYLNDPKL   82 (539)
T ss_pred             EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHHEEECC--CCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf             9649899995399999999998259-9799977898999847888667715089--999999999999985268888999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                      |+.++++++++|+||++||++|+++++|.+.+++|+||+        .+|++|+++.||+.|+..|.+++++.+|+++++
T Consensus        83 v~~l~~~a~~~v~~L~~~G~~f~~~~~g~~~~~~~gg~s--------~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~  154 (539)
T PRK06263         83 VEILVKEAPKRLKDLEKFGAVFDRTEDGEIAQRPFGGQS--------FNRTCYAGDRTGHEMMMGLMEYLIKERIKILEE  154 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             999999999999999983998512799867310047854--------443223577661999999999986169779951


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             15652000134430124689805870899506724741576565433421064014448878875136533332223288
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP  254 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhP  254 (611)
                      +.+++||++++|+|+||+++|.++|+++.|+||+|||||||++++|..+|||.++||||++||+++||+|.||||+||||
T Consensus       155 ~~~~~Ll~~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ly~~~tn~~~~TGdG~~mA~raGA~l~~mEfvQfhP  234 (539)
T PRK06263        155 VMAIKLLVDELGKVFGAVFLDLRNGDIVPIYAKSTILATGGAGQLYPITSNPIQKTGDGFAMAYRAGAELIDMEMVQFHP  234 (539)
T ss_pred             EEEEEEEECCCCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHEEEC
T ss_conf             59999998179969999999778982999960569989898765687767999967299999998699726961530565


Q ss_pred             CCCC----CCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf             8442----201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r  255 TGIY----GAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP  330 (611)
Q Consensus       255 t~~~----~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~  330 (611)
                      |++.    +.++|+++++|++|++|+|++|||||++|+|..+|++|||+++++|+.|+.+|++++.+  +||+|++|+++
T Consensus       235 t~~~~~~~~~g~l~~e~~rg~Gg~l~n~~GerF~~~y~p~~~el~~rd~v~~ai~~e~~~grg~~~~--~v~ld~~~l~~  312 (539)
T PRK06263        235 TGMVYPYSGRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTPHG--GVYLDVTHLPD  312 (539)
T ss_pred             CEECCCCCCCCEEECHHHCCCCCEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CEEEECCCCCH
T ss_conf             6104688886416326451688689616984801021653122332459999999999966788888--45755403998


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r  331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL  410 (611)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl  410 (611)
                      +.+++++|.+.+.+..+ |+||.++||||.|++||+||||+||.+++          |+||||||||||+ +|+||||||
T Consensus       313 e~~~~~~~~~~~~~~~~-giD~~~~~i~v~P~~h~~mGGi~id~~~~----------t~I~GLyAaGE~a-gG~hGanRl  380 (539)
T PRK06263        313 EVIEEKLETMLSQFLDV-GVDIRKEPMEVAPTAHHFMGGIKINEDCE----------TNIPGLFACGEVA-GGVHGANRL  380 (539)
T ss_pred             HHHHHHHHHHHHHHHHH-CCCCCCCCEEEECCCCEECCCEEECCCCC----------CCCCCEEECCCCC-CCCCCCCCC
T ss_conf             99875408999999983-88876784588457774039989998876----------0578737756645-476889886


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r  411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL  490 (611)
Q Consensus       411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L  490 (611)
                      |||||++|+|||++||++|++|++.... +..+.+..+...+++..+.. ++..+|.+++++||++||+|+|++|++++|
T Consensus       381 ggnsl~e~~VfG~~Ag~~Aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L  458 (539)
T PRK06263        381 GGNALADTQVFGARAGKSAAKNAENEKD-ISKDYDQVEEEIERLESYIS-NGGINPYDLRDELKKTMWDYVGIVRDEKGL  458 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCEEECHHHH
T ss_conf             0247788899999999999987650787-68996788999999864423-589998999999999998489979989999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCE
Q ss_conf             99999999999998415157877545889999998888999999999999626255046235337788766688032135
Q gi|254781043|r  491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRK  570 (611)
Q Consensus       491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~  570 (611)
                      +.++.+|+.|+++  .+.+.+.     ++|++++|++||+.+|+++++|||+|+||||+|||.|||+     |||+||+|
T Consensus       459 ~~al~~l~~l~~~--~~~~~~~-----~~l~~~~E~~~~l~~a~~~~~aal~R~ESRG~H~R~DyP~-----~dd~~w~~  526 (539)
T PRK06263        459 KTALEKINELKEK--NLKINGI-----VDFSDKLELENMILVAELVVKSALLRKESRGAHYRTDYPE-----TNDEEPFG  526 (539)
T ss_pred             HHHHHHHHHHHHH--CCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCHHHCC
T ss_conf             9999999999973--4557886-----7899999999999999999999975420212200877899-----98435501


Q ss_pred             EEEEEEEC
Q ss_conf             69999846
Q gi|254781043|r  571 HSLCWVDW  578 (611)
Q Consensus       571 h~~~~~~~  578 (611)
                      ||+++++.
T Consensus       527 ~t~~~~~~  534 (539)
T PRK06263        527 NTVASKNK  534 (539)
T ss_pred             CCEEEECC
T ss_conf             60573068


No 19 
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00  E-value=0  Score=999.56  Aligned_cols=532  Identities=35%  Similarity=0.515  Sum_probs=465.0

Q ss_pred             CEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             13323105889899689999999999889829999868988521041165342513789999999999989984588779
Q gi|254781043|r   12 TYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d   91 (611)
                      +-|.++|||||||||+|||+||+++++ +++|+||+|..+.+|+|.+|+|||++++.  ++||++.|++||+++|+|+||
T Consensus         5 ~~~~~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~~~g~s~~a~GGi~a~~~--~~Ds~e~h~~Dt~kaG~gl~d   81 (556)
T PRK07395          5 TQLPSQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTLKTSASDWAQGGIAAAIA--PDDSPKLHYEDTLKAGAGLCD   81 (556)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHCCCCEEECC--CCCCHHHHHHHHHHHCCCCCC
T ss_conf             458865978999963999999997235-99889998999999626676360517279--999999999999995588888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCE
Q ss_conf             9999999998899999999869981327998551001464114567876564079866654266789999998731-230
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAE  170 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~  170 (611)
                      +++++.++++++++|+||++||++|+|. ++.+.++.++||+        .+|++|++|.||+.|++.|.+++++. +|+
T Consensus        82 ~~~v~~l~~~a~~~i~~L~~~Gv~f~r~-~~~~~~~~~gghs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~  152 (556)
T PRK07395         82 PEAVRFLVEQAPEAIASLVELGVAFDRH-GQHLALTLEAAHS--------RPRVLHAADTTGRAIVTTLTEQVLERPNIE  152 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEC-CCCEEEEECCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             9999999999999999999769970557-9944001216866--------661244577755899999999999679956


Q ss_pred             EECCCEEEEEEECC-CCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCC
Q ss_conf             31131565200013-44301246898058708995067247415765654334210640144488788751365333322
Q gi|254781043|r  171 FFIEYFALDLIINS-EGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEF  249 (611)
Q Consensus       171 i~~~~~~~~Li~d~-dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf  249 (611)
                      ++.++++++|++++ +|+|+|+.++  .+|+++.|+||+|||||||++++|..+|||+.+||||++||+++||.|.||||
T Consensus       153 i~~~~~~~~Ll~~~~~g~v~Gv~~~--~~g~~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~a~A~~aGA~l~dmEf  230 (556)
T PRK07395        153 IISQALALDLWLEPETGRCQGISLL--YQGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEF  230 (556)
T ss_pred             EEEEEEEEEEEEECCCCEEEEEEEE--ECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf             9888999999995589879999999--89969999789899899987112656568988766999999986997589658


Q ss_pred             CCCCCCCCCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf             23288844220---143045665578089832686125540765100475201115688998817888888874688611
Q gi|254781043|r  250 VQFHPTGIYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN  326 (611)
Q Consensus       250 ~qfhPt~~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~  326 (611)
                      +|||||++..+   .+|++|++||+|++|+|++|||||.+|+|. +||+|||+++|+|+.|+.++.+. ....+||||++
T Consensus       231 iQfhPt~~~~~g~~~~lisea~rGeG~~l~n~~GeRFm~~y~~~-~ela~Rdvvsrai~~~~~~~~~~-~~~~~v~ld~~  308 (556)
T PRK07395        231 FQFHPTALTKPGAPRFLISEAVRGEGAHLVDAQGRRFAFDYHPA-GELAPRDVVSRAIFSHLQKTATD-PATAHVWLDLR  308 (556)
T ss_pred             HHEEEEEECCCCCCCEEECHHHCCCCEEEECCCCCCHHHCCCCC-CCCCCCHHHHHHHHHHHHHHCCC-CCCCEEEEECC
T ss_conf             73040045479985245145443787288346886845306876-55573008889999999973899-77775885046


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             17989999985379999976436786544067520331001234215771585377888533227603402122033566
Q gi|254781043|r  327 HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHG  406 (611)
Q Consensus       327 ~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hG  406 (611)
                      |++++.++++||.+.+.+..+ |+||.++||||.|++||+||||.||.+++          |+||||||||||||+|+||
T Consensus       309 ~~~~~~~~~~~p~i~~~~~~~-GiD~~~~~i~V~P~~Hy~mGGi~vd~~~~----------t~i~GLyAaGE~A~~GvHG  377 (556)
T PRK07395        309 PIPPERIRRRFPNIIRVCQKW-GVDVFQEPIPVAPAAHYWMGGVATDLNNQ----------TSIPGLYAVGETASTGVHG  377 (556)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEECCCCEEECCEEECCCCC----------CCCCCEECCCCCCCCCCCC
T ss_conf             689889876627999999984-97644686686356617608889898876----------4668877050435277754


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             43047643222222321567755665420265667640023578886310103788713689998788766509726875
Q gi|254781043|r  407 ANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT  486 (611)
Q Consensus       407 anrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~  486 (611)
                      |||||||||++|+|||+.++..+.............  ....      ......+....+..++++||++||+++||+|+
T Consensus       378 anRLggnsl~e~~Vfg~~aa~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~  449 (556)
T PRK07395        378 ANRLASNSLLECLVFAAQLANLELPPAILADSTPAL--PIIE------FASQWKQEQEQLQEIRQELPRLVWQSAGICRE  449 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHH------HHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             155677779999999999876321134556655444--3022------32212344221999999999999628981567


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf             8999999999999999984151578-------------775458899999988889999999999996262550462353
Q gi|254781043|r  487 QDSLSDGCRNLSCLWDEMADLKVHD-------------RSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARE  553 (611)
Q Consensus       487 ~~~L~~al~~L~~l~~~~~~i~~~d-------------~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~  553 (611)
                      +++|++++++|+.|++++..+.+.+             ....+|.+|..++|++||+.+|+++++|||+|+||||+|||+
T Consensus       450 ~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~E~~nml~~a~~i~~aAL~R~ESRG~H~R~  529 (556)
T PRK07395        450 ADTLQAALAQVEQWQQQLAALPLSQFLANLPPGQTVSLSGPDAEAQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRS  529 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999999999999999872322344430376631002653066899999999999999999999987170024002867


Q ss_pred             CCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECC
Q ss_conf             3778876668803213569999846898059999447
Q gi|254781043|r  554 DFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV  590 (611)
Q Consensus       554 DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv  590 (611)
                      |||+      +|.||+||+++..  +    +.-+.||
T Consensus       530 DyP~------~d~~w~~h~~v~~--~----~~~~~~~  554 (556)
T PRK07395        530 DYPK------SSPNWQVHTLVQG--E----RWWTTPI  554 (556)
T ss_pred             CCCC------CCHHHCCCEEEEC--C----EEEECCC
T ss_conf             8787------8956778308827--8----7663268


No 20 
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00  E-value=0  Score=1000.97  Aligned_cols=514  Identities=35%  Similarity=0.504  Sum_probs=453.5

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      -||+|||||||||+|||+||++|+++ ++|+||+|.++.+|+|.+|+|||+++++  ++||++.|++||+++|+|+|||+
T Consensus         5 ~~~~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~~g~s~~a~gGi~a~~~--~~Ds~e~h~~Dt~~~G~gl~d~~   81 (535)
T PRK09077          5 PEHQCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLSEGSTFYAQGGIAAVLD--ETDSIESHVEDTLIAGAGLCDED   81 (535)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCEEEECC--CCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             87628989999539999999974038-9889997889999727887085388529--99999999999999538988999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE----EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-C
Q ss_conf             9999999889999999986998132799855----1001464114567876564079866654266789999998731-2
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKI----YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-N  168 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~----~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-g  168 (611)
                      +|+.++++++++|+||++|||+|+|+++|..    .+..+|||+        .+|++|++|.||+.|+..|.+++++. +
T Consensus        82 lv~~l~~~a~~~i~~L~~~Gv~f~~~~~~~~~~~~~~~r~gGhs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~  153 (535)
T PRK09077         82 AVRFIAENAREAVQWLIDQGVPFDTDEQPNGEEGYHLTREGGHS--------HRRILHAADATGKAVQTTLVERARNHPN  153 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999849956526776544221001357866--------6755215898689999999999970899


Q ss_pred             CEEECCCEEEEEEECC-----CCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCC
Q ss_conf             3031131565200013-----44301246898058708995067247415765654334210640144488788751365
Q gi|254781043|r  169 AEFFIEYFALDLIINS-----EGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLP  243 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~-----dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~  243 (611)
                      |++++++.+++||+++     +|+|+||+++|..+|+++.|+||+|||||||++++|.++|||+++||||++||++|||.
T Consensus       154 i~~~~~~~~~~Li~~~~~~~~~~~v~Ga~~~d~~~g~~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~amA~raGA~  233 (535)
T PRK09077        154 ITVLERHNAIDLITSDKLGLPGRRVVGAYVWNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCR  233 (535)
T ss_pred             CEEEECEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             78995207889998424456698799899997789938999707699946998545356669998647899999985998


Q ss_pred             CCCCCCCCCCCCCCCC---CEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCE
Q ss_conf             3333222328884422---0143045665578089832686125540765100475201115688998817888888874
Q gi|254781043|r  244 LQDMEFVQFHPTGIYG---AGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDH  320 (611)
Q Consensus       244 l~~mEf~qfhPt~~~~---~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~  320 (611)
                      |.||||+|||||+++.   +++|++|++||+|++|+|++|||||++|+| .+||+|||+++|+|+.|+++ +    +..+
T Consensus       234 l~dmEfiQfhPt~l~~p~~~~~lisea~rgeG~~l~n~~Gerfm~~~~~-~~elapRdvvarai~~e~~~-~----g~~~  307 (535)
T PRK09077        234 VANMEFNQFHPTCLYHPQARSFLITEALRGEGAYLKLPDGTRFMPDFDE-RAELAPRDIVARAIDHEMKR-L----GADC  307 (535)
T ss_pred             CCCCCHHHHCCCEEECCCCCCEEECHHHCCCCCEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHH-H----CCCE
T ss_conf             5782077537764645887763424533476647556887715656787-44322456999999999997-4----9975


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf             68861117989999985379999976436786544067520331001234215771585377888533227603402122
Q gi|254781043|r  321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG  400 (611)
Q Consensus       321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a  400 (611)
                      ||||++|++++.++++||.+++.+.. .|+||.++||||.|++||+||||+||.+++          |+|||||||||||
T Consensus       308 v~lD~~~~~~~~i~~~~p~~~~~~~~-~GiD~~~~~ipV~P~~Hy~mGGi~vD~~~~----------T~I~GLyAaGEva  376 (535)
T PRK09077        308 VYLDISHKPADFIRQHFPTIYARCLE-LGIDITKEPIPVVPAAHYTCGGVMVDLHGR----------TDLDGLYAIGEVS  376 (535)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCCCEECCCEEECCCCE----------ECCCCEEECCCCC
T ss_conf             86021348579987654899999997-299875573688625554038988899964----------1778737645323


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             03356643047643222222321567755665420265667640023578886310103788713689998788766509
Q gi|254781043|r  401 CASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD  480 (611)
Q Consensus       401 ~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~  480 (611)
                      |+|+|||||||||||++|+|||++||++++.............  ..+  ..   ++...+....+...+++||++||++
T Consensus       377 ~~GvHGANRLggnSL~e~~VfG~~A~~~i~~~~~~~~~~~~~~--~~~--~~---~~~~~~~~~~~~~~~~~lr~~m~~~  449 (535)
T PRK09077        377 YTGLHGANRMASNSLLECLVYGRSAAEDIESRLPKAPLPPTLP--AWD--ES---RVTDSDEEVVIQHNWHELRLFMWDY  449 (535)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCH--HH---HCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             2676665312344699999999999999986233456754565--320--22---0357531001345799999999804


Q ss_pred             CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf             72687589999999999999999841515787754588999999888899999999999962625504623533778876
Q gi|254781043|r  481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEF  560 (611)
Q Consensus       481 ~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~  560 (611)
                      +||+|++++|++++.+|+.|++++.......+   .+.   +.+|++||+.+|+++++|||+|+||||+|||.||||   
T Consensus       450 ~Gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~---~~~---~~lel~n~l~~a~~i~~aAl~R~ESRG~H~R~DyPe---  520 (535)
T PRK09077        450 VGIVRTTKRLERALHRITLLQQEIDEYYANFR---VSN---NLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPE---  520 (535)
T ss_pred             CCEEECHHHHHHHHHHHHHHHHHHHHHHHCCC---CCH---HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC---
T ss_conf             78378899999999999999999999863156---776---799999999999999999985111532006857898---


Q ss_pred             CCCCCHHHCEEEEE
Q ss_conf             66880321356999
Q gi|254781043|r  561 GGRDDVNWRKHSLC  574 (611)
Q Consensus       561 ~~rDD~nwl~h~~~  574 (611)
                        |||+ |.+++++
T Consensus       521 --~d~e-~~~~i~~  531 (535)
T PRK09077        521 --LLPE-AGPTILS  531 (535)
T ss_pred             --CCCC-CCCCEEC
T ss_conf             --8986-6876308


No 21 
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288    L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=999.96  Aligned_cols=510  Identities=38%  Similarity=0.572  Sum_probs=454.8

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCHHCCCCEEEECCCCCCC-CHHHHHHHHHHHCCCCCCHH
Q ss_conf             3105889899689999999999889829999868-988521041165342513789999-99999998998458877999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKV-FPTRSHTVAAQGGIAASLANMTPD-SWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~-~~~~g~s~~A~GGi~a~~~~~~~D-s~~~~~~Dt~~~g~~l~d~~   93 (611)
                      +++||+|||||+|||+||+++++++.+|+||+|. +...|+|.||||||++++.+.  | |++.|++||+++|+|+||++
T Consensus         1 ~~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~--DdSi~~Hv~DTL~AGaG~cD~~   78 (546)
T TIGR00551         1 SEADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAET--DDSIDAHVEDTLAAGAGLCDEE   78 (546)
T ss_pred             CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCC--CCCHHHHHHHHHHHCCCCCCHH
T ss_conf             96359997520899999985332686378975875555675200011266303875--5856877899998446788688


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CEEEECCCCCCCCCCCCCCCCEEEEEC-CCCCHHHHHHHHHHHH-HC
Q ss_conf             99999998899999999869981327998----551001464114567876564079866-6542667899999987-31
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAG----KIYQRPFGGHMQNYGEGPPVQRTCAAA-DRTGHAILHTLYGQAL-KN  167 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G----~~~~~~~gg~~~~~~~g~~~~R~~~~~-d~tG~~i~~~L~~~~~-~~  167 (611)
                      .|+.++.++.++|+||.+.||+|+++..|    .+.++.+|||+        ++|++|++ |.||+.|+..|.+++. +.
T Consensus        79 aV~~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS--------~~RI~HA~GDaTGr~~~~~L~~~a~~~p  150 (546)
T TIGR00551        79 AVEFVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHS--------YRRILHAAGDATGREVISTLLKKARSEP  150 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCC--------CCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999853689999998669220267798874431001335667--------7742773576324899999999974377


Q ss_pred             CCEEECCCEEEEEEEC------CCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHC
Q ss_conf             2303113156520001------3443012468980587089950672474157656543342106401444887887513
Q gi|254781043|r  168 NAEFFIEYFALDLIIN------SEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAG  241 (611)
Q Consensus       168 gv~i~~~~~~~~Li~d------~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aG  241 (611)
                      .|+++.+..+.+|+++      .+|+|+|+.+++...+.+.+++|++|||||||+++||.+||||..+||||++||||+|
T Consensus       151 ~~~~~~~~~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g~ly~~TTNp~~stGDGIala~raG  230 (546)
T TIGR00551       151 NVEIIEGEVALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLGKLYSFTTNPKVSTGDGIALAWRAG  230 (546)
T ss_pred             CEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf             62410121444444225024798887999999716787237763010003207732100312388742314689998728


Q ss_pred             CCCCCCCCCCCCCCCCCC-----CEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCC
Q ss_conf             653333222328884422-----014304566557808983268612554076510047520111568899881788888
Q gi|254781043|r  242 LPLQDMEFVQFHPTGIYG-----AGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGK  316 (611)
Q Consensus       242 a~l~~mEf~qfhPt~~~~-----~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~  316 (611)
                      ++|+||||+|||||.++.     +.+|||||+|||||+|++.+|+|||.+|+|. +||+|||||||+|+.+|+++.. ++
T Consensus       231 ~~v~DLEF~QFHPT~L~~~~~GG~~~LitEAvRGEGA~Lvd~~G~Rf~~~~hp~-GeLAPRDiVaRAI~~~m~~~~~-dP  308 (546)
T TIGR00551       231 VEVRDLEFVQFHPTALVKPRVGGRYFLITEAVRGEGAILVDRDGKRFMADVHPR-GELAPRDIVARAIDEEMKKGGK-DP  308 (546)
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCC-CC
T ss_conf             722046342567211137887898764001100387423558886702677888-8767404889999999972287-93


Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEC
Q ss_conf             88746886111798999998537999997643678654406752033100123421577158537788853322760340
Q gi|254781043|r  317 SKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAI  396 (611)
Q Consensus       317 ~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAa  396 (611)
                      ...+||||+++++.|.++.|||.|+..|+. .||||.++||||.|++||+||||.||.|||          |.||||||+
T Consensus       309 tqacVfLD~s~Ie~~~f~~RFP~I~~~c~~-~GID~~~~~IPv~P~AHY~~GGi~vD~~g~----------T~~~GLYAi  377 (546)
T TIGR00551       309 TQACVFLDASGIEDDFFKSRFPTITAKCRG-AGIDIVREPIPVVPAAHYTMGGISVDAYGR----------TTVPGLYAI  377 (546)
T ss_pred             CEEEEEEECCCCCHHHHHCCCCHHHHHHHH-CCCCCCCCCCCCCCCCCEEECCEEECCCCE----------ECCCCEEEE
T ss_conf             406888743588834652127278999985-788755587154466715736788757633----------213430120


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHCCCCCC-CCCCHHHHHHHH
Q ss_conf             2122033566430476432222223215677556654202--6566764002357888631010378-871368999878
Q gi|254781043|r  397 GEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS--SPIPSLDISSCDRIMDRFDRLRHAD-GHVPTAALREKM  473 (611)
Q Consensus       397 Ge~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~i~~~L  473 (611)
                      ||+||+|+||||||.||||+||+|||..|+++++...-..  ... ...  .   ..+.. .....+ .......-+.++
T Consensus       378 GE~A~tGlHGANRLASNSLLEclV~G~~aa~~i~~~~~~~Grs~~-~~~--~---~~~e~-~~~~~~~d~~~Lq~~~~~~  450 (546)
T TIGR00551       378 GEVACTGLHGANRLASNSLLECLVFGLRAARAISRKPPAAGRSDE-SSS--A---LWDEP-RSETPDIDRAELQHKMSEL  450 (546)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HCC--C---CCCCC-EEECCCCCHHHHHHHHHHH
T ss_conf             024306651146777787889987328999998653553366510-026--6---65541-3423775145664576688


Q ss_pred             HHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCC-------CC------CCCCCCCCHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             8766509726875899999999999999998415-------15------7877545889999-99888899999999999
Q gi|254781043|r  474 QRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADL-------KV------HDRSLIWNSDLVE-TLELQNLMINAIATVYS  539 (611)
Q Consensus       474 q~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i-------~~------~d~~~~~n~el~~-~~el~~~l~~Ae~~~~a  539 (611)
                      +.+||+++|++|..+.|+.++.++..+++++.+.       ++      ...+...| |+|+ .+|+.|++++|++|+.|
T Consensus       451 ~~~~w~~aGi~R~~~~L~~a~~~~~~~~~~~~~~ssskl~AHlPedq~~S~~GPGln-efmql~~El~~L~~vA~l~~~s  529 (546)
T TIGR00551       451 RSLLWEAAGIVRLSESLEEALRKLVEVQEEVDELSSSKLLAHLPEDQKVSLSGPGLN-EFMQLLLELRNLLQVAKLVTIS  529 (546)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999997401445578987877899999999987544444212763341326788778-9999999999899999999999


Q ss_pred             HHCCCCCCCCEECCCCC
Q ss_conf             96262550462353377
Q gi|254781043|r  540 AEARKESRGSHAREDFK  556 (611)
Q Consensus       540 al~R~ESRG~H~R~DyP  556 (611)
                      ||+|+||||+|||.|||
T Consensus       530 AL~R~ESRG~H~R~DyP  546 (546)
T TIGR00551       530 ALLREESRGAHYRLDYP  546 (546)
T ss_pred             HHCCCCCCCCCCCCCCC
T ss_conf             75043346765457889


No 22 
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00  E-value=0  Score=991.44  Aligned_cols=553  Identities=55%  Similarity=0.855  Sum_probs=523.8

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC---CCCHHHHHHHHHHHCCCC
Q ss_conf             33231058898996899999999998898299998689885210411653425137899---999999999899845887
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT---PDSWQWHLYDTIKGSDWL   89 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~---~Ds~~~~~~Dt~~~g~~l   89 (611)
                      .+.++|||||||+|+|||+||++|++.|++|+|+||.++.||+|.+|+||+++++++..   .|||+.|+.||+++++++
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l   81 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL   81 (562)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             53211698998784888999999996699579997236889853214565302146665456899899999998743676


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CC
Q ss_conf             79999999999889999999986998132799855100146411456787656407986665426678999999873-12
Q gi|254781043|r   90 GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NN  168 (611)
Q Consensus        90 ~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~g  168 (611)
                      +||++++.||+++|++|+||++||+||+|+++|.+++|+|+||+.        +|+++++++||+.|++.|++++++ .+
T Consensus        82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~--------~rt~~~~~~tG~~ll~~L~~~~~~~~~  153 (562)
T COG1053          82 GDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSK--------PRTCFAADKTGHELLHTLYEQLLKFSG  153 (562)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             789999999986379999999808975447876600234688888--------763225666758999999999876313


Q ss_pred             CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCC
Q ss_conf             30311315652000134430124689805870899506724741576565433421064014448878875136533332
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME  248 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mE  248 (611)
                      +++++++++++|++++++.|.|++++++++|+++.|+||+||+||||++++|..+||+..+||||++|++++||.|.|||
T Consensus       154 ~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme  233 (562)
T COG1053         154 IEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDME  233 (562)
T ss_pred             CHHHCCCEEHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             11110021021223179857889999547884899814648993387447773478754557858999996598213688


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCC--CCCCCCCCCCCCEEHHHHHHHHHHCCCC-CCCCCEEEEEE
Q ss_conf             22328884422014304566557808983268612554--0765100475201115688998817888-88887468861
Q gi|254781043|r  249 FVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMER--YAPSAKDLASRDVVSRCMMMEIREGRGV-GKSKDHIHLYL  325 (611)
Q Consensus       249 f~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~--y~~~~~el~~rd~~s~ai~~ei~~g~g~-~~~~~~v~ld~  325 (611)
                      |+|||||++.+.++|++|++|++||+++|++|+|||++  |+|..++|+|||+++++|+.||.+|+++ .+....+|+|+
T Consensus       234 ~~Q~hpt~~~~~g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~v~ldl  313 (562)
T COG1053         234 FVQFHPTGLVGSGILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYLDL  313 (562)
T ss_pred             CCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf             62364128757642787630257985876861167212356665444578651778999998637874668775678763


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r  326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH  405 (611)
Q Consensus       326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h  405 (611)
                      +|++++.+.+++|.+.+.++.+.|+||.++|+||.|++||+||||++|. ++        +.|.||||||||||+|..+|
T Consensus       314 ~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~-~~--------~~t~i~GLfAaGe~~~~~~h  384 (562)
T COG1053         314 RHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNT-GR--------VETKIPGLFAAGEAAGVSHH  384 (562)
T ss_pred             CCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCC-CC--------CCCCCCCEEEEEEEEECCCC
T ss_conf             3357677764074046676650698855450472032046378842274-43--------55777766863212104336


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             64304764322222232156775566542026566764002357888631010378871368999878876650972687
Q gi|254781043|r  406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFR  485 (611)
Q Consensus       406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R  485 (611)
                      |+||||+|||++|+|||++||..|++|+......+  +.+..++..+++.++...+++.++.+++++||++|+++++|+|
T Consensus       385 GanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R  462 (562)
T COG1053         385 GANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP--PASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFR  462 (562)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             66568866417888887998899999997506898--4267899999999998615898889999999998607864036


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             58999999999999999984151578775458899999988889999999999996262550462353377887666880
Q gi|254781043|r  486 TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD  565 (611)
Q Consensus       486 ~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD  565 (611)
                      +.+.|++++.+|++|+++++++.+.|.+..+|++|.+++|+.|||++|++++.+|+.|+||||+|+|+|||+     |||
T Consensus       463 ~~~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~-----rdD  537 (562)
T COG1053         463 NEEGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPE-----RDD  537 (562)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CCH
T ss_conf             889999999999999977545374360554321245556289899999999999865776777546887775-----647


Q ss_pred             HHHCEEEEEEEECCCCEEEEEEECCCC
Q ss_conf             321356999984689805999944744
Q gi|254781043|r  566 VNWRKHSLCWVDWNTGKIKLDYRPVHT  592 (611)
Q Consensus       566 ~nwl~h~~~~~~~~~g~~~~~~~Pv~~  592 (611)
                      +||+||++++++.   ++++.|+||..
T Consensus       538 ~~w~kht~~~~~~---~~~~~~~~v~~  561 (562)
T COG1053         538 ENWLKHTLASYDK---KPRLEYEPVKI  561 (562)
T ss_pred             HHHHHHHHHHCCC---CCCEEEEECCC
T ss_conf             8999999871488---67423230355


No 23 
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00  E-value=0  Score=966.27  Aligned_cols=490  Identities=34%  Similarity=0.470  Sum_probs=438.4

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             332310588989968999999999988982999986898-8521041165342513789999999999989984588779
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP-TRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~-~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d   91 (611)
                      +.+.++||||||||+|||+||++++++  +|+||+|.+. .+++|.+|||||+++++  ++||++.|++||+++|+|+||
T Consensus         5 ~~~~~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~~~g~ss~~AqGGi~a~~~--~~Ds~e~h~~Dtl~aG~gl~d   80 (507)
T PRK07512          5 LDDLTGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPLGEGASSAWAQGGIAAALG--PDDSPALHAADTLAAGAGLCD   80 (507)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCCCCCCCHHHHCCCEEEECC--CCCCHHHHHHHHHHHCCCCCC
T ss_conf             665369989999669999999983307--8399990588999626675245146069--999999999999996478788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CCCCCHHHHHHHHHHHHHC-CC
Q ss_conf             999999999889999999986998132799855100146411456787656407986-6654266789999998731-23
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-ADRTGHAILHTLYGQALKN-NA  169 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d~tG~~i~~~L~~~~~~~-gv  169 (611)
                      +++|+.+++++++.|+||++|||||+|+++|.+.++.++||+        .+|++|+ +|.||++|++.|.+++++. +|
T Consensus        81 ~~~v~~l~~~a~~~i~~L~~~Gv~F~r~~~G~~~~~~~ggHs--------~~R~~~~~gd~tG~~i~~~L~~~~~~~~~I  152 (507)
T PRK07512         81 EAVARRIAAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHS--------RRRIVHVGGDGAGAAIMRALIAAVRATPSI  152 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             999999999899999999980993644788751145665567--------872787458874369999999999827994


Q ss_pred             EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCC
Q ss_conf             03113156520001344301246898058708995067247415765654334210640144488788751365333322
Q gi|254781043|r  170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEF  249 (611)
Q Consensus       170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf  249 (611)
                      +++.++.+++||++ +|+|+|+++  ..+|+++.|+||+|||||||++++|..+|||+++||||++||+++||.|.||||
T Consensus       153 ~i~~~~~~~~Ll~~-~g~v~Gv~~--~~~g~~~~i~A~aVILATGG~g~ly~~tTn~~~~TGdG~amA~~aGA~l~dmEf  229 (507)
T PRK07512        153 TVLEGAEARRLLVE-DGAVAGVLL--ATAGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVLADPEF  229 (507)
T ss_pred             EEEEEEEEEEEEEC-CCEEEEEEE--ECCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf             49998998887753-880789999--738988999828699888977566776779998673999999985998358458


Q ss_pred             CCCCCCCCCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf             23288844220---143045665578089832686125540765100475201115688998817888888874688611
Q gi|254781043|r  250 VQFHPTGIYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN  326 (611)
Q Consensus       250 ~qfhPt~~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~  326 (611)
                      ||||||++..+   .+|++|++||+|++|+|++|+|||.+| | ..||+|||+++|+|+.|+++|++       ||||++
T Consensus       230 vQfhPt~l~~~~~~~~L~sea~rGeGa~l~n~~G~RFm~~y-~-~~eLa~RDvvarAi~~e~~~g~~-------v~lD~~  300 (507)
T PRK07512        230 VQFHPTALDIGRDPAPLATEALRGEGAILINERGERFMADI-P-GAELAPRDVVARAVFAEIAAGRG-------VFLDAR  300 (507)
T ss_pred             HHHCCCEECCCCCCCCEECHHHCCCCCEEECCCCCCCHHHC-C-CCCCCHHHHHHHHHHHHHHHCCC-------EEEECC
T ss_conf             76177100379985435222101477278777877844216-7-40147077999999999983892-------599766


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             17989999985379999976436786544067520331001234215771585377888533227603402122033566
Q gi|254781043|r  327 HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHG  406 (611)
Q Consensus       327 ~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hG  406 (611)
                      |++.+.+.++||.+.+.+.. .|+||.++||||.|++||+||||+||.+++          |+||||||||||||+|+||
T Consensus       301 ~~~~~~~~~~~p~i~~~~~~-~GiD~~~~~ipV~P~aHy~mGGi~vD~~~~----------T~IpGLyAaGEvA~~G~HG  369 (507)
T PRK07512        301 AALGAHFATRFPTVYAACRS-AGIDPARQPIPVRPAAHYHMGGIAVDADGR----------SSLPGLWAAGEVASTGLHG  369 (507)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCCCEECCCEEECCCCC----------CCCCCCCCCCCCCCCCCCC
T ss_conf             66777775650899999998-099976674466522226369946898887----------0722301046655467665


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             43047643222222321567755665420265667640023578886310103788713689998788766509726875
Q gi|254781043|r  407 ANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT  486 (611)
Q Consensus       407 anrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~  486 (611)
                      |||||||||++|+|||++||++++++.......  .....               ....+....++||++||+++||+|+
T Consensus       370 ANRLggnSLle~~VfG~~ag~~~a~~~~~~~~~--~~~~~---------------~~~~~~~~~~~lr~~m~~~~gi~R~  432 (507)
T PRK07512        370 ANRLASNSLLEAVVFAARVAEDIAGTPAAAARP--LGAEP---------------APALDPADPALLRPIMSRHVGVLRD  432 (507)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCC---------------CCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf             421034678999999999999997531035676--66665---------------6666621199999999837885888


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH
Q ss_conf             89999999999999999841515787754588999999888899999999999962625504623533778876668803
Q gi|254781043|r  487 QDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV  566 (611)
Q Consensus       487 ~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~  566 (611)
                      +++|++++++|+.|+++..                   ++.||+.+|++|++|||+|+||||+|||+|||+     |||+
T Consensus       433 ~~~L~~al~~l~~l~~~~~-------------------~~~~~l~~a~~i~~aAl~R~ESRG~H~R~DyP~-----~d~~  488 (507)
T PRK07512        433 ADGLRRAIRALLPLEAGAG-------------------PAADPATVALLIAVAALAREESRGAHFRTDFPL-----TLPA  488 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCH
T ss_conf             9999999999999997545-------------------445399999999999861511332018767899-----7804


Q ss_pred             HHCEEEEEEEECC
Q ss_conf             2135699998468
Q gi|254781043|r  567 NWRKHSLCWVDWN  579 (611)
Q Consensus       567 nwl~h~~~~~~~~  579 (611)
                       |.+|+++.++..
T Consensus       489 -~~~~~l~~~~~~  500 (507)
T PRK07512        489 -AARRTLTLLDAA  500 (507)
T ss_pred             -HCCEEEEEHHHH
T ss_conf             -507589714468


No 24 
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00  E-value=0  Score=955.02  Aligned_cols=521  Identities=34%  Similarity=0.461  Sum_probs=459.7

Q ss_pred             CCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHC
Q ss_conf             05344133231058898996899999999998898299998689885210411653425137899999999999899845
Q gi|254781043|r    7 LKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGS   86 (611)
Q Consensus         7 ~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g   86 (611)
                      +-..||.-++++||||||||+|||+||++|+++|++|+|++|+++.+|+|.+|+|||+++.. ..+||++.|++||+++|
T Consensus         5 ~~~~~~~~~~~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~~g~s~~a~gGi~a~~~-~~~Ds~e~~~~dt~~~g   83 (533)
T PRK07804          5 LMAPAPGWRDAADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALTATATRYAQGGIAVVLP-DPGDSVDAHVADTLAAG   83 (533)
T ss_pred             CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHEEECC-CCCCCHHHHHHHHHHHC
T ss_conf             56999997622688999964999999999986799889997889999707998687788457-99999999999999853


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CCCCCHHHHHHHHHHHH
Q ss_conf             88779999999999889999999986998132799855100146411456787656407986-66542667899999987
Q gi|254781043|r   87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-ADRTGHAILHTLYGQAL  165 (611)
Q Consensus        87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d~tG~~i~~~L~~~~~  165 (611)
                      +|++||++|+.++++++++|+||++||++|+++++|.+.++.++||+        .+|++|+ +|.||..+++.|.++++
T Consensus        84 ~gl~d~~~v~~l~~~a~~~v~~L~~~G~~f~~~~~G~~~~~~~gGh~--------~~R~~~~~~d~~G~~i~~~l~~~~~  155 (533)
T PRK07804         84 AGLCDPDAVRSIVADGPRAVRELVALGARFDESPPGRWALTREGGHS--------RRRIVHAGGDATGAEVQRALDAAAR  155 (533)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC--------CCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             78789999999999999999999983983654899847777327876--------6535613888618999999999850


Q ss_pred             HCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCC
Q ss_conf             31230311315652000134430124689805870899506724741576565433421064014448878875136533
Q gi|254781043|r  166 KNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQ  245 (611)
Q Consensus       166 ~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~  245 (611)
                        +++++.++.+++||+| ++.|.|+. ....++ +..|+||+|||||||++++|..+|||+++||||++||+++||.|.
T Consensus       156 --~v~i~~~~~~~~ll~d-~~~v~gv~-~~~~~~-~~~i~AkaVILATGG~g~ly~~ttn~~~~TGdG~~mA~~aGA~l~  230 (533)
T PRK07804        156 --MLDIRENHVALDLLHD-GRAVTGVL-VGSPDG-VGAVHAPAVVLATGGLGQLYSATTNPAGSTGDGVALALWAGAAVS  230 (533)
T ss_pred             --CCCEEEEEEEEEEEEC-CCEEEEEE-EEECCC-EEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             --7607950699999806-99899999-984896-799991979986899756675556899966589999998499858


Q ss_pred             CCCCCCCCCCCCCCC-----EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCE
Q ss_conf             332223288844220-----143045665578089832686125540765100475201115688998817888888874
Q gi|254781043|r  246 DMEFVQFHPTGIYGA-----GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDH  320 (611)
Q Consensus       246 ~mEf~qfhPt~~~~~-----~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~  320 (611)
                      ||||+|||||+++.+     .+|+++++|++|++|+|++|+|||++|+| .+|++|||+++++|+.++++.     +..+
T Consensus       231 dmEfiQf~Pt~~~~~~~~g~~~l~te~~rg~Ga~l~n~~G~rfm~~~~p-~~ela~rdvv~~ai~~~~~~~-----g~~~  304 (533)
T PRK07804        231 DLEFVQFHPTMLFLGADGGRRPLISEAVRGEGAILVDAQGNSVTAGVHP-LGDLAPRDVVAAAIDARLKAT-----GDPC  304 (533)
T ss_pred             CCCHHHEECCEECCCCCCCCCCEECHHHCCCCEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHC-----CCCE
T ss_conf             9624210043122687666551442212368759977888661014574-333323557789999999852-----9965


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf             68861117989999985379999976436786544067520331001234215771585377888533227603402122
Q gi|254781043|r  321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG  400 (611)
Q Consensus       321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a  400 (611)
                      ||||++|++  .++++||.+...++. .|+||.++||||.|++||+||||+||.+++          |+|||||||||||
T Consensus       305 v~lD~~~~~--~~~~~~p~~~~~~~~-~GiD~~~~~i~V~p~~H~~mGGi~vD~~~~----------T~IpGLyAaGEva  371 (533)
T PRK07804        305 VYLDARHIG--GFARRFPTITASCRA-AGIDPVRQPIPVAPGAHYSCGGVVTDVYGR----------TEVPGLYAAGEVA  371 (533)
T ss_pred             EEEECCCHH--HHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCCCCCCEEECCCCC----------CCCCCCEECCCCC
T ss_conf             775035369--999975799999997-389865661456526640148866788886----------0877846257755


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             03356643047643222222321567755665420265667640023578886310103788713689998788766509
Q gi|254781043|r  401 CASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD  480 (611)
Q Consensus       401 ~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~  480 (611)
                      |+|+|||||||||||++|+|||++||++|++++..... +......           ........+...+++||++||+|
T Consensus       372 ~~G~hGAnRLggnsl~e~~VfG~~Ag~~aa~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~lq~~m~~~  439 (533)
T PRK07804        372 RTGVHGANRLASNSLLEGLVVGGRAGAAAAAHAAAAGR-PRATAAA-----------TGPEPILLPALDRAELQRAMTRG  439 (533)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-----------CCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             47776523477778999999999999999975440577-6667200-----------14455678768999999999848


Q ss_pred             CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf             72687589999999999999999841515787754588999999888899999999999962625504623533778876
Q gi|254781043|r  481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEF  560 (611)
Q Consensus       481 ~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~  560 (611)
                      +|++|++++|++++++|+.++.+..             .....+|+.||+.+|+++++|||+|+||||+|||+||||   
T Consensus       440 ~gi~R~~~~L~~~~~~l~~~~~~~~-------------~~~~~~E~~~~l~~A~~i~~aAL~R~ESRG~H~R~DyPe---  503 (533)
T PRK07804        440 ASVLRDAAGLARLADRLAAAPARVV-------------AGRADWEDTALTLVARALVAAALARTESRGCHHREDFPD---  503 (533)
T ss_pred             CCEEECHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC---
T ss_conf             8699979999999999997455350-------------557669999999999999999861553341017787899---


Q ss_pred             CCCCCHHHCEEEEEEEECCCCEEEEEEECCC
Q ss_conf             6688032135699998468980599994474
Q gi|254781043|r  561 GGRDDVNWRKHSLCWVDWNTGKIKLDYRPVH  591 (611)
Q Consensus       561 ~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~  591 (611)
                        |||+||+||+++++ .+.|++++.++|+.
T Consensus       504 --~dd~~~~~~~~~~~-dd~g~~~~~~~~~~  531 (533)
T PRK07804        504 --TDDEQARSHVVRLA-DDGGAVLVQALAAV  531 (533)
T ss_pred             --CCHHHHHHHEEEEE-CCCCEEEEECCCCC
T ss_conf             --78266440288998-79970899504666


No 25 
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00  E-value=0  Score=954.05  Aligned_cols=498  Identities=37%  Similarity=0.547  Sum_probs=442.9

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      ++||||||||+|||+||++|++. .+|+||+|.++.+|+|.+|+|||+++...  .|||+.|++||+++|+++||+++|+
T Consensus         3 ~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~~~~s~~a~Ggi~a~~~~--~Ds~e~~~~Dt~~aG~gl~d~~~v~   79 (510)
T PRK08071          3 SADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKRNSNSHLAQGGIAAAVAT--YDSPNDHFEDTLVAGCHHNNEEAVR   79 (510)
T ss_pred             CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCCCEECCC--CCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             79999999659999999983658-98799979899997425645443171389--9999999999999637888899999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             9999889999999986998132799855100146411456787656407986-665426678999999873123031131
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-ADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                      .+++++++.|+||++||+||+++++|.+.++.+|||+        .+|++|. +|.||+.|++.|.+++. .+|+++.++
T Consensus        80 ~l~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~ggh~--------~~R~~~~~gd~tG~~i~~~l~~~~~-~~i~i~~~~  150 (510)
T PRK08071         80 YLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHR--------KRRILHAGGDATGKNLLEHLIQEVV-PHVTVVEQE  150 (510)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             9999899999999975996512888645125277516--------8601421776303899999999705-881899747


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             56520001344301246898058708995067247415765654334210640144488788751365333322232888
Q gi|254781043|r  176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT  255 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt  255 (611)
                      .+++||++ ||+|+||+++| .+|+++.|+||+|||||||++++|.++||++++||||++||++|||.|.||||+|||||
T Consensus       151 ~~~~ll~~-dg~v~G~~~~~-~~g~~~~~~AkaVIlATGG~g~ly~~ttn~~~~TGdG~amA~~aGA~l~~mEfiQ~hPt  228 (510)
T PRK08071        151 MVIDLIIE-DGRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDETITGDGLAMAYRAGAELVDLEFVQFHPT  228 (510)
T ss_pred             EEEEEEEE-CCEEEEEEEEC-CCCCEEEEEECEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCC
T ss_conf             98888734-89089999992-89988999827799856886301524558999686899999985997268517754775


Q ss_pred             CCCCCE---EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf             442201---43045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r  256 GIYGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV  332 (611)
Q Consensus       256 ~~~~~~---~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~  332 (611)
                      .++.++   .|++|++||+|++|+|.+|+|||++|+|. +||+|||+++++|+.|+.+|.       +||||+++++.  
T Consensus       229 ~~~~~~~~~~l~~ea~rg~G~~l~n~~G~rf~~~~~~~-~elaprdvvarai~~e~~~g~-------~vyld~~~~~~--  298 (510)
T PRK08071        229 MLYANGRCCGLVSEAVRGEGAVLINEKGQRFMMGIHPL-ADLAPRDVVARAIHEELLSGE-------KVYLNISSIQN--  298 (510)
T ss_pred             CCCCCCCCCEECCHHCCCCCCEEECCCCCCHHHCCCCC-CCCCHHHHHHHHHHHHHHCCC-------EEEECCHHHHH--
T ss_conf             00479852100134201688544667757722135842-110267899999999997389-------15740402599--


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r  333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS  412 (611)
Q Consensus       333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg  412 (611)
                      ++++||.+.+.++. .|+||.+++|||.|++||+||||+||.+++          |+||||||||||||+|+||||||||
T Consensus       299 ~~~~~p~i~~~~~~-~giD~~~~~ipv~p~~Hy~mGGi~vd~~~~----------T~IpGLyAaGEva~~G~HGanRLgg  367 (510)
T PRK08071        299 FEERFPTISALCEK-NGVDIEKKRIPVVPGAHFLMGGVKTNEDGE----------TSIPNLYAIGEVACTGVHGANRLAS  367 (510)
T ss_pred             HHHHHHHHHHHHHH-HCCCCCCCCEEEECCCCCCCCCEEECCCCC----------CCCCCEEEEECCCCCCCCCCCCHHH
T ss_conf             99871359999998-299865773346436560268868998987----------5678879730544277775524366


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf             43222222321567755665420265667640023578886310103788713689998788766509726875899999
Q gi|254781043|r  413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSD  492 (611)
Q Consensus       413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~  492 (611)
                      |||++|+|||++||+++..........+..     +....        ....++...+++||++||+|+|++|++++|++
T Consensus       368 nsl~e~~VfG~~A~~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~  434 (510)
T PRK08071        368 NSLLEGLVFGKRIAEHILTKATNDRLNPFA-----EKEKK--------FIVLNHLPTKEEIQEKMMKYVGIVRTEQSLSE  434 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCHHH--------HCCCCCHHHHHHHHHHHHHCCCEEECHHHHHH
T ss_conf             569999999999999997421466555445-----40122--------10358757999999999828887987999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEE
Q ss_conf             99999999999841515787754588999999888899999999999962625504623533778876668803213569
Q gi|254781043|r  493 GCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHS  572 (611)
Q Consensus       493 al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~  572 (611)
                      ++++|+.+..+....       .+++.+.+.+|+.||+++|+++++|||+|+||||+|||+|||+        .||+||+
T Consensus       435 al~~l~~~~~~~~~~-------~~~~~~~~~~E~~n~l~~a~~i~~aAl~R~ESRG~H~R~DyP~--------~nw~~~~  499 (510)
T PRK08071        435 AKRWLEKYGVRNMIL-------QVDALTNEEIELSNMLTVAKLIVVSALQRTESRGGHYRSDYPH--------RNWVGKE  499 (510)
T ss_pred             HHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------CCCCCCE
T ss_conf             999999624443135-------5240118999999999999999999970122364647678897--------5526566


Q ss_pred             EEEEE
Q ss_conf             99984
Q gi|254781043|r  573 LCWVD  577 (611)
Q Consensus       573 ~~~~~  577 (611)
                      ++..+
T Consensus       500 ~~~~~  504 (510)
T PRK08071        500 IVRTK  504 (510)
T ss_pred             EEEEC
T ss_conf             88637


No 26 
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=949.55  Aligned_cols=498  Identities=39%  Similarity=0.589  Sum_probs=440.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      ||||||||+|||++|+++++. .+|+||+|.+...++|.||||||++++++  +||++.|+.||+++|+|+||++.|+.+
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~--~Ds~~~Hv~DTL~AG~glcD~~aV~~i   85 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSE--DDSPELHVADTLAAGAGLCDEEAVEFI   85 (518)
T ss_pred             CEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCCCCCCHHHCCCEEEEECC--CCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             589988759999999737777-84799957778876236543755766179--998788888899854777869999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEECCCEE
Q ss_conf             99889999999986998132799855100146411456787656407986665426678999999873-12303113156
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFA  177 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~~~~~  177 (611)
                      +.+++++|+||+++||+|+|+++|.+.+..+|||+.        +|++|++|.||++|+.+|.+++++ .+|++++++.+
T Consensus        86 v~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~--------rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a  157 (518)
T COG0029          86 VSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSR--------RRILHAADATGKEIMTALLKKVRNRPNITVLEGAEA  157 (518)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC--------CEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHH
T ss_conf             986899999999739877678887454431013577--------557885687608999999999844899589866223


Q ss_pred             EEEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             520001344-3012468980587089950672474157656543342106401444887887513653333222328884
Q gi|254781043|r  178 LDLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTG  256 (611)
Q Consensus       178 ~~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~  256 (611)
                      ++|++++ + .|+|+.+.+.. ++...|.|++|||||||+|++|.+||||..+||||++||+||||.+.||||+|||||+
T Consensus       158 ~~li~~~-~~~~~Gv~~~~~~-~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~  235 (518)
T COG0029         158 LDLIIED-GIGVAGVLVLNRN-GELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTA  235 (518)
T ss_pred             HHHHHCC-CCEEEEEEEECCC-CEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEECCCCCEEECCCE
T ss_conf             6660247-8347679996489-8179972684899248876312466798666641999999769823576444302642


Q ss_pred             CCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf             4220---1430456655780898326861255407651004752011156889988178888888746886111798999
Q gi|254781043|r  257 IYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVL  333 (611)
Q Consensus       257 ~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~l  333 (611)
                      ++.+   .+|+||++|||||+|+|.+|||||++|+|. .||+|||||||+|+.|++++..      .||||+++++.+++
T Consensus       236 l~~~~~~~~LiSEAVRGEGA~L~~~~GeRFm~~~~p~-~ELAPRDVVARAI~~e~~~~g~------~V~LD~s~~~~~~~  308 (518)
T COG0029         236 LYIPQRRAFLISEAVRGEGAILVNEDGERFMPDYHPR-GELAPRDVVARAIDAEMKRGGA------DVFLDISHIPGDFF  308 (518)
T ss_pred             ECCCCCCCCEEEHHHHCCCCEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCC------EEEEECCCCCCHHH
T ss_conf             2479986530004340676478899878626688973-3335288999999999981598------49996667885045


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             99853799999764367865440675203310012342157715853778885332276034021220335664304764
Q gi|254781043|r  334 QERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSN  413 (611)
Q Consensus       334 ~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggn  413 (611)
                      +++||.++..|+. .||||.++||||.|++||+||||.||.+||          |+||||||+|||||+|+||||||.||
T Consensus       309 ~~rFP~I~~~c~~-~GiD~~r~~IPV~PaaHY~mGGI~vD~~Gr----------Tsi~gLYAiGEvA~TGlHGANRLASN  377 (518)
T COG0029         309 ERRFPTIYAACLK-AGIDPTREPIPVVPAAHYTMGGIAVDANGR----------TSIPGLYAIGEVACTGLHGANRLASN  377 (518)
T ss_pred             HHHCCHHHHHHHH-CCCCCCCCCCCCCCHHHEECCCEEECCCCC----------CCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf             5658489999997-499955685675623624106677778886----------56766577321114566542133446


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf             32222223215677556654202656676400235788863101037887136899987887665097268758999999
Q gi|254781043|r  414 SLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDG  493 (611)
Q Consensus       414 sl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~a  493 (611)
                      ||+||+|||+.|+++++......... ....+..+        .  .....-+..-+++||++||+|+||+|++++|+.+
T Consensus       378 SLLE~vV~g~~aA~~i~~~~~~~~~~-~~~~~~~~--------~--~~~~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~  446 (518)
T COG0029         378 SLLECLVFGKRAAEDIAGRLAPAPRE-APTLPVRD--------D--YEENVLLAHDRHELRRLMWRYVGIVRTAKGLERA  446 (518)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCC--------C--CCCCCCCCCCHHHHHHHHHHHCCEEECHHHHHHH
T ss_conf             58999999999999864135557667-77888655--------5--5620023458888899987632357646789999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEE
Q ss_conf             99999999998415157877545889999998888999999999999626255046235337788766688032135699
Q gi|254781043|r  494 CRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSL  573 (611)
Q Consensus       494 l~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~  573 (611)
                      +..|+.++.+.... ..       .+..+    .|++++|++|+++||.|+||||+|||.|||+.      ++.|..+++
T Consensus       447 ~~~l~~~~~~~~~~-~~-------~~~~~----~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~------~~~~~~~~~  508 (518)
T COG0029         447 IRRLEPLQQENDEY-AN-------FRVSN----RNLALVALLIARAALLRTESRGAHFRLDYPDT------LPEAQRRIL  508 (518)
T ss_pred             HHHHHHHHHHHHHC-CC-------CCCCC----CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------CCCCCCCEE
T ss_conf             99987656554203-55-------44110----48999999999998734023565003668876------723367368


Q ss_pred             EEE
Q ss_conf             998
Q gi|254781043|r  574 CWV  576 (611)
Q Consensus       574 ~~~  576 (611)
                      .+.
T Consensus       509 ~~~  511 (518)
T COG0029         509 VTL  511 (518)
T ss_pred             EEC
T ss_conf             853


No 27 
>KOG2403 consensus
Probab=100.00  E-value=0  Score=941.95  Aligned_cols=598  Identities=64%  Similarity=1.077  Sum_probs=579.6

Q ss_pred             CCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHC
Q ss_conf             05344133231058898996899999999998898299998689885210411653425137899999999999899845
Q gi|254781043|r    7 LKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGS   86 (611)
Q Consensus         7 ~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g   86 (611)
                      -.+.|.++++.||-+|||+|.||+++|+.++|.|.+|.++.|..+.+|++.+||||++|+++++.+|+|++|++||++++
T Consensus        45 ~~~~~~~~~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~s  124 (642)
T KOG2403          45 SDSIYAQVDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGS  124 (642)
T ss_pred             CCCCEEEEEEECEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf             77520343000105899315333466666530673378873242566651364321244432677751455444400232


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             88779999999999889999999986998132799855100146411456787656407986665426678999999873
Q gi|254781043|r   87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK  166 (611)
Q Consensus        87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~  166 (611)
                      +|++||+.+++++.+++..+-+|+.+|+||++.++|+++++.|+|++..+..+....|+++++|+||+.+.+.|+.+.++
T Consensus       125 d~l~dqd~i~ym~~ea~~a~~el~~~g~~f~~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~  204 (642)
T KOG2403         125 DWLGDQDAIHYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLR  204 (642)
T ss_pred             CCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             34674324468774162347888734686565667757776541235676666666617886216660777666777740


Q ss_pred             CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCC
Q ss_conf             12303113156520001344301246898058708995067247415765654334210640144488788751365333
Q gi|254781043|r  167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD  246 (611)
Q Consensus       167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~  246 (611)
                      .+..++.+.++++||+.. |.|.|++++++.+|.++.++++++|+||||+|++|+++|++..+||||.+|++++|+.+.|
T Consensus       205 ~~~~~f~~yfa~dll~~~-g~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d  283 (642)
T KOG2403         205 HNTSFFVEYFALDLLMSQ-GECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSD  283 (642)
T ss_pred             CCHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEEECCCEEECCCCCEEEEECCCCCCC
T ss_conf             104568999999988741-6810799999622642111340069998416627887324706736887477542578766


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf             32223288844220143045665578089832686125540765100475201115688998817888888874688611
Q gi|254781043|r  247 MEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN  326 (611)
Q Consensus       247 mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~  326 (611)
                      |||+|||||++++.|+||+|++|++||+++|..|||||+.|.|...+|++||++||+|..|+++|||+..+.+++||++.
T Consensus       284 ~efvqfhpt~i~g~Gcliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd~~~l~l~  363 (642)
T KOG2403         284 MEFVQFHPTGIYGAGCLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKDHVYLQLS  363 (642)
T ss_pred             CCEEEEEEECCCCCCEEEEECCCCCCCCEEECCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
T ss_conf             53034443224565626653043225501333653323001643011133455565555655742366788786531011


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             17989999985379999976436786544067520331001234215771585377888533227603402122033566
Q gi|254781043|r  327 HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHG  406 (611)
Q Consensus       327 ~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hG  406 (611)
                      |+|++.+++++|.+.+....+.|+|+.++||||.|++||.|||+.++++++|+........+.|||||||||+||.++||
T Consensus       364 h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEaac~svHG  443 (642)
T KOG2403         364 HLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEAACASVHG  443 (642)
T ss_pred             CCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHH
T ss_conf             47724422257885320566741474456655577743544766567866316624666554553402016777776320


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             43047643222222321567755665420265667640023578886310103788713689998788766509726875
Q gi|254781043|r  407 ANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT  486 (611)
Q Consensus       407 anrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~  486 (611)
                      |||||.|||++.+||||..+.+++.-.+.....++..++..++..+.+.+++..++.++..++|.+||+.||++++|+|.
T Consensus       444 ANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~~ld~lr~~~gsi~TselRl~MQksMqnhaaVFR~  523 (642)
T KOG2403         444 ANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVANLDKLRFADGSIRTSELRLEMQKTMQKHAAVFRV  523 (642)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf             21111345667887788877778885188899998788755005888986512567723799999999998633027882


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH
Q ss_conf             89999999999999999841515787754588999999888899999999999962625504623533778876668803
Q gi|254781043|r  487 QDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDV  566 (611)
Q Consensus       487 ~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~  566 (611)
                      ++.|++++.+|.+|..++++++.-|++.+||++|++.+||+|++.||..++.+|++||||||+|.|+|||.     |+|+
T Consensus       524 g~~LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy~~-----R~De  598 (642)
T KOG2403         524 GSVLQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDFPV-----RIDE  598 (642)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCC-----CHHH
T ss_conf             31888877789999867765310135623025689999988899989999888774210245201103641-----0001


Q ss_pred             HHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             213569999846898059999447444256755000027721679
Q gi|254781043|r  567 NWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       567 nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      +|.|||+++++-.+|+.+++||||+...+.+ -+...+||..|+|
T Consensus       599 hWrKHTls~~~~~tg~Vtl~YRpVidkTLde-~~~~tvPPaiRsY  642 (642)
T KOG2403         599 HWRKHTLSYWDVGTGKVTLEYRPVIDKTLDE-AECDTVPPAIRSY  642 (642)
T ss_pred             HHCCCEEEEECCCCCEEEEEEEECCCCCCCH-HHCCCCCCCCCCC
T ss_conf             2001234355278744788873010024754-3347679866779


No 28 
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00  E-value=0  Score=918.00  Aligned_cols=526  Identities=24%  Similarity=0.323  Sum_probs=456.9

Q ss_pred             CEEEEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCH-HCCCCEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             1332310588989968999999999988--982999986898852104-1165342513789999999999989984588
Q gi|254781043|r   12 TYVDHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTV-AAQGGIAASLANMTPDSWQWHLYDTIKGSDW   88 (611)
Q Consensus        12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~-~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~   88 (611)
                      ++-+.+|||||||||+|||+||++|+++  |++|+|++|..+.+|+++ ++++|+++++.. ..|+++.|++||+++|+|
T Consensus         4 ~~~~i~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~~sg~~~~~~~g~~~~~~~-~~~~~e~~~~dt~~ag~g   82 (554)
T PRK08275          4 NTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIP-GHATPEQYTKEITIANDG   82 (554)
T ss_pred             CCEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCC
T ss_conf             6358872889999719999999999986898979999799989881799998888873468-999999999999985389


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             77999999999988999999998699813279985510014641145678765640798666542667899999987312
Q gi|254781043|r   89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN  168 (611)
Q Consensus        89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g  168 (611)
                      +|||++|+.++++++++|+||++||++|+|+++|.+.++.+. |.          +.+.....+|+.+.+.|.+++++.+
T Consensus        83 l~d~~~v~~lv~~a~~~i~~L~~~Gv~f~r~~~G~~~~~~~~-~~----------~~~~~~~~~G~~i~~~l~~~~~~~~  151 (554)
T PRK08275         83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVH-HM----------GSYVLPMPEGHDIKKVLYRQLKRAR  151 (554)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC-CC----------CCEECCCCCHHHHHHHHHHHHHHCC
T ss_conf             877999999999899999999976998773899986001103-67----------7643216986999999999998659


Q ss_pred             CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC------CCC-CCCCCEECCHHHHHHHHHC
Q ss_conf             303113156520001344301246898058708995067247415765654------334-2106401444887887513
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA------YFS-ATSAHTCTGDGAGMVARAG  241 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l------y~~-~t~~~~~tGdG~~mA~~aG  241 (611)
                      |++++++.+++||+++||+|+||+++|.++|+++.|+||+|||||||++++      |.+ +++.+.+||||++||+|||
T Consensus       152 i~i~~~~~~~~Ll~d~dGrv~Ga~~~d~~~g~~~~~~AkaVVLATGG~g~~~~~~~gy~~~t~~~p~~tGdG~amA~raG  231 (554)
T PRK08275        152 VLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAG  231 (554)
T ss_pred             CEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf             96998799999998589939999999447983999933827991576456666765423423379985118999999859


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             65333322232888442201430456655780898326861255407651004752011156889988178888888746
Q gi|254781043|r  242 LPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHI  321 (611)
Q Consensus       242 a~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v  321 (611)
                      |+|.||||+|||||.....+.+.++..++.|++|+|++|||||++|+|.       +.++++|+.|+.+|+|      +|
T Consensus       232 A~l~dmEfiQfhPt~~~~~g~~~~~~~~~~Ga~l~n~~Gerfm~~~~p~-------~~~a~ai~~e~~~g~g------~v  298 (554)
T PRK08275        232 AELANLECFQINPLIKDYNGPACAYVTGPLGGYTANAKGERFIECDYWS-------GQMMWEFYQELQSGNG------PV  298 (554)
T ss_pred             CCCCCCCHHHCCCCCCCCCCCCEEEEECCCCEEEECCCCCEECCCCCCC-------HHHHHHHHHHHHCCCC------CE
T ss_conf             9835843310155424678861013532577089899997004145982-------8899999999964999------68


Q ss_pred             EEEECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCCCEEEEECC-----CCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             8861117989999985--------3799999764367865440675203-----31001234215771585377888533
Q gi|254781043|r  322 HLYLNHLDPAVLQERL--------PGISESARIFAGVDVTRDPIPVIPT-----VHYNMGGIPTNYWGEVLDANSKNPER  388 (611)
Q Consensus       322 ~ld~~~~~~~~l~~~~--------~~~~~~~~~~~g~D~~~~~i~v~p~-----~hy~~GGi~vd~~g~v~~~~~~~~~t  388 (611)
                      |||++|++++.+++..        |... .+....|+||.++|||+.|.     .||+||||+||.+++          |
T Consensus       299 ~ld~~~~~~e~~~~~~~~~~~~~~p~~~-~~~~~~g~D~~~~~i~v~~~~~~~~~~~~mgGI~vD~~~~----------T  367 (554)
T PRK08275        299 FLKLDHLAEETIQTIETILHTNERPSRG-RFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAE----------T  367 (554)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHCCHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC----------E
T ss_conf             9777768999999876443332100799-9998749986668600114776466663575399889986----------5


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             22760340212203356643047643222222321567755665420265667640023578886310103788713689
Q gi|254781043|r  389 FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAA  468 (611)
Q Consensus       389 ~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  468 (611)
                      +||||||||||||+        ++|||++|+|||++||++|++|++.. ..+..+.+..+...+++..+...+.+.+|.+
T Consensus       368 ~I~GLyAaGE~a~~--------g~Nsl~~alV~G~~Ag~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (554)
T PRK08275        368 TVPGLYAAGDMASV--------PHNYMLGAFTYGWFAGENAAEYVAGR-DLPEVDAAQVEAERARVLAPLHREDGLPPAQ  438 (554)
T ss_pred             ECCCCEEECHHHCC--------CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             03544550023335--------55412677887999999999997349-9899997888999999763651568999899


Q ss_pred             HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99878876650972687589999999999999999841515787754588999999888899999999999962625504
Q gi|254781043|r  469 LREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG  548 (611)
Q Consensus       469 i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG  548 (611)
                      ++.+||++||+|+|++|++.+|+.+|++|+.|+++++.+.+.+.     ++|++++|++||+.+|+++++|||+|+||||
T Consensus       439 ~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~-----~el~~~~E~~n~l~~a~li~~aAL~R~ESRG  513 (554)
T PRK08275        439 VEYKLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLERIKARDP-----HELMRALEVRSIRDCAEMAARASLFRTESRW  513 (554)
T ss_pred             HHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999984226324799999999999999999837578993-----8999999999999999999999971883779


Q ss_pred             C--EECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf             6--23533778876668803213569999846898059999447444
Q gi|254781043|r  549 S--HAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTE  593 (611)
Q Consensus       549 ~--H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~  593 (611)
                      +  |||+|||+     |||+||+||++++++ ++|++++.|+||+++
T Consensus       514 ~~~H~R~DyPe-----~dd~~wl~~~~~~~~-~dG~~~~~~~p~~~~  554 (554)
T PRK08275        514 GLYHHRVDFPE-----RNDAEWFCHTHLRKD-EDGRMVSFKRPVEPY  554 (554)
T ss_pred             CCCCCCCCCCC-----CCCHHHCCEEEEEEC-CCCCEEEEEECCCCC
T ss_conf             98857788899-----987434885589998-999989998438889


No 29 
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280   This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=100.00  E-value=0  Score=933.48  Aligned_cols=564  Identities=30%  Similarity=0.438  Sum_probs=519.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             8898996899999999998898299998689-88521041165342513-789999999999989984588779999999
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASL-ANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~-~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      |||||+|+||++||++++|+|.+|-..+-.+ +.|+||++||||||++. ...++||+-.||+||+|+|+|++++.-|+.
T Consensus         1 viVVGtGLaG~~A~~~lae~G~~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v~r   80 (620)
T TIGR01811         1 VIVVGTGLAGGSAAAKLAELGYHVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNVKR   80 (620)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHHHH
T ss_conf             96855653478999999864885125440588762000000266200256567888416653140323533677752789


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH---CC-CEEEC
Q ss_conf             999889999999986998132799855100146411456787656407986665426678999999873---12-30311
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK---NN-AEFFI  173 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~---~g-v~i~~  173 (611)
                      ||+.||+.|+.|.++||||.|+..|.+..|.|||..        +.||+|+...||++|+-++.+++.+   .| |+++.
T Consensus        81 la~~s~~iId~~~a~GvpFaRe~gGlLd~RsFGG~q--------vsRT~Yarg~TGQQLl~~~~~a~~r~~~~G~v~~y~  152 (620)
T TIGR01811        81 LAEISPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ--------VSRTFYARGQTGQQLLLAADSALRRQIAAGTVEKYE  152 (620)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE--------EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             987308999998645884345546630013468600--------012134177627899999999998888627356641


Q ss_pred             CCEEEEEEECCCC---CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf             3156520001344---3012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r  174 EYFALDLIINSEG---CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV  250 (611)
Q Consensus       174 ~~~~~~Li~d~dG---~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~  250 (611)
                      +..++++|+.+++   +|.|+|+.|+.||++..|.|.|||||||||+.+|..|||+..+||..+..+|+.||-..|.+|+
T Consensus       153 ~~e~ld~iv~d~~gek~arGi~arnL~Tge~~~~~adAVilAtGGyg~vF~~sTna~~sna~A~~~~Y~~Ga~fAnp~Fi  232 (620)
T TIGR01811       153 RWEMLDIIVVDGDGEKRARGIIARNLVTGEIETFSADAVILATGGYGNVFYLSTNAMNSNASAAWRAYEQGAYFANPEFI  232 (620)
T ss_pred             CCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCEE
T ss_conf             65168898875887502200121024000000003566898128860222212103442157999998679146367135


Q ss_pred             CCCCCCCCCCE------EECCCCCCCCC-EEEEEC-------------------CCC--CCCCCCCCCCCCCCCCCEEHH
Q ss_conf             32888442201------43045665578-089832-------------------686--125540765100475201115
Q gi|254781043|r  251 QFHPTGIYGAG------CLITEGARGEG-GYLVNS-------------------KGE--RFMERYAPSAKDLASRDVVSR  302 (611)
Q Consensus       251 qfhPt~~~~~~------~l~~~~~rg~G-~~l~n~-------------------~Ge--rf~~~y~~~~~el~~rd~~s~  302 (611)
                      |||||+|+..+      .||||++|++| .+|+.+                   +++  +|+++.+|.+++|.||||.||
T Consensus       233 QiHPT~iP~~~~~QsKl~LMSESlRndGGRiW~pK~~~D~~~~~~~~lrp~~I~e~~rdYfLEr~YP~fGNLVPRDiAsR  312 (620)
T TIGR01811       233 QIHPTAIPVDGEFQSKLTLMSESLRNDGGRIWVPKEKNDDRDANQKKLRPEKIPEDKRDYFLERRYPAFGNLVPRDIASR  312 (620)
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHH
T ss_conf             54672238888622257777465326986472468887431125422564458888885102200777778862247779


Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEECC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf             6889988178888888746886111----798999998537999997643678654406752033100123421577158
Q gi|254781043|r  303 CMMMEIREGRGVGKSKDHIHLYLNH----LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEV  378 (611)
Q Consensus       303 ai~~ei~~g~g~~~~~~~v~ld~~~----~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v  378 (611)
                      +|...|.+++++.++...||||++|    |+.+.|..+|.++.++|+++.|.||++.||.|.|++||||||+|||++   
T Consensus       313 ~i~~~c~~~~gvg~~~~~vYLDf~d~~~RlG~~~~~~kygnl~~~Y~~~~gddPy~~PM~I~PavHYtMGGLwvDYd---  389 (620)
T TIGR01811       313 AIKEVCDAGKGVGPGENAVYLDFSDAIERLGRKEIDAKYGNLFEMYEKITGDDPYKVPMRIYPAVHYTMGGLWVDYD---  389 (620)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEHHHCCHHCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCEEECCCEEEEHH---
T ss_conf             99998864037655443135014430021057889877242888999972687798985126852221685044120---


Q ss_pred             ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCC------CHHHHHHH
Q ss_conf             5377888533227603402122033566430476432222223215677556654202656-6764------00235788
Q gi|254781043|r  379 LDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPI-PSLD------ISSCDRIM  451 (611)
Q Consensus       379 ~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~-~~~~------~~~~~~~~  451 (611)
                             .+|+||||||+|||. -+.|||||||.|||+.+++-|..++-.+..+....... +..+      .....+..
T Consensus       390 -------~mT~~pGLFa~GEc~-fs~HGANRLGAnsLl~a~~dG~~~lP~ti~~~~~~~~~~~~~~~~~P~~~~~~~~~~  461 (620)
T TIGR01811       390 -------LMTTVPGLFAAGECD-FSDHGANRLGANSLLSALADGYFVLPATIENYLGLELSSEDLDEDAPEFEEALAEEQ  461 (620)
T ss_pred             -------CCCCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             -------036887513530167-122453155699998863497576302577553024577767644408999999899


Q ss_pred             HHHHCCCCCC----CC--CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHH
Q ss_conf             8631010378----87--1368999878876650972687589999999999999999841-515787754588999999
Q gi|254781043|r  452 DRFDRLRHAD----GH--VPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMAD-LKVHDRSLIWNSDLVETL  524 (611)
Q Consensus       452 ~~~~~~~~~~----g~--~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~-i~~~d~~~~~n~el~~~~  524 (611)
                      +|+.+++..+    |.  .+++.+|++|.++||++||+.|+.++|++++++|++|+++|.+ |.+++...++|+.+..+.
T Consensus       462 ~r~d~L~~~~pewvG~~v~~~~~~Hr~LG~~m~~~~gv~R~~~~L~~~~~kI~~L~~~f~~~i~i~gt~~e~Nq~l~~a~  541 (620)
T TIGR01811       462 DRLDRLLKMDPEWVGDNVENADKFHRELGEIMWENCGVSRNNEKLLKALEKIEELREEFWKNIDIPGTTKESNQELEFAR  541 (620)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             88888861583205654466678999987887661213661134788999999999998703756887101114678999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC-CCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEE
Q ss_conf             88889999999999996262550462353377887-66688032135699998468980599994474442567550000
Q gi|254781043|r  525 ELQNLMINAIATVYSAEARKESRGSHAREDFKDGE-FGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSK  603 (611)
Q Consensus       525 el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~-~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~  603 (611)
                      +|.++|.||++|+..||.|+||||+|||+|||.+| ++.|||++|++-+.+..+++.++|.++++||         +++.
T Consensus       542 r~~d~l~La~l~~~dAl~R~EScGaHfr~e~~~~DgEA~R~Deef~~~~~w~f~G~~~~p~~~~e~l---------~~e~  612 (620)
T TIGR01811       542 RVADYLELAELMCLDALNRNESCGAHFREEFQTPDGEAERNDEEFLYVAAWEFKGENDAPELHYEEL---------DFEL  612 (620)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCEEECCE---------EEEE
T ss_conf             9998986305310003367656788678666878742244730121110113378898840421553---------6876


Q ss_pred             CCCCCCCC
Q ss_conf             27721679
Q gi|254781043|r  604 IAPKARVY  611 (611)
Q Consensus       604 ~~p~~R~Y  611 (611)
                      ++|++|+|
T Consensus       613 v~p~~R~Y  620 (620)
T TIGR01811       613 VPPRKRDY  620 (620)
T ss_pred             ECCCCCCC
T ss_conf             26766899


No 30 
>PRK06854 adenylylsulfate reductase; Validated
Probab=100.00  E-value=0  Score=888.16  Aligned_cols=544  Identities=24%  Similarity=0.271  Sum_probs=443.1

Q ss_pred             CCCCEEEEEECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCC--CEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             344133231058898996899999999998--89829999868988521041165--34251378999999999998998
Q gi|254781043|r    9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQG--GIAASLANMTPDSWQWHLYDTIK   84 (611)
Q Consensus         9 ~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~G--Gi~a~~~~~~~Ds~~~~~~Dt~~   84 (611)
                      ...++.+++|||||||||+|||+|||+|+|  +|++|+||+|..+.+|+| +|||  |++++++.  +||++.|++|+++
T Consensus         3 ~~~~~~~~~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~~Sg~-~A~G~~~i~a~~~~--~ds~e~~~~~~~~   79 (610)
T PRK06854          3 MNPEVVEVDTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANIDRSGA-VAQGLSAINTYIGE--ENTPEDYVDYVRN   79 (610)
T ss_pred             CCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH-HHHHHHHHHHCCCC--CCCHHHHHHHHHH
T ss_conf             99845788769999997699999999998778999799998999996438-99999999850789--9999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             45887799999999998899999999869981327998551001464114567876564079866654266789999998
Q gi|254781043|r   85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA  164 (611)
Q Consensus        85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~  164 (611)
                      ++.++|||++|+.+++++++.|++|++||++|+|+++|.+..+  +            .|..+   .+|..+...|.+++
T Consensus        80 ~~~gl~d~~~v~~~~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~--g------------~~~~~---~~G~~~~~~l~~~~  142 (610)
T PRK06854         80 DLMGIVREDLVYDLARHVDSSVHLFEEWGLPIWKDDEGKYVRR--G------------KWQIM---INGESYKPIVAEAA  142 (610)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE--C------------CCEEC---CCCHHHHHHHHHHH
T ss_conf             5157845999999999889999999977998650999988733--4------------86663---28899999999999


Q ss_pred             HH-CCCEEECCCEEEEEEECCC--CCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCC---------CCEECCH
Q ss_conf             73-1230311315652000134--4301246898058708995067247415765654334210---------6401444
Q gi|254781043|r  165 LK-NNAEFFIEYFALDLIINSE--GCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATS---------AHTCTGD  232 (611)
Q Consensus       165 ~~-~gv~i~~~~~~~~Li~d~d--G~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~---------~~~~tGd  232 (611)
                      ++ .+|++++++++++||++++  ++|+||+++|+++|+++.|+||+|||||||++++|+++||         |+.+|||
T Consensus       143 ~~~~~i~i~e~~~~~dLl~~~~~~~r~~Ga~~~d~~~g~~~~~~AkaVILATGG~g~ly~~~t~~~~~~~~~~p~~~TGD  222 (610)
T PRK06854        143 KKALADNIYNRVFIVDLLVDDNKPNRIAGAVGFSVRENKFYVFKAKAVIVATGGAVGIYRPRSPGEGRGRAWYPPWNSGS  222 (610)
T ss_pred             HCCCCCEEECCEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf             65799889851687888660897775999999961689189997027998047751310678776567742368877664


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE--------EHHHH
Q ss_conf             8878875136533332223288844220143045665578089832686125540765100475201--------11568
Q gi|254781043|r  233 GAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDV--------VSRCM  304 (611)
Q Consensus       233 G~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~--------~s~ai  304 (611)
                      |++|||||||+|.||| +||||+.+...........+++|++++|.+|||||.+|+|......++++        +.+++
T Consensus       223 G~AmA~rAGA~l~dmE-~qF~p~~~~~~~~p~g~~~~~~~~~l~n~~Ge~fm~~~~~~~~~~~~~~~~~~~~~~~~~~a~  301 (610)
T PRK06854        223 GYAMGIRAGAEMTMME-NRFVPLRFKDGYGPVGAWFLLFKAKAVNAKGEEYETKYAAELKVGKPYGDAGPIPTCLRNHAT  301 (610)
T ss_pred             HHHHHHHHCCCCCCCC-CEECCCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             9999998388755777-012144214774762032124431896689867220675022331344442345356789999


Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH---HHHHHHHHHHCCCCCCCCEEEEECCCCCCCC------CCCCCCC
Q ss_conf             899881788888887468861117989999985---3799999764367865440675203310012------3421577
Q gi|254781043|r  305 MMEIREGRGVGKSKDHIHLYLNHLDPAVLQERL---PGISESARIFAGVDVTRDPIPVIPTVHYNMG------GIPTNYW  375 (611)
Q Consensus       305 ~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~~---~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~G------Gi~vd~~  375 (611)
                      +.|+++|+|.......+++|++|++++.++.+|   |.+...+.. .|+||.++||||.|++||+||      ||+||..
T Consensus       302 ~~e~~~G~g~v~ld~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~-~GiD~~~~~i~V~P~~hy~mGgh~~~gGi~v~~~  380 (610)
T PRK06854        302 IEEMKAGRGPIYMDTEEALQDKHLESEAWEDFLDMTPGQALLWAE-QNIEPEKKNSEIMPTEPYIVGSHSGASGYWVSGP  380 (610)
T ss_pred             HHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             999980799763676541565533178999856776789999987-6998655875342246601344534553387167


Q ss_pred             CEEECC---CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCHHHHHHH
Q ss_conf             158537---78885332276034021220335664304764322222232156775566542026-56676400235788
Q gi|254781043|r  376 GEVLDA---NSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS-PIPSLDISSCDRIM  451 (611)
Q Consensus       376 g~v~~~---~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~  451 (611)
                      +.+...   .+.|.+|+||||||||||||+++|   ||++|++.+    |++||.++++++.... ..+.......+...
T Consensus       381 ~~~~~d~~~~~~n~~T~I~GLyAaGE~ag~~~~---~~~sG~~~~----grlag~sa~e~~~~~~~~~~~~~~~~~~~~~  453 (610)
T PRK06854        381 EDWVPDEYKWGYNRMTTVEGLFAAGDGVGGSPH---KFSSGSHAE----GRIAAKAAVKYILDHKDYKPEIDDDVIEELK  453 (610)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---CCCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             666753011466666656760563233334554---354442363----6999999999997375345566856788788


Q ss_pred             HHHHC--------------CCCCCCCCCHHHHHHHHHHHHHCCCEEEE-----CHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             86310--------------10378871368999878876650972687-----589999999999999999841515787
Q gi|254781043|r  452 DRFDR--------------LRHADGHVPTAALREKMQRAMQLDAGVFR-----TQDSLSDGCRNLSCLWDEMADLKVHDR  512 (611)
Q Consensus       452 ~~~~~--------------~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R-----~~~~L~~al~~L~~l~~~~~~i~~~d~  512 (611)
                      +++.+              +...++..+|.+++.+||++||+|+|++|     ++++|+.++++|+.|+++++++.+.+ 
T Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~M~~y~g~vr~~~~r~~~~L~~al~~l~~l~~~~~~~~~~d-  532 (610)
T PRK06854        454 EEIYKPLENYLEFKDYSTDPDVNPNYISPKQLEERLQKIMDEYAGGISTNYTTNKKMLEIGLELLEMLKEDSEKLAAED-  532 (610)
T ss_pred             HHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf             7652303445441233344334645579999999999999973685046652279999999999999999996166788-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCEECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECC
Q ss_conf             75458899999988889999999999996262550--4623533778876668803213569999846898059999447
Q gi|254781043|r  513 SLIWNSDLVETLELQNLMINAIATVYSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV  590 (611)
Q Consensus       513 ~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESR--G~H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv  590 (611)
                          +++|++++|++|||++|+++++|||+|+|||  |+|||+||||     |||+|||||+++.+++.+++++++++|+
T Consensus       533 ----~~el~~a~El~nml~vAe~i~~aAL~R~ESR~~G~HyR~DyPe-----rDD~nwl~~~~~~~~~~~~e~~~~~~~~  603 (610)
T PRK06854        533 ----LHELLRAWELYHRLLTAEAHIRHILFRKETRWPGYYYRADYPG-----LDDENWHCFVNSKYDPGTGEWTLRKLPY  603 (610)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCEEEEEEECCCCEEEEEEECE
T ss_conf             ----0888999999999999999999998540758888745888898-----7770207177899968997599996363


Q ss_pred             C
Q ss_conf             4
Q gi|254781043|r  591 H  591 (611)
Q Consensus       591 ~  591 (611)
                      +
T Consensus       604 ~  604 (610)
T PRK06854        604 I  604 (610)
T ss_pred             E
T ss_conf             8


No 31 
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00  E-value=0  Score=886.67  Aligned_cols=456  Identities=34%  Similarity=0.518  Sum_probs=399.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      +||||||||+|||+||++|+++|++|+|++|.+ .+|+|.+|||||++++.  +.|||+.|++||+++|+|+|||++|+.
T Consensus         2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~-~~~~s~~A~gGi~~~~~--~~Ds~e~h~~Dt~~~G~gl~d~~lv~~   78 (464)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGS-KDSNSYLAQAGIAFPLL--EGDSIRAHVLDTIRAGKYINDEEVVWN   78 (464)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCHHHHHHHCCEECC--CCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             879998976999999999997499699995899-99514776112064028--999999999999995589888999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf             99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA  177 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~  177 (611)
                      +|+++++.|+||++|||+|++++       .+|||+        ++|++++++.||..|++.|.+++++.+|+++. ..+
T Consensus        79 l~~~a~~~i~~L~~~Gv~f~~~~-------~~GGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~~v~~~~-~~~  142 (464)
T PRK08401         79 VISKSTEAYDFLTSLGVEFTGNE-------LEGGHS--------FPRVFTIKNETGKHLIPILEKHARELGVNFIR-GFA  142 (464)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCC-------CCCCCC--------CCEEEEECCCCHHHHHHHHHHHHHHCCCEEEH-HHH
T ss_conf             99999999999997699887788-------789743--------32026736765899999999999973985786-765


Q ss_pred             EEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             52000134430124689805870899506724741576565433421064014448878875136533332223288844
Q gi|254781043|r  178 LDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI  257 (611)
Q Consensus       178 ~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~  257 (611)
                      ++|+++ ||+|.|+..    +|++  +++|+|||||||++++|+++|||+.+||||++||+++||.|.||||||||||++
T Consensus       143 ~~l~~~-dg~v~Gv~~----~ge~--i~~~aVIlATGG~g~l~~~tt~~~~~tGdg~~~a~~aGa~l~dmEfiQfhPtg~  215 (464)
T PRK08401        143 EELAIK-NGKAYGVFL----NGEL--LKFDAVIIASGGFSGLYKFTAGSPLNLGTLIGDAALKGVPLRDLEFVQFHPTGF  215 (464)
T ss_pred             HHHEEE-CCEEEEEEE----CCEE--EEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCCC
T ss_conf             757022-898999998----8889--885659989998653401357999985099999998598715817876468654


Q ss_pred             CCC-EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             220-1430456655780898326861255407651004752011156889988178888888746886111798999998
Q gi|254781043|r  258 YGA-GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQER  336 (611)
Q Consensus       258 ~~~-~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~  336 (611)
                      +++ .+|++|++||+|++|+|++|||||+       ||+|||+++++|+.|+.+|++       ||||++++  +.++++
T Consensus       216 ~~~~~~LisEa~rg~G~~L~n~~GerFm~-------ela~RDvvsrai~~e~~~g~g-------v~lD~~~i--~~~~~~  279 (464)
T PRK08401        216 IGKRTYLISEAVRGAGAKLVTGDGERFVN-------ELETRDIVARAIYRKMLEGKG-------VFLDATGI--EDFKRR  279 (464)
T ss_pred             CCCCCCEECHHHCCCCCEEECCCCCCHHC-------CCCCHHHHHHHHHHHHHHCCC-------EEECCCCH--HHHHHH
T ss_conf             58886354155415687874777478220-------378577899999999980897-------10257759--999987


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             53799999764367865440675203310012342157715853778885332276034021220335664304764322
Q gi|254781043|r  337 LPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLI  416 (611)
Q Consensus       337 ~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~  416 (611)
                      ||.+++.++. .|+||.++||||.|++||+||||+||.+++          |+||||||||||||+|+|||||||||||+
T Consensus       280 ~p~~~~~~~~-~giD~~~~~i~V~P~~Hy~mGGI~iD~~~~----------T~I~GLyAaGE~a~gGvHGaNRLggNSLl  348 (464)
T PRK08401        280 FPYIYSFLRR-EGIDPSKDLIPVTPVAHYTIGGISVDIFYR----------TGIKGLYAIGEAASNGFHGANRLASNSLL  348 (464)
T ss_pred             HHHHHHHHHH-CCCCCCCCEEEEECCCCEECCCEEECCCCC----------CCCCCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf             4699999998-199966560440356687538988785667----------67786477557445777765311455689


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf             22223215677556654202656676400235788863101037887136899987887665097268758999999999
Q gi|254781043|r  417 DLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRN  496 (611)
Q Consensus       417 ~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~  496 (611)
                      +|+|||++|+++++.....    +...  ..         +...+.   +.. .++||++||+|+||+|++++|++++++
T Consensus       349 e~~VfG~~aa~~~~~~~~~----~~~~--~~---------~~~~~~---~~~-~~~l~~~m~~~~gi~R~~~~L~~al~~  409 (464)
T PRK08401        349 ECIVSGLEVARTISREKPK----REVK--EA---------PYHFYE---LGD-VDSLREILWNHAGIVRDEESLREGLKK  409 (464)
T ss_pred             HHHHHHHHHHHHHHHCCCC----CCCC--CC---------CCCCCC---CCC-HHHHHHHHHHCCCEEECHHHHHHHHHH
T ss_conf             9999999999986440353----4345--56---------555333---457-999999998199999989999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEE
Q ss_conf             999999984151578775458899999988889999999999996262550462353377887666880321356999
Q gi|254781043|r  497 LSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLC  574 (611)
Q Consensus       497 L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~  574 (611)
                      |+.|+.+                       .++..+|++++.|||.|+||||+|||+|||+.     || .|.++++.
T Consensus       410 l~~i~~~-----------------------~~l~l~a~~i~~aAl~R~ESRG~H~R~DyP~~-----~~-e~~~~~~~  458 (464)
T PRK08401        410 LEGVEAD-----------------------PRLKLLARAVLECALAREESRGAHYREDFPFM-----RK-EFERPSFF  458 (464)
T ss_pred             HHHHHHC-----------------------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CH-HHCCCCCC
T ss_conf             9986518-----------------------29999999999999736647766887478999-----74-33578735


No 32 
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00  E-value=0  Score=875.25  Aligned_cols=546  Identities=23%  Similarity=0.284  Sum_probs=464.3

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC-CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             33231058898996899999999998898299998689885210411-65342513789999999999989984588779
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA-QGGIAASLANMTPDSWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A-~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d   91 (611)
                      ..+.+|||||||+|.|||+|||+|+|++++|+|+||.++.|||+.++ .+|+|++.... ..+|+.|+.|+.|+++|+.|
T Consensus         9 ~~~~d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ikRSGaiAaGmdalNaav~pG-~~~PE~yv~~~tk~~DgIvd   87 (894)
T PRK13800          9 ALRLDCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAHVRHSGALAMGMDGVNNAVIPG-KAEPEDYVAEITRANDGIVN   87 (894)
T ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCCCC
T ss_conf             65637787998897268899999760699589985456665205765345787513778-79888999999872366403


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             99999999988999999998699813279985510014641145678765640798666542667899999987312303
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF  171 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i  171 (611)
                      |++++.+++++++.|+.||+||++|.|+++|+|.+|.+- +.      .++.+.+..++.+++.|.+.|+++..+.+|+|
T Consensus        88 qd~v~~~a~~~~~vv~eLE~~Gl~F~KDenG~y~~Rrvh-~~------G~~~l~mp~Ge~iK~iL~r~L~~~~~r~~V~v  160 (894)
T PRK13800         88 QRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVH-RS------GSYVLPMPEGKDVKKALYRVLRQRSMRERIRI  160 (894)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHEECC-CC------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             899999997768999999975984036898786010204-57------85112364433557999999998632006089


Q ss_pred             ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCC-------CCCEECCHHHHHHHHHCCCC
Q ss_conf             11315652000134430124689805870899506724741576565433421-------06401444887887513653
Q gi|254781043|r  172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSAT-------SAHTCTGDGAGMVARAGLPL  244 (611)
Q Consensus       172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t-------~~~~~tGdG~~mA~~aGa~l  244 (611)
                      ++++.+++||++ ||+|+||++|++++|++++|+||+|||||||+|++|.+++       +++.||||||+|+|++||+|
T Consensus       161 ~Nrv~~t~lLt~-dGrv~Ga~gf~irtGe~~virAKAVIlATGgaGrLglP~sGyl~~ty~nP~NtGdGyAMayrAGAeL  239 (894)
T PRK13800        161 ENRLMPVRVLTA-GGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYAMAYHAGAEL  239 (894)
T ss_pred             EEEEEEEEEECC-CCEEEEEEEECCCCCEEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCC
T ss_conf             743457899713-8838888886035663899972779990365555677877740111338877662899999768875


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             33322232888442201430456655780898326861255407651004752011156889988178888888746886
Q gi|254781043|r  245 QDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLY  324 (611)
Q Consensus       245 ~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld  324 (611)
                      +||||.||||++....++++++..+++||+++|++|||||+.           |++|++++.|+..+  ...+.++||||
T Consensus       240 t~~E~~Qi~p~~KD~nGP~c~~vA~g~Ggy~vNa~GERFme~-----------dy~Sgqm~~e~~rE--~~~GrGPvyLd  306 (894)
T PRK13800        240 SGIECFQINPLIKDYNGPACAYVANPFGGYQVNAQGERFVDS-----------DYWSGQMMAEVKRE--IESARGPIYLK  306 (894)
T ss_pred             CCCEEEEEEEEEECCCCCCEEEECCCCCCEEECCCCCEEEEC-----------CCCHHHHHHHHHHH--HCCCCCCEEEE
T ss_conf             782478875211036576403203554506654888754455-----------76679999999987--60689867987


Q ss_pred             ECCCCHHHHHHHHHHHH-------HHHHHHCCCCCCCCEEEEE-----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             11179899999853799-------9997643678654406752-----03310012342157715853778885332276
Q gi|254781043|r  325 LNHLDPAVLQERLPGIS-------ESARIFAGVDVTRDPIPVI-----PTVHYNMGGIPTNYWGEVLDANSKNPERFAPG  392 (611)
Q Consensus       325 ~~~~~~~~l~~~~~~~~-------~~~~~~~g~D~~~~~i~v~-----p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~G  392 (611)
                      ++||++|++++..+-++       .+++...|.|+.+++||+.     ++.+|+|+|+|||.+++          |+|||
T Consensus       307 l~HL~eE~i~~le~iL~~~erPsr~~f~~~rG~dy~~~~VEm~isei~ic~GHsaSGvwVd~~~~----------TtVpG  376 (894)
T PRK13800        307 VSHLPEETLTALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHAR----------TTVPG  376 (894)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCC----------CCCCC
T ss_conf             79999899999998775422750113200368887567741206877345555567547557863----------02565


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             03402122033566430476432222223215677556654202656676400235788863101037887136899987
Q gi|254781043|r  393 LMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREK  472 (611)
Q Consensus       393 LyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~  472 (611)
                      |||||||||.+        +|||++++|||++||++|++|+.+......++.+...++.+++..++++..+.++.+++.+
T Consensus       377 LYAAGDvAcVp--------hNymlga~VfG~~AG~~Aaey~a~~~~~~~l~~d~~~~~~~ri~~pl~r~~G~~~~qVeyk  448 (894)
T PRK13800        377 LYAAGDLACVP--------HNYMIGAFVFGDLAGAHAASTLADVPAPGELPADQLAEAHELIYRPLRHPDGPPQPQVEYK  448 (894)
T ss_pred             CCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCHHHHHHH
T ss_conf             41061002466--------5402555221487768999998468876679768999999985353217889984999999


Q ss_pred             HHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--E
Q ss_conf             88766509726875899999999999999998415157877545889999998888999999999999626255046--2
Q gi|254781043|r  473 MQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS--H  550 (611)
Q Consensus       473 Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~--H  550 (611)
                      ||+.|++|+.++|++.+|+++++++++|++++.++.+.+     ||||++++|+.++++|||++++|+|+|+||||+  |
T Consensus       449 lrr~vndyl~ppK~~~km~~al~~~~~~redi~~~~a~~-----~heLmralEv~~ilDcAEmaarasL~RtESRwglyH  523 (894)
T PRK13800        449 LRRFVNDYVAPPKTAAKLSLAVETFERMRAEIAGMGART-----PHELMRAAEVSFIRDCAEMAARSSLTRTESRWGLYH  523 (894)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999988535788617899999999999999998724788-----289999999989999999999998641020356552


Q ss_pred             ECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCC
Q ss_conf             353377887666880321356999984689805999944744425675500002772167
Q gi|254781043|r  551 AREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARV  610 (611)
Q Consensus       551 ~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~  610 (611)
                      ||.||||     |||+||+||++.+ ++++|+|.+.++||.|+++..+ .++.++|..|.
T Consensus       524 ~R~DyPe-----RDD~nW~kH~~l~-k~~~g~m~~~~~~v~py~~p~~-~~~~~~~~~~~  576 (894)
T PRK13800        524 DRADLPA-----RDDDQWGYHLNLR-KGDDGRMEFLKRPVAPYFVPVP-GLDDLPPVDRT  576 (894)
T ss_pred             CCCCCCC-----CCCHHHHHHHHCC-CCCCCCEEEECCCCCCEEECCC-CCCCCCCCCCC
T ss_conf             2366887-----6626666654312-1788754650367776362253-46789998887


No 33 
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00  E-value=0  Score=801.74  Aligned_cols=425  Identities=30%  Similarity=0.491  Sum_probs=370.9

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |+-+|||||||||+|||+||++|+ +|++|+||+|.++.+|+|.+|||||+++.+   .|+++.|++||+++|++++|++
T Consensus         1 ~~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~~~~nS~~A~GGi~aa~~---~dd~~~~~~DtlkaG~~~~d~~   76 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKLNECNTYLAQGGISVARN---KEDIPTFVEDTLKAGQYKNNLE   76 (433)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHCCCCEEECC---CCCHHHHHHHHHHHCCCCCCHH
T ss_conf             986487899995699999999617-899889997889999766876027247328---9987999999998657878899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf             9999999889999999986998132799855100146411456787656407986665426678999999873-123031
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFF  172 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~  172 (611)
                      +|+.+|++++++|+||++|||+|+|+++|.. +..+|||+        .+|++|+.|.||..|++.|.+++.+ .+|+++
T Consensus        77 lv~~l~~~s~~ai~~L~~~Gv~f~r~~~g~~-~~r~GgHs--------~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~i~  147 (433)
T PRK06175         77 AVKILANESIENINKLIDMGLNFDKDEKELN-YTKEGAHS--------VNRIVHFKDYTGKKVEKILLKKVKKRKNITII  147 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE-EECCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9999999889999999975986211688724-54146566--------78523358862999999999999717996799


Q ss_pred             CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r  173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF  252 (611)
Q Consensus       173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf  252 (611)
                      +++.+++||++ +++|+|++++  ++|+++.|+||+|||||||++++|..+||++.+||||++||+++||.|.|||||||
T Consensus       148 ~~~~~~~Li~~-~~~v~G~v~~--~~g~~~~i~AkaVILATGG~g~l~~~tTN~~~~tGdG~a~A~raGA~l~dme~iQ~  224 (433)
T PRK06175        148 ENCELVDIIEN-DNTCIGGILL--KDNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRHNIKIKDLDYIQI  224 (433)
T ss_pred             EEEEEEEEEEE-CCEEEEEEEE--ECCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEE
T ss_conf             73887887873-8989999999--57978999836699867986543247799988677899999981887379760678


Q ss_pred             CCCCCCCC-----EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf             88844220-----1430456655780898326861255407651004752011156889988178888888746886111
Q gi|254781043|r  253 HPTGIYGA-----GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNH  327 (611)
Q Consensus       253 hPt~~~~~-----~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~  327 (611)
                      |||+++.+     .+|++|++||+|++|+|++|+|||+       ||+|||++|++|+.|++++++     ..||||++|
T Consensus       225 hPt~~~~~~~~~~~~Lise~~RG~Ga~L~n~~GeRF~~-------El~pRDvvs~ai~~e~~~~~~-----~~v~ld~~~  292 (433)
T PRK06175        225 HPTAFYKKTIEGKKFLISESVRGEGGKLLNIKGERFVD-------ELLPRDVVTKAIYEEMKKTNS-----NYVYLDITF  292 (433)
T ss_pred             EEEEECCCCCCCCCEEECHHHCCCCCEEECCCCCCHHC-------CCCCHHHHHHHHHHHHHHCCC-----CEEEEECCC
T ss_conf             86377378887743353233227863797799888110-------457535899999999972699-----758831123


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             79899999853799999764367865440675203310012342157715853778885332276034021220335664
Q gi|254781043|r  328 LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGA  407 (611)
Q Consensus       328 ~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGa  407 (611)
                      ++.+.++++||.+++.+.. .|+||.++||||.|++||+||||+||.+++          |+|||||||||+||+|+|||
T Consensus       293 ~~~~~~~~~~p~i~~~~~~-~giD~~k~~i~v~P~~Hy~mGGi~id~~~~----------t~i~GLyAaGEva~~GvHGa  361 (433)
T PRK06175        293 KDKDFLKNRFPTIYNNCLK-RGIDITKDKIPVSPAQHYFMGGIKVDLNSK----------TSMKNLYAFGEVSCTGVHGA  361 (433)
T ss_pred             CCHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCCCCCCCCEEECCCCC----------CCCCCEEEEECCCCCCCCCC
T ss_conf             7879999875899999998-299985886589745131066967999985----------34899788277656787740


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             30476432222223215677556654202656676400235788863101037887136899987887665
Q gi|254781043|r  408 NRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQ  478 (611)
Q Consensus       408 nrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~  478 (611)
                      ||||||||++|+||||+||+++++++..... ...+....+...+.+..+.+........+++.+||.-|.
T Consensus       362 NRLggnSLle~~VfGr~Ag~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
T PRK06175        362 NRLASNSLLEGLVFSKRGAEKINSEIDNIKL-NITKIYTLKHDVEYYSLLNKKIIIKELEKLRGDLKDELV  431 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1058889999999999999999999851667-742110147779999875376899999999999876641


No 34 
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803    During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=100.00  E-value=0  Score=613.46  Aligned_cols=524  Identities=26%  Similarity=0.333  Sum_probs=420.0

Q ss_pred             CEEEECCCHHHHHHHHHHH----HCCCCEEEEECCCCCCCCCHHCCC--CEEEECCC-------CCCCCHHHHH-HHHHH
Q ss_conf             5889899689999999999----889829999868988521041165--34251378-------9999999999-98998
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMA----EKGFKTACITKVFPTRSHTVAAQG--GIAASLAN-------MTPDSWQWHL-YDTIK   84 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~----e~G~~V~lieK~~~~~g~s~~A~G--Gi~a~~~~-------~~~Ds~~~~~-~Dt~~   84 (611)
                      ||||||+|++||-||.+|.    +.|+||+|+||+.+.||+++ |||  .||+.++.       .+.|+..+++ -|+| 
T Consensus         1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~eRSGAV-AQGLsAINtY~g~~Grs~~eN~~eDyVRyvr~DlM-   78 (651)
T TIGR02061         1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAVERSGAV-AQGLSAINTYLGLRGRSERENDAEDYVRYVRLDLM-   78 (651)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHCCHH-
T ss_conf             9478717855202789999874068837999611465422156-76678988651677665668882110321100012-


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEE---CCC-------------CCCCCCCCCCCCCEEEE
Q ss_conf             458877999999999988999999998699813279-9855100---146-------------41145678765640798
Q gi|254781043|r   85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE-AGKIYQR---PFG-------------GHMQNYGEGPPVQRTCA  147 (611)
Q Consensus        85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~-~G~~~~~---~~g-------------g~~~~~~~g~~~~R~~~  147 (611)
                         ||+++||+-.++.|.-++|+..|+||+|.-+++ +|.+.-.   ...             |+|+-..+|.+++    
T Consensus        79 ---GlvREDL~fD~aRHVD~~VHlFE~WGLP~w~~p~dG~y~eGaaakvaGkslrkGdaPvReGrWQIMIhGESYK----  151 (651)
T TIGR02061        79 ---GLVREDLVFDVARHVDDAVHLFEEWGLPLWKKPKDGKYLEGAAAKVAGKSLRKGDAPVREGRWQIMIHGESYK----  151 (651)
T ss_pred             ---HHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC----
T ss_conf             ---3467888741201417510012216896331868887423114444201210378872377415875476660----


Q ss_pred             ECCCCCHHHHHHHHHHHHHC-C-CE-EECCCEEEEEEECCC--CCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCC
Q ss_conf             66654266789999998731-2-30-311315652000134--4301246898058708995067247415765654334
Q gi|254781043|r  148 AADRTGHAILHTLYGQALKN-N-AE-FFIEYFALDLIINSE--GCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFS  222 (611)
Q Consensus       148 ~~d~tG~~i~~~L~~~~~~~-g-v~-i~~~~~~~~Li~d~d--G~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~  222 (611)
                                ....+.+++. | =+ |+++.++++||+|++  ++|.|||+||++++++++|+||+||+||||+.++|++
T Consensus       152 ----------pIvAEAAK~a~g~~~ni~eRifi~~LL~Dkn~PNriAGAVGFnvR~~~~hvFKaktvivAaGGA~n~yrP  221 (651)
T TIGR02061       152 ----------PIVAEAAKKAVGKDRNIFERIFIVKLLLDKNKPNRIAGAVGFNVREGEYHVFKAKTVIVAAGGASNVYRP  221 (651)
T ss_pred             ----------HHHHHHHHHHCCCCCCCEEHEEEEEEECCCCCCCCEECCCEEEECCCCEEEEECCEEEEECCCCCCCCCC
T ss_conf             ----------4899998752275444110102110002688887122011001017865698712456630661001357


Q ss_pred             C---------CCCCEECCHHHHHHHHHCCCCCCCC--CCCCCCCCC---CCCEEECCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             2---------1064014448878875136533332--223288844---2201430456655780898326861255407
Q gi|254781043|r  223 A---------TSAHTCTGDGAGMVARAGLPLQDME--FVQFHPTGI---YGAGCLITEGARGEGGYLVNSKGERFMERYA  288 (611)
Q Consensus       223 ~---------t~~~~~tGdG~~mA~~aGa~l~~mE--f~qfhPt~~---~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~  288 (611)
                      +         +||..+||++|.|.++|||.|+.||  ||-|.=++=   ++..||+..      .+--|+.||.|..+..
T Consensus       222 RStGEgaGR~WYa~w~~GS~Y~m~~~aGA~mT~mEnRfvpaRFKDGYGPVGAwFL~fK------~ka~N~~GEeY~~~~~  295 (651)
T TIGR02061       222 RSTGEGAGRVWYAVWDAGSAYTMLLKAGAKMTQMENRFVPARFKDGYGPVGAWFLFFK------AKAKNALGEEYIKTRR  295 (651)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH------HHCCCCCCCCHHHHCH
T ss_conf             6244367750036456635789999863324322034022033178887689998888------6305788612355130


Q ss_pred             CCCCCCCCC-----------------CEEHHHHHHHHHHCCCCCCCCCEEEEEE----------------CCCCHHHHHH
Q ss_conf             651004752-----------------0111568899881788888887468861----------------1179899999
Q gi|254781043|r  289 PSAKDLASR-----------------DVVSRCMMMEIREGRGVGKSKDHIHLYL----------------NHLDPAVLQE  335 (611)
Q Consensus       289 ~~~~el~~r-----------------d~~s~ai~~ei~~g~g~~~~~~~v~ld~----------------~~~~~~~l~~  335 (611)
                      +...+..++                 -...-+++.||.+|||      |+|++.                .||.++.++.
T Consensus       296 a~L~~y~~~gya~p~~shrthrPIPTcLRNH~~~~E~~~Grg------PIyM~T~eAlq~~~~~l~~~~~Khlee~awed  369 (651)
T TIGR02061       296 AELKEYKDKGYAKPELSHRTHRPIPTCLRNHALLREVREGRG------PIYMDTKEALQDLAATLDKKKLKHLEEEAWED  369 (651)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC------CCEECHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             220355775345862024557888784144699999960879------81105388875253010335543367654454


Q ss_pred             HHHHHHHHH--HHHCCCCCCCCEEEEECCCCCCCC------CCCC----------CCCCEEECCCCCCCCCCCCCEEECC
Q ss_conf             853799999--764367865440675203310012------3421----------5771585377888533227603402
Q gi|254781043|r  336 RLPGISESA--RIFAGVDVTRDPIPVIPTVHYNMG------GIPT----------NYWGEVLDANSKNPERFAPGLMAIG  397 (611)
Q Consensus       336 ~~~~~~~~~--~~~~g~D~~~~~i~v~p~~hy~~G------Gi~v----------d~~g~v~~~~~~~~~t~i~GLyAaG  397 (611)
                      .|....-++  +.-.++||..++-|++|+.+|.||      |+||          |+.-+.-+..-.|+||||.|||+||
T Consensus       370 FLdMtVgQA~LWActn~dP~e~~sE~~p~EPY~mGSHsg~cG~WvsGPdEd~~PeeY~~~~~nG~~YNRMTTVeGLF~~g  449 (651)
T TIGR02061       370 FLDMTVGQAVLWACTNVDPKERNSELAPAEPYVMGSHSGECGIWVSGPDEDLVPEEYAVRAANGKKYNRMTTVEGLFAIG  449 (651)
T ss_pred             HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHCC
T ss_conf             51012888888875078877787876666771005222467623427756778705764156886125421201465301


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHCCCC---------CCCCCC--
Q ss_conf             12203356643047643222222321567755665420-265667640023578886310103---------788713--
Q gi|254781043|r  398 EAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK-SSPIPSLDISSCDRIMDRFDRLRH---------ADGHVP--  465 (611)
Q Consensus       398 e~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~--  465 (611)
                      +|+.+.-|   .++|.|.+|    ||+|++.|.+|+.. +.+.+..+.+.+++.+..+++|..         .++.+|  
T Consensus       450 D~vGa~pH---kFSSGSftE----GR~AaKaavr~ildG~k~~~~~~da~~Eelkk~~Y~Pme~f~~yk~~sTa~~VNPn  522 (651)
T TIGR02061       450 DAVGASPH---KFSSGSFTE----GRLAAKAAVRYILDGKKEGKEVSDAVVEELKKEVYKPMERFREYKDESTADSVNPN  522 (651)
T ss_pred             CCCCCCCC---CCCCCCCHH----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             34688886---677664157----88999999777533678888543889999999851226788887652278887877


Q ss_pred             ---HHHHHHHHHHHHHCCCEEEE-----CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---68999878876650972687-----5899999999999999998415157877545889999998888999999999
Q gi|254781043|r  466 ---TAALREKMQRAMQLDAGVFR-----TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATV  537 (611)
Q Consensus       466 ---~~~i~~~Lq~iM~~~~gi~R-----~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~  537 (611)
                         |.+...+|||+|++|||.+-     |+.-|+.+|++|.-|+|++..+.+.|-     |||++|||+.|++.++++++
T Consensus       523 YI~P~qgl~RL~K~~DEY~gGv~t~Y~Tne~lL~~gl~lla~leEDleKLAArdl-----HELlRaWEl~HR~wT~ea~~  597 (651)
T TIGR02061       523 YILPKQGLVRLQKLMDEYAGGVATIYKTNEKLLDIGLELLALLEEDLEKLAARDL-----HELLRAWELKHRLWTAEAHL  597 (651)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf             4475345567654432106850465430388999999998776411778878778-----89998888765898888786


Q ss_pred             HHHHCCCCCC--CCEECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECC
Q ss_conf             9996262550--4623533778876668803213569999846898059999447
Q gi|254781043|r  538 YSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV  590 (611)
Q Consensus       538 ~aal~R~ESR--G~H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv  590 (611)
                      +|.|+|+|||  |..||.|||+     -||++|.|++++.+++++|+.++.|.|-
T Consensus       598 ~H~lFRkEtRwPGyYYR~D~~~-----ldDe~Wkcfv~Skydp~~gE~~~eK~Py  647 (651)
T TIGR02061       598 RHILFRKETRWPGYYYRADYLE-----LDDEEWKCFVVSKYDPETGEYTIEKAPY  647 (651)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCC-----CCCCCCEEEEEECCCCCCCCEEEEECCE
T ss_conf             4421022367888400056666-----6755646888622157778567740660


No 35 
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00  E-value=0  Score=602.52  Aligned_cols=395  Identities=30%  Similarity=0.421  Sum_probs=315.6

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-----CCCCHHHHHHHHHHHCCCCC-C
Q ss_conf             05889899689999999999889829999868988521041165342513789-----99999999998998458877-9
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-----TPDSWQWHLYDTIKGSDWLG-D   91 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-----~~Ds~~~~~~Dt~~~g~~l~-d   91 (611)
                      --|||||||+|||+|||+|++.|++|+||||++..+|||..|++|||++....     ..||++.|++||+|+|.+.+ |
T Consensus       410 ~rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lGGNS~KASSGINgAgT~~Qk~~GI~DS~ElF~~DTlKSGkG~n~D  489 (1167)
T PTZ00306        410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGGHCD  489 (1167)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             86899897579999999999779957999578988874003315736689777897099888889999988733789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCC-------CCHHHHHHHHHHH
Q ss_conf             999999999889999999986998132799855100146411456787656407986665-------4266789999998
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADR-------TGHAILHTLYGQA  164 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~-------tG~~i~~~L~~~~  164 (611)
                      |+|++.|+++|.++|+||.++|++|+.       +..+|||+        ++|+|...++       .|..|+++|.+.+
T Consensus       490 PeLVr~La~~SadAIeWL~e~GVdLs~-------LsqLGGHS--------vkRTHR~~~~~~G~pvPiG~~Iv~~Le~~i  554 (1167)
T PTZ00306        490 PGLVKTLSVKSADAISWLSSLGVPLTV-------LSQLGGAS--------RKRCHRAPDKKDGTPVPIGFTIMRTLEDHI  554 (1167)
T ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCHHH-------HCCCCCCC--------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             799999997348899999984998477-------02456878--------676467988778864676599999999999


Q ss_pred             HH---CCCEEECCCEEEEEEECCCC--------CCEEEEEEE--ECCCEEEEECCCCEEEECCCCCCC---------C--
Q ss_conf             73---12303113156520001344--------301246898--058708995067247415765654---------3--
Q gi|254781043|r  165 LK---NNAEFFIEYFALDLIINSEG--------CCVGVVAWQ--LETGEIHRFSAKLVVLATGGYGRA---------Y--  220 (611)
Q Consensus       165 ~~---~gv~i~~~~~~~~Li~d~dG--------~V~Gav~~~--~~~G~~~~i~AkaVILATGG~~~l---------y--  220 (611)
                      ++   .+|+++.++.+++|+.|.++        +|+||...+  -.+|..+.|.|++||||||||+.-         |  
T Consensus       555 k~kl~~~V~I~~~tkVt~LL~d~~g~~DG~~~~kVtGVey~~~~d~eG~~~tI~AkaVVLATGGFgaDke~~sLLkkYrP  634 (1167)
T PTZ00306        555 RTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAP  634 (1167)
T ss_pred             HHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf             86355672788557899987415767567653158889984235678854998347799968887766206678876396


Q ss_pred             ----CCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------EEECCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             ----3421064014448878875136533332223288844220-------14304566557808983268612554076
Q gi|254781043|r  221 ----FSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGA-------GCLITEGARGEGGYLVNSKGERFMERYAP  289 (611)
Q Consensus       221 ----~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~-------~~l~~~~~rg~G~~l~n~~Gerf~~~y~~  289 (611)
                          .+|||.+++||||+.||.++||.+.||++||.|||++..|       .+|..|++||+||+|+|++|+||++    
T Consensus       635 dL~~fpTTNgpgATGDGIkMA~~IGA~LVDMd~IQVHPTGfVDPkdp~~~tkfLaaEALRG~GGILVNk~GkRFVN----  710 (1167)
T PTZ00306        635 QLSGFPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVN----  710 (1167)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCEEEEEHHHCCEEEEECCCCCCCCC----
T ss_conf             4368888899997626899999859817367625534751357878665541342014316504998689981112----


Q ss_pred             CCCCCCCCCEEHHHHHHHHHH--CCCCCCCCCEEEEEEC-----------------------------------CCCHHH
Q ss_conf             510047520111568899881--7888888874688611-----------------------------------179899
Q gi|254781043|r  290 SAKDLASRDVVSRCMMMEIRE--GRGVGKSKDHIHLYLN-----------------------------------HLDPAV  332 (611)
Q Consensus       290 ~~~el~~rd~~s~ai~~ei~~--g~g~~~~~~~v~ld~~-----------------------------------~~~~~~  332 (611)
                         ||.+||+||.+|..+-.+  +.+-   ....|+-+.                                   .++++.
T Consensus       711 ---EL~TRDvVS~AIlaQ~~~yp~~gg---~k~AylVlne~~ak~~~~~~~~fY~kk~GLmkk~dTiEELAk~igv~~e~  784 (1167)
T PTZ00306        711 ---ELDLRSVVSQAIIAQGNEYPGSGG---SKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVEN  784 (1167)
T ss_pred             ---CCCCHHHHHHHHHHCCCCCCCCCC---CEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCHHH
T ss_conf             ---344178999999845455777777---60389996768887642100334410245389828899999886969999


Q ss_pred             HHHHHHHHHHHHHHHCCCCC-----------CCCE---EEEECCCCCCCCCCCCCCCCEEECCCCCC----CCCCCCCEE
Q ss_conf             99985379999976436786-----------5440---67520331001234215771585377888----533227603
Q gi|254781043|r  333 LQERLPGISESARIFAGVDV-----------TRDP---IPVIPTVHYNMGGIPTNYWGEVLDANSKN----PERFAPGLM  394 (611)
Q Consensus       333 l~~~~~~~~~~~~~~~g~D~-----------~~~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~----~~t~i~GLy  394 (611)
                      |++.+..+.+........+.           .+.|   ++|.|.+|||||||.||.++||++.++..    ...+|+|||
T Consensus       785 L~~Tle~YN~~v~~kkDdpF~gK~~fp~~l~~kgPfYai~VTPvVHhTMGGlkINtkAqVL~~dg~vnV~~~gKPI~GLY  864 (1167)
T PTZ00306        785 LHRTLETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLF  864 (1167)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEECCCCEEEECCCCCCCCCCCCCCCCEE
T ss_conf             99999999999862898732475457875678898799998235612689836888854884478512356687427657


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             40212203356643047643222222321567755665420265
Q gi|254781043|r  395 AIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP  438 (611)
Q Consensus       395 AaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~  438 (611)
                      ||||+ ++|+||+||||||||+||+|||||||++||...++...
T Consensus       865 AAGEV-TGGVHG~NRLGGNSLlECVVFGRIAGd~AA~i~~~~~~  907 (1167)
T PTZ00306        865 GAGEV-TGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKKY  907 (1167)
T ss_pred             ECCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             86421-47656676660577878886148776989998752535


No 36 
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960   This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=100.00  E-value=0  Score=609.61  Aligned_cols=383  Identities=36%  Similarity=0.530  Sum_probs=317.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCHHCCCCEEEECCCCC-----CC-CHHHHHHHHHHHCCCCCC
Q ss_conf             5889899689999999999889-8299998689885210411653425137899-----99-999999989984588779
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTRSHTVAAQGGIAASLANMT-----PD-SWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-----~D-s~~~~~~Dt~~~g~~l~d   91 (611)
                      ||||||||.|||+||++|.++| .+|+||||+++.+|||..+.|+||++....+     +| |+|++++||||+|.+.+|
T Consensus         1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~   80 (487)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND   80 (487)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             96898427688999999986468763787057523226899772102356848885488899677889988863278887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECC--CCCHHHHHHHHHHHHHCC-
Q ss_conf             99999999988999999998699813279985510014641145678765640798666--542667899999987312-
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAAD--RTGHAILHTLYGQALKNN-  168 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d--~tG~~i~~~L~~~~~~~g-  168 (611)
                      |+|++.|+++|.+.++||++.++.|.-+.     +..+|||+        .+|+|-..+  .+|.+|+..|.+.+++.| 
T Consensus        81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~-----~~~~GGhs--------~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gs  147 (487)
T TIGR01813        81 PELVRTLAEESADAVDWLQDCGVGFRLDD-----LIQLGGHS--------VKRAHRPTGGAASGAEIVQKLSKKAKKEGS  147 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEECCH-----HHHCCCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             89999999878899887764221000111-----44327876--------464303478876784011777887743377


Q ss_pred             -----CEEECCCEEEEEEECCCCCCEEEEEEE-------ECCCEEEEECCCCEEEECCCCC-CC------C-------CC
Q ss_conf             -----303113156520001344301246898-------0587089950672474157656-54------3-------34
Q gi|254781043|r  169 -----AEFFIEYFALDLIINSEGCCVGVVAWQ-------LETGEIHRFSAKLVVLATGGYG-RA------Y-------FS  222 (611)
Q Consensus       169 -----v~i~~~~~~~~Li~d~dG~V~Gav~~~-------~~~G~~~~i~AkaVILATGG~~-~l------y-------~~  222 (611)
                           |++..++.+++||.|++|+|+|+++..       -..+.++.+.+|+||||||||+ .-      |       ..
T Consensus       148 kDsnlv~~~~n~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~~~~y~P~L~~~~~  227 (487)
T TIGR01813       148 KDSNLVETRLNSKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKELIKKYDPELKGKLD  227 (487)
T ss_pred             CCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHHHCHHHCCCCC
T ss_conf             43211221006727999986971189999621225887777873267550606897576133338999861801167023


Q ss_pred             CCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------EEECCCCCCCCC---EEEEE-CCCCCCCCCCCCCC
Q ss_conf             21064014448878875136533332223288844220-------143045665578---08983-26861255407651
Q gi|254781043|r  223 ATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGA-------GCLITEGARGEG---GYLVN-SKGERFMERYAPSA  291 (611)
Q Consensus       223 ~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~-------~~l~~~~~rg~G---~~l~n-~~Gerf~~~y~~~~  291 (611)
                      |||.++.||||+.||..+||.++||.|||.|||+.+.+       ++++++++|+.|   |+++| .+|+|||+      
T Consensus       228 sTN~~GaTGDg~~~a~~~GA~~vdm~~iQ~~Pt~~~d~gDrennW~~~~~~~~r~~GF~~aI~~n~~~G~RF~n------  301 (487)
T TIGR01813       228 STNQPGATGDGIKMAEKIGAALVDMDFIQAHPTASPDEGDRENNWGFLISEAVRGYGFAKAILINPKTGERFVN------  301 (487)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCEEECCEEECCCEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC------
T ss_conf             46899635799999998088745040474261442698751024465665667522552217732678850003------


Q ss_pred             CCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEC---------CCC-----------------HHHHHHH--H------
Q ss_conf             00475201115688998817888888874688611---------179-----------------8999998--5------
Q gi|254781043|r  292 KDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN---------HLD-----------------PAVLQER--L------  337 (611)
Q Consensus       292 ~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~---------~~~-----------------~~~l~~~--~------  337 (611)
                       ||++||.+|.+|........|.|.....+.+|-.         ...                 -|.|.+.  +      
T Consensus       302 -El~~Rd~~s~aI~a~~~k~~gkPDn~A~l~~~~~~~~~a~~~~~~~Gelkeft~~g~~~K~ds~e~LAK~yD~~~~~~~  380 (487)
T TIGR01813       302 -ELATRDTVSDAILAQPGKSEGKPDNRAYLVFDEDVAKKAEEVENYLGELKEFTKDGVAYKGDSLEELAKQYDFNIPAAA  380 (487)
T ss_pred             -CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCHHH
T ss_conf             -4672568999998388878878885506880857876667777765467666314855430248999986167989899


Q ss_pred             -----HHHHHHHHHHC-CCCC------------C-CCE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CEE
Q ss_conf             -----37999997643-6786------------5-440---67520331001234215771585377888533227-603
Q gi|254781043|r  338 -----PGISESARIFA-GVDV------------T-RDP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAP-GLM  394 (611)
Q Consensus       338 -----~~~~~~~~~~~-g~D~------------~-~~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~-GLy  394 (611)
                           ..+++...  . |.|+            . +-|   ++|.|.+|||||||.||+.+||++.+..   ++|| |||
T Consensus       381 L~~~v~~yN~~v~--~Dg~D~~F~r~~d~~~d~~l~~PyY~~~~~P~vHhTMGGv~IntkaeVl~~~~~---~pI~nGLf  455 (487)
T TIGR01813       381 LKKTVKDYNEYVA--KDGKDTAFGRRNDMKDDLSLKAPYYAIKVTPKVHHTMGGVKINTKAEVLDENGE---KPIKNGLF  455 (487)
T ss_pred             HHHHHHHHHHHHH--CCCCCHHHCCCCCCHHHCEECCCEEEEEEECCEEEECCCEEECCCCHHHHHCCC---CCCCCCCE
T ss_conf             9999988731320--478871234678873220205888999963771575486367874055353589---66877646


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             402122033566430476432222223215677
Q gi|254781043|r  395 AIGEAGCASVHGANRLGSNSLIDLVVFGRAAVI  427 (611)
Q Consensus       395 AaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~  427 (611)
                      ||||+ ++|+||+|||||||++||+||||+||+
T Consensus       456 AAGEV-TGGvHG~nRLGGna~~d~~vFGr~Ag~  487 (487)
T TIGR01813       456 AAGEV-TGGVHGANRLGGNAIADCIVFGRIAGE  487 (487)
T ss_pred             EEEEE-ECCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             76773-067136621223467668761400269


No 37 
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00  E-value=0  Score=539.41  Aligned_cols=399  Identities=28%  Similarity=0.433  Sum_probs=314.6

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHCCC
Q ss_conf             3231058898996899999999998898299998689885210411653425137-----89999999999989984588
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIKGSDW   88 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~~g~~   88 (611)
                      ++.+|||||||+|.|||+||++|+|+|++|+||||.+..+|+|.+++|++++...     ....|+++.+++|+++.+.+
T Consensus        57 ~~~~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~~s~g~~~~~~t~~q~~~G~~ds~~~~~~d~~~~~~~  136 (506)
T PRK06481         57 LKDKYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG  136 (506)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             26984679989889999999999988997899968999995188855884526999999738999999999999973488


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCC--CCHHHHHHHHHHHHH
Q ss_conf             779999999999889999999986998132799855100146411456787656407986665--426678999999873
Q gi|254781043|r   89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADR--TGHAILHTLYGQALK  166 (611)
Q Consensus        89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~--tG~~i~~~L~~~~~~  166 (611)
                      .+|+++++.|+++++++|+||+++|++|.+..       ..+        +.+.+|.+...+.  .|..++..|.+.+.+
T Consensus       137 ~~d~~l~~~~~~~s~~~idWl~~~G~~~~~~~-------~~g--------~~~~~~~~~~~~g~~~g~~lv~~l~~~~~~  201 (506)
T PRK06481        137 TNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-------ITG--------GMSEKRTHRPHDGSAVGGYLVDGLLKNVQE  201 (506)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCC--------CCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             88899999999838999999997598466676-------678--------877670343488764799999999999987


Q ss_pred             CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC------CCC------CCCCCCEECCHHH
Q ss_conf             1230311315652000134430124689805870899506724741576565------433------4210640144488
Q gi|254781043|r  167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR------AYF------SATSAHTCTGDGA  234 (611)
Q Consensus       167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~------ly~------~~t~~~~~tGdG~  234 (611)
                      .||+++.++.+++|+ ++||+|+||++. ..+++.+.|.||+||||||||+.      -|.      .++++.++||||+
T Consensus       202 ~gv~i~~~t~~~~L~-~~dG~V~GV~~~-~~~g~~~~i~akaVILATGGf~~N~em~~~~~p~~~~~~~~~~~g~tGDGi  279 (506)
T PRK06481        202 RKIPLFVNADVTKIT-EKDGKVTGVKVK-INGKETKTISSKAVVVTTGGFGANKKMIAKYRPDLKGYVTTNQEGSTGDGI  279 (506)
T ss_pred             CCCEEEECCEEEEEE-ECCCCEEEEEEE-ECCCEEEEEECCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf             798799877832323-058937899999-689849999735699977887767999997395434763069998753899


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC-----CCCCC---CEE------
Q ss_conf             7887513653333222328884422014304566557808983268612554076510-----04752---011------
Q gi|254781043|r  235 GMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAK-----DLASR---DVV------  300 (611)
Q Consensus       235 ~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~-----el~~r---d~~------  300 (611)
                      .||+++||.+.||+++|+||+....+++++++.++++++++||.+|+||++++.+...     ..-|.   .++      
T Consensus       280 ~ma~~aGa~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~i~Vn~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~ifd~~~~  359 (506)
T PRK06481        280 KMIEKLGGTTVDMDQIQIHPTVQQSKSYLIGEAVRGEGAILVNQKGKRFGNELDTRDKVSAAINKLPEKSAYVIFDEGVK  359 (506)
T ss_pred             HHHHHCCCEEECCCCEEECCCCCCCCCCCCCHHHCCCCEEEECCCCCCCHHCCCCHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf             99998699484576404325544787530037554886068899988800000628689999985435661587062577


Q ss_pred             --HHHHHHHHHHCCCCCCCCCEE--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCC----------CCCE---EEEECCC
Q ss_conf             --156889988178888888746--8861117989999985379999976436786----------5440---6752033
Q gi|254781043|r  301 --SRCMMMEIREGRGVGKSKDHI--HLYLNHLDPAVLQERLPGISESARIFAGVDV----------TRDP---IPVIPTV  363 (611)
Q Consensus       301 --s~ai~~ei~~g~g~~~~~~~v--~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~----------~~~~---i~v~p~~  363 (611)
                        .+++..-+..|...  ..+.+  ..+.-.+|++.|++.+..+++.|....+.|+          .+.|   +++.|..
T Consensus       360 ~~~~~~~~~~~~g~~~--~adTleeLA~~~gi~~~~L~~tv~~yN~~~~~g~D~dfgr~~~~~~~i~~gPfYav~~~p~~  437 (506)
T PRK06481        360 DRVKAIAQYEEKGFVE--EGKTIDELAKKINVPAETLTKTIDTWNKAVKNKKDEAFGRTTGMDNDLSTGPYYAIKIAPGI  437 (506)
T ss_pred             HHHHHHHHHHHCCCCC--CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEEEEEEEHHH
T ss_conf             7778899998628754--47979999987198989999888888888740772543533246687767980789987344


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             1001234215771585377888533227603402122033566430476432222223215677556654202
Q gi|254781043|r  364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS  436 (611)
Q Consensus       364 hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~  436 (611)
                      |+||||++||.++||++.++    ++|||||||||++ +|+||.||+|||+++.|+||||+||++||+|++.+
T Consensus       438 ~~T~GGl~id~~~qVld~dg----~~IpGLYAaGe~a-gg~~g~~~~gG~~l~~a~vfGr~AG~~AA~~~k~~  505 (506)
T PRK06481        438 HYTMGGVKINTNTEVLKKDG----SPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFVKAQ  505 (506)
T ss_pred             CEECCCEEECCCCCEECCCC----CEECCEEECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             47876917993737668996----9939977754556-17877861589999999999999999999999734


No 38 
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=100.00  E-value=0  Score=513.77  Aligned_cols=381  Identities=44%  Similarity=0.612  Sum_probs=315.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC---CCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             588989968999999999988982999986898852104116534251378---99999999999899845887799999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN---MTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~---~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ||||||+|+|||+||++|+|+|++|+||||.+..+|+|.+++|+++.....   ...|+++.+++|+++.+.+.+|++++
T Consensus         1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~s~G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~   80 (401)
T pfam00890         1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGLDELADHPYV   80 (401)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             98999886999999999997899489997899999768884523100488435157999999999999965887889999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             9999988999999998699813279-985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNE-AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~-~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                      +.|+++++++++||++||++|.+.. ++.+...+++++...................+|..++..|.+++++.||+++.+
T Consensus        81 ~~~~~~s~~~~dwl~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~  160 (401)
T pfam00890        81 EAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSATWRTPHDVADRRRGTLGTGHALLARLLEGALKRGIDFQPR  160 (401)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             99998679999999983997775677871113356666665021035454455678889999999999999769989938


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCC-CEEEECCCCCCC---------CCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf             156520001344301246898058708995067-247415765654---------3342106401444887887513653
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAK-LVVLATGGYGRA---------YFSATSAHTCTGDGAGMVARAGLPL  244 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~Ak-aVILATGG~~~l---------y~~~t~~~~~tGdG~~mA~~aGa~l  244 (611)
                      +++++||+| +|+|+||++.+..+|+.+.|+|+ +||||||||++.         +..+++++.+||||+.||+++||.+
T Consensus       161 t~~~~Li~d-~g~V~Gv~~~~~~~g~~~~i~A~kaVIlAtGGf~~n~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGa~l  239 (401)
T pfam00890       161 HPADDLIVE-DGRVTGVVVENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALRAGAAL  239 (401)
T ss_pred             CEEEEEEEE-CCEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             696156982-8858999999678980999995106799668813448876410667653378984866999999839074


Q ss_pred             CC--CCCCCCCCCCCCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf             33--32223288844220---14304566557808983268612554076510047520111568899881788888887
Q gi|254781043|r  245 QD--MEFVQFHPTGIYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKD  319 (611)
Q Consensus       245 ~~--mEf~qfhPt~~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~  319 (611)
                      .+  |+++|+||..+.+.   ..++...+.+.|++++|.+|+||+++.       .+++++++++.....+..    ...
T Consensus       240 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~i~vn~~G~Rf~~e~-------~~~~~~~~~~~~~~~~~~----~~~  308 (401)
T pfam00890       240 TDDLMEFVQFHPTSLPGIRLGSGLLIEALRGEGGILVNDDGRRFMNEL-------ASRDVVSRAITRNEIDEG----RGA  308 (401)
T ss_pred             CCCCCHHEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEHHCC-------CCHHHHHHHHHHHHHHCC----CCC
T ss_conf             588722216646313687887630344035797899889998702203-------527299999999998536----788


Q ss_pred             EEEEEECC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCC
Q ss_conf             46886111-79899999853799999764367865440675203310012342157715853778885332276034021
Q gi|254781043|r  320 HIHLYLNH-LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGE  398 (611)
Q Consensus       320 ~v~ld~~~-~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe  398 (611)
                      ..|++.++ ++++.|++.+..+++.|....+.||.++|+++.|..|||+|||+||.++||++.++    ++|||||||||
T Consensus       309 ~~~l~~~~~~~~~~l~~tv~~yn~~~~~g~d~d~~~~~~~~~~~~~~T~GGl~id~~~qVld~~g----~~IpGLYAaGe  384 (401)
T pfam00890       309 HVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDPYDRPIPVFPAQHYTMGGVRTDENGRVLDADG----QPIPGLYAAGE  384 (401)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCEECCCEEECCCCEEECCCC----CEECCEEEECC
T ss_conf             68999489999899999999999999966898856670367654182045817981763878999----89189887116


Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             22033566430476432
Q gi|254781043|r  399 AGCASVHGANRLGSNSL  415 (611)
Q Consensus       399 ~a~~g~hGanrlggnsl  415 (611)
                      |+|+|+||+||||||+|
T Consensus       385 ~a~gg~hG~~rl~g~~l  401 (401)
T pfam00890       385 VACGGVHGANRLGGNSL  401 (401)
T ss_pred             CCCCCCCCCCCCHHHCC
T ss_conf             76568887675631089


No 39 
>PRK07121 hypothetical protein; Validated
Probab=100.00  E-value=0  Score=506.76  Aligned_cols=404  Identities=25%  Similarity=0.259  Sum_probs=286.3

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEEC------CCCCCCCHHHHHHHHHHHC
Q ss_conf             3323105889899689999999999889829999868988521041165342513------7899999999999899845
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL------ANMTPDSWQWHLYDTIKGS   86 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~------~~~~~Ds~~~~~~Dt~~~g   86 (611)
                      --|+||||||||+|+|||+||++|+++|++|+||||.+..+|+|.+++|++++..      ....+||++.+++|+++.+
T Consensus        16 ~wd~e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~sgG~~~~~~~t~~q~~~g~~Ds~e~~~~~~~~~~   95 (491)
T PRK07121         16 SWDDEADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAV   95 (491)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             66687698998967999999999998899289995489999508883777260799999997389999999999999970


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC-------CCCCCCC---CCCCCCCCEEE---EECCC-C
Q ss_conf             887799999999998899999999869981327998551001-------4641145---67876564079---86665-4
Q gi|254781043|r   87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRP-------FGGHMQN---YGEGPPVQRTC---AAADR-T  152 (611)
Q Consensus        87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~-------~gg~~~~---~~~g~~~~R~~---~~~d~-t  152 (611)
                      .+.+|+++++.|+++++++++||+++|++|++...+.....+       |.|....   .....+.+|.+   +.++. .
T Consensus        96 ~~~~d~~l~~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~pr~h~~~~~g~~~~  175 (491)
T PRK07121         96 GDGVDEEKIRRYCEGSVEHFDWLEGLGVPFERSYFPEKTSYPPNDEGLYYSGNEKVWPFAEHAKPAPRGHRVQGPGDTGG  175 (491)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf             89999999999997229999999974997455657765535677754202585223321013576676653214787764


Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------C-----
Q ss_conf             266789999998731230311315652000134430124689805870899506-7247415765654------3-----
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------Y-----  220 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y-----  220 (611)
                      |..++..|.+.+++.||+++.++.+++||+|++|+|+||++.  .+++...|+| |+||||||||+.-      |     
T Consensus       176 g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~d~~G~V~Gv~~~--~~~~~~~i~A~k~VILAtGGf~~n~~m~~~~~p~~~  253 (491)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYETRATRLIVDGDGRVVGVRAR--RFGETGAIRARKGVVLAAGGFAMNRDMVARYAPRYA  253 (491)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEE--ECCCEEEEEECCCEEECCCCCCCCHHHHHHHCCCCC
T ss_conf             999999999999857987996779999999799988999999--789169998147279846996876999997582334


Q ss_pred             -CCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCC--
Q ss_conf             -3421064014448878875136533332223288844220143045665578089832686125540765--10047--
Q gi|254781043|r  221 -FSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPS--AKDLA--  295 (611)
Q Consensus       221 -~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~--~~el~--  295 (611)
                       ..+++++++||||+.||+++||.|.+|+++|.++. +.++..+       .++++||.+|+||++|....  .....  
T Consensus       254 ~~~~~~~~~~tGdGi~ma~~aGA~l~~m~~~~~~~~-~~~~~~~-------~~gi~Vn~~G~RF~nE~~~~~~~~~~~~~  325 (491)
T PRK07121        254 GGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRF-IYPPSAL-------LRGILVNKRGQRFVAEDSYGARIGHFILE  325 (491)
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCC-------CCCEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             786678999973799999982997027866000256-5783003-------66269999998667676626789999984


Q ss_pred             CCCEEH-----HHHHHHHHHCCCCC---CCCCEEEEE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCC--CCC---
Q ss_conf             520111-----56889988178888---888746886-1------117989999985379999976436786--544---
Q gi|254781043|r  296 SRDVVS-----RCMMMEIREGRGVG---KSKDHIHLY-L------NHLDPAVLQERLPGISESARIFAGVDV--TRD---  355 (611)
Q Consensus       296 ~rd~~s-----~ai~~ei~~g~g~~---~~~~~v~ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~--~~~---  355 (611)
                      ..+..+     .....+........   .....+.-| +      -.++++.|++.+..+++.+..  |.|+  .|.   
T Consensus       326 ~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~--G~D~~fgk~~~~  403 (491)
T PRK07121        326 QPGGTAYLIVDAALFREARAQLRPQIDGFTPGARKAETIEELARELGIPPGALAATVDAYNRAAAR--GEDPLFHKQPEW  403 (491)
T ss_pred             CCCCEEEEEECHHHHHHHHHHCCHHHHHHCCCCEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC
T ss_conf             889739999778998532431221455413562214889999988497979999999999999862--999755788532


Q ss_pred             --E--------EEEEC----CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             --0--------67520----331001234215771585377888533227603402122033566430476432222223
Q gi|254781043|r  356 --P--------IPVIP----TVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVF  421 (611)
Q Consensus       356 --~--------i~v~p----~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vf  421 (611)
                        |        +++.|    .+|||||||+||.++||++.+++    +||||||||||+ +|+||+||++||||++|+||
T Consensus       404 l~pi~~~Pfyav~~~~~~~~~~~~T~GGl~id~~~qVld~~g~----~IpGLYAaGe~a-gg~~g~~yl~G~sl~~~~vf  478 (491)
T PRK07121        404 LAPLDTGPFYALDLSVGTSMFPGFTLGGLRVDEDGEVLRADGA----PIPGLYAAGRCA-VGIASNGYVSGLSLADCSFS  478 (491)
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCEECCCCEECCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf             2515679847999624754654461568009978857889989----809976675265-68887876468889999999


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             215677556654
Q gi|254781043|r  422 GRAAVIRASEMI  433 (611)
Q Consensus       422 G~~Ag~~aa~~~  433 (611)
                      ||+||++||+++
T Consensus       479 GriAG~~AA~~a  490 (491)
T PRK07121        479 GRRAGRHAAARA  490 (491)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999734


No 40 
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00  E-value=0  Score=488.36  Aligned_cols=389  Identities=22%  Similarity=0.217  Sum_probs=273.7

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHCCC
Q ss_conf             3105889899689999999999889829999868988--52104116534251378-----9999999999989984588
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT--RSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIKGSDW   88 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~--~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~~g~~   88 (611)
                      .++||||||+|+|||+||++|+|+|++|+||||++..  +|+|.++ +|+.++.+.     ...++.+.|++|+++.+.+
T Consensus         3 ~~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~~s-~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   81 (456)
T PRK08274          3 AMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHT-RNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG   81 (456)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHH-CCCHHHCCCHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             7388899998899999999999879909999832777888030553-864455368665426889999999999987289


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             77999999999988999999998699813279985510014641145678765640798666542667899999987312
Q gi|254781043|r   89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN  168 (611)
Q Consensus        89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g  168 (611)
                      ++|+++++.++++++++++||+++|++|.....+....                .|........|..++..|.+++++.|
T Consensus        82 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~----------------~~~~~~~~g~G~~~~~~l~~~~~~~g  145 (456)
T PRK08274         82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHV----------------ARTNAFFMGGGKALVNALYRSAERLG  145 (456)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----------------CCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             87699999999723999999997196135668886444----------------79834147987999999999999739


Q ss_pred             CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC-------CCCC------CCCCCEECCHHHH
Q ss_conf             30311315652000134430124689805870899506724741576565-------4334------2106401444887
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR-------AYFS------ATSAHTCTGDGAG  235 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~-------ly~~------~t~~~~~tGdG~~  235 (611)
                      |++++++.+++||+| +|+|+||++.+      ..|+||+||||||||++       .|..      .++++.+||||+.
T Consensus       146 v~i~~~t~~~~Li~d-~g~V~Gv~~~~------~~i~AkaVVLAtGGf~~N~em~~~~~~~~~~~~~~~g~~~~tGdGi~  218 (456)
T PRK08274        146 VEIRYDAPVTALELD-DGRFVAARAGA------ERIRARAVVLAAGGFEANREWLREAWGQPADNFLIRGTPYNQGVLLK  218 (456)
T ss_pred             CEEEECCEEEEEEEE-CCEEEEEEECE------EEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             979938888999990-99999999253------89716869995789888999998644863224410589877669999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCC--C---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC--------C-CCCCEEH
Q ss_conf             887513653333222328884422--0---143045665578089832686125540765100--------4-7520111
Q gi|254781043|r  236 MVARAGLPLQDMEFVQFHPTGIYG--A---GCLITEGARGEGGYLVNSKGERFMERYAPSAKD--------L-ASRDVVS  301 (611)
Q Consensus       236 mA~~aGa~l~~mEf~qfhPt~~~~--~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~e--------l-~~rd~~s  301 (611)
                      ||+++||.+.+ ++.|+|++.+..  |   +.+.+.......+++||.+|+||++|..+....        . ...+.++
T Consensus       219 ma~~aGA~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~Vn~~G~RF~nE~~~~~~~~~a~~~~~~~~~~~~~~  297 (456)
T PRK08274        219 MLLDAGADAIG-DPSQCHAVAIDARAPLYDGGICTRIDCVPLGIVVNRDGERFYDEGEDFWPKRYAIWGRLVAQQPGQIA  297 (456)
T ss_pred             HHHHCCCCCCC-CCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf             99983987347-86513457741688877775012101344048999999861568877552069887799983999717


Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEE-EC------CCCHHHHHHHHHHHHHHHHHH------------CCCCCCCC----E--
Q ss_conf             56889988178888888746886-11------179899999853799999764------------36786544----0--
Q gi|254781043|r  302 RCMMMEIREGRGVGKSKDHIHLY-LN------HLDPAVLQERLPGISESARIF------------AGVDVTRD----P--  356 (611)
Q Consensus       302 ~ai~~ei~~g~g~~~~~~~v~ld-~~------~~~~~~l~~~~~~~~~~~~~~------------~g~D~~~~----~--  356 (611)
                      +.|+.+-...+........+--| +.      .+|++.|.+.+..+++.+...            .+++|.+.    |  
T Consensus       298 ~~i~D~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~pi~  377 (456)
T PRK08274        298 YQIFDAKAIGRFMPPVFPPIQADSLEELAEKLGLDAEAFVRTVRAYNAACRPGTFDPTVLDDCRTEGLTPPKSHWARPLD  377 (456)
T ss_pred             EEEECHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99977688755120247831147799999881999999999999999887518878633323222467777656567477


Q ss_pred             ------EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             ------67520331001234215771585377888533227603402122033566430476432222223215677556
Q gi|254781043|r  357 ------IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS  430 (611)
Q Consensus       357 ------i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa  430 (611)
                            +++.|..|||||||+||.++||++.++    ++|||||||||++++++||+|||+||||++|+||||+||++||
T Consensus       378 ~~Pfya~~~~p~~~~T~GGl~id~~~qVl~~~g----~pI~GLYAaGe~~~G~~~G~~y~~G~sl~~~~vfGriAG~~AA  453 (456)
T PRK08274        378 TPPFYAYPVRPGITFTYLGLKVDETARVRFADG----RPSPNLFAAGEMMAGNVLGKGYTAGVGMTIGTVFGRIAGEEAA  453 (456)
T ss_pred             CCCEEEEEEEHHHCEECCCCEECCCCCEECCCC----CEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             798799998731026367825998886578999----8839988781346466576875247789999999999999998


Q ss_pred             HHH
Q ss_conf             654
Q gi|254781043|r  431 EMI  433 (611)
Q Consensus       431 ~~~  433 (611)
                      +++
T Consensus       454 ~~A  456 (456)
T PRK08274        454 RAA  456 (456)
T ss_pred             HCC
T ss_conf             439


No 41 
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=464.68  Aligned_cols=411  Identities=25%  Similarity=0.330  Sum_probs=286.3

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHH---HHHHHHHHC
Q ss_conf             231058898996899999999998898299998689885210411653425137-----899999999---999899845
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQW---HLYDTIKGS   86 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~---~~~Dt~~~g   86 (611)
                      |+||||||||+|+|||+||++|+|+|++|+||||.+..+|+|.++.|+|.+...     ...+||++.   ++.+++...
T Consensus         4 D~e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~GG~s~~sgG~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~~~   83 (552)
T PRK12844          4 DVTVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKVGGSTAMSGGVLWLPNNPLMLADGVPDSHEDALAYLDAVVGDQ   83 (552)
T ss_pred             CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf             77209799896789999999999889968999889996664798565854089999997189989999999999984555


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEECCCCCCCC------------------C-----CCCC--
Q ss_conf             887799999999998899999999869981327998-5510014641145------------------6-----7876--
Q gi|254781043|r   87 DWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAG-KIYQRPFGGHMQN------------------Y-----GEGP--  140 (611)
Q Consensus        87 ~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G-~~~~~~~gg~~~~------------------~-----~~g~--  140 (611)
                      ....++++.+.+++++++.++||++.|++|...+.- .++....+|+...                  .     ..+.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~wl~~~g~~f~~~~~~~d~~~~~~gg~~~gr~~~~~~~d~~~~g~~~~~~~~~~~~~~~~  163 (552)
T PRK12844         84 GPASSPERREAYLTAGPAMISFLEHQGMRFARCEGWSDYYPELPGGLARGRSVEAQPLDARKLGPWFAKLNPPMATPPGT  163 (552)
T ss_pred             CCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHCCHHHHCCCCCCCCCCE
T ss_conf             65888999999996089999999965983564267752245667776688420255677565041144306652347740


Q ss_pred             --------------CCCEEEE--------------E---CCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCE
Q ss_conf             --------------5640798--------------6---66542667899999987312303113156520001344301
Q gi|254781043|r  141 --------------PVQRTCA--------------A---ADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCV  189 (611)
Q Consensus       141 --------------~~~R~~~--------------~---~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~  189 (611)
                                    ..++...              .   --..|..++..|.+.+.+.||+++.++.+++||+| +|+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~d-~G~V~  242 (552)
T PRK12844        164 VVMTDEYKWLQLIKRTPRGMRTAARVGARTAAARIRGQKLLTNGAALIGRMLAAALAAGVPVWTNTPLTELVVE-DGRVT  242 (552)
T ss_pred             EECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEC-CCEEE
T ss_conf             10112455444321043221234344345454421255334574899999999998769938935721367622-98599


Q ss_pred             EEEEEEECCCEEEEECC-CCEEEECCCCCC------CCC-------CCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             24689805870899506-724741576565------433-------4210640144488788751365333322232888
Q gi|254781043|r  190 GVVAWQLETGEIHRFSA-KLVVLATGGYGR------AYF-------SATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT  255 (611)
Q Consensus       190 Gav~~~~~~G~~~~i~A-kaVILATGG~~~------ly~-------~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt  255 (611)
                      ||++.  .+|+.+.|+| |+||||||||+.      -|.       .+++.+.+||||+.||+++||.+.+|+..|++|.
T Consensus       243 Gv~a~--~~g~~~~i~A~kgVILATGGf~~N~em~~~~~p~~~~~~~~~~~~~~tGdGi~ma~~~GA~~~~m~~~~~~~~  320 (552)
T PRK12844        243 GVVVV--RDGREVLITARRGVLLNSGGFGHNAEMRKRYQPQPNEGDWTIANPGDTGEGIEAAMRLGAALDLMDEAWWVPG  320 (552)
T ss_pred             EEEEE--ECCEEEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEECCE
T ss_conf             99999--8994899984225799258720099999970887556764468988785799999985984025653314140


Q ss_pred             CCCCCE---EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-----CCEEHHHHHHHHHHCC---C-CCCC------
Q ss_conf             442201---43045665578089832686125540765100475-----2011156889988178---8-8888------
Q gi|254781043|r  256 GIYGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDLAS-----RDVVSRCMMMEIREGR---G-VGKS------  317 (611)
Q Consensus       256 ~~~~~~---~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~-----rd~~s~ai~~ei~~g~---g-~~~~------  317 (611)
                      ...+.+   .+........++++||.+|+||++|..+.. ++..     .+..++.|+.+-...+   + ....      
T Consensus       321 ~~~~~~~~~~~~~~~~~~p~~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~  399 (552)
T PRK12844        321 IPLPTGGPPYMHNSERSLPGSIIVDRAGRRFCNEAGSYM-EVGRRMYANDAVPAWMIMDSRYRKRYLFGDIPPGPTPQEW  399 (552)
T ss_pred             EECCCCCCCCCCCCHHCCCCEEEECCCCCCCCCCCCCHH-HHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCCCCCHHHH
T ss_conf             467899754213312218845998999984756777589-9999998288975799988799965233547875257999


Q ss_pred             --CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------------------CE---EEE
Q ss_conf             --87468-86-1------11798999998537999997643678654-------------------------40---675
Q gi|254781043|r  318 --KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR-------------------------DP---IPV  359 (611)
Q Consensus       318 --~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~-------------------------~~---i~v  359 (611)
                        ...++ -| +      -.+|++.|++.+..+++.|....+.|+.|                         -|   +++
T Consensus       400 ~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dfgr~~~~~~~~~~d~~~~p~~~l~pi~~~PfYA~~~  479 (552)
T PRK12844        400 LDSGYMKRADTIEELAGKCGIDPAGLAATVERFNRFAATGTDPDFHRGESAYDRYYGDPTNKPNPNLGPLDKAPFYAVRM  479 (552)
T ss_pred             HHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             86697687599999998859699999999999999986499834476620222025676668872226356799899998


Q ss_pred             ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             2033100123421577158537788853322760340212203356643047-64322222232156775566542
Q gi|254781043|r  360 IPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRAAVIRASEMID  434 (611)
Q Consensus       360 ~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~Ag~~aa~~~~  434 (611)
                      .|..|+|||||+||.++||++.+++    +|||||||||++ +|+||.||+| |+||.+|+|||||||++||..+.
T Consensus       480 ~p~~~~T~GGl~in~~~qVL~~~g~----pIpGLYAaGe~~-gg~~g~~y~g~G~sl~~~~~fGriAg~~AA~~~~  550 (552)
T PRK12844        480 VPGDVGTSGGLLTDEYARVLDTDGS----VIPGLYATGNCT-ASVMGRTYPGAGASIGNSMVFGYIAALHAAGASS  550 (552)
T ss_pred             EHHHCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8634635878129999716899989----849976666465-4778898665056288899999999999872200


No 42 
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=453.25  Aligned_cols=423  Identities=22%  Similarity=0.270  Sum_probs=292.9

Q ss_pred             CCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC-----CCCCCHHHHHHH
Q ss_conf             053441332310588989968999999999988982999986898852104116534251378-----999999999998
Q gi|254781043|r    7 LKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN-----MTPDSWQWHLYD   81 (611)
Q Consensus         7 ~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~D   81 (611)
                      |..+.+.-|+||||||||+|.|||+||++|+|+|++|+||||.+..+|+|.++.|+|.+....     ...|+++.++.+
T Consensus         1 ~~~~e~~wD~e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~sgG~i~~~gt~~q~~~G~~d~~e~~~~~   80 (584)
T PRK12835          1 MSGTEQNFDRTVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYSPDPDDVFGY   80 (584)
T ss_pred             CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEECCCCHHHHHHCCCCCHHHHHHH
T ss_conf             99877785775387998967899999999998899589996999987177873868352899999983898999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCC-CCEEEE--------------CC-----C---------
Q ss_conf             9984588779999999999889999999986998132--799-855100--------------14-----6---------
Q gi|254781043|r   82 TIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSR--NEA-GKIYQR--------------PF-----G---------  130 (611)
Q Consensus        82 t~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r--~~~-G~~~~~--------------~~-----g---------  130 (611)
                      +.....+..++++++.+++++++.++||++.+..|..  .++ ..++..              ++     +         
T Consensus        81 l~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~gg~~~g~~~~~~~~d~~~lg~~~~~~~~~  160 (584)
T PRK12835         81 LKQITGGLVSDARLRQYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGDDEQHLLPP  160 (584)
T ss_pred             HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf             99973888899999999970399999999629635675127865324345687556753245665343315432223674


Q ss_pred             ------CCCCCC------------CCCCC-----CCEEE----E--ECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf             ------411456------------78765-----64079----8--6665426678999999873123031131565200
Q gi|254781043|r  131 ------GHMQNY------------GEGPP-----VQRTC----A--AADRTGHAILHTLYGQALKNNAEFFIEYFALDLI  181 (611)
Q Consensus       131 ------g~~~~~------------~~g~~-----~~R~~----~--~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li  181 (611)
                            |++...            ..+..     ..|..    +  .....|+.+...|...+.+.||+++.++++++||
T Consensus       161 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li  240 (584)
T PRK12835        161 LALAPKGIWFAPKDLRLFYQVRQSWAGKAVLLKLIWRMVRARVFGDRMAAIGQSLAARLRLALKEAGVPLWLDSPMTELI  240 (584)
T ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCEEEECCCHHEEE
T ss_conf             10045651014321112232022446520122344545454430431100248899999999996498489557001447


Q ss_pred             ECCCCCCEEEEEEEECCCEEEEECCC-CEEEECCCCCCC------CC------CCCCCCEECCHHHHHHHHHCCCCCCCC
Q ss_conf             01344301246898058708995067-247415765654------33------421064014448878875136533332
Q gi|254781043|r  182 INSEGCCVGVVAWQLETGEIHRFSAK-LVVLATGGYGRA------YF------SATSAHTCTGDGAGMVARAGLPLQDME  248 (611)
Q Consensus       182 ~d~dG~V~Gav~~~~~~G~~~~i~Ak-aVILATGG~~~l------y~------~~t~~~~~tGdG~~mA~~aGa~l~~mE  248 (611)
                      +|++|+|+||++.  .+|+.+.|+|+ +||||||||+.-      |.      .+++.+.+||||+.||.++||.+.+|+
T Consensus       241 ~d~~G~V~Gv~a~--~~g~~~~i~A~kgVVLATGGf~~N~em~~~~~p~~~~~~~~g~p~~tGDGi~ma~~~GA~~~~~~  318 (584)
T PRK12835        241 TDPDGAVVGAVVE--RDGRPVRIGARRGVILASGGFDHDMDWRKEHLPELEKDWSFGNPANTGDGIRAGEKVGAATDLLD  318 (584)
T ss_pred             ECCCCCEEEEEEE--ECCEEEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             7699988999999--79907999703248991488666999999857112477445898877789999998599701443


Q ss_pred             CCCCCCCCCCCCE---EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-----------CCC---CEE--HHHHHHHHH
Q ss_conf             2232888442201---430456655780898326861255407651004-----------752---011--156889988
Q gi|254781043|r  249 FVQFHPTGIYGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDL-----------ASR---DVV--SRCMMMEIR  309 (611)
Q Consensus       249 f~qfhPt~~~~~~---~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el-----------~~r---d~~--s~ai~~ei~  309 (611)
                      ..+.+|+...+.+   +++.+... .++++||.+|+||++|..+.. ++           .+.   ..+  +++...-+.
T Consensus       319 ~~~~~p~~~~p~g~~~~~~~~~~~-~~~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~  396 (584)
T PRK12835        319 EAWWFPAICWPDGRMQFMLNERMM-PAQFIVNGAGKRFINEAAPYM-DFAHAMIDGQRSGVTHIPCWLITDIRSFSRYVV  396 (584)
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCC-CCEEEECCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCCEEEEEECHHHHHHHCC
T ss_conf             000068641799842440044567-755798999866887775265-699999962223888750899976899865311


Q ss_pred             HCCCCCC--------CCC---------EEEEEE---------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC---------
Q ss_conf             1788888--------887---------468861---------11798999998537999997643678654---------
Q gi|254781043|r  310 EGRGVGK--------SKD---------HIHLYL---------NHLDPAVLQERLPGISESARIFAGVDVTR---------  354 (611)
Q Consensus       310 ~g~g~~~--------~~~---------~v~ld~---------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~---------  354 (611)
                      .+.-...        .+.         .+....         -.+|++.|++....+++.|..-...|+.|         
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gvd~~~L~~TV~rYN~~~~~G~D~dFgr~~~~~~~~~  476 (584)
T PRK12835        397 GGHLPIPKIPFAPVPTGRKVPQAWLESGVVKAAHTWDELAAKIGVPAENLRATAERFNELARKGHDDDFNRGDSAYDNYY  476 (584)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
T ss_conf             55556765555545545311599975695676399999998829898999999999998875299845675521344025


Q ss_pred             ----------CE--------EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCC
Q ss_conf             ----------40--------6752033100123421577158537788853322760340212203356643047-6432
Q gi|254781043|r  355 ----------DP--------IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSL  415 (611)
Q Consensus       355 ----------~~--------i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl  415 (611)
                                .|        +++.|..++|+|||+||.++||++.+++    +||||||||||+ +|+||-||+| |++|
T Consensus       477 gdp~~p~~~l~pi~~~PfYA~~~~~~~~~T~GGl~in~~~qVLd~dg~----pIpGLYAaGe~~-gg~~g~~Y~g~G~~l  551 (584)
T PRK12835        477 GDPTLPNPNLYPLGKPPYYAFRIILGDLGTSGGLRTDEHARVLRSDDS----VVPGLYAVGNTS-AAVMGRSYAGAGATI  551 (584)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHH
T ss_conf             776788876575567997999986230546868329998861899979----869835685155-577878856404518


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             22222321567755665420265
Q gi|254781043|r  416 IDLVVFGRAAVIRASEMIDKSSP  438 (611)
Q Consensus       416 ~~~~vfG~~Ag~~aa~~~~~~~~  438 (611)
                      ..|+||||+||++||.+++....
T Consensus       552 g~a~tfGriAG~~aA~~~~~~~~  574 (584)
T PRK12835        552 GPAMTFGYVAARHIAAVVAAAAA  574 (584)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             88999999999999970154556


No 43 
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=456.56  Aligned_cols=404  Identities=23%  Similarity=0.272  Sum_probs=268.7

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHCCC
Q ss_conf             310588989968999999999988982999986898--852104116534251378-----9999999999989984588
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP--TRSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIKGSDW   88 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~--~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~~g~~   88 (611)
                      +||||||||+|+|||+||++|+++|++|+||||.+.  .+|+|.++.|+|.++...     ..+||++.+++|++....+
T Consensus         1 ~e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s~G~~~~~~t~~Qk~~Gi~DS~e~~~~d~~~~a~~   80 (549)
T PRK12834          1 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSFGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF   80 (549)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             99998998967899999999998799279996688889884677617787668999999848999999999999975278


Q ss_pred             CCCHHH-----HHHHHHH-HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             779999-----9999998-8999999998699813279985510014641145678765640798666542667899999
Q gi|254781043|r   89 LGDVDA-----IQYLAME-APQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYG  162 (611)
Q Consensus        89 l~d~~l-----v~~~~~~-a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~  162 (611)
                      -.+++.     ++.+++. +.+.++||+++||.|....+  ..   ..++......+.++||.+ ....+|..++..|.+
T Consensus        81 ~~~~d~~~~~~~~~~~~~~~~e~~~wL~~~Gv~f~~~~~--~~---~~~~~~~~g~g~s~pr~h-~~~~~G~~~~~~~~~  154 (549)
T PRK12834         81 DRPEDHWPRQWAEAYVEFAAGEKRSWLHSLGLRFFPVVG--WA---ERGGGDAGGHGNSVPRFH-ITWGTGPGVVEPFVR  154 (549)
T ss_pred             CCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCC--CC---CCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHH
T ss_conf             985136789999999875111178999966986210344--11---247755678888777735-567877169999999


Q ss_pred             HHH----HCCCEEECCCEEEEEEECCCCCCEEEEEEEE--------------CCCEEEEECCCCEEEECCCCCCC-----
Q ss_conf             987----3123031131565200013443012468980--------------58708995067247415765654-----
Q gi|254781043|r  163 QAL----KNNAEFFIEYFALDLIINSEGCCVGVVAWQL--------------ETGEIHRFSAKLVVLATGGYGRA-----  219 (611)
Q Consensus       163 ~~~----~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~--------------~~G~~~~i~AkaVILATGG~~~l-----  219 (611)
                      .+.    +.+|+++.++++++||++ +|+|+||.+..+              ..|+ +.|+||+||||||||+.-     
T Consensus       155 ~~~~~~~~~~v~~~~~t~a~~Li~~-~g~V~GV~~~~~~~~~~~~g~~~~~~~~g~-~~i~AkaVILATGGf~~N~em~~  232 (549)
T PRK12834        155 RVREAAARGLVTFRFRHRVDELIVT-NGAVTGVRGTVLEPSDAPRGAASSRTVVGE-FEFRAQAVIVTSGGIGGNHELVR  232 (549)
T ss_pred             HHHHHHHCCCEEEEECCEEEEEEEE-CCEEEEEEEEECCCCCHHCCCCCCCCCCCE-EEEECCEEEECCCCCCCCHHHHH
T ss_conf             9998741697089956885799975-998998886652566211044333334440-79978969990898764999998


Q ss_pred             -CCC-----------CCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE-CC---CCCCCCCEEEEECCCCCC
Q ss_conf             -334-----------21064014448878875136533332223288844220143-04---566557808983268612
Q gi|254781043|r  220 -YFS-----------ATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCL-IT---EGARGEGGYLVNSKGERF  283 (611)
Q Consensus       220 -y~~-----------~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l-~~---~~~rg~G~~l~n~~Gerf  283 (611)
                       |.+           +..|..++|||+.||.++||.+.+|+.+|.||+++.....+ ..   ..+.+.++++||.+|+||
T Consensus       233 ~~~P~~~~~~~~~~~~g~~~~~~Gdgi~ma~~aGA~l~~~d~~~~~~~g~~~~~p~~~~~g~~~~~g~~~i~Vn~~G~Rf  312 (549)
T PRK12834        233 RNWPERLGRPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWDPIWPNHGIRILPGPSSLWFDATGNRL  312 (549)
T ss_pred             HHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCC
T ss_conf             74923117875332138998888679999998199464552000145655678876765411432687405688889846


Q ss_pred             CCCCCCCCCCCCCCC------------EEHHHHH-HHHH-HC---------------------CCCC--------CCCCE
Q ss_conf             554076510047520------------1115688-9988-17---------------------8888--------88874
Q gi|254781043|r  284 MERYAPSAKDLASRD------------VVSRCMM-MEIR-EG---------------------RGVG--------KSKDH  320 (611)
Q Consensus       284 ~~~y~~~~~el~~rd------------~~s~ai~-~ei~-~g---------------------~g~~--------~~~~~  320 (611)
                      +++..|...++..++            +...++. ++.. .+                     .+.+        .+.. 
T Consensus       313 ~~e~~~~~d~~~~~~~~~~~~~~~~~~i~d~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-  391 (549)
T PRK12834        313 PAPLFPGFDTLGTLEHILKTGYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWRLLLRSRLGKGAPGPVEAFKDHGED-  391 (549)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC-
T ss_conf             8753345126889999874478606897036888887643121017431110199999876642153478999863767-


Q ss_pred             EEEEEC----------------CCCHHHHHHHHHHHHHHHHHHCCCCC----------------------------CCCE
Q ss_conf             688611----------------17989999985379999976436786----------------------------5440
Q gi|254781043|r  321 IHLYLN----------------HLDPAVLQERLPGISESARIFAGVDV----------------------------TRDP  356 (611)
Q Consensus       321 v~ld~~----------------~~~~~~l~~~~~~~~~~~~~~~g~D~----------------------------~~~~  356 (611)
                       |+...                .++.+.+++........+....+.|+                            .+-|
T Consensus       392 -~~~adtl~elA~~~~~l~~~~~id~~~l~~tv~~~~~~~~~~~~kd~~~~~~~~~~~~~~d~~~~~~~p~~~l~p~~gP  470 (549)
T PRK12834        392 -FVVADDLEELVAGMNALTGEPLLDAAHIRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVAKPHRLLDPAAGP  470 (549)
T ss_pred             -EEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -5863889999998513033448899999999999986430554545001012121000354101356864245777688


Q ss_pred             ---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             ---67520331001234215771585377888533227603402122---033566430476432222223215677556
Q gi|254781043|r  357 ---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG---CASVHGANRLGSNSLIDLVVFGRAAVIRAS  430 (611)
Q Consensus       357 ---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a---~~g~hGanrlggnsl~~~~vfG~~Ag~~aa  430 (611)
                         +++.|..|+|||||+||.++|||+.+++    +|||||||||++   .+|+||.|||+||||.+|+||||+||++||
T Consensus       471 fyA~~~~~~~~~T~GGl~in~~~qVL~~~G~----pI~GLYAAGE~ag~~~gg~hG~n~l~G~sl~~~~~fGRiAg~~Aa  546 (549)
T PRK12834        471 LIAVRLHILTRKTLGGLETDLDSRVLGADGT----PLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAA  546 (549)
T ss_pred             EEEEEEECCCCCCCCCEEECCCCCEECCCCC----EECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             7999960367636768169999844899989----838807460225578896067786624438899999999999999


Q ss_pred             HHH
Q ss_conf             654
Q gi|254781043|r  431 EMI  433 (611)
Q Consensus       431 ~~~  433 (611)
                      +++
T Consensus       547 k~~  549 (549)
T PRK12834        547 RAI  549 (549)
T ss_pred             HHC
T ss_conf             629


No 44 
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=441.27  Aligned_cols=420  Identities=20%  Similarity=0.249  Sum_probs=286.6

Q ss_pred             CCCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHH
Q ss_conf             620005344133231058898996899999999998898299998689885210411653425137-----899999999
Q gi|254781043|r    3 NSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQW   77 (611)
Q Consensus         3 ~~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~   77 (611)
                      ||-.+.+..+.-|.||||||||+| |||+||++|+|+|++|+||||.+..+|+|.+++|+|.+...     ....||++.
T Consensus         2 ~~~~~~~~~~~~D~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~GG~s~~SgG~~~~~gt~~q~~~Gi~Ds~e~   80 (566)
T PRK12845          2 HSATIPAGLPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGALWLPASPVLDEAGAGDTLER   80 (566)
T ss_pred             CCCCCCCCCCCCCCEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHHCCCCCHHH
T ss_conf             766689999876555497998846-9999999999889938999689999857787277556588999997489999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCC--CCCC--------CCC-----EEEECCC-----CCCCCC
Q ss_conf             99989984588779999999999889999999986-9981--3279--------985-----5100146-----411456
Q gi|254781043|r   78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHY-GVPF--SRNE--------AGK-----IYQRPFG-----GHMQNY  136 (611)
Q Consensus        78 ~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~-Gv~f--~r~~--------~G~-----~~~~~~g-----g~~~~~  136 (611)
                      .+.++.....+.+++++++.|++++++.++||++. ++.|  .+..        .|.     +..++|.     .+....
T Consensus        81 ~~~yl~~~~~~~~~~~~~~~~~d~~~~~~d~l~~~~~~~~~~~~~~~d~~~~~~gg~~~gr~~~~~p~d~~~~g~~~~~~  160 (566)
T PRK12845         81 ARTYLDAVVGGSAPAERSAAFLDHGSATVEMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRL  160 (566)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHC
T ss_conf             99999997388898999999996259999999854774265336787556456677457775565656333201102213


Q ss_pred             C------------CC--------------CCCCEEE-------------EECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf             7------------87--------------6564079-------------8666542667899999987312303113156
Q gi|254781043|r  137 G------------EG--------------PPVQRTC-------------AAADRTGHAILHTLYGQALKNNAEFFIEYFA  177 (611)
Q Consensus       137 ~------------~g--------------~~~~R~~-------------~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~  177 (611)
                      .            .+              ..+++..             ..-...|..++..|...+++.||+|++++.+
T Consensus       161 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~l~~~l~~~~~~~gV~i~~~t~~  240 (566)
T PRK12845        161 RPGVMEVSIPMPVTGADYRWLNLMARVPRKALPRIAKRLAQGIGGLALGRRYAAGGQALAAGLFAGVLRAGIPIWTETSL  240 (566)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCEE
T ss_conf             87620256554445056666555430532101466655311545313100103451789999999999759927824414


Q ss_pred             EEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------CC-------CCCCCCEECCHHHHHHHHHCCC
Q ss_conf             52000134430124689805870899506-7247415765654------33-------4210640144488788751365
Q gi|254781043|r  178 LDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------YF-------SATSAHTCTGDGAGMVARAGLP  243 (611)
Q Consensus       178 ~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y~-------~~t~~~~~tGdG~~mA~~aGa~  243 (611)
                      ++|+.| +|+|+||++.  .+|+.+.|+| |+||||||||+.-      |.       .+++++++||||+.||.++||.
T Consensus       241 ~~Li~d-~grV~Gv~~~--~~g~~~~i~A~k~VILAtGGF~~N~em~~~~~~~~~~~~~~~g~~~~tGdGi~ma~~~GA~  317 (566)
T PRK12845        241 VRLTDD-GGRVTGAVVD--HRGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAA  317 (566)
T ss_pred             EEEEEC-CCEEEEEEEE--ECCCEEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             888605-9858999999--8990799982435899058855699999974676445675468999884799999981867


Q ss_pred             CCCCCCCCCCCCCCCCCE----EECCCCCCCCCEEEEECCCCCCCCCCCCCC--C----C--C--CCCCEEHHHHHHHH-
Q ss_conf             333322232888442201----430456655780898326861255407651--0----0--4--75201115688998-
Q gi|254781043|r  244 LQDMEFVQFHPTGIYGAG----CLITEGARGEGGYLVNSKGERFMERYAPSA--K----D--L--ASRDVVSRCMMMEI-  308 (611)
Q Consensus       244 l~~mEf~qfhPt~~~~~~----~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~--~----e--l--~~rd~~s~ai~~ei-  308 (611)
                      +.+|+..+++|...+.++    .++.+ ....|+++||.+|+||++|..+..  .    +  .  .|.. .++.|+.+. 
T Consensus       318 ~~~m~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~i~Vn~~G~RF~nE~~~~~~~~~~~~~~~~~~~p~~-~~~~I~D~~~  395 (566)
T PRK12845        318 IDLMDQAWWFPAVAPLPGGAPAVMLAE-RSLPGSLIVDQTGRRFVNEATDYMSFGQRVLERERAGDPVE-SMWIVFDQQY  395 (566)
T ss_pred             CCCCCCCEECCCCCCCCCCCCCEEEEC-CCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC-CEEEEECHHH
T ss_conf             236660206760156799985045402-35673489889998514788767789999997775189876-3699986788


Q ss_pred             HH-----CCCCCCC--------CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------
Q ss_conf             81-----7888888--------87468-86-1------11798999998537999997643678654-------------
Q gi|254781043|r  309 RE-----GRGVGKS--------KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR-------------  354 (611)
Q Consensus       309 ~~-----g~g~~~~--------~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~-------------  354 (611)
                      ++     +...+..        ...++ .| +      -.+|++.|++.+..+++.+..-.+.|+.|             
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~g~~~kadtleELA~~~gi~~~~L~~Tv~~yN~~~~~G~D~dFgr~~~~~~~~~gdp~  475 (566)
T PRK12845        396 RNSYVFAAELFPRMPIPQAWYDAGIAHRADDLADLARAIGVPVDTFVATMRRFNEMAAAGVDSDFGRGRSAYDRYYGDPT  475 (566)
T ss_pred             HHHCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             74223221247776335888746744544879999999694999999999999999863998666877302320247755


Q ss_pred             -------CE--------EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             -------40--------6752033100123421577158537788853322760340212203356643047-6432222
Q gi|254781043|r  355 -------DP--------IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDL  418 (611)
Q Consensus       355 -------~~--------i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~  418 (611)
                             .|        +++.|..++|+||++||.++||++.+++    +|||||||||++ +|+||.||+| |++|.+|
T Consensus       476 ~~p~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~~VL~~dg~----pIpGLYAaGe~a-gg~~g~~y~G~G~~lg~~  550 (566)
T PRK12845        476 VTPNPNLRPLDRGPFYAVKMVLSDLGTCGGLRADERARVLREDGS----VIDGLYAIGNTA-ANAFGATYPGAGATIAQG  550 (566)
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----CCCCEEECCCCC-CCCCCCCCCCCHHHHHHH
T ss_conf             688856473677986999964232543768139999854899969----849834675355-477889857322508889


Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             223215677556654
Q gi|254781043|r  419 VVFGRAAVIRASEMI  433 (611)
Q Consensus       419 ~vfG~~Ag~~aa~~~  433 (611)
                      +|||||||++||...
T Consensus       551 ~~fGriAg~~aA~~~  565 (566)
T PRK12845        551 LVYGYIAAQDAAARL  565 (566)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999998655


No 45 
>PRK12839 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=439.23  Aligned_cols=416  Identities=22%  Similarity=0.243  Sum_probs=278.2

Q ss_pred             CCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHH
Q ss_conf             44133231058898996899999999998898299998689885210411653425137-----8999999999998998
Q gi|254781043|r   10 SYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIK   84 (611)
Q Consensus        10 ~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~   84 (611)
                      +.+-+|+||||||||+|.|||+||++|++.|++|+||||.+..+|+|.+++|++.+...     ...+||++.+..++..
T Consensus         2 ~p~~~~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~sgG~~~~~g~~~q~~~Gi~ds~e~~~~~l~~   81 (574)
T PRK12839          2 TPEHMKHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCGGATTWSGGWAWTPGNSLARADGVNEDKEEFRTYLQH   81 (574)
T ss_pred             CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEECCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf             81311771578998968999999999998899289996899998435562764322899999971999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC---C----------CCEEE--ECCCCCCCC------------C
Q ss_conf             4588779999999999889999999986-99813279---9----------85510--014641145------------6
Q gi|254781043|r   85 GSDWLGDVDAIQYLAMEAPQSVYELEHY-GVPFSRNE---A----------GKIYQ--RPFGGHMQN------------Y  136 (611)
Q Consensus        85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~-Gv~f~r~~---~----------G~~~~--~~~gg~~~~------------~  136 (611)
                      ......++++++.|++++++.++||++. ++.|....   +          |....  .+|.++...            .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~e~i~~l~~~~~~~~~~~~~~~d~~~~~~g~~~g~r~~~p~~~~~~~~~~~~~~~~~~~~~~  161 (574)
T PRK12839         82 VLGEYYQADKVDAFLDAAPEMVDFFEKKTDLQFVPGAKINDIYGNLPGAGTGHRSVGPKPFNGRRVPPSVLAKLRHQLYE  161 (574)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCC
T ss_conf             73644799999999970399999999668855623777641103576776587655776674301475665541233211


Q ss_pred             ----C----CCC----------CCCEE-EEE------------------CCCCCHHHHHHHHHHHHHCCCEEECCCEEEE
Q ss_conf             ----7----876----------56407-986------------------6654266789999998731230311315652
Q gi|254781043|r  137 ----G----EGP----------PVQRT-CAA------------------ADRTGHAILHTLYGQALKNNAEFFIEYFALD  179 (611)
Q Consensus       137 ----~----~g~----------~~~R~-~~~------------------~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~  179 (611)
                          .    .+.          ..++. .|+                  .-.+|..++..|.+.+.+.||+++.++.+++
T Consensus       162 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~al~~~l~~~~~~~Gv~i~~~t~~~~  241 (574)
T PRK12839        162 TSFLGMGIMAGPDLTKFLSASQFDPKGWVHAARRVIVHLLDLVVHRRNMQLVNGTALTGRLLTSADDLGVDLRVSTSAVS  241 (574)
T ss_pred             CCCCCCCEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf             23356520025368888753356862133444554312234330245554567299999999999982986996661479


Q ss_pred             EEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC------CC---------CCCCCCEECCHHHHHHHHHCCCC
Q ss_conf             0001344301246898058708995067247415765654------33---------42106401444887887513653
Q gi|254781043|r  180 LIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA------YF---------SATSAHTCTGDGAGMVARAGLPL  244 (611)
Q Consensus       180 Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l------y~---------~~t~~~~~tGdG~~mA~~aGa~l  244 (611)
                      ||+|++|+|+||++.+ .+|++....+|+||||||||+.-      |.         .++++..+||||+.||..+||.|
T Consensus       242 Li~d~~G~V~GV~~~~-~~g~~~i~a~kgVVLATGGF~~N~em~~~~~p~~p~~~~~~~~~~~~~tGDGi~ma~~~GA~l  320 (574)
T PRK12839        242 LNTDNAGRVTGVKVQT-PDGLVDFEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAREVGARF  320 (574)
T ss_pred             EEECCCCCEEEEEEEE-CCCEEEEEECCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             8761798488899981-795199983235899038843399999975745877555544478877648999999838871


Q ss_pred             CCC--CCCCCCCCCCCCC-----EE---ECCCCCCCCCEEEEECCCCCCCCCCCCCC------CCCCCC--CEEHHHHH-
Q ss_conf             333--2223288844220-----14---30456655780898326861255407651------004752--01115688-
Q gi|254781043|r  245 QDM--EFVQFHPTGIYGA-----GC---LITEGARGEGGYLVNSKGERFMERYAPSA------KDLASR--DVVSRCMM-  305 (611)
Q Consensus       245 ~~m--Ef~qfhPt~~~~~-----~~---l~~~~~rg~G~~l~n~~Gerf~~~y~~~~------~el~~r--d~~s~ai~-  305 (611)
                      .++  ...+++|..+.+.     +.   ++..  ...|+++||.+|+||++|..+..      ....+.  +..++.|+ 
T Consensus       321 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~--~~pg~i~Vn~~GkRF~nE~~~~~~~~~a~~~~~~~~~~~~~w~I~D  398 (574)
T PRK12839        321 VNDVKSPAAWCPVSLVPYRNGKVGTFPHIMDR--AKPGSIGVLATGKRFVNEANGYYDYVDAMLKAAPEGEPVASWQIAD  398 (574)
T ss_pred             CCCCCCCCEECCEECCCCCCCCCCCCHHHHHH--CCCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             33655654132233033568863311115551--4885278878998750477747469999997341479862499976


Q ss_pred             ----HHHHHCCCCCCCC-------CEEEEE---E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----------
Q ss_conf             ----9988178888888-------746886---1------11798999998537999997643678654-----------
Q gi|254781043|r  306 ----MEIREGRGVGKSK-------DHIHLY---L------NHLDPAVLQERLPGISESARIFAGVDVTR-----------  354 (611)
Q Consensus       306 ----~ei~~g~g~~~~~-------~~v~ld---~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~-----------  354 (611)
                          .....+...+...       ......   +      -.+|++.|++.+..+++.++.-.+.|+.|           
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~TV~~yN~~~~~G~D~dFgr~~~~~~~~~gd  478 (574)
T PRK12839        399 SRFVRKFPLGMAKPLPVPLTPYLRSGYLVKGRTIEELAQKCGIDPAGLRATVTEFNENARDGVDPEFGRGSTAFNKYGGD  478 (574)
T ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
T ss_conf             89997554333567775303464268067549999999886959899999999998887549884558776323213677


Q ss_pred             --------------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             --------------40---67520331001234215771585377888533227603402122033566430-4764322
Q gi|254781043|r  355 --------------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR-LGSNSLI  416 (611)
Q Consensus       355 --------------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanr-lggnsl~  416 (611)
                                    .|   +++.|..|+||||++||.++||++.+++    +|||||||||++ +|+||.|| +|||||.
T Consensus       479 ~~~~p~~~l~pI~~~PfYA~~~~p~~~~T~GGl~id~~~~VLd~~g~----pIpGLYAAG~~~-ggv~g~~y~~gG~slg  553 (574)
T PRK12839        479 PKNGPNPSLAPIEKGPFYAVKVVPGSFGTFAGLKADGKSRVLRDDDT----PIDGLYTAGNDQ-ASVMGGHYPAGGINLG  553 (574)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHHH
T ss_conf             56688744374667986999987031523888679988742899989----808865675355-5778888787377698


Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             22223215677556654
Q gi|254781043|r  417 DLVVFGRAAVIRASEMI  433 (611)
Q Consensus       417 ~~~vfG~~Ag~~aa~~~  433 (611)
                      +|+||||+||++||...
T Consensus       554 ~~~~fGriAG~~aA~~~  570 (574)
T PRK12839        554 PALTFGYIAGRELANST  570 (574)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999998620


No 46 
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=437.45  Aligned_cols=414  Identities=23%  Similarity=0.244  Sum_probs=277.5

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHCCCC
Q ss_conf             231058898996899999999998898299998689885210411653425137-----899999999999899845887
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIKGSDWL   89 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~~g~~l   89 (611)
                      +.+|||||||+|+|||+||++|+++|++|+||||....+|+|.++.|++.+...     ....||++.+..++.......
T Consensus        12 ~~d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~s~G~~~~~gt~~q~~~g~~Ds~e~~~~~~~~~~~~~   91 (576)
T PRK12843         12 RADTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGADDSLEAARTYLDALVGDF   91 (576)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf             78828699896889999999999889948999797999815666030012389999997589889999999999850887


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCC----------CCE-----EEECC----------------------CC
Q ss_conf             7999999999988999999998-6998132799----------855-----10014----------------------64
Q gi|254781043|r   90 GDVDAIQYLAMEAPQSVYELEH-YGVPFSRNEA----------GKI-----YQRPF----------------------GG  131 (611)
Q Consensus        90 ~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~----------G~~-----~~~~~----------------------gg  131 (611)
                      +++++++.++++++++++||++ .++.|.....          +..     ...+|                      +|
T Consensus        92 ~~~~l~~~~~~~s~~~i~~l~~~~~~~~~~~~~~~d~~~~~~g~~~~gr~~~p~~~~g~~~g~~~~~~~~~~~~~~~~gg  171 (576)
T PRK12843         92 SPEELRDAFLASGPKAIAFLEENSEVKFRPYASHPDYESDLPGATLRGRALEPQPFDGRKLGADFDLLRPPIPEFTVLGG  171 (576)
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHCCCCCCCCEECCC
T ss_conf             82999999996239999999965596455447787510367887546752456677544412036540677643211065


Q ss_pred             CCCCCCC-------CCCC---------------CEEEEECC---CCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCC
Q ss_conf             1145678-------7656---------------40798666---542667899999987312303113156520001344
Q gi|254781043|r  132 HMQNYGE-------GPPV---------------QRTCAAAD---RTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEG  186 (611)
Q Consensus       132 ~~~~~~~-------g~~~---------------~R~~~~~d---~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG  186 (611)
                      +......       ...+               .|..+...   ..|..++..|.+++.+.||+++.++.+++|++| +|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~L~~d-~g  250 (576)
T PRK12843        172 MMVDRTDVLHLLALFKSWRAFRHAARLLLRYARDRLRYARGTRLVMGNALVARLLYSLRKRGVRILTQTDVESLETD-HG  250 (576)
T ss_pred             CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEE-CC
T ss_conf             00144565554202334056777887764300111024677543440899999999999749879937851588841-99


Q ss_pred             CCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------C------CCCCCCCEECCHHHHHHHHHCCCCCCC--CCCC
Q ss_conf             30124689805870899506-7247415765654------3------342106401444887887513653333--2223
Q gi|254781043|r  187 CCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------Y------FSATSAHTCTGDGAGMVARAGLPLQDM--EFVQ  251 (611)
Q Consensus       187 ~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y------~~~t~~~~~tGdG~~mA~~aGa~l~~m--Ef~q  251 (611)
                      +|+||++.  ++|+.+.|+| |+||||||||+.-      |      ..+++.+++||||+.||.++||.+.++  .+..
T Consensus       251 ~V~Gv~~~--~~g~~~~i~A~k~VVLATGGf~~N~em~~~y~p~~~~~~~~~~~~~tGdGi~ma~~~GA~l~~~~~~~~~  328 (576)
T PRK12843        251 RVIGATVV--VGGVPRRIRARKGVVLATGGFNRHPELRRELLPATVARYSPCAPGHTGAAIDLALDLGASVGRGLLDVAF  328 (576)
T ss_pred             EEEEEEEE--ECCEEEEEEECCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCE
T ss_conf             79999999--8996799993470899169977699999973866434656688897858999999818774567756403


Q ss_pred             CCCCCCCCC----EEECCC--CCCC-CCEEEEECCCCCCCCCCCCCC---C---C---CCCCCEEHHHHHHH-HHH--CC
Q ss_conf             288844220----143045--6655-780898326861255407651---0---0---47520111568899-881--78
Q gi|254781043|r  252 FHPTGIYGA----GCLITE--GARG-EGGYLVNSKGERFMERYAPSA---K---D---LASRDVVSRCMMME-IRE--GR  312 (611)
Q Consensus       252 fhPt~~~~~----~~l~~~--~~rg-~G~~l~n~~Gerf~~~y~~~~---~---e---l~~rd~~s~ai~~e-i~~--g~  312 (611)
                      ++|+.....    ..++..  ..++ .|.++||.+|+||++|..+..   .   +   ..| ...++.|+.+ ..+  +.
T Consensus       329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~I~VN~~G~RF~nE~~~~~~~~~a~~~~~~~~~-~~~~~~I~D~~~~~~~~~  407 (576)
T PRK12843        329 WAPVSVRRRADGSTAVFPHFYLDRGKPGTIAVNQAGERFVNESTSYHDFGTAMFAAGKTAP-GIPAYLITDAEFLRRYGL  407 (576)
T ss_pred             ECCEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC-CCEEEEEECHHHHHHCCC
T ss_conf             4120046688886444633776505885699888888625677763189999998558799-931999989899975065


Q ss_pred             CCCCCC----------CEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC--------------------
Q ss_conf             888888----------7468-86-1------11798999998537999997643678654--------------------
Q gi|254781043|r  313 GVGKSK----------DHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR--------------------  354 (611)
Q Consensus       313 g~~~~~----------~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~--------------------  354 (611)
                      +.....          ..++ -| +      -.+|++.|++.+..+++.+....+.|+.|                    
T Consensus       408 ~~~~~~~~~~~~~~~~g~~~~adTleELA~~~gid~~~L~~TV~ryN~~~~~G~D~dFgk~~~~~~~~~g~~~~~~~p~L  487 (576)
T PRK12843        408 GMVRPGNRNLAPFLRDGYLTVASTLAELAPKIGIDPAALAATVQRHNQSARTGIDPDFGRGATAYSRMNGDAMIGPNPNL  487 (576)
T ss_pred             CCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
T ss_conf             65587641347786459579779999999884969999999999999887529996658774301023566445778564


Q ss_pred             ----C-E---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHH
Q ss_conf             ----4-0---6752033100123421577158537788853322760340212203356643047-64322222232156
Q gi|254781043|r  355 ----D-P---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRAA  425 (611)
Q Consensus       355 ----~-~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~A  425 (611)
                          + |   +++.|..|+|||||+||.++||++.+++    +|||||||||++ +|+||.||+| |++|.+|+||||+|
T Consensus       488 ~pI~~~PfYA~~~~p~~~~T~GGl~id~~~qVLd~dg~----pIpGLYAaG~~~-Gg~~g~~Y~g~G~slg~~~~fGriA  562 (576)
T PRK12843        488 GPIETAPFYAVRLYPGDIGAATGLVTDADARVLNADGQ----PISGLYACGNDM-ASIMGGTYPGPGITLGPAIVFAYLA  562 (576)
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCEEECCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             73667996999986120453778108998744899988----829975784344-5789898774056388899999999


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             775566542026
Q gi|254781043|r  426 VIRASEMIDKSS  437 (611)
Q Consensus       426 g~~aa~~~~~~~  437 (611)
                      |++||++++..+
T Consensus       563 g~~AA~~~~~~~  574 (576)
T PRK12843        563 ARHASKRTLARS  574 (576)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999998643022


No 47 
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=437.30  Aligned_cols=401  Identities=23%  Similarity=0.259  Sum_probs=275.7

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCC-EEEEC-----CCCCCCCHHHHHHHHHHHCC
Q ss_conf             3231058898996899999999998898299998689885210411653-42513-----78999999999998998458
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG-IAASL-----ANMTPDSWQWHLYDTIKGSD   87 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GG-i~a~~-----~~~~~Ds~~~~~~Dt~~~g~   87 (611)
                      -|+||||||||+| |||+||++|+++|++|+||||.+..+|+|.++.|| +-+..     ....+||++..+++......
T Consensus         6 WD~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~GG~sa~sgGg~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~   84 (515)
T PRK12837          6 FDEEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLQRAGTDDTIEDALTYYHAVVG   84 (515)
T ss_pred             CCCCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             5787397998906-999999999987998899978898881887458876650799999975887899999999998727


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC----C---------CC--EEEECCC----CCCCCCCCCC-CCCEEE
Q ss_conf             877999999999988999999998-699813279----9---------85--5100146----4114567876-564079
Q gi|254781043|r   88 WLGDVDAIQYLAMEAPQSVYELEH-YGVPFSRNE----A---------GK--IYQRPFG----GHMQNYGEGP-PVQRTC  146 (611)
Q Consensus        88 ~l~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~----~---------G~--~~~~~~g----g~~~~~~~g~-~~~R~~  146 (611)
                      +..++++++.+++++++.++||+. .|+.|.-.+    -         |.  +...+++    ++......+. ...|..
T Consensus        85 ~~~~~~l~~~~~~~~~~~i~wL~~~~~~~f~~~~~~dy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  164 (515)
T PRK12837         85 DRTPRELQETYVRGGAPLIEYLEQDEHFQFAELPWPDYFGKAPKARADGQRHIAPKPLPVAAAGELREQIRGPLDTDRLG  164 (515)
T ss_pred             CCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHCC
T ss_conf             86739999999972799999998575851455466543577877756785212565666011301454304765433306


Q ss_pred             EE---CCCCCHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCC---
Q ss_conf             86---665426678999999873-1230311315652000134430124689805870899506-724741576565---
Q gi|254781043|r  147 AA---ADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGR---  218 (611)
Q Consensus       147 ~~---~d~tG~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~---  218 (611)
                      +.   .-..|+.++..|.+.+.+ .+++++.++.+++||.| +|+|+||++.  .+|+.+.|+| |+||||||||+.   
T Consensus       165 ~~~~~~~~gG~~l~~~~l~~~~~~~gv~i~~~t~~~~Li~d-~g~V~Gv~a~--~~g~~~~i~A~kgVILAtGGf~~N~e  241 (515)
T PRK12837        165 APPPDYLTGGRALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVE--RDGERVRVRARRGVLLAAGGFEQNDD  241 (515)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEEC-CCEEEEEEEE--ECCCEEEEEECCEEEECCCCCCCCHH
T ss_conf             87632214669999999999876169669926733788842-9859999998--69917999724658990689654899


Q ss_pred             ---CC------CCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             ---43------342106401444887887513653333222328884422014304566557808983268612554076
Q gi|254781043|r  219 ---AY------FSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAP  289 (611)
Q Consensus       219 ---ly------~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~  289 (611)
                         -|      ..+++++++||||+.||+++||.+.+|...+++|.-..+.+. ........++++||++|+||++|.. 
T Consensus       242 m~~~~~~~~~~~~~~~~~~~tGdg~~ma~~~Ga~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~I~VN~~G~RF~nE~~-  319 (515)
T PRK12837        242 MRERYGVPGSARDTMGGPGNTGLAHRAGIAVGADTDLMDQAWWSPGLTHPDGR-SAFALWFTGGIFVDQHGERFVNESA-  319 (515)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCC-CCEEECCCCEEEECCCCCCCCCCCC-
T ss_conf             99970897555665589887649999999819971356612055762378986-4010002643898788883244878-


Q ss_pred             CCCCCCCCCEEHHHHHHHHHHCCCCC--------------C-CC-------------CEEEEE---EC------CCCHHH
Q ss_conf             51004752011156889988178888--------------8-88-------------746886---11------179899
Q gi|254781043|r  290 SAKDLASRDVVSRCMMMEIREGRGVG--------------K-SK-------------DHIHLY---LN------HLDPAV  332 (611)
Q Consensus       290 ~~~el~~rd~~s~ai~~ei~~g~g~~--------------~-~~-------------~~v~ld---~~------~~~~~~  332 (611)
                            ++|.+++++..+...+....              . ..             ...+..   +.      .+|++.
T Consensus       320 ------~~~~~~~a~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~adTleeLA~~~gi~~~~  393 (515)
T PRK12837        320 ------PYDRLGRAVIAEIDSGGMTLPFWMIYDDREGEVPPVKATNVSMVEAAKYRAAGLWRTADTLEELAAKIGVPADA  393 (515)
T ss_pred             ------CHHHHHHHHHHHHCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHH
T ss_conf             ------27689999995201688665469997601043567443454533758774258166459899999986959999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC---------------------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9998537999997643678654---------------------40---67520331001234215771585377888533
Q gi|254781043|r  333 LQERLPGISESARIFAGVDVTR---------------------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPER  388 (611)
Q Consensus       333 l~~~~~~~~~~~~~~~g~D~~~---------------------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t  388 (611)
                      |++....+++.+..-.+.|+.|                     -|   +++.|+.|+|+||++||.++||++.+++    
T Consensus       394 L~~Tv~~yN~~~~~G~D~dFgk~~~~~~r~~~~~~~~l~~i~~~PfYa~~~~~~~~~T~GGl~in~~~qVl~~~g~----  469 (515)
T PRK12837        394 LTATVARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDTAARVLDTDGR----  469 (515)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCCCCCEEECCCCC----
T ss_conf             9999999999985399966788863111223678876540677997999974454420768579998747899989----


Q ss_pred             CCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHH
Q ss_conf             2276034021220335664304-764322222232156775566
Q gi|254781043|r  389 FAPGLMAIGEAGCASVHGANRL-GSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       389 ~i~GLyAaGe~a~~g~hGanrl-ggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      +|||||||||++ +|+||.+|+ |||+|.+|+|||||||+++|.
T Consensus       470 pI~GLYAaGe~~-ggv~g~~Y~ggG~~lg~~~~FGriA~~~~ag  512 (515)
T PRK12837        470 PIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAVLDMAG  512 (515)
T ss_pred             EECCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             809966676655-5888798265578898899999999999845


No 48 
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=436.16  Aligned_cols=412  Identities=23%  Similarity=0.283  Sum_probs=282.3

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHCCC
Q ss_conf             32310588989968999999999988982999986898852104116534251378-----9999999999989984588
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIKGSDW   88 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~~g~~   88 (611)
                      -++||||||||+|+|||+||++|+++|++|+||||.+..+|+|.++.|+|.+....     ..+||++.+..++......
T Consensus         2 ~~ee~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~sgg~~~~~~t~~q~~~Gi~Ds~e~~~~~l~~~~~~   81 (560)
T PRK07843          2 TGQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVKDTPEAARTYLHSIIGD   81 (560)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             98665789989678999999999988998899969999770777723666637999999738988999999999986177


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCC-CCEE------------E--ECC----CCCCCCCCC----------
Q ss_conf             7799999999998899999999869-98132799-8551------------0--014----641145678----------
Q gi|254781043|r   89 LGDVDAIQYLAMEAPQSVYELEHYG-VPFSRNEA-GKIY------------Q--RPF----GGHMQNYGE----------  138 (611)
Q Consensus        89 l~d~~lv~~~~~~a~~~i~~Le~~G-v~f~r~~~-G~~~------------~--~~~----gg~~~~~~~----------  138 (611)
                      ..+++.++.+++++++.++||.+.. +.|.-.+. ..++            .  .++    .|.......          
T Consensus        82 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~w~~~~~d~~~~~~g~~~~g~~~~p~~~~~~~~g~~~~~l~~~~~~~p~~~  161 (560)
T PRK07843         82 VVEPERIDTYLDRGPEMLSFVLKHTPLKMCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLNV  161 (560)
T ss_pred             CCCHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             68999999998638999999996586317763677643434667732775124556651112654233466533355550


Q ss_pred             ------------CCCCCE-----------EEE------ECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCE
Q ss_conf             ------------765640-----------798------666542667899999987312303113156520001344301
Q gi|254781043|r  139 ------------GPPVQR-----------TCA------AADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCV  189 (611)
Q Consensus       139 ------------g~~~~R-----------~~~------~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~  189 (611)
                                  ....++           .+.      .....|..++..|...+++.||+++.++.+++||+| +|+|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~~-~g~V~  240 (560)
T PRK07843        162 VVMQQDYVRLNQLKRHPRGVLRSAKVGARTMWAKATGKNLVGMGRALIAPLRIGLRRAGVPVLLNTALTDLYVE-DGVVR  240 (560)
T ss_pred             EEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHEEEC-CCEEE
T ss_conf             21045588875301276531333332011001101465201441899999999999769879975732303651-98799


Q ss_pred             EEEEEEE---CCCEEEEECCC-CEEEECCCCCCC------CC-------CCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             2468980---58708995067-247415765654------33-------4210640144488788751365333322232
Q gi|254781043|r  190 GVVAWQL---ETGEIHRFSAK-LVVLATGGYGRA------YF-------SATSAHTCTGDGAGMVARAGLPLQDMEFVQF  252 (611)
Q Consensus       190 Gav~~~~---~~G~~~~i~Ak-aVILATGG~~~l------y~-------~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf  252 (611)
                      ||++.+.   .+|+...|+|| +||||||||+.-      |.       .+++++.+||||+.||.++||.+.+|+..++
T Consensus       241 GV~~~~~~~~~~g~~~~i~A~kgVVLATGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGdGi~ma~~~GA~~~~m~~~~~  320 (560)
T PRK07843        241 GVYVRDTHAAESGEPQLIRARRGVILASGGFEHNEQMRVKYQRAPITTEWTVGAKANTGDGILAAEKLGAALDLMDDAWW  320 (560)
T ss_pred             EEEEECCCCCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHCHHHCCC
T ss_conf             99995045555784699960563899379854299999972777556664458989886799999980951314112326


Q ss_pred             CCCCCCC--CEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC--------CC--CC---CCEEHHHHHHHH-HHC---CC
Q ss_conf             8884422--014304566557808983268612554076510--------04--75---201115688998-817---88
Q gi|254781043|r  253 HPTGIYG--AGCLITEGARGEGGYLVNSKGERFMERYAPSAK--------DL--AS---RDVVSRCMMMEI-REG---RG  313 (611)
Q Consensus       253 hPt~~~~--~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~--------el--~~---rd~~s~ai~~ei-~~g---~g  313 (611)
                      +|+....  +.+.+.+ ....|+++||.+|+||++|..+...        ..  .+   .+..++.|+.+- ++-   .+
T Consensus       321 ~p~~~~~~~~~~~~~~-~~~~g~i~Vn~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~I~D~~~~~~~~~~~  399 (560)
T PRK07843        321 GPTVPLVGGPWFALSE-RNSPGSIIVNMSGKRFMNESMPYVEACHHMYGGEYGQGPGPGENIPAWLVFDQRYRDRYIFAG  399 (560)
T ss_pred             CCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHC
T ss_conf             6743579986201000-157856998999986888886477789999876640266766785379997558865321202


Q ss_pred             CCCCC---------CEEE-EE-EC------CCCHHHHHHHHHHHHHHHHHHCCCCCCC--------------C-------
Q ss_conf             88888---------7468-86-11------1798999998537999997643678654--------------4-------
Q gi|254781043|r  314 VGKSK---------DHIH-LY-LN------HLDPAVLQERLPGISESARIFAGVDVTR--------------D-------  355 (611)
Q Consensus       314 ~~~~~---------~~v~-ld-~~------~~~~~~l~~~~~~~~~~~~~~~g~D~~~--------------~-------  355 (611)
                      ...+.         ..++ -| +.      .+|++.|++.+..+++.|....+.|+.+              .       
T Consensus       400 ~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gi~~~~L~~Tv~~yN~~~~~G~D~dFgr~~~~~~~~~gdp~~kp~~~l~~  479 (560)
T PRK07843        400 LQPGQRIPSRWLESGVIVKADTLAELAGKIGLPADALTATVQRFNGFARSGVDEDFHRGESAYDRYYGDPTNKPNPNLGE  479 (560)
T ss_pred             CCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             58676214778644854644889999999694999999999999988852998555777123321257756688845363


Q ss_pred             ----E---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHH
Q ss_conf             ----0---6752033100123421577158537788853322760340212203356643047-6432222223215677
Q gi|254781043|r  356 ----P---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRAAVI  427 (611)
Q Consensus       356 ----~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~Ag~  427 (611)
                          |   +++.|..|+|+||++||.++||++.+++    +|||||||||++ +|+||.+|+| |+||.+|+|||||||+
T Consensus       480 i~~~PfYA~~~~p~~~~T~GGl~in~~~qVL~~dg~----pIpGLYAaGe~~-gg~~g~~y~g~G~slg~~~~fGriAg~  554 (560)
T PRK07843        480 ISHPPFYAAKMVPGDLGTKGGLRTDVNGRVLRDDGS----VIPGLYAAGNVS-APVMGHTYAGPGGTIGPAMTFGYLAAL  554 (560)
T ss_pred             CCCCCEEEEEEEHHHCCCCCCCCCCCCCCEECCCCC----CCCCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             778998999987001345878319988725899988----809856885055-477879857404507889999999999


Q ss_pred             HHHHH
Q ss_conf             55665
Q gi|254781043|r  428 RASEM  432 (611)
Q Consensus       428 ~aa~~  432 (611)
                      +||..
T Consensus       555 ~aA~~  559 (560)
T PRK07843        555 DIAAQ  559 (560)
T ss_pred             HHHHC
T ss_conf             99844


No 49 
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=433.59  Aligned_cols=412  Identities=23%  Similarity=0.236  Sum_probs=273.6

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHCCCC
Q ss_conf             231058898996899999999998898299998689885210411653425137-----899999999999899845887
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIKGSDWL   89 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~~g~~l   89 (611)
                      +.||||||||+|.|||+||++|+|+|++|+||||.+..+|+|.++.|.+.+...     ....||++..+.++.......
T Consensus         3 tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~s~G~~~~~gt~~q~~~Gi~ds~e~~~~~~~~~~g~~   82 (567)
T PRK12842          3 ELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREQGVADSREAARTYLKSETGAF   82 (567)
T ss_pred             CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf             73059699896889999999999879908999779988856798487812089999997099789999999999862755


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEE-------------------ECCCCCCCCCCC--------C--
Q ss_conf             7999999999988999999998-699813279985510-------------------014641145678--------7--
Q gi|254781043|r   90 GDVDAIQYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQ-------------------RPFGGHMQNYGE--------G--  139 (611)
Q Consensus        90 ~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~-------------------~~~gg~~~~~~~--------g--  139 (611)
                      .|+++++.|++++++.++||++ .++.|....-..+..                   +..+........        +  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~dy~~~~~g~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~  162 (567)
T PRK12842         83 YDAAAVEAFLDNGPEMVAFFERETEVKFVPTLYPDYHPDAPGGVDIGRSIVAAPYDARGLGKDMARLKPPLKTITFIGMM  162 (567)
T ss_pred             CCHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCC
T ss_conf             88999999997279999999855686031256743246788872477502247766332140276516875433202300


Q ss_pred             -----C-----------------CCCE--------EEE---ECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCC
Q ss_conf             -----6-----------------5640--------798---666542667899999987312303113156520001344
Q gi|254781043|r  140 -----P-----------------PVQR--------TCA---AADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEG  186 (611)
Q Consensus       140 -----~-----------------~~~R--------~~~---~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG  186 (611)
                           .                 ..+|        ..+   ..-.+|..++..|.+.+++.||+++.++.+++||+| +|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~~~~Gv~i~~~t~~~~Li~d-~g  241 (567)
T PRK12842        163 FNSSNADLKHFFNATRSLTSFLYVAKRLANHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELITE-GG  241 (567)
T ss_pred             CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEC-CC
T ss_conf             02542677888763015420256666754101344411566534553899999999999759889957888898862-99


Q ss_pred             CCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------CC---------CCCCCCEECCHHHHHHHHHCCCCCCC--C
Q ss_conf             30124689805870899506-7247415765654------33---------42106401444887887513653333--2
Q gi|254781043|r  187 CCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------YF---------SATSAHTCTGDGAGMVARAGLPLQDM--E  248 (611)
Q Consensus       187 ~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y~---------~~t~~~~~tGdG~~mA~~aGa~l~~m--E  248 (611)
                      +|+||++.+ .+|+. .|+| |+||||||||++-      |.         .++.+.++||||+.||.++||.+.++  .
T Consensus       242 ~V~GV~a~~-~~g~~-~i~A~kgVILATGGf~~N~em~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~~~~~~~~  319 (567)
T PRK12842        242 RVVGARVGD-GGGER-RITARRGVVLACGGFPHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAAGGAVDIRLPD  319 (567)
T ss_pred             EEEEEEEEE-CCCEE-EEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             799999996-89559-9981333899038855499999863823346765345788888659999999828775555665


Q ss_pred             CCCCCCCCCCC-C----EEECCCCCC-CCCEEEEECCCCCCCCCCCCCC--C-----------CCCCCCEEHHHHHHHHH
Q ss_conf             22328884422-0----143045665-5780898326861255407651--0-----------04752011156889988
Q gi|254781043|r  249 FVQFHPTGIYG-A----GCLITEGAR-GEGGYLVNSKGERFMERYAPSA--K-----------DLASRDVVSRCMMMEIR  309 (611)
Q Consensus       249 f~qfhPt~~~~-~----~~l~~~~~r-g~G~~l~n~~Gerf~~~y~~~~--~-----------el~~rd~~s~ai~~ei~  309 (611)
                      +.+++|....+ +    +++.....+ ..|.++||.+|+||++|..+..  .           +....-|.-.+...+..
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~  399 (567)
T PRK12842        320 AAAWMPVSKVPMGNGETGVFPHLLDRYKPGVIAVLRNGKRFTNESNSYHDVGAAMIKACRGQKETAMWLICDRATLRKYG  399 (567)
T ss_pred             CEEECCCCCCCCCCCCEEECHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHC
T ss_conf             40231444666899864324124533588468777888753678776668999999971279997589998899997614


Q ss_pred             HCCCCCCC--------CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------------
Q ss_conf             17888888--------87468-86-1------11798999998537999997643678654-------------------
Q gi|254781043|r  310 EGRGVGKS--------KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR-------------------  354 (611)
Q Consensus       310 ~g~g~~~~--------~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~-------------------  354 (611)
                      .+.-.+..        ...++ -| +      -.+|++.|++.+..+++.+..-.+.|+.|                   
T Consensus       400 ~g~~~~~~~~~~~~~~~g~~~kadTleELA~~~gvd~~~L~~TV~~yN~~~~~G~D~dFgk~~~~~~~~~~dp~~~p~~~  479 (567)
T PRK12842        400 LGFVKPAPMPLGPLLRNGYLIRGDTLAELAGKAGIDAAGLEETVRRYNVGAVKGIDPAFGRGSTSFNRYLGDPENKPNPC  479 (567)
T ss_pred             CCCCCCCCCCHHHHHHCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             24357776344777537807872999999988396999999999999877402988233666412331146744588712


Q ss_pred             ------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHH
Q ss_conf             ------40---6752033100123421577158537788853322760340212203356643047-6432222223215
Q gi|254781043|r  355 ------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRA  424 (611)
Q Consensus       355 ------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~  424 (611)
                            -|   +++.|..|+|||||+||.++||++.+++    +|||||||||++ +|+||.||+| |+||.+|+||||+
T Consensus       480 l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~----pIpGLYAaG~~~-gg~~g~~y~g~G~slg~~~~fGri  554 (567)
T PRK12842        480 VAPIGSGPFYAVKVIMGDLGTFDGLATDVVGRVLDADGT----AIAGLYAVGNDR-ASIMGGNYPGAGITLGPIMTFGYI  554 (567)
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCEECCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             165778997999977020616878119998735899979----859975675555-587989867506758889999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             6775566542
Q gi|254781043|r  425 AVIRASEMID  434 (611)
Q Consensus       425 Ag~~aa~~~~  434 (611)
                      ||++||..+-
T Consensus       555 Ag~~aA~~~~  564 (567)
T PRK12842        555 TARHLAGVAG  564 (567)
T ss_pred             HHHHHHHHCC
T ss_conf             9999997417


No 50 
>KOG2404 consensus
Probab=100.00  E-value=0  Score=442.89  Aligned_cols=375  Identities=33%  Similarity=0.492  Sum_probs=298.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             58898996899999999998898299998689885210411653425137899-----9999999998998458877999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-----PDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-----~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      -|+|||+|+|||+|+.+.-..|-.|+|+||....+|+|+-|+-|||++-.+.+     .|||+.++.||+..+++.++|+
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e   90 (477)
T KOG2404          11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE   90 (477)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             07998774032356777874487599982467767752010257677761456531656676777640243203478689


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEC--CCCCHHHHHHHHHHHHHC---
Q ss_conf             999999988999999998-69981327998551001464114567876564079866--654266789999998731---
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAA--DRTGHAILHTLYGQALKN---  167 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~--d~tG~~i~~~L~~~~~~~---  167 (611)
                      |++.++.+|+.+|+||.. .++..+.     +  ...|||        ++||++...  .--|.+|+.+|..+..+.   
T Consensus        91 Lm~~La~~S~~AvewL~~ef~lkld~-----l--a~lgGH--------SvpRTHr~s~plppgfei~~~L~~~l~k~as~  155 (477)
T KOG2404          91 LMEKLAANSASAVEWLRGEFDLKLDL-----L--AQLGGH--------SVPRTHRSSGPLPPGFEIVKALSTRLKKKASE  155 (477)
T ss_pred             HHHHHHHCCHHHHHHHHHHCCCCHHH-----H--HHHCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99998736887899986330626689-----9--872587--------87753456899999608999999998876531


Q ss_pred             ---CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC-------CC------CCCCCCCEECC
Q ss_conf             ---230311315652000134430124689805870899506724741576565-------43------34210640144
Q gi|254781043|r  168 ---NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR-------AY------FSATSAHTCTG  231 (611)
Q Consensus       168 ---gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~-------ly------~~~t~~~~~tG  231 (611)
                         -++++.++.+++++ +++|+|.|++-.| .+|+-..+.+..||+|||||+-       .|      .++||.+.+||
T Consensus       156 ~pe~~ki~~nskvv~il-~n~gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tG  233 (477)
T KOG2404         156 NPELVKILLNSKVVDIL-RNNGKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTG  233 (477)
T ss_pred             CHHHHHHHHCCEEEEEE-CCCCEEEEEEEEC-CCCCCCCEECCCEEEECCCCCCCHHHHHHHHCHHHCCCCCCCCCCCCC
T ss_conf             80777323136245644-2788077799975-789725010473699527767576899988386652477678874368


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCE-------EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHH
Q ss_conf             488788751365333322232888442201-------4304566557808983268612554076510047520111568
Q gi|254781043|r  232 DGAGMVARAGLPLQDMEFVQFHPTGIYGAG-------CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM  304 (611)
Q Consensus       232 dG~~mA~~aGa~l~~mEf~qfhPt~~~~~~-------~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai  304 (611)
                      ||+.|-.+.||.|.||..+|.|||++..|.       +|--|+.||.||+|+|..|+||.+       ||..||++.-.|
T Consensus       234 Dgqk~l~klga~liDmd~vqvhptgfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~n-------ELg~RDyvTgei  306 (477)
T KOG2404         234 DGQKMLMKLGASLIDMDQVQVHPTGFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGN-------ELGTRDYVTGEI  306 (477)
T ss_pred             CHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHC-------CCCCCHHHHHHH
T ss_conf             4788898727441145204753467559887205788989998556762788334403220-------334310103767


Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCC--------------------------------HHHHHHHHHHHHHHHHHHCCC--
Q ss_conf             8998817888888874688611179--------------------------------899999853799999764367--
Q gi|254781043|r  305 MMEIREGRGVGKSKDHIHLYLNHLD--------------------------------PAVLQERLPGISESARIFAGV--  350 (611)
Q Consensus       305 ~~ei~~g~g~~~~~~~v~ld~~~~~--------------------------------~~~l~~~~~~~~~~~~~~~g~--  350 (611)
                      +.-    . ++.....++|-+...-                                +..|...|..+..   .+.|.  
T Consensus       307 ~kl----~-~P~ednrallVmnea~~e~~~n~inFY~~K~l~kK~~~~el~s~ln~t~sel~ttl~eY~~---~~~g~~~  378 (477)
T KOG2404         307 QKL----K-CPIEDNRALLVMNEANYEAFGNNINFYMFKKLFKKYESAELASALNITESELKTTLEEYSK---SFTGKSE  378 (477)
T ss_pred             HHH----C-CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHCCCCC
T ss_conf             751----3-8754660578834768999852103572898999864999999869889999999999877---5338888


Q ss_pred             CCCC------------CEE---EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             8654------------406---7520331001234215771585377888533227603402122033566430476432
Q gi|254781043|r  351 DVTR------------DPI---PVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSL  415 (611)
Q Consensus       351 D~~~------------~~i---~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl  415 (611)
                      ||.-            +++   ||.|.+||||||++||+..||++.+++    .|.|||||||+. +|+||+|||||+||
T Consensus       379 D~fgrk~f~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~ng~----vi~GlfAAGEvs-GGvHGaNRLgGsSL  453 (477)
T KOG2404         379 DPFGRKVFPVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKNGK----VIVGLFAAGEVS-GGVHGANRLGGSSL  453 (477)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCEEECHHHHHHCCCCC----EEEEEEECCEEC-CCCCCCCCCCCCCC
T ss_conf             8678711257788756406888776368885164675123210135895----766656724221-55245555576333


Q ss_pred             CCCCCCCHHHHHHHH
Q ss_conf             222223215677556
Q gi|254781043|r  416 IDLVVFGRAAVIRAS  430 (611)
Q Consensus       416 ~~~~vfG~~Ag~~aa  430 (611)
                      ++|+||||+||+.|.
T Consensus       454 LeCVVFGr~Ag~~A~  468 (477)
T KOG2404         454 LECVVFGRTAGKAAQ  468 (477)
T ss_pred             EEEEEECCCCHHHHH
T ss_conf             012552110106677


No 51 
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=426.84  Aligned_cols=417  Identities=22%  Similarity=0.218  Sum_probs=273.7

Q ss_pred             CCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC-----CCCCCHHHHHHHHHH
Q ss_conf             441332310588989968999999999988982999986898852104116534251378-----999999999998998
Q gi|254781043|r   10 SYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN-----MTPDSWQWHLYDTIK   84 (611)
Q Consensus        10 ~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-----~~~Ds~~~~~~Dt~~   84 (611)
                      .|++ |.||||||||+|+|||+||++|++.|++|+||||.+..+|+|.++.|++.+....     ...||++....++..
T Consensus         4 ~~~w-D~e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~sgG~~~~~~t~~q~~~Gi~ds~e~~~~~~~~   82 (579)
T PRK06134          4 AYPP-DLECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRH   82 (579)
T ss_pred             CCCC-CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEECCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf             7897-577186998967899999999998799489997999887367773874301899999971998899999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCC-CEE-E---ECCCCCCCCC----------------------
Q ss_conf             458877999999999988999999998-69981327998-551-0---0146411456----------------------
Q gi|254781043|r   85 GSDWLGDVDAIQYLAMEAPQSVYELEH-YGVPFSRNEAG-KIY-Q---RPFGGHMQNY----------------------  136 (611)
Q Consensus        85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~G-~~~-~---~~~gg~~~~~----------------------  136 (611)
                      ......|+++++.+++++++.++||++ .++.|.-...- .++ .   ...+|++...                      
T Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (579)
T PRK06134         83 ELGAYYDAARIDAFLEAGPHMVAFFEKHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRRLGALLERLRKPLRET  162 (579)
T ss_pred             HHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             62646899999999973799999999567723430676654343477865477523445576776322567635742442


Q ss_pred             --------------------------------CCCCCCCEEEEEC---CCCCHHHHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf             --------------------------------7876564079866---65426678999999873123031131565200
Q gi|254781043|r  137 --------------------------------GEGPPVQRTCAAA---DRTGHAILHTLYGQALKNNAEFFIEYFALDLI  181 (611)
Q Consensus       137 --------------------------------~~g~~~~R~~~~~---d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li  181 (611)
                                                      ...+.+.+..+..   -..|..++..|.+.+++.||+++.++++++||
T Consensus       163 ~~~g~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~lv~~l~~~~~~~gv~i~~~t~~~~Li  242 (579)
T PRK06134        163 SFLGMPIMAGADLAAFLNPTRSLRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSARDLGVRIWESAPARELL  242 (579)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEE
T ss_conf             12576322347778876510351123333232211034444226654355508999999999997498899457320665


Q ss_pred             ECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------CC---------CCCCCCEECCHHHHHHHHHCCCCC
Q ss_conf             0134430124689805870899506-7247415765654------33---------421064014448878875136533
Q gi|254781043|r  182 INSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------YF---------SATSAHTCTGDGAGMVARAGLPLQ  245 (611)
Q Consensus       182 ~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y~---------~~t~~~~~tGdG~~mA~~aGa~l~  245 (611)
                      .| +|+|+||++..  ++....|+| |+||||||||+.-      |.         .+++++++||||+.||.++||.+.
T Consensus       243 ~d-~g~V~Gv~~~~--~~~~~~i~A~kaVILATGGf~~N~em~~~~~~~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~~  319 (579)
T PRK06134        243 RE-DGRVAGAVVER--PGGLQRIRARKGVVLAAGGFPHDPARRAELFPRAPTGHEHLSLPPPGNTGDGLRLGEQAGGVVA  319 (579)
T ss_pred             EC-CCEEEEEEEEE--CCCEEEEEECCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             03-99799999997--8946999822328982588665999998624147886455556899988289999998397423


Q ss_pred             C--CCCCCCCCCCCCCC--E---EECCCCCCC-CCEEEEECCCCCCCCCCCCCCC------C-CCC-CCEEHHHHHHH-H
Q ss_conf             3--32223288844220--1---430456655-7808983268612554076510------0-475-20111568899-8
Q gi|254781043|r  246 D--MEFVQFHPTGIYGA--G---CLITEGARG-EGGYLVNSKGERFMERYAPSAK------D-LAS-RDVVSRCMMME-I  308 (611)
Q Consensus       246 ~--mEf~qfhPt~~~~~--~---~l~~~~~rg-~G~~l~n~~Gerf~~~y~~~~~------e-l~~-rd~~s~ai~~e-i  308 (611)
                      +  +..++.+|+...+.  +   .+.....++ .|.++||.+|+||++|..+...      + ..+ .+..++.|+.+ +
T Consensus       320 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~g~I~VN~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~  399 (579)
T PRK06134        320 TDLASPVAWAPVSRVPHADGSVGHFPHIIERGKPGLIGVLANGKRFVNEADSYHDYVAAMFAATPPGDPVRSWLICDHRF  399 (579)
T ss_pred             CCCCCCCEECCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHH
T ss_conf             67555640234125678888501131466516984699899997857677757589999997403489875799988899


Q ss_pred             HH--CCCCCCC----------CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC--------------
Q ss_conf             81--7888888----------87468-86-1------11798999998537999997643678654--------------
Q gi|254781043|r  309 RE--GRGVGKS----------KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR--------------  354 (611)
Q Consensus       309 ~~--g~g~~~~----------~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~--------------  354 (611)
                      .+  +.+....          ...+. -| +      -.+|++.|++.+..+++.|....+.|+.|              
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTv~~YN~~~~~G~D~dFgr~~~~~~~~~gd~~~  479 (579)
T PRK06134        400 LRRYGLGHVRPAPLPLGPYVRSGYLKRGASIEELARACGIDPDGLEATVTRYNRHARTGQDPDFGRGSTPYNRKQGDPAH  479 (579)
T ss_pred             HHHCCCCCCCCCCCCHHHHHHCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf             86514344677762347786378068619999999885959899999999999998519984447676311112476334


Q ss_pred             ------------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ------------40---675203310012342157715853778885332276034021220335664304764322222
Q gi|254781043|r  355 ------------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLV  419 (611)
Q Consensus       355 ------------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~  419 (611)
                                  .|   +++.|..|+|||||+||.++||++.+++    +||||||||+++++.+||.++++|++|.+|+
T Consensus       480 ~~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~~g~----pIpGLYAaG~~~gg~~~~~y~~~G~slg~~~  555 (579)
T PRK06134        480 KGPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQAGQ----PIPGLYAAGNDMASVFGGFYPSGGITLGPAL  555 (579)
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCC----EECCEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             788755475667996999987210547879659998705899979----8499846563434678888786187798999


Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             232156775566542
Q gi|254781043|r  420 VFGRAAVIRASEMID  434 (611)
Q Consensus       420 vfG~~Ag~~aa~~~~  434 (611)
                      |||||||++||....
T Consensus       556 ~fGriAG~~aA~~~~  570 (579)
T PRK06134        556 TFGYIAGRHIAGASG  570 (579)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999999999986463


No 52 
>pfam02910 Succ_DH_flav_C domain. This family contains fumarate reductases, succinate dehydrogenases and L-aspartate oxidases.
Probab=100.00  E-value=4.1e-37  Score=261.36  Aligned_cols=127  Identities=47%  Similarity=0.773  Sum_probs=121.0

Q ss_pred             HHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             98788766509726875899999999999999998415157877545889999998888999999999999626255046
Q gi|254781043|r  470 REKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS  549 (611)
Q Consensus       470 ~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~  549 (611)
                      +++||++||+||||+|++++|++|+++|+.|++++.++.+.+.+..||++|++++|+.||+.+|++++.|||+|+||||+
T Consensus         1 R~eLq~~M~~~~Gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~l~~~~El~nml~~a~~i~~aAl~R~ESRGa   80 (127)
T pfam02910         1 RKELQEIMQNHAGVFRTEEGLEEALEKIKELRERFKNVRVDDKSKVFNTDLIEALELGNLLELAEAIATSALARKESRGA   80 (127)
T ss_pred             CHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             97899999826785888899999999999999997615236765332668999999841999999999998616556442


Q ss_pred             EECCCCCCCCCCCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             23533778876668803213569999846898059999447444256755000027721679
Q gi|254781043|r  550 HAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       550 H~R~DyPe~~~~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
                      |||.|||+     |||+||+|||+++++ .+|+++++|+||.         ++.|+|++|+|
T Consensus        81 H~R~DyPe-----rdD~~wl~~t~~~~~-~~g~~~~~~~pv~---------~~~~~P~~R~Y  127 (127)
T pfam02910        81 HYREDYPE-----RDDENWLKHTLAYYD-GDGKPRLDYEPVV---------ITRIPPKERSY  127 (127)
T ss_pred             EECCCCCC-----CCCCCCCEEEEEEEC-CCCCEEEEEECCE---------EEEECCCCCCC
T ss_conf             52477897-----764210048999998-9997478863215---------77778744779


No 53 
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobZ, which is essential for cobalamin biosynthesis  and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=100.00  E-value=2.6e-33  Score=236.48  Aligned_cols=382  Identities=22%  Similarity=0.255  Sum_probs=248.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHCCCCEEEECCC-----CCCCC--HHHHHHHHHHHCCC
Q ss_conf             058898996899999999998898299998689885--2104116534251378-----99999--99999989984588
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR--SHTVAAQGGIAASLAN-----MTPDS--WQWHLYDTIKGSDW   88 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~--g~s~~A~GGi~a~~~~-----~~~Ds--~~~~~~Dt~~~g~~   88 (611)
                      .||||||+|+|||||||+|++.|++|+|||-+|..+  ||+.  . |=|--+..     ...|+  -|.+.+|..+-..+
T Consensus         2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNar--H-gRN~R~~hd~p~d~~~D~YpaEEf~~dL~~vtgg   78 (467)
T TIGR02485         2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNAR--H-GRNLRVAHDIPLDFLRDAYPAEEFRRDLLKVTGG   78 (467)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--C-CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             237887642588999999863796798402478532578653--3-3451110157888645787378999875431278


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             77999999999988999999998699813279985510014641145678765640798666542667899999987312
Q gi|254781043|r   89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN  168 (611)
Q Consensus        89 l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g  168 (611)
                      ..|+.+.+.+++++-....||.+.||.|.-.-.|.+..               .+|++|--+. |++|+.+|+.++++.|
T Consensus        79 ~t~~~l~~L~i~r~s~~~~w~~~~GVhl~P~~aG~lpy---------------sRrtaF~~GG-GkAl~NAly~sAerLG  142 (467)
T TIGR02485        79 RTDERLARLLIERASSILRWLIAHGVHLQPAAAGVLPY---------------SRRTAFLLGG-GKALVNALYASAERLG  142 (467)
T ss_pred             CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCH---------------HHCCCCCCCC-HHHHHHHHHHHHHHCC
T ss_conf             74115789988720023689996794336632565760---------------1111123576-1899999999885557


Q ss_pred             CEEECCCEEEEEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCC--C-----CCCCC------------CCCE
Q ss_conf             303113156520001344-30124689805870899506724741576565--4-----33421------------0640
Q gi|254781043|r  169 AEFFIEYFALDLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGR--A-----YFSAT------------SAHT  228 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~--l-----y~~~t------------~~~~  228 (611)
                      |+|.++..|.+|..+++| +..++...   ++.-..|.+|+||||+||++-  -     |.++-            ..+.
T Consensus       143 v~Iry~~~V~ri~~~~~g~~~i~~~~v---~~~~~rI~t~a~VlaaGG~ganr~WLr~~~G~~a~geWPadn~~~RGTpy  219 (467)
T TIGR02485       143 VEIRYDAEVERIEREEDGRAFIAARLV---AAADERIATKAVVLAAGGLGANREWLRKAFGSRAEGEWPADNFLVRGTPY  219 (467)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCEEE---ECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHCEEECCCCH
T ss_conf             254147730002645678620121466---22688122468888617888897999983688757788511001258802


Q ss_pred             ECCHHHHHHHH-HCCCCCCCCCCCCC--CCC----CCCCEEE--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC--
Q ss_conf             14448878875-13653333222328--884----4220143--0456655780898326861255407651004752--
Q gi|254781043|r  229 CTGDGAGMVAR-AGLPLQDMEFVQFH--PTG----IYGAGCL--ITEGARGEGGYLVNSKGERFMERYAPSAKDLASR--  297 (611)
Q Consensus       229 ~tGdG~~mA~~-aGa~l~~mEf~qfh--Pt~----~~~~~~l--~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~r--  297 (611)
                      +.|-=+..++. +||.-...- .|-|  |-+    ++..|+.  |+-.   .=|+.||.+|+||-++    +...-|.  
T Consensus       220 ~~G~LL~~ll~d~Ga~aiGdP-t~~HvVavDaRaP~~DgGIvtRid~~---~lG~VV~r~G~Rf~de----Ga~~~P~ry  291 (467)
T TIGR02485       220 AKGRLLKLLLDDEGADAIGDP-TDAHVVAVDARAPLYDGGIVTRIDSV---SLGVVVDRDGERFADE----GADSQPKRY  291 (467)
T ss_pred             HCCHHHHHHHHHCCCCCCCCC-CCCCEEEECCCCCCCCCCEEEEECEE---ECCEEECCCCCCHHHC----CCCCCCCEE
T ss_conf             102689999854164303779-87306765688884578357441212---1131788977612413----667788413


Q ss_pred             CEEHHHHHHH-----------HHHCCCCCCCCCEEEEE-------ECCCCHHHHHHHHHHHHH-------------HHHH
Q ss_conf             0111568899-----------88178888888746886-------111798999998537999-------------9976
Q gi|254781043|r  298 DVVSRCMMME-----------IREGRGVGKSKDHIHLY-------LNHLDPAVLQERLPGISE-------------SARI  346 (611)
Q Consensus       298 d~~s~ai~~e-----------i~~g~g~~~~~~~v~ld-------~~~~~~~~l~~~~~~~~~-------------~~~~  346 (611)
                      .+|.|.|...           -..+|-.+.--.++.-|       .--+|++.|.+.+..+..             -|..
T Consensus       292 a~Wgr~~a~~Pgq~ay~lld~~a~~r~~P~a~pp~~Adtl~eLA~~lgidp~~l~~tld~~naaprvGqfdhttlddCht  371 (467)
T TIGR02485       292 AVWGRRVADRPGQLAYLLLDAKALKRLAPSALPPVKADTLEELAAKLGIDPDALAETLDAYNAAPRVGQFDHTTLDDCHT  371 (467)
T ss_pred             ECHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC
T ss_conf             00136763589851532432057863587456978888879999985888889998650678787666555531000013


Q ss_pred             HCCCCCCCC----EE--------EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             436786544----06--------752033100123421577158537788853322760340212203356643047643
Q gi|254781043|r  347 FAGVDVTRD----PI--------PVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNS  414 (611)
Q Consensus       347 ~~g~D~~~~----~i--------~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggns  414 (611)
                       .|+=|.|.    +|        |..|.+-|+-=||.||...+|...++.    .-+.|||||+..|+-+=|-.+|+|.+
T Consensus       372 -eGvvPak~~~ar~i~v~Pf~aypm~PG~tFt~yGl~vDatarVr~nd~~----~~~~LFaAG~~MagnvLg~GYlaG~G  446 (467)
T TIGR02485       372 -EGVVPAKATAARTIAVVPFYAYPMKPGVTFTRYGLKVDATARVRLNDAR----ASDDLFAAGEIMAGNVLGKGYLAGAG  446 (467)
T ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -5664442345656533773220356785146505021122444542588----97247889889999873102322115


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q ss_conf             22222232156775566542
Q gi|254781043|r  415 LIDLVVFGRAAVIRASEMID  434 (611)
Q Consensus       415 l~~~~vfG~~Ag~~aa~~~~  434 (611)
                      |+=+.|||+|||+.||..+.
T Consensus       447 ~T~~AVFG~IAG~~AAR~~~  466 (467)
T TIGR02485       447 LTLAAVFGRIAGREAARLVR  466 (467)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
T ss_conf             67778863567889852058


No 54 
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.97  E-value=4.1e-28  Score=202.48  Aligned_cols=343  Identities=24%  Similarity=0.285  Sum_probs=201.6

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      |||+|||+|+|||+||+.|++.|++|+|+||.+.... -..++||=.+-+.+.  -+++.++.      .+-.+++.++.
T Consensus         1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~Gk-Kll~tG~GRCN~TN~--~~~~~~~~------~~~~~~~fl~~   71 (405)
T pfam03486         1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGR-KILISGGGRCNVTNS--VEPDNFLS------RYPGNPHFLKS   71 (405)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-EEEECCCCCCEECCC--CCHHHHHH------HCCCCHHHHHH
T ss_conf             9799999669999999999868995999958998750-158826896140789--99799986------25775799999


Q ss_pred             HHHH--HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             9998--89999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r   98 LAME--APQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        98 ~~~~--a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                      ....  ..+.++|++++|+++...++|+++..                 +    + ....++.+|..++.+.||+++.++
T Consensus        72 ~l~~F~~~d~~~ff~~~Gl~~~~e~~GrvfP~-----------------s----~-~A~~Vl~~L~~~l~~~gV~i~~~~  129 (405)
T pfam03486        72 ALSRFTPWDFIAWFEELGVPLKEEDHGRLFPV-----------------S----D-KASDIVDALLNELKELGVKIRTRT  129 (405)
T ss_pred             HHHHCCHHHHHHHHHHCCCEEEECCCCEEECC-----------------C----C-CHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             99848999999999977990597789979789-----------------8----9-869999999999997797899588


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             56520001344301246898058708995067247415765654334210640144488788751365333322232888
Q gi|254781043|r  176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT  255 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt  255 (611)
                      .+.++..++++ +..+   ... ++  .|.|++|||||||.+  | +.   .+++|+|+.+|-+.|-.+..+     +|.
T Consensus       130 ~V~~I~~~~~~-~~~v---~~~-~~--~~~a~~vIlAtGG~s--~-p~---~GS~G~gy~~a~~lGh~i~~~-----~Pa  191 (405)
T pfam03486       130 RVLSVEKDDDG-RFRV---DTG-GE--ELEADSLVLATGGLS--W-PK---TGSTGFGYPLAEQFGHTIIPL-----RPA  191 (405)
T ss_pred             EEEEEEECCCC-EEEE---EEC-CC--EEEECEEEEECCCCC--C-CC---CCCCHHHHHHHHHCCCCCCCC-----CCE
T ss_conf             87899975994-5999---948-95--897278999048866--5-65---577505999999749972457-----771


Q ss_pred             C--CCCCE-EECCC---CCCCCCEEEEECC------CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             4--42201-43045---6655780898326------86125540765100475201115688998817888888874688
Q gi|254781043|r  256 G--IYGAG-CLITE---GARGEGGYLVNSK------GERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHL  323 (611)
Q Consensus       256 ~--~~~~~-~l~~~---~~rg~G~~l~n~~------Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~l  323 (611)
                      -  +.... .+...   +++-....+.+.+      ||=....|.-.+.  +-- -+|+.+..+..+..     ...+.+
T Consensus       192 Lv~l~~~~~~~~~~~L~Gv~~~~~~~~~~~~~~~~~GellfT~~GlSGp--~il-~lS~~~~~~l~~~~-----~~~i~i  263 (405)
T pfam03486       192 LVPFTIDESFLFLKRLSGISLKNVVLSKGKGGISFRGELLFTHRGLSGP--AIL-QLSSYWRRAILKKG-----GVTLSI  263 (405)
T ss_pred             ECCEEECCCHHHHHCCCCCCCCCEEEECCCCCEEEECCEEEECCCCCCH--HHH-HHHHHHHHHHHHCC-----CCEEEE
T ss_conf             1324606863344236996221568862787257841379975885644--898-87799999997579-----945999


Q ss_pred             EEC-CCCHHHHHHHHHH---------------------HHHHHHHHCCCCCCC-------------------CEEEEEC-
Q ss_conf             611-1798999998537---------------------999997643678654-------------------4067520-
Q gi|254781043|r  324 YLN-HLDPAVLQERLPG---------------------ISESARIFAGVDVTR-------------------DPIPVIP-  361 (611)
Q Consensus       324 d~~-~~~~~~l~~~~~~---------------------~~~~~~~~~g~D~~~-------------------~~i~v~p-  361 (611)
                      |+- .+..+.+.+++..                     +.....+..++|+.+                   -+++|.. 
T Consensus       264 d~~P~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~l~~~~~~~l~~~lk~~~~~i~g~  343 (405)
T pfam03486       264 DLLPDLDAEELAARLEKPRGAHPKKSLKNALAGLLPKRLALFLLEQAGIDPDKKLAQLSKKDLAALADLLKAWPFTVNGT  343 (405)
T ss_pred             EECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCEEECCCC
T ss_conf             81799999999999999988682323999888775899999999971998688636579999999999986697562576


Q ss_pred             ----CCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             ----331001234215771585377888533-227603402122033566430476432222223215677
Q gi|254781043|r  362 ----TVHYNMGGIPTNYWGEVLDANSKNPER-FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVI  427 (611)
Q Consensus       362 ----~~hy~~GGi~vd~~g~v~~~~~~~~~t-~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~  427 (611)
                          -++-|.|||.+++    +  +.+++++ .+||||.|||+-  -+.|  ..||.-|-.|+..|++||+
T Consensus       344 ~~~~~A~vT~GGV~~~e----i--~~~TmeSk~~pgLyf~GEvL--Dvdg--~~GGYNLq~AwssG~~AG~  404 (405)
T pfam03486       344 EGYRTAFVTAGGVDTKE----I--SSKTMESKKVPGLFFAGEVL--DVDG--WTGGYNLQWAWASGYAAGQ  404 (405)
T ss_pred             CCCCEEEEECCCCCHHH----C--CHHHHHHCCCCCEEEEEEEE--EECC--CCCCHHHHHHHHHHHHHHC
T ss_conf             88771698179764666----1--86667432799858999727--6035--8878999999999999759


No 55 
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.97  E-value=1.2e-28  Score=205.88  Aligned_cols=399  Identities=23%  Similarity=0.278  Sum_probs=241.1

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHCCCCEEEECCCC-----CCCCHHHHHHHHHHHCCC
Q ss_conf             31058898996899999999998898299998689--88521041165342513789-----999999999989984588
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF--PTRSHTVAAQGGIAASLANM-----TPDSWQWHLYDTIKGSDW   88 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~--~~~g~s~~A~GGi~a~~~~~-----~~Ds~~~~~~Dt~~~g~~   88 (611)
                      .++||||||+|+|||.||.++++.|.+|++++...  -..|...++-||.--+....     ..||.+.-.+|.+-.. .
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA-~   82 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTA-A   82 (552)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCEEEECCHHHHHCCCCHHHHHHHHHHHCCC-C
T ss_conf             644279987527988999988726765999705554565651343126378846878822155204778877543012-4


Q ss_pred             CCCHH------HHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             77999------99999998-899999999869981327998551001464114567876564079866654266789999
Q gi|254781043|r   89 LGDVD------AIQYLAME-APQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY  161 (611)
Q Consensus        89 l~d~~------lv~~~~~~-a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~  161 (611)
                      .-+|+      .++.|.+- +.+.-.||.+.|+.|--.-  -+   .+.|-+.....|.++|| .|....||..++....
T Consensus        83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvV--GW---AERGG~~A~ghGNSVPR-FHiTWGTGPgvl~pFv  156 (552)
T COG3573          83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVV--GW---AERGGSDAQGHGNSVPR-FHITWGTGPGVLEPFV  156 (552)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEC--CC---HHHCCCCCCCCCCCCCC-EEEEECCCCCHHHHHH
T ss_conf             688400053789999876641531578997287143101--20---42077666788887763-5876168864365999


Q ss_pred             HHHHH---C-CCEEECCCEEEEEEECCCCCCEEEEEEEE--------------CCCEEEEECCCCEEEECCCCCCC----
Q ss_conf             99873---1-23031131565200013443012468980--------------58708995067247415765654----
Q gi|254781043|r  162 GQALK---N-NAEFFIEYFALDLIINSEGCCVGVVAWQL--------------ETGEIHRFSAKLVVLATGGYGRA----  219 (611)
Q Consensus       162 ~~~~~---~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~--------------~~G~~~~i~AkaVILATGG~~~l----  219 (611)
                      +++++   . -|++..++.+-.|++. +|+|+|+-+--+              ..|.| .|.|.+||+++||.++-    
T Consensus       157 r~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdF-ef~A~aviv~SGGIGGnhelV  234 (552)
T COG3573         157 RRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDF-EFSASAVIVASGGIGGNHELV  234 (552)
T ss_pred             HHHHHHHHCCCEEEEEEEECCCEEEE-CCEEEEECCCCCCCCCCCCCCCCCCEEECCE-EEEEEEEEEECCCCCCCHHHH
T ss_conf             99999875783389854011526853-8767610033217884456897643010325-776205999458768888888


Q ss_pred             --CCC------------CCCCCEECCHHHHHHHHHCCCCCCCCC-CCCCCCCC-------CCCEEECCCCCCCCCEEEEE
Q ss_conf             --334------------210640144488788751365333322-23288844-------22014304566557808983
Q gi|254781043|r  220 --YFS------------ATSAHTCTGDGAGMVARAGLPLQDMEF-VQFHPTGI-------YGAGCLITEGARGEGGYLVN  277 (611)
Q Consensus       220 --y~~------------~t~~~~~tGdG~~mA~~aGa~l~~mEf-~qfhPt~~-------~~~~~l~~~~~rg~G~~l~n  277 (611)
                        +++            +--|....|-.+.++..||+.+.|-.- +.| .-++       +..++-|-   -|....+++
T Consensus       235 RrnWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHY-tEGirNwdPiWp~HgIRIl---PGPSSlWlD  310 (552)
T COG3573         235 RRNWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHY-TEGIRNWDPIWPNHGIRIL---PGPSSLWLD  310 (552)
T ss_pred             HHCCCHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCEEH-HHCCCCCCCCCCCCCEEEC---CCCCCEEEC
T ss_conf             752956550897588762886013622677888707824465311013-2145567876766650654---687322387


Q ss_pred             CCCCCCCCCCCCCCCCCCC------------CCEEHHHHH-HHH---------------------HHCCCCCCC------
Q ss_conf             2686125540765100475------------201115688-998---------------------817888888------
Q gi|254781043|r  278 SKGERFMERYAPSAKDLAS------------RDVVSRCMM-MEI---------------------REGRGVGKS------  317 (611)
Q Consensus       278 ~~Gerf~~~y~~~~~el~~------------rd~~s~ai~-~ei---------------------~~g~g~~~~------  317 (611)
                      +.|+|.-.-..|...-|.+            .-+..+.|. +|.                     +.+++.+.+      
T Consensus       311 a~G~RLp~P~~PGfdtlgTL~hi~~~G~~ysWFiLt~kiI~kEFaLSGsEQNPDLTGkd~rlll~Ra~k~pPgPV~AFmd  390 (552)
T COG3573         311 AAGKRLPVPLFPGFDTLGTLKHITSTGYDYSWFILTRKIIKKEFALSGSEQNPDLTGKDLRLLLRRAGKGPPGPVQAFMD  390 (552)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             77881887767885225588998625898324633088888774346655598863224999998715799951888876


Q ss_pred             --CC-------------------EEEEEECCCCHHHHH------HHHH-----HHHHHHHHHCC------------CCCC
Q ss_conf             --87-------------------468861117989999------9853-----79999976436------------7865
Q gi|254781043|r  318 --KD-------------------HIHLYLNHLDPAVLQ------ERLP-----GISESARIFAG------------VDVT  353 (611)
Q Consensus       318 --~~-------------------~v~ld~~~~~~~~l~------~~~~-----~~~~~~~~~~g------------~D~~  353 (611)
                        .+                   ...||..++..+...      ..|.     ....-++.+.|            .||.
T Consensus       391 rGeDFvv~~~L~eLVa~MN~l~g~~~Ld~a~v~r~i~aRDrev~N~~sKDaQitairgARaylgdrl~R~akph~llDPa  470 (552)
T COG3573         391 RGEDFVVADTLRELVAGMNELTGGEPLDYATVEREIEARDREVVNKYSKDAQITAIRGARAYLGDRLTRVAKPHRLLDPA  470 (552)
T ss_pred             CCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             37631406249999998630378874238999999876556552334642124667877888655454115840025866


Q ss_pred             CCE-EEEECCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             440-6752033--10012342157715853778885332276034021220---33566430476432222223215677
Q gi|254781043|r  354 RDP-IPVIPTV--HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC---ASVHGANRLGSNSLIDLVVFGRAAVI  427 (611)
Q Consensus       354 ~~~-i~v~p~~--hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~---~g~hGanrlggnsl~~~~vfG~~Ag~  427 (611)
                      .-| |-|.-.+  .-|.||+.+|.+++|++.++.    ++||||||||+|.   +|+||-|-|-|.-|..|+..||.||+
T Consensus       471 ~GPLIAVrLhiLTRKtLGGl~TdL~~rVl~A~Gq----PvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGR  546 (552)
T COG3573         471 NGPLIAVRLHILTRKTLGGLETDLDARVLGADGQ----PVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGR  546 (552)
T ss_pred             CCCEEEEEEEEEEEHHCCCCCCCHHHHHHCCCCC----CCCCHHHCCHHCCCCCCCCCCHHHHCCCEECCEEECCHHHHH
T ss_conf             6965899887653000267121345563178997----885222221012247776323133125242122422602210


Q ss_pred             HHHH
Q ss_conf             5566
Q gi|254781043|r  428 RASE  431 (611)
Q Consensus       428 ~aa~  431 (611)
                      .|+.
T Consensus       547 aaa~  550 (552)
T COG3573         547 AAAG  550 (552)
T ss_pred             HHCC
T ss_conf             3203


No 56 
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.96  E-value=3e-26  Score=190.30  Aligned_cols=353  Identities=21%  Similarity=0.241  Sum_probs=200.0

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCC-EEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             31058898996899999999998898299998689885210411653-42513789999999999989984588779999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG-IAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GG-i~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      +.+||+|||+|.||||||+.|++.|.+|+|+||++-..---.+++|| .|..+  .  ..++.++...=..++++  ...
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn--~--~~~~~~ls~~p~~~~fl--~sa   75 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTN--S--EAPDEFLSRNPGNGHFL--KSA   75 (408)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCC--C--CCHHHHHHHCCCCCHHH--HHH
T ss_conf             74218998887889999998864698799980586422136853788743326--5--05899997589820677--889


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                      ...|..  -+.|+|.+.+|+++.-.+.|..    |+             .    .|+ -..|+++|..++.+.||+++.+
T Consensus        76 l~~ft~--~d~i~~~e~~Gi~~~e~~~Gr~----Fp-------------~----sdk-A~~Iv~~ll~~~~~~gV~i~~~  131 (408)
T COG2081          76 LARFTP--EDFIDWVEGLGIALKEEDLGRM----FP-------------D----SDK-ASPIVDALLKELEALGVTIRTR  131 (408)
T ss_pred             HHHCCH--HHHHHHHHHCCCEEEECCCCEE----CC-------------C----CCC-HHHHHHHHHHHHHHCCCEEEEC
T ss_conf             872798--9999999865971577468525----57-------------8----666-6899999999999759589814


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCC--CCCC
Q ss_conf             15652000134430124689805870899506724741576565433421064014448878875136533332--2232
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME--FVQF  252 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mE--f~qf  252 (611)
                      +.+..+..+++    + ..++..+|+  .|+|+++||||||..  | +.   .++||+||.+|-..|-++....  -+.|
T Consensus       132 ~~v~~v~~~~~----~-f~l~t~~g~--~i~~d~lilAtGG~S--~-P~---lGstg~gy~iA~~~G~~I~~~rpalvpf  198 (408)
T COG2081         132 SRVSSVEKDDS----G-FRLDTSSGE--TVKCDSLILATGGKS--W-PK---LGSTGFGYPIARQFGHTITPLRPALVPF  198 (408)
T ss_pred             CEEEEEEECCC----E-EEEECCCCC--EEECCEEEEECCCCC--C-CC---CCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             64776763385----5-899859998--898048999228867--7-87---8998402689997598405686655772


Q ss_pred             CCCCCCCCE--EECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEH-HHHH---HHHHHCCCCCCCCCEEEEEEC
Q ss_conf             888442201--4304566557808983268612554076510047520111-5688---998817888888874688611
Q gi|254781043|r  253 HPTGIYGAG--CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVS-RCMM---MEIREGRGVGKSKDHIHLYLN  326 (611)
Q Consensus       253 hPt~~~~~~--~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s-~ai~---~ei~~g~g~~~~~~~v~ld~~  326 (611)
                         .+..+-  .|-..+++..-..+.+.+|-.|=.+      -|.++.-+| -+++   .-++. .. ..++..+.+|+.
T Consensus       199 ---t~~~~~~~~l~gls~~~v~~~v~~~~g~~~~g~------~LfTh~GiSGPavl~~Ss~~~~-~~-~~~~~~i~iDll  267 (408)
T COG2081         199 ---TLDESFLERLAGLSLKSVPLSVTAGKGITFQGD------LLFTHRGLSGPAVLQLSSYWRL-LE-KKGGATLSIDLL  267 (408)
T ss_pred             ---CCCHHHHHHHCCCCCCCEEEEEECCCCCEEECC------EEEEECCCCHHHHHHHHHHHHH-HC-CCCCCEEEEECC
T ss_conf             ---478789987437865653789844888133045------6798057767999999999987-41-289826999648


Q ss_pred             C-CCHHHHHHHH-----------------H-HHHHHHHHHCCCCCCC-------------------CEEEEECCC-----
Q ss_conf             1-7989999985-----------------3-7999997643678654-------------------406752033-----
Q gi|254781043|r  327 H-LDPAVLQERL-----------------P-GISESARIFAGVDVTR-------------------DPIPVIPTV-----  363 (611)
Q Consensus       327 ~-~~~~~l~~~~-----------------~-~~~~~~~~~~g~D~~~-------------------~~i~v~p~~-----  363 (611)
                      . ++.+.+...+                 | .+.+......|| +.+                   =++++..+.     
T Consensus       268 P~~~~~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A  346 (408)
T COG2081         268 PDVDAEELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREA  346 (408)
T ss_pred             CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCCHHHHHHHHHHHHCCEEECCCCCCCCEE
T ss_conf             9999999999997658556899999877326799999985357-874256559888999999975474433687654415


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             100123421577158537788853-3227603402122033566430476432222223215677556654
Q gi|254781043|r  364 HYNMGGIPTNYWGEVLDANSKNPE-RFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI  433 (611)
Q Consensus       364 hy~~GGi~vd~~g~v~~~~~~~~~-t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~  433 (611)
                      .-|.|||.+++    +  +.++++ ..+||||-|||+-  -++|-  +||.-+..|++.|+.||+.++++.
T Consensus       347 ~VT~GGV~~~e----i--d~kTmesk~vPGLyf~GEvl--Dv~g~--tGGYN~q~A~asG~~Ag~~~~~~~  407 (408)
T COG2081         347 EVTAGGVDTKE----I--DSKTMESKKVPGLYFAGEVL--DVTGW--TGGYNFQWAWASGWAAGQGAAAWL  407 (408)
T ss_pred             EEECCCEEHHH----C--CHHHHHHHCCCCCEEEEEEE--EECCC--CCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             77448331111----4--87777764089838877888--84057--774799999999999998656630


No 57 
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.69  E-value=2.1e-15  Score=119.29  Aligned_cols=113  Identities=31%  Similarity=0.401  Sum_probs=78.3

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      .|||||||+|.||++|||-|+++|++++|+++..   |+-..              ++        .    .      + 
T Consensus       212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~---GGqv~--------------~t--------~----~------I-  255 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI---GGQVK--------------DT--------V----G------I-  255 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCCE--------------EC--------C----C------E-
T ss_conf             8888998967899999999997799769992487---75313--------------03--------4----6------0-


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                                   |                 .++|.          +      .-+|.++...|.+++++.|++++....
T Consensus       256 -------------e-----------------NypG~----------~------~i~G~eL~~~~~~qa~~~gv~~~~~~~  289 (515)
T TIGR03140       256 -------------E-----------------NLISV----------P------YTTGSQLAANLEEHIKQYPIDLMENQR  289 (515)
T ss_pred             -------------E-----------------ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEECCE
T ss_conf             -------------0-----------------44898----------7------775799999999999974968991336


Q ss_pred             EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             652000134430124689805870899506724741576565
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +..+-.+ ++ ..   .....+|+  .|+||+||||||.-.+
T Consensus       290 v~~i~~~-~~-~~---~v~~~~g~--~~~aktVIiATGa~~r  324 (515)
T TIGR03140       290 AKKIETE-DG-LI---VVTLESGE--VLKAKSVIVATGARWR  324 (515)
T ss_pred             EEEEECC-CC-CE---EEEECCCC--EEEECEEEECCCCCCC
T ss_conf             9999727-98-18---99987998--9993979995698735


No 58 
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.67  E-value=1.9e-15  Score=119.68  Aligned_cols=115  Identities=23%  Similarity=0.348  Sum_probs=77.5

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |++-|||||||+|.||++|||-|++.|++|+||||..++ |.       +.. .                          
T Consensus         1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~G-Gq-------i~~-t--------------------------   45 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG-GQ-------ITI-T--------------------------   45 (555)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CC-------CEE-C--------------------------
T ss_conf             984472999995688999999999789967999668868-65-------563-6--------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                                                  ..+.  .++|.          +      .-+|.+++..+.+++.+.|+++..
T Consensus        46 ----------------------------~~Ve--NYPG~----------~------~isG~eL~~~m~~qA~~~Gve~~~   79 (555)
T TIGR03143        46 ----------------------------SEVV--NYPGI----------L------NTTGPELMQEMRQQAQDFGVKFLQ   79 (555)
T ss_pred             ----------------------------CCEE--ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             ----------------------------8568--78887----------7------986899999999999977969996


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             315652000134430124689805870899506724741576565
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      . .++.+-.++  .+.-+   ...+|   .|+||+||||||.-.+
T Consensus        80 ~-~V~~i~~~g--~~k~V---~t~~g---~~~ak~VIIATGa~pr  115 (555)
T TIGR03143        80 A-EVLDVDFDG--DIKTI---KTARG---DYKTLAVLIATGASPR  115 (555)
T ss_pred             E-EEEEEECCC--CCEEE---EECCC---EEEECEEEECCCCCCC
T ss_conf             5-699997379--95899---98897---8996979999999714


No 59 
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.66  E-value=3e-15  Score=118.35  Aligned_cols=192  Identities=17%  Similarity=0.151  Sum_probs=110.4

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC--CCHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887--7999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWL--GDVD   93 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l--~d~~   93 (611)
                      .||||||||+|+.|+..|..|+..|++|+||||..+..|.|...++-|-.-+-+...|. +. ..+.++....+  .-+.
T Consensus         4 ~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~GTSs~ss~LiHgG~RY~~~d~-~~-are~l~e~~~l~~~Aph   81 (545)
T PRK11101          4 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDA-ES-ARECISENQILKRIARH   81 (545)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCH-HH-HHHHHHHHHHHHHHCHH
T ss_conf             61768999986899999999986799399998997616200120127122523123370-99-99999989999985916


Q ss_pred             HHHH-------HHHHH----HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCC--CCHHHHHHH
Q ss_conf             9999-------99988----9999999986998132799855100146411456787656407986665--426678999
Q gi|254781043|r   94 AIQY-------LAMEA----PQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADR--TGHAILHTL  160 (611)
Q Consensus        94 lv~~-------~~~~a----~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~--tG~~i~~~L  160 (611)
                      +++.       +-+..    ...+......|++...- +....++.++.-.      ......++..|.  ....++-++
T Consensus        82 lv~~~g~L~v~~~~~~~~~~~~~~~~~~~~gv~~~~i-~~~e~~~~eP~l~------~~l~ga~~~~Dg~vdp~rL~ia~  154 (545)
T PRK11101         82 CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAI-DPQQALILEPAVN------PALIGAVKVPDGTVDPFRLTAAN  154 (545)
T ss_pred             HCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE-CHHHHHHHCCCCC------HHCEEEEEECCEEECHHHHHHHH
T ss_conf             4030686389715022678999999999769984776-8999997586888------30207999552278738999999


Q ss_pred             HHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  161 YGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       161 ~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+.+.+.|++++.++.|++|+.+ +|+|.|+.++|..+|+-+.|+||.||-|||=++
T Consensus       155 a~~A~~~GA~i~~~t~V~~i~~~-~g~v~gv~~~d~~tg~~~~i~ak~VINAAG~wa  210 (545)
T PRK11101        155 MLDAKEHGARILTAHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  210 (545)
T ss_pred             HHHHHHCCCCEECCCEEEEEEEE-CCEEEEEEEEECCCCCEEEEEEEEEEECCCCCH
T ss_conf             99999748202026477899941-887999999986789689998569997667546


No 60 
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.66  E-value=1.1e-15  Score=121.11  Aligned_cols=162  Identities=25%  Similarity=0.308  Sum_probs=94.3

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      .|.+|||||||+|.||++||+.++++|++|+||||+...+++-.+  |++   +   .+...+..+.|..       ++.
T Consensus         2 ~~~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~k~~s--G~~---l---~~~~l~~liP~~~-------~~a   66 (428)
T PRK10157          2 SEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT--GGR---L---YAHSLEHIIPGFA-------DSA   66 (428)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCE---E---CCCHHHHHCCCCH-------HCC
T ss_conf             887577899996889999999998789909999678889987611--754---0---5206888687841-------029


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                      .++.          +..+-.+.| .++++.+.. +|...  ...  .+ +...|.-.+  ..+-+.|.+++++.|++++.
T Consensus        67 P~er----------~V~~~~~~~-l~~~~~~~~-~~~~~--~~~--~~-~~~~y~V~R--~~FD~wLa~~Ae~aGA~i~~  127 (428)
T PRK10157         67 PVER----------LITHEKLAF-MTEKSAMTM-DYCNG--DET--SP-SQRSYSVLR--SKFDAWLMEQAEEAGAQLIT  127 (428)
T ss_pred             CCCE----------EEEEEEEEE-ECCCCCEEC-CCCCC--CCC--CC-CCCCEEEEH--HHHHHHHHHHHHHCCCEEEC
T ss_conf             8624----------789868999-868984556-77787--756--68-876189899--99999999999980988986


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf             3156520001344301246898058708995067247415765
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~  216 (611)
                      ++.+++|+.+ +|+|+|+.+    +|+  .|+||.||+|-|=-
T Consensus       128 g~~V~~li~~-~GrVvGV~~----~G~--~i~A~vVI~AdGv~  163 (428)
T PRK10157        128 GIRVDNLVQR-DGKVVGVEA----DGD--VIEAKTVILADGVN  163 (428)
T ss_pred             CCEEEEEEEE-CCEEEEEEC----CCC--EEEEEEEEEECCCH
T ss_conf             8581001434-897999975----895--89871799944721


No 61 
>PRK06370 mercuric reductase; Validated
Probab=99.61  E-value=6e-15  Score=116.34  Aligned_cols=37  Identities=38%  Similarity=0.495  Sum_probs=34.4

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             2310588989968999999999988982999986898
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      .++|||+|||+|.||+.||+.|++.|++|+||||..+
T Consensus         2 ~~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~~   38 (459)
T PRK06370          2 AQRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGLL   38 (459)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             8717589999888999999999968991999968997


No 62 
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.61  E-value=3.3e-13  Score=105.00  Aligned_cols=99  Identities=26%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCC----CCHHHHHHHHHHH---CCC
Q ss_conf             310588989968999999999988982999986898852104116534251378999----9999999989984---588
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP----DSWQWHLYDTIKG---SDW   88 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~----Ds~~~~~~Dt~~~---g~~   88 (611)
                      ++|||||||+|+|||+|||+++|+|++|+||+|+.   |..-.++|-|.. ++..++    .+|..-+......   -.|
T Consensus         1 mk~DvlVIGgGLAGl~aAl~~a~~G~~v~lvs~Gq---gaL~fsSGsiDl-Lg~~P~g~~v~~P~~a~~~L~~~~p~HPY   76 (425)
T PRK05329          1 MKFDVVVIGGGLAGLTCALALAEAGKRCAIVAKGQ---SALHFSSGSLDL-LGYLPDGQPVSDPFEALESLAQQAPEHPY   76 (425)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---CEEEEECCCHHH-CCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             98778999952999999999997799389992784---320021444222-13388998677989999987740768990


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             -779999999999889999999986998132799
Q gi|254781043|r   89 -LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEA  121 (611)
Q Consensus        89 -l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~  121 (611)
                       +.-.+.|+   +.....-..|++.|+++.-+.+
T Consensus        77 ~~vG~~~v~---~~~~~~~~ll~~~gl~l~g~~~  107 (425)
T PRK05329         77 SKLGPDAVL---ELLQQFQALLEAAGLPLVGSVE  107 (425)
T ss_pred             HHHCHHHHH---HHHHHHHHHHHHCCCCCCCCCC
T ss_conf             330789999---9999999999971986437876


No 63 
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.61  E-value=3.6e-13  Score=104.75  Aligned_cols=96  Identities=22%  Similarity=0.228  Sum_probs=55.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC----CCCHHHHHHHHHHHC---CC-C
Q ss_conf             058898996899999999998898299998689885210411653425137899----999999999899845---88-7
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT----PDSWQWHLYDTIKGS---DW-L   89 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~----~Ds~~~~~~Dt~~~g---~~-l   89 (611)
                      |||||||+|+|||+|||+++|+|++|.||+|+.   |.--.++|-|.. ++..+    -++|..-+.......   .| +
T Consensus         1 fDviVIGgGLAGl~aai~~a~~G~~~~lvs~Gq---saL~fsSGsiDl-Lg~~P~g~~v~~P~~ai~~L~~~~p~HPY~~   76 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ---SALHFSSGSLDL-LSRLPDGQAVEQPMDALEALAQQAPEHPYSK   76 (419)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---CCCCCCCCCHHH-HCCCCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             978999961999999999997799589993783---302123535765-0359998977798999999885376989003


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             7999999999988999999998699813279
Q gi|254781043|r   90 GDVDAIQYLAMEAPQSVYELEHYGVPFSRNE  120 (611)
Q Consensus        90 ~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~  120 (611)
                      .-.+.|+   +.....-+.|++.|+++.-+.
T Consensus        77 iG~~~V~---~~~~~~~~ll~~~gl~l~g~~  104 (419)
T TIGR03378        77 LGKTKVL---ALLQWFERLLKAQGLPLVGQS  104 (419)
T ss_pred             HCHHHHH---HHHHHHHHHHHHCCCCCCCCC
T ss_conf             1789999---999999999997498644787


No 64 
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.60  E-value=6e-14  Score=109.80  Aligned_cols=191  Identities=16%  Similarity=0.139  Sum_probs=103.7

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH----HCCCCEEEECCCCCCCCHHHHHHH-------
Q ss_conf             332310588989968999999999988982999986898852104----116534251378999999999998-------
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV----AAQGGIAASLANMTPDSWQWHLYD-------   81 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~----~A~GGi~a~~~~~~~Ds~~~~~~D-------   81 (611)
                      .|.++|||||||||+-|+.+|..|+-+|++|+||||.....|.|.    +..||+-- +.+.  | +. .+.+       
T Consensus         2 ~~~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsrSskLiHGGlRY-Le~~--~-~~-lV~Esl~ER~~   76 (503)
T PRK12266          2 TMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSASTKLIHGGLRY-LEHY--E-FR-LVREALAEREV   76 (503)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECHHH-HHCC--C-HH-HHHHHHHHHHH
T ss_conf             867747989999778899999999867996999936875683347754475115777-7328--4-89-99999999999


Q ss_pred             HHHHCCCCCCHHHH----------HHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEE-EEC
Q ss_conf             99845887799999----------9999988999999998-69981327998551001464114567876564079-866
Q gi|254781043|r   82 TIKGSDWLGDVDAI----------QYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTC-AAA  149 (611)
Q Consensus        82 t~~~g~~l~d~~lv----------~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~-~~~  149 (611)
                      .++....++.|--.          ..++.-+-..+++|-. ..+|-.+    .+....+..... ..  ......+ |..
T Consensus        77 L~~~APhlv~pl~f~~P~~~~~~p~~~~~~Gl~lYD~la~~~~~~~~~----~l~~~~~~~~~p-L~--~~l~~~~~Y~D  149 (503)
T PRK12266         77 LLRMAPHIIWPMRFVLPHRPHLRPAWMIRLGLFLYDHLGKRKSLPGSR----GLDLRRFPAGSP-LK--PEITRGFEYSD  149 (503)
T ss_pred             HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE----EEEHHHCCCCCC-CC--HHCCEEEEEEE
T ss_conf             998588656322257745777640799987899998753756678511----321654113376-55--42366899963


Q ss_pred             CC-CCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             65-426678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  150 DR-TGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       150 d~-tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .. .-.-++-.+...+.+.|..+++.+.++++..+ +| +.++.+.|..+|+.+.|+||.||-|||-+.
T Consensus       150 ~q~dDaRL~l~~~~~A~~~GA~v~ny~~v~~~~~~-~~-~~~v~~~D~~tg~~~~v~ak~VVNAtGpW~  216 (503)
T PRK12266        150 CWVDDARLVVLNARDAAERGAEILTRTRVVSARRE-GG-LWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (503)
T ss_pred             EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEC-CC-EEEEEEEECCCCCEEEEEECEEEECCCCCH
T ss_conf             37581899999999998668766024237889972-98-899999986899789999277998767107


No 65 
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=99.60  E-value=1.1e-13  Score=108.07  Aligned_cols=182  Identities=19%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHH-------HHHHHHHHCCCC--
Q ss_conf             58898996899999999998898299998689885210411653425137899999999-------999899845887--
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW-------HLYDTIKGSDWL--   89 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~-------~~~Dt~~~g~~l--   89 (611)
                      ||+|||+|++|+++|+.++++|.+|+||||..+..+.|..++|.+..............       .+.+..+....-  
T Consensus         1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~gaS~~~~g~i~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~   80 (309)
T pfam01266         1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARLALESRDLWRELIEELGIDCD   80 (309)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999927999999999997899599994999887504240261645757786189999989999999999875598756


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEE-CC--CCCHHH
Q ss_conf             ----------79999999999889999999986998132799855100146411456787656407986-66--542667
Q gi|254781043|r   90 ----------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA-AD--RTGHAI  156 (611)
Q Consensus        90 ----------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~-~d--~tG~~i  156 (611)
                                .+++..    +...+.++.+.++|+++..-+.-.+.. .++.-.      ..+....+. .+  -....+
T Consensus        81 ~~~~g~l~~~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~------~~~~~a~~~~~~~~i~p~~~  149 (309)
T pfam01266        81 FRRTGVLVLARDEAEL----DALRRLAAALRALGLPVELLDAEELRE-LEPGLS------PGIRGGLFYPDGGHVDPARL  149 (309)
T ss_pred             EEECCEEEEECCHHHH----HHHHHHHHHHHHCCCCEEEECHHHHHH-HCCCCC------CCCEEEEEECCCCEECCHHH
T ss_conf             4764689994698999----999999999997399659946888776-466567------76148999757837751243


Q ss_pred             HHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             899999987312303113156520001344301246898058708995067247415765654
Q gi|254781043|r  157 LHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       157 ~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      +..|.+.+++.|++++.++.++++..++ +++. +   ...+|+   |+|+.||+|||.++.-
T Consensus       150 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~-v---~t~~g~---i~a~~VV~a~G~~s~~  204 (309)
T pfam01266       150 LRALARAAEALGVEILEGTEVTGLEREG-GGVT-V---ETADGE---IRADKVVNAAGAWSDE  204 (309)
T ss_pred             HHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEE-E---EECCCE---ECCCEEEECCCHHHHH
T ss_conf             6799999987796999176899999989-9999-9---989970---8589999977742688


No 66 
>PRK10015 hypothetical protein; Provisional
Probab=99.60  E-value=7.7e-15  Score=115.64  Aligned_cols=163  Identities=23%  Similarity=0.275  Sum_probs=93.1

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      .|.+|||||||+|.||++||+.++++|++|+||||+...+++-..  ||+   +   .+...+..+.|      +.. +.
T Consensus         2 ~~e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~s--Ggv---l---~~~~le~liP~------~~~-~a   66 (429)
T PRK10015          2 SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMT--GGR---L---YAHTLEAIIPG------FAA-SA   66 (429)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC--CCE---E---CHHHHHHHCCC------CCC-CC
T ss_conf             976158899996889999999998779919999678879985512--637---4---16278886889------644-79


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                      .++..+.          +-.+-| .++++.+.. +|........     +...|.--+  ..+-+.|.+++.+.|++++.
T Consensus        67 P~er~V~----------~~~~~~-l~~~~~~~i-~~~~~~~~~~-----~~~~y~v~R--~~fD~WLa~~Ae~aGa~i~~  127 (429)
T PRK10015         67 PVERKVT----------REKISF-LTEESAVTL-DFHREQPDVP-----QHASYTVLR--NRLDPWLMEQAEQAGAQFIP  127 (429)
T ss_pred             CCCEEEE----------EEEEEE-ECCCCCEEC-CCCCCCCCCC-----CCCCEEEEH--HHHHHHHHHHHHHCCCEEEC
T ss_conf             8521589----------878999-878980666-7656786766-----778659899--99999999999975999977


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             31565200013443012468980587089950672474157656
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+.+.+|+.+ +|+|+|+.+     |+ ..++|+.||+|-|=-+
T Consensus       128 g~~v~~l~~e-~g~V~GV~t-----g~-~~l~A~vVI~AdGvns  164 (429)
T PRK10015        128 GVRVDALVRE-GNKVTGVQA-----GD-DILEANVVILADGVNS  164 (429)
T ss_pred             CCEEEEEEEE-CCEEEEEEC-----CC-CEEEEEEEEEECCCCH
T ss_conf             9589999962-998999987-----98-2688658998156227


No 67 
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.59  E-value=9.9e-14  Score=108.39  Aligned_cols=150  Identities=18%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      |||+|||+|.||+.||+.|++.|++|+||||..+  |+++.-.|                            |-|...-.
T Consensus         2 ~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~~--GGtC~n~G----------------------------CiPsK~Li   51 (467)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGV--GGAAVLTD----------------------------CVPSKTLI   51 (467)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--CCEEECCC----------------------------HHHHHHHH
T ss_conf             8199987488999999999978795999967997--84676778----------------------------36679999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf             99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA  177 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~  177 (611)
                      ..-+....+.....+|+.+.... -.+...    ..        ..|.-    ..-......+..++.+.||+++..+--
T Consensus        52 ~~a~~~~~~~~~~~~G~~~~~~~-~~~d~~----~~--------~~r~~----~~~~~~~~~~~~~l~~~gv~~i~G~a~  114 (467)
T PRK07845         52 ASAEVRTELRRAADLGVRFDLED-AKVDLP----QV--------NARVK----RLARAQSADIRAQLERAGVRVIAGRGR  114 (467)
T ss_pred             HHHHHHHHHHHHHHCCEECCCCC-CCCCHH----HH--------HHHHH----HHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             99999999976352580447875-550699----99--------99999----999986666999987579689973899


Q ss_pred             E-EEE-ECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             5-200-0134430124689805870899506724741576565
Q gi|254781043|r  178 L-DLI-INSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       178 ~-~Li-~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      + +-- .....+|    .....+|.-..|.|+.+|||||.-.+
T Consensus       115 f~d~~~~~~~~~V----~v~~~~g~~~~i~a~~iIIATGs~P~  153 (467)
T PRK07845        115 LDDDTPGLGPHRV----KVTTADGTEEELEADVVLIATGASPR  153 (467)
T ss_pred             EECCCCCCCCCEE----EEEECCCCEEEEEECEEEECCCCCCC
T ss_conf             9206656778779----99935897589992969995899877


No 68 
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.58  E-value=9.3e-14  Score=108.56  Aligned_cols=192  Identities=16%  Similarity=0.121  Sum_probs=104.9

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH----HCCCCEEEECCCCCCCCH-HHHHH-H-HHHHCCC
Q ss_conf             310588989968999999999988982999986898852104----116534251378999999-99999-8-9984588
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV----AAQGGIAASLANMTPDSW-QWHLY-D-TIKGSDW   88 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~----~A~GGi~a~~~~~~~Ds~-~~~~~-D-t~~~g~~   88 (611)
                      ++|||||||||+.|..+|..|+-+|++|+||||.....|.|.    +-.||+.- +.+.+...+ +...+ . .++...+
T Consensus         5 e~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsrSskLiHGGlRY-Le~~~~~lV~e~l~ER~~l~~~APh   83 (503)
T PRK13369          5 EDYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRY-LEYYEFRLVREALIEREVLLAAAPH   83 (503)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH-HHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             837889999678889999999968994999826875584447642265341665-4206699999999999999984834


Q ss_pred             CCCHHH----------HHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECC--CCCHH
Q ss_conf             779999----------99999988999999998-699813279985510014641145678765640798666--54266
Q gi|254781043|r   89 LGDVDA----------IQYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAAD--RTGHA  155 (611)
Q Consensus        89 l~d~~l----------v~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d--~tG~~  155 (611)
                      ++.+--          ...+..-+-..+++|-. -+++-.+.-+-......++  ..     ......+...|  -...-
T Consensus        84 lv~pl~~l~P~~~~~~~~~~~~~Gl~lYd~la~~~~~~~~~~~~~~~~~~~~p--l~-----~~l~~~~~y~D~~~ddaR  156 (503)
T PRK13369         84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKKLPGTRTLDLRRDPEGAP--LK-----PPYRKGFEYSDCWVDDAR  156 (503)
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCC--CC-----HHCCEEEEEECCCCCHHH
T ss_conf             12447269996077555799997899998633866788410017656111067--40-----535569999666265799


Q ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             78999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  156 ILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       156 i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ++-.+...+.+.|..+++.+.++.+..+  |.+.++.+.|..+|+.+.|+||.||-|||-+.
T Consensus       157 l~~~~~~~A~~~GA~i~ny~~V~~~~~~--g~~~~v~~~d~~tg~~~~v~ak~VVNAtGpW~  216 (503)
T PRK13369        157 LVVLNALDAAERGATILTRTRCVSARRE--GGLWRLETRNSDTGETRTFRARALVNAAGPWV  216 (503)
T ss_pred             HHHHHHHHHHHCCCHHHHCCEEEEEEEE--CCEEEEEEEECCCCCEEEEEEEEEEECCCCCH
T ss_conf             9999999999878523307368877862--64899999987899589998538998667238


No 69 
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.57  E-value=2e-13  Score=106.39  Aligned_cols=182  Identities=18%  Similarity=0.149  Sum_probs=98.9

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             32310588989968999999999988--9829999868988521041165342513789999999999989984588779
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d   91 (611)
                      -|.++||+|||+|++||++|+.++++  |.+|+|||+..+..|.|.- .||+.....   .+ ...    ..+- .   -
T Consensus        21 ~d~~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG~GASGR-NgG~~~~~~---~~-~~~----l~~~-~---G   87 (460)
T TIGR03329        21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGR-NGGCMLTWS---TK-FFT----LKRL-F---G   87 (460)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCC---CC-HHH----HHHH-H---C
T ss_conf             99755199999439999999999974899988999489615655665-445156777---64-478----9987-5---8


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHCCCCCCCCCCCCEEEECC-----------------CCCCCCCCC--------CCCC
Q ss_conf             999999999889999999----98699813279985510014-----------------641145678--------7656
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYEL----EHYGVPFSRNEAGKIYQRPF-----------------GGHMQNYGE--------GPPV  142 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~L----e~~Gv~f~r~~~G~~~~~~~-----------------gg~~~~~~~--------g~~~  142 (611)
                      .+....+.+.+.+.++++    ++.|+..+-...|.+.....                 |.+......        +...
T Consensus        88 ~~~a~~l~~~~~~a~~~v~~~i~~~gIdcd~~~~G~l~~A~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~gs~~  167 (460)
T TIGR03329        88 EAEAARLVKASEQAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSAR  167 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHCCCH
T ss_conf             99999999999999999999888729885522078899972999999999999999975994005647989998869610


Q ss_pred             CE-EEEEC---CCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             40-79866---65426678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  143 QR-TCAAA---DRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       143 ~R-~~~~~---d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+ .++..   --.-..++..|.+.+++.|++|+++|+++++ .+  |+..  + .....|   .|+|+.||+||+||.
T Consensus       168 ~~~g~~~~~~~~~~P~kl~~gLa~~a~~~Gv~i~e~t~V~~i-~~--g~~~--~-v~T~~G---~I~A~~VV~ATnay~  237 (460)
T TIGR03329       168 HLEGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGL-EE--GQPA--V-VRTPDG---QVTADKVVLALNAWM  237 (460)
T ss_pred             HCCEEEECCCCEECHHHHHHHHHHHHHHCCCEEECCEEEEEE-EC--CCCE--E-EEECCC---EEEEEEEEEEECCCC
T ss_conf             012497068625769999999999987348807746057998-55--9954--9-992797---899706999715553


No 70 
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.57  E-value=1e-13  Score=108.35  Aligned_cols=140  Identities=30%  Similarity=0.383  Sum_probs=102.7

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      +.||+|||+|.|||+||..++++|+||+++|+....+|+.+.  ||+                         +-+.=.++
T Consensus        25 e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~Wg--GGm-------------------------lf~~iVv~   77 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWG--GGM-------------------------LFNKIVVQ   77 (257)
T ss_pred             HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--HHH-------------------------HCCHHHHC
T ss_conf             068899888827999999998689659999713468886313--000-------------------------13345400


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                          +  ++-..|+++|+++....+|.+.                       .|  ....+..|..++.+.|+++++-+.
T Consensus        78 ----~--~a~~iLde~gi~y~~~~~g~~v-----------------------~d--~~~~~s~L~~~a~~aGakifn~~~  126 (257)
T PRK04176         78 ----E--EADEILDEFGIRYKEVEDGLYV-----------------------AD--SVEAAAKLAAGAIDAGAKIFNGVS  126 (257)
T ss_pred             ----C--HHHHHHHHCCCCCEECCCCEEE-----------------------EC--HHHHHHHHHHHHHHCCCEEEECCE
T ss_conf             ----5--3799999849973335896399-----------------------50--899999999999747988982304


Q ss_pred             EEEEEECCCCCCEEEEEEEEC-------CCEEEEECCCCEEEECCC
Q ss_conf             652000134430124689805-------870899506724741576
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLE-------TGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~-------~G~~~~i~AkaVILATGG  215 (611)
                      +.|||+.+++||.|++. |..       .=.+..|.||.||-|||=
T Consensus       127 VEDli~r~~~rV~GvV~-NWt~V~~~glhvDP~~i~ak~VvdaTGH  171 (257)
T PRK04176        127 VEDVIIREDGRVAGVVI-NWTPVEMAGLHVDPLTIEAKAVVDATGH  171 (257)
T ss_pred             EEEEEEECCCCEEEEEE-CCHHHHHHCCCCCCCEECCCEEEECCCC
T ss_conf             42156612881789996-2577564035558520113689988898


No 71 
>KOG0042 consensus
Probab=99.56  E-value=3e-14  Score=111.80  Aligned_cols=191  Identities=20%  Similarity=0.234  Sum_probs=108.6

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CHHCCCCEEE---ECCCCCCCCHHHHH--------
Q ss_conf             23105889899689999999999889829999868988521----0411653425---13789999999999--------
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH----TVAAQGGIAA---SLANMTPDSWQWHL--------   79 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~----s~~A~GGi~a---~~~~~~~Ds~~~~~--------   79 (611)
                      .++|||||||||..|--||+-|+-+|++|.|||+.....|.    |-+..||+.-   ++-+.   +++.+-        
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~l---D~~qyrlV~eaL~E  141 (680)
T KOG0042          65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNL---DYEQYRLVKEALNE  141 (680)
T ss_pred             CCCCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_conf             775537998888667541212011452147774266457765540254404599999999864---89999999999998


Q ss_pred             -HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH----CCCCCCCCCCCCEEEEC------------CCCCCCCCCCCCCC
Q ss_conf             -98998458877999999999988999999998----69981327998551001------------46411456787656
Q gi|254781043|r   80 -YDTIKGSDWLGDVDAIQYLAMEAPQSVYELEH----YGVPFSRNEAGKIYQRP------------FGGHMQNYGEGPPV  142 (611)
Q Consensus        80 -~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~~~------------~gg~~~~~~~g~~~  142 (611)
                       ..+++...+||.+=.+-      -....|..-    .|+.+----.|...+++            |+ +....  ...-
T Consensus       142 R~~lle~APhLs~~lPIm------lPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fP-mL~~~--~L~G  212 (680)
T KOG0042         142 RANLLEIAPHLSQPLPIM------LPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFP-MLRKD--NLKG  212 (680)
T ss_pred             HHHHHHCCCCCCCCCCEE------EEHHHHHHHHHEEECCEEEEEECCCCCCCCCEEECHHHHHHHCC-CCCCC--CCEE
T ss_conf             887764173105786545------44366440023023103456412554355103423888998675-33535--7405


Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             407986665426678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  143 QRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       143 ~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .-.+|-|-.+-.-+.-++.=.+.++|..+.++..+..||+|.+|+|.||.+.|..+|+.+.|+||.||-|||-|.
T Consensus       213 a~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs  287 (680)
T KOG0042         213 AMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS  287 (680)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCC
T ss_conf             799951777237789999999986004554179898775278985510588874047378998789995887862


No 72 
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.55  E-value=2.3e-13  Score=105.96  Aligned_cols=182  Identities=19%  Similarity=0.234  Sum_probs=99.6

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHCCCCE-EEECCCCCCCCHH------HHHHHHHHH-C
Q ss_conf             31058898996899999999998898299998689885-2104116534-2513789999999------999989984-5
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR-SHTVAAQGGI-AASLANMTPDSWQ------WHLYDTIKG-S   86 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~-g~s~~A~GGi-~a~~~~~~~Ds~~------~~~~Dt~~~-g   86 (611)
                      |.|||+|||+|+.|+++|+.++++|.+|+||||..+.. ++|......+ ...... .++-..      ..+++.... +
T Consensus         2 ~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~~~~gss~g~~~~~r~~~~~-~~~~~~l~~~s~~~~~~l~~~~g   80 (377)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPPHQQGSSHGDTRIIRHAYGE-GPAYVPLVLRAQELWRELERETG   80 (377)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             50489999952999999999997899599992899886546676642066764567-87789999999999999998749


Q ss_pred             C-------C--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECC---CCCH
Q ss_conf             8-------8--77999999999988999999998699813279985510014641145678765640798666---5426
Q gi|254781043|r   87 D-------W--LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAAD---RTGH  154 (611)
Q Consensus        87 ~-------~--l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d---~tG~  154 (611)
                      .       +  +...+.     +.....++..+++|++...-+...+. ..|++-..     .......+..+   -...
T Consensus        81 ~~~~~~~G~l~~a~~~~-----~~~~~~~~~~~~~G~~~e~l~~~e~~-~~~P~l~~-----~~~~~g~~~p~~G~v~p~  149 (377)
T PRK11259         81 EPLFVQTGVLNLGPADS-----AFLANVARSARQHGLPHEVLDAAEIR-RRWPEFRV-----PDNYIALFEPDSGFLRPE  149 (377)
T ss_pred             CCEEEEECCEEECCCHH-----HHHHHHHHHHHHCCCCCEEECHHHHH-HHCCCCCC-----CCCEEEEEECCCCEECHH
T ss_conf             75287507489738779-----99999999999769980995899999-86776578-----987799995898267499


Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .++.+|.+.+++.|++++.++.++.+..++ ++|+ |   ...+|   .|.|+.||+|+|.++
T Consensus       150 ~~~~al~~~a~~~G~~i~~~~~V~~i~~~~-~~v~-V---~T~~G---~i~A~~VV~AaGaws  204 (377)
T PRK11259        150 LAIKAHLRLAREAGAELLFNEPVTAIEHDD-DGVT-V---TTADG---TYSAKKLVVSAGTWV  204 (377)
T ss_pred             HHHHHHHHHHHHCCCCEEECEEEEEEEECC-CEEE-E---EECCC---EEECCEEEECCCHHH
T ss_conf             999999999997499658134888678749-9899-9---80894---799797999756517


No 73 
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.54  E-value=3.3e-14  Score=111.53  Aligned_cols=39  Identities=28%  Similarity=0.490  Sum_probs=35.7

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             323105889899689999999999889829999868988
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      |..+|||+|||+|.||+.||+.|++.|++|+|+||..++
T Consensus         1 M~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~G   39 (464)
T PRK05976          1 MAKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKLG   39 (464)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             997188999997889999999999789929999789979


No 74 
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.54  E-value=7.2e-14  Score=109.31  Aligned_cols=37  Identities=38%  Similarity=0.565  Sum_probs=34.2

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             2310588989968999999999988982999986898
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      .++|||+|||+|.||+.||+.|++.|++|+|+||..+
T Consensus         2 ~~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~~   38 (462)
T PRK06416          2 AFDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKL   38 (462)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             8779989999888999999999968993999967997


No 75 
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277   This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate .    Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.54  E-value=1.5e-13  Score=107.22  Aligned_cols=52  Identities=31%  Similarity=0.450  Sum_probs=43.9

Q ss_pred             CCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCC
Q ss_conf             3441332310588989968999999999988982999986898852104116
Q gi|254781043|r    9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ   60 (611)
Q Consensus         9 ~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~   60 (611)
                      -.|..+-+-|||||||+|.|||+||++|+..|++|+|++-....+|+.....
T Consensus       168 d~Yd~~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~  219 (1026)
T TIGR01372       168 DTYDKVNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEA  219 (1026)
T ss_pred             HHHCCEEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf             3130342320478878896799999999647988999706765777556778


No 76 
>KOG2403 consensus
Probab=99.53  E-value=4.2e-14  Score=110.84  Aligned_cols=411  Identities=6%  Similarity=-0.242  Sum_probs=262.3

Q ss_pred             CCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEE------------------CCCCCCCCCHHCCCCEEE
Q ss_conf             20005344133231058898996899999999998898299998------------------689885210411653425
Q gi|254781043|r    4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT------------------KVFPTRSHTVAAQGGIAA   65 (611)
Q Consensus         4 ~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lie------------------K~~~~~g~s~~A~GGi~a   65 (611)
                      +.+..-.+..+...++|...|+|+.+.....+.....+-+.-+.                  ++...+..+.+.++++++
T Consensus        45 ~~~~~~~~~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~s  124 (642)
T KOG2403          45 SDSIYAQVDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGS  124 (642)
T ss_pred             CCCCEEEEEEECEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf             77520343000105899315333466666530673378873242566651364321244432677751455444400232


Q ss_pred             ECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCCCE
Q ss_conf             13789999999999989984588779999999999889999999986998132799855100146-41145678765640
Q gi|254781043|r   66 SLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFG-GHMQNYGEGPPVQR  144 (611)
Q Consensus        66 ~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~g-g~~~~~~~g~~~~R  144 (611)
                      .....++|.+..|+++..+.....+++.....+-+..+-.+.+..+.|.+|....+++.....+. ||+..........+
T Consensus       125 d~l~dqd~i~ym~~ea~~a~~el~~~g~~f~~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~  204 (642)
T KOG2403         125 DWLGDQDAIHYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLR  204 (642)
T ss_pred             CCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             34674324468774162347888734686565667757776541235676666666617886216660777666777740


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCC
Q ss_conf             79866654266789999998731230311315652000134430124689805870899506724741576565433421
Q gi|254781043|r  145 TCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSAT  224 (611)
Q Consensus       145 ~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t  224 (611)
                      .   ...++.......+-... ....-..-..+.++... .+++.+.+..-...|..+.+.+++-+.+++|.+..+...+
T Consensus       205 ~---~~~~f~~yfa~dll~~~-g~~~~~va~~~~d~~i~-~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~  279 (642)
T KOG2403         205 H---NTSFFVEYFALDLLMSQ-GECVGVIALNLEDGTIH-RFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGA  279 (642)
T ss_pred             C---CHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCE-EEEEEEEEEEEECCCEEEEEECCCEEECCCCCEEEEECCC
T ss_conf             1---04568999999988741-68107999996226421-1134006999841662788732470673688747754257


Q ss_pred             CCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHH
Q ss_conf             06401444887887513653333222328884422014304566557808983268612554076510047520111568
Q gi|254781043|r  225 SAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM  304 (611)
Q Consensus       225 ~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai  304 (611)
                      .-.+.+++...+--.+|+-.            +...+.....+.+..++...+..+++|+.++.+....++.++.+...+
T Consensus       280 ~l~d~efvqfhpt~i~g~Gc------------liteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~  347 (642)
T KOG2403         280 PLSDMEFVQFHPTGIYGAGC------------LITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIRE  347 (642)
T ss_pred             CCCCCCEEEEEEECCCCCCE------------EEEECCCCCCCCEEECCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf             87665303444322456562------------665304322550133365332300164301113345556555565574


Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             89988178888888746886111798999998537999997643678654406752033100123421577158537788
Q gi|254781043|r  305 MMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSK  384 (611)
Q Consensus       305 ~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~  384 (611)
                      -+++..+++-..-..+.+.-.-++++.-.....+.++..+......+|...++.+-+..++++++.++.+..++ +.+ +
T Consensus       348 grg~g~~kd~~~l~l~h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~-g~d-~  425 (642)
T KOG2403         348 GRGVGPNKDHVYLQLSHLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREV-GQD-Q  425 (642)
T ss_pred             HCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCC-C
T ss_conf             23667887865310114772442225788532056674147445665557774354476656786631662466-655-4


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8533227603402122033566430476432222223215677556654
Q gi|254781043|r  385 NPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI  433 (611)
Q Consensus       385 ~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~  433 (611)
                      .----.++++||++.+|+..|++++..-+++..+-+++.........-.
T Consensus       426 vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~  474 (642)
T KOG2403         426 VVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGD  474 (642)
T ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             5534020167777763202111134566788778887777888518889


No 77 
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=99.53  E-value=3.4e-13  Score=104.90  Aligned_cols=140  Identities=30%  Similarity=0.381  Sum_probs=100.7

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      +.||+|||+|.|||+||..++++|+||+++|+....+|+.+.  ||+.              |           ++=.++
T Consensus        17 e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~Wg--GGml--------------f-----------n~ivv~   69 (229)
T pfam01946        17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWG--GGML--------------F-----------SAMVVR   69 (229)
T ss_pred             HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCC--------------C-----------CCEEEC
T ss_conf             268899887817999999998789859999645268886202--0122--------------5-----------633764


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                      .      ++-+.|+++|+++....+|.+.                       .|  ....+..|..++.+.|+++++.+.
T Consensus        70 ~------~a~~iLde~gi~y~~~~~g~~v-----------------------~d--s~~~~s~L~s~a~~aGakifn~~~  118 (229)
T pfam01946        70 K------PADEFLDEFGIRYEDEGDYVVV-----------------------AD--AAEFTSTLASKALQPGVKIFNATS  118 (229)
T ss_pred             C------HHHHHHHHCCCCCEECCCCEEE-----------------------EC--HHHHHHHHHHHHHCCCCEEEECCE
T ss_conf             1------3899999749952764796699-----------------------44--999999999997678989982448


Q ss_pred             EEEEEECCCCCCEEEEEEE---ECCC---EEEEECCCCEEEECCC
Q ss_conf             6520001344301246898---0587---0899506724741576
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQ---LETG---EIHRFSAKLVVLATGG  215 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~---~~~G---~~~~i~AkaVILATGG  215 (611)
                      +.||++.+ +||.|++.--   ...|   .+..|.||.||-|||=
T Consensus       119 VEDli~r~-~rV~GvViNWt~V~~~g~hvDP~~i~ak~VvDaTGH  162 (229)
T pfam01946       119 VEDLIIRD-NRVAGVVTNWTLVEMAGLHMDPLTIRAKAVVDATGH  162 (229)
T ss_pred             EEEEEEEC-CCEEEEEEEEEHHHHCCCCCCCCCCCCEEEEECCCC
T ss_conf             88899967-927999984114444367558421100179866889


No 78 
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.52  E-value=2.9e-13  Score=105.37  Aligned_cols=186  Identities=21%  Similarity=0.221  Sum_probs=104.6

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ++|||+|||||+.|+..|..|+-+|++|+|+||.....|.|..+++-|-.-+-+...+.+. .+.+.++.      .   
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~-lvrEal~E------r---   80 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFS-LVREALAE------R---   80 (532)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHH-HHHHHHHH------H---
T ss_conf             5777899898654699999998679849999547656766676345755416665306547-99999999------9---


Q ss_pred             HHHHHHHHHHHHH---------------HHHCCCCCCCCCCC--------CEEEECCCCCCCCCCCCCCCCE-----EEE
Q ss_conf             9999988999999---------------99869981327998--------5510014641145678765640-----798
Q gi|254781043|r   96 QYLAMEAPQSVYE---------------LEHYGVPFSRNEAG--------KIYQRPFGGHMQNYGEGPPVQR-----TCA  147 (611)
Q Consensus        96 ~~~~~~a~~~i~~---------------Le~~Gv~f~r~~~G--------~~~~~~~gg~~~~~~~g~~~~R-----~~~  147 (611)
                      +.+-+.+|..++-               +...|+..--.-.|        +....+.+   .  ...+...+     ...
T Consensus        81 ~vL~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~---~--~~~P~l~~~~l~ga~~  155 (532)
T COG0578          81 EVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEA---L--PLEPALKKDGLKGAFR  155 (532)
T ss_pred             HHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCHHHH---H--HCCCCCCHHCCCCEEE
T ss_conf             9999758661136867586368865224788689999876251235874331165552---0--0286546200454199


Q ss_pred             ECCCC--CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             66654--266789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  148 AADRT--GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       148 ~~d~t--G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ..|..  -.-++-.+...+.+.|.++++.+.++.|+.++ | |.|+.+.|..+|+.+.|+|+.||.|||-+..
T Consensus       156 y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d  226 (532)
T COG0578         156 YPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWVD  226 (532)
T ss_pred             ECCCEECHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECC-C-EEEEEEEECCCCCEEEEECCEEEECCCCCHH
T ss_conf             706352468899999999996530123046153455408-7-7899997157882799883779989870189


No 79 
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.52  E-value=1.1e-13  Score=108.05  Aligned_cols=35  Identities=46%  Similarity=0.499  Sum_probs=33.4

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             10588989968999999999988982999986898
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      +|||+|||+|.||+.||+.|++.|++|+|+||..+
T Consensus         3 ~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~   37 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL   37 (460)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             16989999778999999999969790999958998


No 80 
>PRK06116 glutathione reductase; Validated
Probab=99.52  E-value=2.4e-14  Score=112.37  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=34.8

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             32310588989968999999999988982999986898
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      |..+|||+|||+|.||+.||+.|++.|.+|+|+||..+
T Consensus         1 Ms~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~~   38 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKEL   38 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             99748889999888999999999968796999937997


No 81 
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.51  E-value=1.9e-13  Score=106.58  Aligned_cols=39  Identities=38%  Similarity=0.630  Sum_probs=35.0

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             323105889899689999999999889829999868988
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      |..+|||+|||+|.||+.||+.|++.|++|+|||+....
T Consensus         1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~   39 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNP   39 (475)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             996188999998889999999999789919999725776


No 82 
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.51  E-value=1.9e-12  Score=99.94  Aligned_cols=197  Identities=20%  Similarity=0.260  Sum_probs=99.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCC-EEEECCC---------------CCCCC--------
Q ss_conf             58898996899999999998898299998689885210411653-4251378---------------99999--------
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG-IAASLAN---------------MTPDS--------   74 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GG-i~a~~~~---------------~~~Ds--------   74 (611)
                      ||+|||+|+.|+++|++++++|.+|+||||......+|.++.+| +++....               ..+|+        
T Consensus         3 ~V~VIGaGivGlstA~~La~~G~~VtviDr~~~~~~~aS~gNaG~ls~~~~~p~~~p~~~~~~~~~l~~~~~pl~~~~~~   82 (410)
T PRK12409          3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPRP   82 (410)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCC
T ss_conf             59998983999999999997899189996989987634830121136220456568304778888851889980417876


Q ss_pred             -H---HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEC----------------CCCC
Q ss_conf             -9---99999899845-88779999999999889999-9999869981327998551001----------------4641
Q gi|254781043|r   75 -W---QWHLYDTIKGS-DWLGDVDAIQYLAMEAPQSV-YELEHYGVPFSRNEAGKIYQRP----------------FGGH  132 (611)
Q Consensus        75 -~---~~~~~Dt~~~g-~~l~d~~lv~~~~~~a~~~i-~~Le~~Gv~f~r~~~G~~~~~~----------------~gg~  132 (611)
                       +   .+..+ .++.. .+..+......++-.+.+.+ ++.++.|+.|.....|.++.-.                ..|.
T Consensus        83 ~~~~~~w~~~-fl~~~~~~~~~~~~~~~la~~~~~~~~~l~~~~g~d~~~~~~G~L~~~~~~~~~~~~~~~~~~~~~~Gv  161 (410)
T PRK12409         83 SWHKYSWLAE-FLAHIPNYRANTIETVRLAIAAREHLFDIAEREGIDFDLERRGILHIYHDKADFDHAKRVNALLNEGGL  161 (410)
T ss_pred             CHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             8677699999-997677889889999999999999999999975987420448789998488899999999999997699


Q ss_pred             CC---------CCCC--CCCCCEEEEE-CCCCC--HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf             14---------5678--7656407986-66542--667899999987312303113156520001344301246898058
Q gi|254781043|r  133 MQ---------NYGE--GPPVQRTCAA-ADRTG--HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLET  198 (611)
Q Consensus       133 ~~---------~~~~--g~~~~R~~~~-~d~tG--~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~  198 (611)
                      ..         ....  ...+....|. .|.++  ..++.+|.+.+++.|++++.++.++++..++ +++...+.-... 
T Consensus       162 ~~~~L~~~el~~leP~L~~~~~ggi~~p~d~~~dp~~~~~al~~~~~~~G~~~~~~~~V~~i~~~~-~~v~v~~~~~~~-  239 (410)
T PRK12409        162 ERRAVTPEEMRAIEPTLTGEYYGGFYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTDIKTDG-DRVVLTCQDSSQ-  239 (410)
T ss_pred             CCEEECHHHHHHHCCCCCCEEEEEEEECCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEEEEECCCCC-
T ss_conf             819838999997566765305789981786063589999999999997799998785589999809-989999646423-


Q ss_pred             CEEEEECCCCEEEECCCCCC
Q ss_conf             70899506724741576565
Q gi|254781043|r  199 GEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       199 G~~~~i~AkaVILATGG~~~  218 (611)
                      +.-..+.|+.||+|+|-+++
T Consensus       240 ~~~~~~~ad~vViAaGawS~  259 (410)
T PRK12409        240 GDSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             CCCCEEEEEEEEECCCCCCH
T ss_conf             35525883049987666637


No 83 
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.47  E-value=2.4e-13  Score=105.84  Aligned_cols=39  Identities=41%  Similarity=0.529  Sum_probs=34.7

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             323105889899689999999999889829999868988
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      +.++|||+|||+|.||..||++|++.|++|+|+||....
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l   39 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL   39 (454)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             985154899897777999999999679977999306986


No 84 
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.46  E-value=7.6e-13  Score=102.61  Aligned_cols=38  Identities=39%  Similarity=0.573  Sum_probs=34.4

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             32310588989968999999999988982999986898
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      |-..|||+|||+|.||+.||+.|++.|++|+||||...
T Consensus         1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~~   38 (467)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKYW   38 (467)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             98568789999788999999999978990999948996


No 85 
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.44  E-value=2.6e-12  Score=99.11  Aligned_cols=189  Identities=17%  Similarity=0.211  Sum_probs=97.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHCCCCEEEEC----CC-----------CCCC---------C
Q ss_conf             88989968999999999988982999986898-8521041165342513----78-----------9999---------9
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFP-TRSHTVAAQGGIAASL----AN-----------MTPD---------S   74 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~-~~g~s~~A~GGi~a~~----~~-----------~~~D---------s   74 (611)
                      |+|||+|+.|+++|+.++++|.+|+||||... ..+.|....|.++...    ..           ..++         .
T Consensus         3 VvIIGaGi~G~stA~~La~~G~~V~vler~~~~~~~~S~~naG~i~~~~~~p~~~pg~~~~~~~~l~~~~~pl~~~~~~~   82 (416)
T PRK00711          3 VVVLGSGVVGVTSAWYLARAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDGD   82 (416)
T ss_pred             EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCC
T ss_conf             99999449999999999968996899969999853135134600164213564576427888888627898706257769


Q ss_pred             HHH--HHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCEEEE---------------------
Q ss_conf             999--9998998458---8779999999999889999999-986998132799855100---------------------
Q gi|254781043|r   75 WQW--HLYDTIKGSD---WLGDVDAIQYLAMEAPQSVYEL-EHYGVPFSRNEAGKIYQR---------------------  127 (611)
Q Consensus        75 ~~~--~~~Dt~~~g~---~l~d~~lv~~~~~~a~~~i~~L-e~~Gv~f~r~~~G~~~~~---------------------  127 (611)
                      +..  .....++...   +....+....+++.+.+.++.| ++.|..|.-...|.+..-                     
T Consensus        83 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~la~~s~~~~~~l~~~~g~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~G~  162 (416)
T PRK00711         83 PFQLRWMWQMLRNCTASRYAVNKGRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEAGV  162 (416)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             78879999999855887899999999999999899999999864997101527689996799999999999999998699


Q ss_pred             ------------CCCCCCCCCCCCCCCCEEEEE-CCCC--CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEE
Q ss_conf             ------------146411456787656407986-6654--2667899999987312303113156520001344301246
Q gi|254781043|r  128 ------------PFGGHMQNYGEGPPVQRTCAA-ADRT--GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVV  192 (611)
Q Consensus       128 ------------~~gg~~~~~~~g~~~~R~~~~-~d~t--G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav  192 (611)
                                  .+++-..   ....+.-..|. .|.+  .+.++.+|.+.+++.|++++.++.++++..++ |+|.|+.
T Consensus       163 ~~e~l~~~e~~~~~P~l~~---~~~~~~Ga~~~p~d~~~d~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~V~  238 (416)
T PRK00711        163 PYELLDRDELAAVEPALAG---VRHKLAGGLRLPNDETGDCQLFTQRLAALAEQLGVKFRFNTPVDGLLVEG-GRITGVQ  238 (416)
T ss_pred             CEEEECHHHHHHHCCCCCC---CCCCEEEEEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC-CEEEEEE
T ss_conf             7399689999874651015---55547899996898706679999999999985388620023158999849-9899885


Q ss_pred             EEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             89805870899506724741576565
Q gi|254781043|r  193 AWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       193 ~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .   ..|   .|.|+.||+|+|.+++
T Consensus       239 t---~~g---~i~ad~vV~AaGaws~  258 (416)
T PRK00711        239 T---GGG---VITADAYVVALGSYST  258 (416)
T ss_pred             C---CCC---EEEEEEEEEECCHHHH
T ss_conf             3---895---5750169993374369


No 86 
>PRK13748 putative mercuric reductase; Provisional
Probab=99.43  E-value=2e-12  Score=99.87  Aligned_cols=39  Identities=28%  Similarity=0.427  Sum_probs=35.1

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             323105889899689999999999889829999868988
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      -+..|||+|||+|.||..||+.|++.|++|+||||..++
T Consensus        95 ~~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~lG  133 (561)
T PRK13748         95 NEGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIG  133 (561)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             899876899895889999999999789979999479968


No 87 
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42  E-value=6.2e-11  Score=90.08  Aligned_cols=114  Identities=28%  Similarity=0.394  Sum_probs=72.0

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             310588989968999999999988982-9999868988521041165342513789999999999989984588779999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFK-TACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~-V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      +.|||+|||+|.|||+||+-++..+++ ++++++..+. +.           +.... |                     
T Consensus         2 ~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~g-g~-----------~~~~~-~---------------------   47 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQ-----------LTKTT-D---------------------   47 (305)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CC-----------CCCCE-E---------------------
T ss_conf             42288998958899999999987589856999478758-86-----------34433-3---------------------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                      ++                               .++|..               ++-.|..++..+.+++.+.++++.. 
T Consensus        48 ve-------------------------------nypg~~---------------~~~~g~~L~~~~~~~a~~~~~~~~~-   80 (305)
T COG0492          48 VE-------------------------------NYPGFP---------------GGILGPELMEQMKEQAEKFGVEIVE-   80 (305)
T ss_pred             EC-------------------------------CCCCCC---------------CCCCHHHHHHHHHHHHHHCCEEEEE-
T ss_conf             35-------------------------------767986---------------7775089999999777634708888-


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             15652000134430124689805870899506724741576565
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ..+..+-  .++.   ...+...+|+   +.||+||+|||-..+
T Consensus        81 ~~v~~v~--~~~~---~F~v~t~~~~---~~ak~vIiAtG~~~~  116 (305)
T COG0492          81 DEVEKVE--LEGG---PFKVKTDKGT---YEAKAVIIATGAGAR  116 (305)
T ss_pred             EEEEEEE--ECCC---EEEEEECCCE---EEEEEEEECCCCCCC
T ss_conf             9989986--0686---0999947974---986569996177656


No 88 
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.41  E-value=1.3e-13  Score=107.54  Aligned_cols=149  Identities=26%  Similarity=0.307  Sum_probs=87.2

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ++|||+|||+|.||++||+.++++|++|+|+||....+....++ +++       .+...+....+        .+.+ +
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~-~~~-------~~~~l~~l~~~--------~~~~-i   64 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG-GGL-------SPRALEELIPD--------FDEE-I   64 (396)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCC-------CHHHHHHHCCC--------CHHH-H
T ss_conf             47889998978899999999985799299996578899987676-667-------87788774555--------2133-2


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                      ...+..            ..|... ..+....     ..       . ...+.-+  -..+.+.|.+++.+.|++++..+
T Consensus        65 ~~~v~~------------~~~~~~-~~~~~~~-----~~-------~-~~~y~v~--R~~fd~~La~~A~~aGae~~~~~  116 (396)
T COG0644          65 ERKVTG------------ARIYFP-GEKVAIE-----VP-------V-GEGYIVD--RAKFDKWLAERAEEAGAELYPGT  116 (396)
T ss_pred             EEEEEE------------EEEECC-CCEEEEE-----CC-------C-CCEEEEE--HHHHHHHHHHHHHHHCCEEEECC
T ss_conf             133202------------699715-7426874-----48-------8-8579988--89988999999998398998187


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             5652000134430124689805870899506724741576
Q gi|254781043|r  176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      .+.+++.++++.++++.     .+. ..++||-||.|+|=
T Consensus       117 ~~~~~~~~~~~~~~~~~-----~~~-~e~~ak~vI~AdG~  150 (396)
T COG0644         117 RVTGVIREDDGVVVGVR-----AGD-DEVRAKVVIDADGV  150 (396)
T ss_pred             EEEEEEEECCCEEEEEE-----CCC-EEEECCEEEECCCC
T ss_conf             88999981781699995-----686-69961899988485


No 89 
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=99.41  E-value=3.3e-12  Score=98.45  Aligned_cols=140  Identities=28%  Similarity=0.381  Sum_probs=98.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      +-||+|||+|.|||+||..++++|++|+++|+....+|+.+.  ||+                         +-+.=.++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~--GGm-------------------------lf~~iVv~   82 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG--GGM-------------------------LFNKIVVR   82 (262)
T ss_pred             HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC--CCC-------------------------CCCCEEEC
T ss_conf             326799876850578999998679649999730146876334--433-------------------------35604442


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                            -++-+.|++.|+++.-.++|.+.                       .|  .......|..++.+.|+++++.+.
T Consensus        83 ------~~a~~iL~e~gI~ye~~e~g~~v-----------------------~d--s~e~~skl~~~a~~aGaki~n~~~  131 (262)
T COG1635          83 ------EEADEILDEFGIRYEEEEDGYYV-----------------------AD--SAEFASKLAARALDAGAKIFNGVS  131 (262)
T ss_pred             ------CHHHHHHHHHCCCCEECCCCEEE-----------------------EC--HHHHHHHHHHHHHHCCCEEEECCE
T ss_conf             ------53899999819852445796698-----------------------32--799999999998730810242324


Q ss_pred             EEEEEECCCCCCEEEEEEEEC----C---CEEEEECCCCEEEECCC
Q ss_conf             652000134430124689805----8---70899506724741576
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLE----T---GEIHRFSAKLVVLATGG  215 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~----~---G~~~~i~AkaVILATGG  215 (611)
                      +.|+|+.++-+|+|++. |..    .   =.+..++||.||-|||=
T Consensus       132 veDvi~r~~~rVaGvVv-NWt~V~~~~lhvDPl~i~a~~VvDaTGH  176 (262)
T COG1635         132 VEDVIVRDDPRVAGVVV-NWTPVQMAGLHVDPLTIRAKAVVDATGH  176 (262)
T ss_pred             EEEEEEECCCCEEEEEE-ECCHHHHCCCCCCCCEEEEEEEEECCCC
T ss_conf             77899816994689998-2512220565427511247899967888


No 90 
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.37  E-value=5.7e-12  Score=96.89  Aligned_cols=151  Identities=33%  Similarity=0.409  Sum_probs=82.5

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             3231058898996899999999998898299998689--88521041165342513789999999999989984588779
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF--PTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~--~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d   91 (611)
                      ++..|||||||+|.|||-||++|++.|++++|++...  +..=.|.-|-||++-  +.     ... --|.+   +|+  
T Consensus         3 ~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~K--G~-----lvr-EidaL---gG~--   69 (621)
T PRK05192          3 YPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK--GH-----LVR-EIDAL---GGE--   69 (621)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCH--HH-----HHH-HHHHC---CCH--
T ss_conf             888798899897579999999999679967999658131158604520367216--57-----666-87753---689--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHH-CC
Q ss_conf             999999999889999999986998132799855100146411456787656--407986665426678999999873-12
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALK-NN  168 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~-~g  168 (611)
                         .-..++          .-|+.|..               .+...|+.+  +|.  ..|+  ......+.+.+.. .+
T Consensus        70 ---mg~~aD----------~~~Iq~r~---------------LN~sKGpAv~~~Ra--Q~Dr--~~Y~~~~~~~l~~~~n  117 (621)
T PRK05192         70 ---MGKAAD----------KTGIQFRM---------------LNTSKGPAVRAPRA--QADR--KLYRAAMREILENQPN  117 (621)
T ss_pred             ---HHHHHH----------HHHHHHHH---------------HCCCCCCCCCCHHH--HHHH--HHHHHHHHHHHHCCCC
T ss_conf             ---999998----------87616876---------------15888830067398--8859--9999999999964999


Q ss_pred             CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf             303113156520001344301246898058708995067247415765
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~  216 (611)
                      ++++.. .|++|+++ +++|.||+.   .+|.  .|.|++|||+||=|
T Consensus       118 l~i~~~-~v~~l~~~-~~~v~GV~~---~~g~--~i~a~~vvlttGTF  158 (621)
T PRK05192        118 LTLFQG-EVEDLIVE-NDRVKGVVT---QDGL--EFRAKAVVLTTGTF  158 (621)
T ss_pred             CEEEEE-EEEEEEEE-CCEEEEEEE---CCCE--EEEEEEEEEECCCC
T ss_conf             789981-45799987-999999996---6870--99852699831564


No 91 
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.35  E-value=2.6e-12  Score=99.13  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=31.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             0588989968999999999988982999986898
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      ..|+|||+|.||+.||+.|++.|++|+||||..+
T Consensus         1 ~~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~   34 (458)
T PRK06912          1 SKLVIIGGGPAGYVAAITAAQNGKEVTLIDEADL   34 (458)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9499990088999999999978595999958997


No 92 
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.34  E-value=2.6e-11  Score=92.53  Aligned_cols=37  Identities=30%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             0588989968999999999988982999986898852
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      .+|+|||+|.|||+||+.|++.|++|+|+||.+..+|
T Consensus        18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG   54 (350)
T PRK12770         18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGG   54 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCE
T ss_conf             9899999558899999999978998599953696982


No 93 
>PRK02106 choline dehydrogenase; Validated
Probab=99.32  E-value=1.7e-10  Score=87.29  Aligned_cols=54  Identities=20%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             HHHHH-HCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC-CCEEEECCCCC
Q ss_conf             99987-31230311315652000134430124689805870899506-72474157656
Q gi|254781043|r  161 YGQAL-KNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVLATGGYG  217 (611)
Q Consensus       161 ~~~~~-~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~  217 (611)
                      .+.+. +.+++++.++.|++++.| +++++||...+  .|..+.+.| |-||||+|.++
T Consensus       203 l~~a~~r~Nl~v~~~a~V~rI~~d-~~~a~GV~~~~--~~~~~~v~a~keVILsAGai~  258 (555)
T PRK02106        203 LDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYER--GGGVETARARREVILSAGAIN  258 (555)
T ss_pred             HHHHHCCCCEEEEECCEEEEEEEC-CCEEEEEEEEE--CCEEEEEEEEEEEEECCCCCC
T ss_conf             546504897399828789887535-98578789997--998999996137997574216


No 94 
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=99.32  E-value=3.2e-13  Score=105.07  Aligned_cols=317  Identities=21%  Similarity=0.222  Sum_probs=149.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             05889899689999999999889---829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G---~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      ||++|||+|.|+..|||+|.|.|   +||++|+.++++  +|+        +|=..-| |.  ++   ++++.       
T Consensus         1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~G--GTC--------VNVGCVP-SK--~l---lraa~-------   57 (494)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPLG--GTC--------VNVGCVP-SK--IL---LRAAE-------   57 (494)
T ss_pred             CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CEE--------EEECCCH-HH--HH---HHHHH-------
T ss_conf             91899827689999999998548871599996378977--615--------8523274-58--99---99998-------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHH--HHHHHHHHHHHCC-CEE
Q ss_conf             9999998899999999869981327998551001464114567876564079866654266--7899999987312-303
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHA--ILHTLYGQALKNN-AEF  171 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~--i~~~L~~~~~~~g-v~i  171 (611)
                      +..++++++            |           .++++.....  .          .....  -++.+.+++++.. +++
T Consensus        58 ~~~~a~~~~------------~-----------f~g~~~~~~~--v----------~~~~ll~~~~~~V~eLR~eKY~~v  102 (494)
T TIGR02053        58 VAHYARKPP------------F-----------FVGLLAATVE--V----------DFEELLEQKREVVEELRKEKYEDV  102 (494)
T ss_pred             HHHHHHCCC------------C-----------CCCCCCCCCC--C----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             876763477------------7-----------7775354344--2----------389999998899999877678999


Q ss_pred             ECCCEEEEEEECCCCCCEEEE--EEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCC
Q ss_conf             113156520001344301246--898058708995067247415765654334210640144488788751365333322
Q gi|254781043|r  172 FIEYFALDLIINSEGCCVGVV--AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEF  249 (611)
Q Consensus       172 ~~~~~~~~Li~d~dG~V~Gav--~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf  249 (611)
                      +..+..+|+|. +..+-..--  =.+..+|.-..+..|.+|+|||--.+      -|+   =.|+.-+-++|--|+|-||
T Consensus       103 l~~y~~~~~~~-G~A~F~d~~~V~v~~~~GG~~~~~~k~~lIATGa~P~------~P~---IPGLke~~~~G~ylTs~~~  172 (494)
T TIGR02053       103 LSSYDGVDLVR-GRARFKDPKTVKVDLAEGGREVVGAKRFLIATGARPA------VPP---IPGLKEADKAGRYLTSEEA  172 (494)
T ss_pred             HHHCCCEEEEE-EEEEECCCCEEEEECCCCCCCHHHCCCEEEEECCCCC------CCC---CCCCCCHHHCCCEECCHHH
T ss_conf             85179867998-6799847878997278885004213866896467788------744---6780045336843213777


Q ss_pred             CCC--CC--CCCC--CCEEECCCCCC---CCC-EEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC-CCCCC--
Q ss_conf             232--88--8442--20143045665---578-089832686125540765100475201115688998817-88888--
Q gi|254781043|r  250 VQF--HP--TGIY--GAGCLITEGAR---GEG-GYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG-RGVGK--  316 (611)
Q Consensus       250 ~qf--hP--t~~~--~~~~l~~~~~r---g~G-~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g-~g~~~--  316 (611)
                      +.-  .|  ..+.  +.+.+=.|...   -.| -..+=..-+||++++.|.-+.         .+ +++.+. -|+.-  
T Consensus       173 l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~---------~V-~~~l~~eeGi~~~~  242 (494)
T TIGR02053       173 LELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISA---------AV-EEALAEEEGIEVVT  242 (494)
T ss_pred             HCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHH---------HH-HHHHCCCCCEEEEE
T ss_conf             256879970468888652899999999985776140367998644646888999---------99-99841478779980


Q ss_pred             -----------CCCEE--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-E--ECCCCCCCCCCCCCCCCEEEC
Q ss_conf             -----------88746--8861117989999985379999976436786544067-5--203310012342157715853
Q gi|254781043|r  317 -----------SKDHI--HLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIP-V--IPTVHYNMGGIPTNYWGEVLD  380 (611)
Q Consensus       317 -----------~~~~v--~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~-v--~p~~hy~~GGi~vd~~g~v~~  380 (611)
                                 .++.+  .++-.+-+.+ ++.     .+.+- .+|-.|..+++- .  ..----..|||.||       
T Consensus       243 ~~r~~~~v~~rngg~~~~~~e~~~~~~~-~eA-----d~lLV-ATGR~PN~~gL~GLe~~GVk~~~~G~I~Vd-------  308 (494)
T TIGR02053       243 SARQVKAVSVRNGGGKIVTVEKNGGKAE-VEA-----DELLV-ATGRRPNTDGLNGLEKAGVKLDERGGILVD-------  308 (494)
T ss_pred             CCEEEEEEEECCCCEEEEEEECCCCCCE-EEH-----HHHHH-HHCCCCCCCCCCCHHHCCCEECCCCCEEEC-------
T ss_conf             4403554445279818999855898745-743-----11255-527875666677423458346688547872-------


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             77888533227603402122033-5664304764322222232156775566542
Q gi|254781043|r  381 ANSKNPERFAPGLMAIGEAGCAS-VHGANRLGSNSLIDLVVFGRAAVIRASEMID  434 (611)
Q Consensus       381 ~~~~~~~t~i~GLyAaGe~a~~g-~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~  434 (611)
                         +.++|+-|+.||||||- .+ +.||--|=.-    +.--|.+|+.+|-..+.
T Consensus       309 ---e~lrTsnp~iYAAGDVt-~~rl~Garfle~v----AA~~G~vAA~NA~gg~~  355 (494)
T TIGR02053       309 ---ERLRTSNPGIYAAGDVT-GGRLQGARFLEYV----AAKEGVVAAENALGGAN  355 (494)
T ss_pred             ---CCCCCCCCCEEEEECEE-CCCCCCCHHHHHH----HHHCCCEEEECCCCCCC
T ss_conf             ---62035877724620223-7874652357778----75058045201017988


No 95 
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727   This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=99.31  E-value=5.6e-11  Score=90.38  Aligned_cols=183  Identities=18%  Similarity=0.154  Sum_probs=103.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC--CCCHHHH-------HHHHHH---HCC
Q ss_conf             8898996899999999998898299998689885210411653425137899--9999999-------998998---458
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT--PDSWQWH-------LYDTIK---GSD   87 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~--~Ds~~~~-------~~Dt~~---~g~   87 (611)
                      |+|||||+-||+-|++++++|.+|.|+++.+-.++++..+.|||-|...+..  +|..-.+       +.|...   ..-
T Consensus         1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~~t   80 (357)
T TIGR02352         1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKELT   80 (357)
T ss_pred             CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             97845318789999999974993899965860456778866433243266746767478999999997599999987317


Q ss_pred             CC--------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             87--------------7999999999988999999998699813279985510014641145678765640798666542
Q gi|254781043|r   88 WL--------------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG  153 (611)
Q Consensus        88 ~l--------------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG  153 (611)
                      ++              +++|..     +....-+|...-|+.+..-.. .-..+.++.-+.....+..+|--.|..   -
T Consensus        81 g~~~~y~~~G~l~vA~~~~d~~-----~l~~~~~~~~~~G~~~~~l~~-~~~r~~EP~L~~~~~~a~~~p~d~~v~---~  151 (357)
T TIGR02352        81 GLDTGYRQCGTLVVAFDEDDVE-----KLRQLADLQSATGMELEWLSG-RALRRLEPYLSPGIRGAVYYPDDAHVD---P  151 (357)
T ss_pred             CCCCEEECCCEEEEECCCCHHH-----HHHHHHHHHHHHCCEEEECCH-HHHHHHCCCCCCCCCEEEECCCCCCCC---C
T ss_conf             9951274052589407871168-----889999998752860465077-999984425242203345748652337---1


Q ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             66789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +.++++|.+.+.+.|+++..++.+.++-... .+++++..   .+|   .+.|..||+|+|-.++
T Consensus       152 r~l~~AL~~~~~~lGv~i~~~~~v~~~~~~~-~~~~~~~~---~~~---~~~ad~vV~A~G~wa~  209 (357)
T TIGR02352       152 RELLKALVKALEKLGVEIIEEVEVQEIEARG-EKVTAVVT---SSG---DVQADQVVLAAGAWAG  209 (357)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCEEEEECCC-CEEEEECC---CCC---CEECCEEEEECCCCHH
T ss_conf             8999999999985694798625335643267-66988528---854---2655747993573334


No 96 
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=99.31  E-value=2.6e-11  Score=92.58  Aligned_cols=147  Identities=30%  Similarity=0.338  Sum_probs=80.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             588989968999999999988982999986--898852104116534251378999999999998998458877999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK--VFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK--~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      ||+|||+|.||+-||+.|++.|++|+|+..  ..+..=.|.-+-||++    ..      ....++-.-| +        
T Consensus         1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~~ig~msCnpSiGG~g----kG------~LvrEidaLg-G--------   61 (391)
T pfam01134         1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIA----KG------HLVREIDALG-G--------   61 (391)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCC----CC------HHHHHHHHCC-C--------
T ss_conf             979999878999999999868996899973424315886565568753----04------3999998725-8--------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHH-CCCEEEC
Q ss_conf             9999889999999986998132799855100146411456787656--407986665426678999999873-1230311
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALK-NNAEFFI  173 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~  173 (611)
                             ....+-+.-|+.|....               ...|..+  +|.  ..|+  ......+.+.+.. .+++++ 
T Consensus        62 -------~m~~~aD~s~Iq~r~LN---------------~skGpAv~a~R~--q~Dr--~~y~~~~~~~l~~~~nl~i~-  114 (391)
T pfam01134        62 -------LMGKAADKTGIQFRMLN---------------TSKGPAVRALRA--QVDR--DLYSKEMTETLENHPNLTLI-  114 (391)
T ss_pred             -------HHHHHHHHHHHHHHHHC---------------CCCCCCCCCCHH--HHHH--HHHHHHHHHHHHCCCCCEEE-
T ss_conf             -------99999999754565304---------------467876668589--9879--99999999999759993999-


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             31565200013443012468980587089950672474157656
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      +-.+.+|+.+ +++|.||+.   .+|+  .|.|++||||||=|-
T Consensus       115 ~~eV~~l~~~-~~~v~GV~~---~~g~--~i~a~~vIltTGTFl  152 (391)
T pfam01134       115 QGEVTDLIPE-NGKVKGVVT---EDGE--EYKAKAVVIATGTFL  152 (391)
T ss_pred             ECCCEEEECC-CCEEEEEEE---CCCC--EEECCEEEEECCCCC
T ss_conf             5464003026-995999993---7997--851445999315644


No 97 
>PRK11728 hypothetical protein; Provisional
Probab=99.31  E-value=2e-10  Score=86.74  Aligned_cols=179  Identities=18%  Similarity=0.205  Sum_probs=95.3

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC-CCCCHHCCCCEEEECCCCCCCCHHHH--------HHHHHH
Q ss_conf             310588989968999999999988--9829999868988-52104116534251378999999999--------998998
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPT-RSHTVAAQGGIAASLANMTPDSWQWH--------LYDTIK   84 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~-~g~s~~A~GGi~a~~~~~~~Ds~~~~--------~~Dt~~   84 (611)
                      |.|||+|||+|+.|++.|.++++.  +.+|+|+||.+-. .+.|...+|-|-+-+. .+++|...-        +++..+
T Consensus         1 m~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~-y~p~slka~l~~~g~~l~~~~~~   79 (400)
T PRK11728          1 MMYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVY-YTPGSLKARFCRRGNEATKAFCD   79 (400)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             95309999967999999999995599983999968999756335324232156435-89999999999999999999999


Q ss_pred             H--------CCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCC-
Q ss_conf             4--------5887---799999999998899999999869981327998551001464114567876564079866654-
Q gi|254781043|r   85 G--------SDWL---GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRT-  152 (611)
Q Consensus        85 ~--------g~~l---~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~t-  152 (611)
                      .        |..+   .++++ .    .-....+....+|++...-+ .+-....++. .    .+   ....|+ +.| 
T Consensus        80 ~~~i~~~~~GkliVA~~~~e~-~----~L~~l~~~~~~ngv~~~~l~-~~ei~~~eP~-v----~~---~~al~~-p~tg  144 (400)
T PRK11728         80 QHGIPYEVCGKLLVATSELEL-E----RMEALYERAAANGIEVERLD-AEELREREPN-I----RG---LGAIFV-PSTG  144 (400)
T ss_pred             HCCCCCCCCCEEEEECCHHHH-H----HHHHHHHHHHHCCCCEEEEC-HHHHHHHCCC-C----CC---CCEEEC-CCCE
T ss_conf             859992116869997799999-9----99999999985698628967-9999986886-5----43---235976-8772


Q ss_pred             ---CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             ---26678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  153 ---GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       153 ---G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                         -+.++.+|.+.+++.|++++.++.++.+-..+ +.+.   + ...+|.  .|.|+.||-|+|.++
T Consensus       145 ivD~~~l~~al~~~a~~~G~~i~~~~~V~~i~~~~-~~~~---v-~t~~~~--~i~a~~vINaAGl~A  205 (400)
T PRK11728        145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGVV---V-RTSQGG--EFEARTLVNCAGLMS  205 (400)
T ss_pred             EECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEC-CEEE---E-EECCCC--EEEEEEEEECCCHHH
T ss_conf             77899999999999997898999278898999979-9999---9-988998--899718998666528


No 98 
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.31  E-value=2.8e-10  Score=85.83  Aligned_cols=178  Identities=15%  Similarity=0.194  Sum_probs=90.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHH------HHHHHHHHCCC---
Q ss_conf             058898996899999999998898299998689885210411653425137899999999------99989984588---
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW------HLYDTIKGSDW---   88 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~------~~~Dt~~~g~~---   88 (611)
                      |||+|||+|+.|+++|+.++++|++|+||||..+..+.|....|.+ ...+....+.+..      ++.+.-...+.   
T Consensus         1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~~gaS~~n~G~~-~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~   79 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQV-WPTGQAPGPAWDRARRSREIWLELAAKAGIWVR   79 (365)
T ss_pred             CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCEE-EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9299999329999999999978994999989999977457642046-015768489999999999999998873498979


Q ss_pred             ------CC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEC-CC--CCHHHHH
Q ss_conf             ------77-99999999998899999999869981327998551001464114567876564079866-65--4266789
Q gi|254781043|r   89 ------LG-DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAA-DR--TGHAILH  158 (611)
Q Consensus        89 ------l~-d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~-d~--tG~~i~~  158 (611)
                            ++ +++-...    ..+..+.+...|++...-+.-... ..++.-..     ..+.-.+|.. +.  .-..++.
T Consensus        80 ~~G~l~~a~~~~~~~~----l~~~~~~~~~~g~~~e~l~~~e~~-~~~P~l~~-----~~~~ga~~~p~~g~~~p~~~~~  149 (365)
T TIGR03364        80 ENGSLHLARTEEELAV----LEEFAATREPAEYRVELLTPAEVA-AKFPALRL-----DGLRGGLHSPDELRVEPREAIP  149 (365)
T ss_pred             ECCEEEEECCHHHHHH----HHHHHHHHHHCCCCEEEECHHHHH-HHCCCCCC-----CCCEEEEECCCCCEECHHHHHH
T ss_conf             4278999879899999----999999999769964997799999-86686667-----7536999949987899999999


Q ss_pred             HHHHH-HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             99999-8731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  159 TLYGQ-ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       159 ~L~~~-~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .|.+. +++.|++++.++.++++  + .++   +   ....|   .|.|+.||+|+|.+..
T Consensus       150 ~l~~~~a~~~Gv~~~~~t~V~~i--~-~~~---V---~T~~G---~i~a~~VVvaaG~~~~  198 (365)
T TIGR03364       150 ALAAYLAEQHGVEFHWNTAVTSV--E-TGT---V---RTSRG---DVHADQVFVCPGADFE  198 (365)
T ss_pred             HHHHHHHHHCCCEEEEEEEEEEE--E-EEE---E---EECCC---EEEEEEEEECCCCHHH
T ss_conf             99999998579289931289962--0-148---9---97892---8997669996684055


No 99 
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777    This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=99.30  E-value=1e-11  Score=95.29  Aligned_cols=202  Identities=24%  Similarity=0.216  Sum_probs=103.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      |||||||+|.||++||..|+++|++|+||||....|---...+|+|...       +.+....+-.. ..-|-|.-....
T Consensus         1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~-------~~~~~~~~~~d-~~~L~~~P~~~~   72 (343)
T TIGR02032         1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPR-------VLEELVLPGPD-EYALKDIPKELI   72 (343)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCH-------HHHHCCCCCCC-CCCCCCCCCHHH
T ss_conf             9389982774689999999956973889850450798860057766700-------13113678888-613014774345


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf             99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA  177 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~  177 (611)
                           ...+.|+.+-+.-|.  +++....++..       .-. .+...+.-+|  ..+=+-|.+++++.|++++.++.+
T Consensus        73 -----~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~-~~~~~~v~~R--~~fD~~L~~~A~~~G~~~~~~~~~  135 (343)
T TIGR02032        73 -----VNEVRTLFNGARIIS--PNGDKVEIPIE-------ELA-FTEEAYVIDR--DAFDEFLAERAQEAGAELRLGTTV  135 (343)
T ss_pred             -----HHHHHHEECCCEEEE--CCCCEEEECCH-------HHC-CCCEEEEEEC--HHHHHHHHHHHHHCCCEEEECCEE
T ss_conf             -----420011001433880--78632210222-------112-4743789852--674189999997578067526376


Q ss_pred             EEEEECCCCCCEEEEEEEECCC---EEEEECCCCEEEECCCCCCCCC-CCCC--CCE--ECCHHHHHHHHHCCCCC-CCC
Q ss_conf             5200013443012468980587---0899506724741576565433-4210--640--14448878875136533-332
Q gi|254781043|r  178 LDLIINSEGCCVGVVAWQLETG---EIHRFSAKLVVLATGGYGRAYF-SATS--AHT--CTGDGAGMVARAGLPLQ-DME  248 (611)
Q Consensus       178 ~~Li~d~dG~V~Gav~~~~~~G---~~~~i~AkaVILATGG~~~ly~-~~t~--~~~--~tGdG~~mA~~aGa~l~-~mE  248 (611)
                      ++...+ |   .+.+.  .+++   .-..+.||.||-|.|-.+.+-+ .--+  |..  ..=.=+..|+++=.++. |.+
T Consensus       136 ~~~~~~-~---~~~~~--~~~~dd~~~~~~~a~~vigADG~~S~~~~~~lg~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  209 (343)
T TIGR02032       136 LDVEIE-D---KVVVE--VRGGDDESKGEVTAKIVIGADGARSIVAKKKLGSSATLRENKEKRELGVALRAEVEMPVEEE  209 (343)
T ss_pred             EEEEEC-C---CEEEE--EECCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCC
T ss_conf             112761-8---36899--72686756604625589971688784321247877877777541202455467730676762


Q ss_pred             CC
Q ss_conf             22
Q gi|254781043|r  249 FV  250 (611)
Q Consensus       249 f~  250 (611)
                      +-
T Consensus       210 ~~  211 (343)
T TIGR02032       210 VD  211 (343)
T ss_pred             CC
T ss_conf             35


No 100
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.29  E-value=3.9e-11  Score=91.41  Aligned_cols=148  Identities=20%  Similarity=0.251  Sum_probs=78.0

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |+.+|||+|||+|.||+.||+.|++.|++|+||||....+| ++.-.|.|        |                    .
T Consensus         1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GG-tCln~GCI--------P--------------------s   51 (472)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG-VCLNVGCI--------P--------------------S   51 (472)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-EEEEECCH--------H--------------------H
T ss_conf             99778789999888999999999978996999963799765-61235803--------2--------------------2


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                      ..-..+.+..+....+...|+.+..   -.+.....    .        .|    .+..=..+...+.+.....||+++.
T Consensus        52 K~Ll~~a~~~~~~~~~~~~Gi~~~~---~~~d~~~~----~--------~~----~~~~v~~l~~~~~~~~~~~gV~~i~  112 (472)
T PRK06467         52 KALLHVAKVIEEAKALAEHGIVFGE---PKIDIDKM----R--------AR----KEKVVKQLTGGLAGMAKGRKVTVVN  112 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEECCC---CCCCHHHH----H--------HH----HHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             9999999999998676745772588---74279999----9--------99----9999999988999999877956971


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             31565200013443012468980587089950672474157656
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ..--   +++. .++    .....+|+...+.|+.+|+|||.-.
T Consensus       113 G~a~---f~~~-~~v----~v~~~~g~~~~l~a~~ivIATGs~p  148 (472)
T PRK06467        113 GLGK---FTGG-NTV----EVTGEDGKTEVIEFDNAIIAAGSRP  148 (472)
T ss_pred             CCEE---ECCC-CEE----EEECCCCCEEEEEEEEEEECCCCCC
T ss_conf             5067---5489-803----6433888648998779999469966


No 101
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.27  E-value=1.7e-10  Score=87.20  Aligned_cols=189  Identities=17%  Similarity=0.107  Sum_probs=103.6

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC-CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCC-----
Q ss_conf             3105889899689999999999889--829999868988521-04116534251378999999999998998458-----
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSH-TVAAQGGIAASLANMTPDSWQWHLYDTIKGSD-----   87 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~-s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~-----   87 (611)
                      ++|||+|||+|+-|++.|.++++..  .+|+|+||......+ |..-+|-|-+.+....+ |..   .+.-+.|.     
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~-slk---a~l~~~g~~~~~~   77 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPG-SLK---AKLCVAGNINEFA   77 (429)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCC-CHH---HHHHHHHHHHHHH
T ss_conf             832299989738989999999973889659999705765333456765344255448985-513---3999999999999


Q ss_pred             --------CCCCHHHHH----HHHHHHHHHHHHHHHCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf             --------877999999----9999889999999986998-132799855100146411456787656407986665426
Q gi|254781043|r   88 --------WLGDVDAIQ----YLAMEAPQSVYELEHYGVP-FSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGH  154 (611)
Q Consensus        88 --------~l~d~~lv~----~~~~~a~~~i~~Le~~Gv~-f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~  154 (611)
                              +..-+.++-    .-++.-....+.+...|++ +... |..-....++..... ..+.  -...-.++-...
T Consensus        78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~l-d~~~i~~~eP~l~~~-~~aa--l~~p~~giV~~~  153 (429)
T COG0579          78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEIL-DKEEIKELEPLLNEG-AVAA--LLVPSGGIVDPG  153 (429)
T ss_pred             HHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEC-CHHHHHHHCCCCCCC-CEEE--EECCCCCEECHH
T ss_conf             999849861236808999782778999999998865798614426-999998629654436-5146--875777507689


Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+...|.+.+.++|+++..++.|+++-.+.||    +...+..+|+.. |.||.||.|.|+++
T Consensus       154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg----~~~~~~~~g~~~-~~ak~Vin~AGl~A  211 (429)
T COG0579         154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDG----VFVLNTSNGEET-LEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEECCC----EEEEEECCCCEE-EEEEEEEECCCHHH
T ss_conf             99999999999769789934836478992796----599983479678-99568998974517


No 102
>PRK06185 hypothetical protein; Provisional
Probab=99.25  E-value=4e-10  Score=84.82  Aligned_cols=162  Identities=19%  Similarity=0.184  Sum_probs=89.3

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |.+++||+|||+|.|||++|+.++++|.+|+|+||.+-..-..   . |+.  +   .+.+.+     +++. -|+.   
T Consensus         3 ~~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~~~~~---R-g~~--i---~p~tl~-----iL~~-lGl~---   64 (409)
T PRK06185          3 MVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDF---R-GDT--V---HPSTLE-----LMDE-LGLL---   64 (409)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---E-EEE--E---CHHHHH-----HHHH-CCCH---
T ss_conf             8878998999918899999999997799999991899987786---1-898--7---899999-----9998-7986---


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCE-EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-C
Q ss_conf             9999999889999999986998----132799855-100146411456787656407986665426678999999873-1
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVP----FSRNEAGKI-YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-N  167 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~----f~r~~~G~~-~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~  167 (611)
                                   +.+.+.+..    +....+|.. ....|. +.     ...++-....   .-..+...|.+++.+ .
T Consensus        65 -------------~~l~~~~~~~~~~~~~~~~g~~~~~~d~~-~l-----~~~~~~~~~~---~q~~ll~~L~~~a~~~~  122 (409)
T PRK06185         65 -------------ERFLELPHSKVRTLRFDIGGRTVTLADFS-RL-----PTRYPYIAMM---PQWDFLDFLAEKASRYP  122 (409)
T ss_pred             -------------HHHHHCCCCCEEEEEEEECCEEEEEECCC-CC-----CCCCCCEEEC---CHHHHHHHHHHHHHCCC
T ss_conf             -------------89973678733479999599389974300-16-----8888842770---18999999999985189


Q ss_pred             CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             230311315652000134430124689805870899506724741576565
Q gi|254781043|r  168 NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       168 gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +++++.++.+++++.+ +++|+|+.+.. .+|+. .|+|+-||=|-|..+.
T Consensus       123 ~~~l~~~~~v~~l~~d-~~~v~gV~~~~-~dg~~-~i~adlvVGADG~~S~  170 (409)
T PRK06185        123 TFTLRMGAEVTGLIEE-GGRVAGVRYRT-PDGEL-EIRADLTVGADGRHSR  170 (409)
T ss_pred             CCEEEECCEEEEEEEE-CCCEEEEEEEC-CCCCE-EEEEEEEEECCCCCCH
T ss_conf             9599968888999995-99089999984-89858-9997299973899847


No 103
>KOG2415 consensus
Probab=99.24  E-value=3.9e-11  Score=91.42  Aligned_cols=168  Identities=23%  Similarity=0.301  Sum_probs=104.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHH------CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             1058898996899999999998------8982999986898852104116534251378999999999998998458877
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAE------KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLG   90 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e------~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~   90 (611)
                      ++||+|||+|.|||+|||++++      +.++|+|+||+...++|+..  |   |++.   +-.++..+-|....+.-++
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS--G---avie---p~aldEL~P~wke~~apl~  147 (621)
T KOG2415          76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS--G---AVIE---PGALDELLPDWKEDGAPLN  147 (621)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEC--C---EEEC---CCHHHHHCCCHHHCCCCCC
T ss_conf             405899888815678888899888760783689999612314771321--3---0506---5436665844121387445


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             99999999998899999999869981327998551001464114567876564079866654266789999998731230
Q gi|254781043|r   91 DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAE  170 (611)
Q Consensus        91 d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~  170 (611)
                      -+-.        -+.+..|         ++++.+..- ..  +.....|.-+-|        =-++++.|-+++.+.||+
T Consensus       148 t~vT--------~d~~~fL---------t~~~~i~vP-v~--~pm~NhGNYvv~--------L~~~v~wLg~kAEe~GvE  199 (621)
T KOG2415         148 TPVT--------SDKFKFL---------TGKGRISVP-VP--SPMDNHGNYVVS--------LGQLVRWLGEKAEELGVE  199 (621)
T ss_pred             CCCC--------CCCEEEE---------CCCCEEECC-CC--CCCCCCCCEEEE--------HHHHHHHHHHHHHHHCCE
T ss_conf             4222--------0304454---------367403068-77--621367867988--------899999987778861714


Q ss_pred             EECCCEEEEEEECCCCCCEEEEEEEE---CCCE-------EEEECCCCEEEECCCCCCCC
Q ss_conf             31131565200013443012468980---5870-------89950672474157656543
Q gi|254781043|r  171 FFIEYFALDLIINSEGCCVGVVAWQL---ETGE-------IHRFSAKLVVLATGGYGRAY  220 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG~V~Gav~~~~---~~G~-------~~~i~AkaVILATGG~~~ly  220 (611)
                      |+-...+.++|.++||.|.|+..-|.   .+|.       -..|.||.+|+|-|--|.|-
T Consensus       200 iyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Ls  259 (621)
T KOG2415         200 IYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLS  259 (621)
T ss_pred             ECCCCCHHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCHHH
T ss_conf             325620222367679967657604544167898500000231111305897021442458


No 104
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=99.24  E-value=8.2e-11  Score=89.30  Aligned_cols=120  Identities=23%  Similarity=0.395  Sum_probs=83.4

Q ss_pred             CCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf             00534413323105889899689999999999889--8299998689885210411653425137899999999999899
Q gi|254781043|r    6 NLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTI   83 (611)
Q Consensus         6 ~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~   83 (611)
                      +++.=-.+++.  ||+|+|+|.+||+||.=+|++|  +||+|+|+.-..+|+++--+..|+...                
T Consensus        12 ~~~~l~~~~e~--DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~V----------------   73 (283)
T TIGR00292        12 YFEDLLDYAES--DVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIV----------------   73 (283)
T ss_pred             HHHHHHHHHHC--CEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEE----------------
T ss_conf             89988755010--667987897466899999842998069998511026898664222456136----------------


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             84588779999999999889999999986998132799855100146411456787656407986665426678999999
Q gi|254781043|r   84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQ  163 (611)
Q Consensus        84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~  163 (611)
                                 ++      .++=+.|+++|.++.-..||                       ++++|  .-+.+..|.-+
T Consensus        74 -----------v~------~pA~~~L~e~gI~~~d~~dg-----------------------~~Vad--s~e~~s~l~s~  111 (283)
T TIGR00292        74 -----------VE------KPAKEILDEFGIRYEDEGDG-----------------------YVVAD--SAEFISTLASK  111 (283)
T ss_pred             -----------EE------CHHHHHHHHCCCCEEECCCC-----------------------EEEEH--HHHHHHHHHHH
T ss_conf             -----------51------40468888659813356885-----------------------48723--67689999999


Q ss_pred             HHHCC-CEEECCCEEEEEEECCC
Q ss_conf             87312-30311315652000134
Q gi|254781043|r  164 ALKNN-AEFFIEYFALDLIINSE  185 (611)
Q Consensus       164 ~~~~g-v~i~~~~~~~~Li~d~d  185 (611)
                      +.+.| +++++-+.+.|||+-+|
T Consensus       112 a~~aGn~Ki~~~~~vEDl~~R~~  134 (283)
T TIGR00292       112 ALQAGNAKIFNGVSVEDLILRDD  134 (283)
T ss_pred             HHCCCCCEEEEEEEEEEEEECCC
T ss_conf             86588731433368887787688


No 105
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.24  E-value=2e-10  Score=86.72  Aligned_cols=40  Identities=30%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             3323105889899689999999999889829999868988
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      -|+.+|||+|||+|.||..||++|++.|++|+|||+..+.
T Consensus        37 ~~~~dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~   76 (541)
T PTZ00052         37 DLTYDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPS   76 (541)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             5787799899997889999999999889909999424556


No 106
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.22  E-value=2e-10  Score=86.71  Aligned_cols=191  Identities=20%  Similarity=0.136  Sum_probs=100.0

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHH---------HHHHHHHHH
Q ss_conf             23105889899689999999999889829999868988521041165342513789999999---------999989984
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ---------WHLYDTIKG   85 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~---------~~~~Dt~~~   85 (611)
                      ++++||+|||+|++|+++|+.+++.|.+|+|+|+..+..|+|..+.+++........ ++..         .++.+.-..
T Consensus         2 ~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~   80 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPG-GELEVRPLADLSLALWRELSEE   80 (387)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             976439998986999999999997699199991798876766776777752423555-3033433799999999998875


Q ss_pred             CCC---CCCHHHHHH-------HHHHHHHHHHHHHHCCCCC---CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             588---779999999-------9998899999999869981---327998551001464114567876564079866654
Q gi|254781043|r   86 SDW---LGDVDAIQY-------LAMEAPQSVYELEHYGVPF---SRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRT  152 (611)
Q Consensus        86 g~~---l~d~~lv~~-------~~~~a~~~i~~Le~~Gv~f---~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~t  152 (611)
                      ...   +.....+..       ...........+++++...   +..+.....  +.-+.. ....+...+..   +.-.
T Consensus        81 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~l~~~-~~~~~~~~~~~---~~~~  154 (387)
T COG0665          81 LGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELE--PALGPD-FVCGGLFDPTG---GHLD  154 (387)
T ss_pred             CCCCCCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--CCCCCC-CCEEEEECCCC---CEEC
T ss_conf             37664456624299884467432566899999998602100118887876637--333776-43345984888---3457


Q ss_pred             CHHHHHHHHHHHHHCC-CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf             2667899999987312-3031131565200013443012468980587089950672474157656543
Q gi|254781043|r  153 GHAILHTLYGQALKNN-AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY  220 (611)
Q Consensus       153 G~~i~~~L~~~~~~~g-v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly  220 (611)
                      -..++..|.+.+.+.| ..+..++.++++..+ . ++.++.   ...|+   |.|..||+|||.+....
T Consensus       155 p~~~~~~l~~~~~~~G~~~~~~~~~v~~~~~~-~-~~~~v~---t~~g~---~~a~~vv~a~G~~~~~l  215 (387)
T COG0665         155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVE---TDGGT---IEADKVVLAAGAWAGEL  215 (387)
T ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCEEEEEEC-C-CEEEEE---ECCCE---EECCEEEECCCCCHHHH
T ss_conf             89999999999997399189723524677614-7-358999---58970---98198999999643555


No 107
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.22  E-value=1.3e-09  Score=81.38  Aligned_cols=63  Identities=27%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCC
Q ss_conf             266789999998731230311315652000134430124689805870899506724741576565433
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYF  221 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~  221 (611)
                      =..++..+.+.+.+.|++++.+|.+.|+.++ ++.|.++.   ...|+  .|.|+.||||.|--++-|.
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~---~~~g~--~i~~~~vvlA~Grsg~dw~  234 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVK---LTKGE--EIEADYVVLAPGRSGRDWF  234 (486)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CCCEEEEE---CCCCC--EEECCEEEECCCCCHHHHH
T ss_conf             6999999999998558289952078899815-87079999---25784--8732779990476467899


No 108
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=99.21  E-value=4.3e-10  Score=84.58  Aligned_cols=161  Identities=19%  Similarity=0.173  Sum_probs=88.1

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      +|||+|||+|++||++|+.++++|.+|+|+||.+......    .|+.  +   .+-+.+     +++. -++       
T Consensus         1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g----~g~~--l---~p~~~~-----~L~~-lGl-------   58 (349)
T pfam01494         1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLP----RAGG--L---NQRTME-----LLRQ-AGL-------   58 (349)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC----EEEE--E---CHHHHH-----HHHH-CCC-------
T ss_conf             9978999928899999999987799899992899988787----7999--8---989999-----9998-798-------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE-C-CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             9999889999999986998132799855100-1-4641145678765640798666542667899999987312303113
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQR-P-FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~-~-~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                               .+.+...+.+....   ..... . ............  ...+ .-.  -..+.+.|.+.+.+.+++++.+
T Consensus        59 ---------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~-~~~--r~~l~~~L~~~~~~~~~~i~~~  121 (349)
T pfam01494        59 ---------EDRILAEGAPHEGM---GLAFYNTSRRRADLDFLTSP--PRVT-VYP--QTELEPILREHAEARGAQVRFG  121 (349)
T ss_pred             ---------HHHHHHCCCCCCEE---EEEECCCCCCEEECCCCCCC--CCEE-EEC--HHHHHHHHHHHHHHCCCEEEEC
T ss_conf             ---------68998506875105---99983786422201455677--6268-862--9999999999998579989966


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             15652000134430124689805870899506724741576565
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +.++.+..+++ .|.. ...+..+|....|.|+-||-|-|..+.
T Consensus       122 ~~v~~~~~~~~-~v~~-~~~~~~~~~~~~i~adlvIgADG~~S~  163 (349)
T pfam01494       122 TEVLSLEQDGD-GVTA-VVRDRRDGEEYTVRAKYLVGCDGGRSP  163 (349)
T ss_pred             CEEEEEEECCC-CEEE-EEEECCCCCEEEEEEEEEECCCCCCCH
T ss_conf             17877520599-4379-998458995589997688415777648


No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258   These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=99.20  E-value=4.8e-11  Score=90.81  Aligned_cols=143  Identities=24%  Similarity=0.308  Sum_probs=75.8

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      +|||+|||||.+|..|||+||+.|+||+||||...+  +++.--|        ..| |                   .+-
T Consensus         1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lG--GtCLN~G--------CIP-t-------------------KaL   50 (481)
T TIGR01350         1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLG--GTCLNVG--------CIP-T-------------------KAL   50 (481)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC--CEEECCC--------CCC-C-------------------HHH
T ss_conf             951899877877279999998649808999803568--7487277--------675-4-------------------788


Q ss_pred             HHHHHHHHHHHH-HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH----HHHHHCCCEE
Q ss_conf             999988999999-99869981327998551001464114567876564079866654266789999----9987312303
Q gi|254781043|r   97 YLAMEAPQSVYE-LEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY----GQALKNNAEF  171 (611)
Q Consensus        97 ~~~~~a~~~i~~-Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~----~~~~~~gv~i  171 (611)
                      .-.-+-.+.+.. +++||+... + +-++....    .      ..++          ..++..|.    --+++.+|++
T Consensus        51 L~~ae~~~~~~h~a~~~Gi~~~-~-~v~~d~~~----~------~~rK----------~~VV~~L~~Gv~~LlkknKv~v  108 (481)
T TIGR01350        51 LHSAEVYDEIKHKAKDLGIEVE-N-NVSVDWEK----M------QERK----------NKVVKKLVGGVKGLLKKNKVTV  108 (481)
T ss_pred             HHHHHHHHHHHHHHHHCCEEEC-C-EEEECHHH----H------HHHH----------HHHHHHHHHHHHHHHHHCCEEE
T ss_conf             7766789999988986780336-7-12675899----9------9998----------8987542467898863068059


Q ss_pred             ECCCEEEEEEECCCCCCEEEEEEEECCCE-EEEECCCCEEEECCCCCCC
Q ss_conf             11315652000134430124689805870-8995067247415765654
Q gi|254781043|r  172 FIEYFALDLIINSEGCCVGVVAWQLETGE-IHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~-~~~i~AkaVILATGG~~~l  219 (611)
                      +..+--   +.+ +++|    ..+..+++ ...+.+|.+|||||.--+.
T Consensus       109 ~~G~a~---~~~-~~~v----~V~~~~~~~~~~~~~k~~iiATGS~P~~  149 (481)
T TIGR01350       109 IKGEAK---FLD-PNTV----SVTGENGEEEETLEAKNIIIATGSRPRE  149 (481)
T ss_pred             EEEEEE---EEC-CCEE----EEECCCCCEEEEEEEEEEEEECCCCCCC
T ss_conf             999999---985-8589----9835655311478740379933860343


No 110
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=99.20  E-value=3.8e-09  Score=78.42  Aligned_cols=184  Identities=16%  Similarity=0.106  Sum_probs=87.2

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEECCCCCCCCHHHHHH--------HHH---HH
Q ss_conf             058898996899999999998898299998689-885210411653425137899999999999--------899---84
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASLANMTPDSWQWHLY--------DTI---KG   85 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~--------Dt~---~~   85 (611)
                      -||+|||+|+||+++|.+++++|.+|+|+|+.. +..+.|.-.+|-+...+..  +|++...+.        +.+   ..
T Consensus       257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~--~~~~~sr~~~~a~~~a~~~~~~l~~  334 (660)
T PRK01747        257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSK--DDNALSRFFRAAFLFARRFYDLEAL  334 (660)
T ss_pred             CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             71899893899999999999789968999479875655666731267402578--9976899999999999999998754


Q ss_pred             CCCCCCHHH--HHHHH--HHHHHHHHHH-HHCCCC--CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             588779999--99999--9889999999-986998--1327998551001464114567876564079866654266789
Q gi|254781043|r   86 SDWLGDVDA--IQYLA--MEAPQSVYEL-EHYGVP--FSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILH  158 (611)
Q Consensus        86 g~~l~d~~l--v~~~~--~~a~~~i~~L-e~~Gv~--f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~  158 (611)
                      +... +.+.  +-.++  +...+.++.+ +..+.+  +... +..-. ....|... ...|..+|..   +.-.-..+++
T Consensus       335 ~~~~-~~~~~Gvl~la~~e~~~~r~~~~~~~~~~~~~~~~l-~~~ea-~~~~g~~~-~~~Gl~~p~~---G~v~P~~l~~  407 (660)
T PRK01747        335 GVAF-DHDWCGVLQLAWDEKSAEKIAKMLEAGLPAELARAL-SAEEA-EALAGLPV-PCGGIFYPQG---GWLCPAELCR  407 (660)
T ss_pred             CCCC-CCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHEEC-CHHHH-HHHHCCCC-CCCCEEECCC---CEECHHHHHH
T ss_conf             6864-414675699549868899999999746994330247-99999-77529987-7783782589---7756899999


Q ss_pred             HHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  159 TLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       159 ~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +|.+. ...+|+++.++.+++|..++ +...    ++..+++  .+.|+.||||+|.-..
T Consensus       408 aLl~~-a~~~i~~~~~~~V~~l~~~~-~~w~----l~~~~~~--~~~Ad~VVlA~G~~s~  459 (660)
T PRK01747        408 ALLAA-AGQGLTIHFGHEVARLERVD-DQWQ----LDFAGGV--LASAPVVVLANGHDAT  459 (660)
T ss_pred             HHHHH-CCCCEEEEECCEEEEEEECC-CEEE----EEECCCC--EEECCEEEECCCCCHH
T ss_conf             99986-47985999274478999749-8089----9968992--8614679990561011


No 111
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.20  E-value=1.4e-10  Score=87.80  Aligned_cols=39  Identities=33%  Similarity=0.465  Sum_probs=35.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             105889899689999999999889829999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~   55 (611)
                      +|||+|||+|.||+.||+.|++.|.+|+|+||.+..+|.
T Consensus         6 ~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~   44 (465)
T PRK05249          6 DYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG   44 (465)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE
T ss_conf             789899997789999999999789929999769997665


No 112
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA    [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18  E-value=2.6e-11  Score=92.59  Aligned_cols=151  Identities=31%  Similarity=0.431  Sum_probs=81.6

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             10588989968999999999988982999986898852--1041165342513789999999999989984588779999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS--HTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g--~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      +|||+|||+|-||+-||+++++.|++++|++...-.=|  .|.-|-||++-  +....      --|.+  | |+     
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~K--G~lvr------EIDAL--G-G~-----   67 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGK--GHLVR------EIDAL--G-GL-----   67 (621)
T ss_pred             CCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCC--CEEEE------EEHHC--C-CH-----
T ss_conf             785699899842047777664369807999737774465035644577355--32677------52412--4-55-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEC
Q ss_conf             999999889999999986998132799855100146411456787656407986665426678999999873-1230311
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFI  173 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~  173 (611)
                      .-       .   -.+.-|++|..               .+...|+.++-+-...|+  ......+.+.+.. .++.++.
T Consensus        68 Mg-------~---~~D~~~IQ~r~---------------LN~sKGPAVra~RaQaDk--~~Y~~~mk~~le~~~NL~l~q  120 (621)
T COG0445          68 MG-------K---AADKAGIQFRM---------------LNSSKGPAVRAPRAQADK--WLYRRAMKNELENQPNLHLLQ  120 (621)
T ss_pred             HH-------H---HHHHCCCCHHH---------------CCCCCCCHHCCHHHHHHH--HHHHHHHHHHHHCCCCCEEHH
T ss_conf             77-------7---66650786533---------------367776210450654428--999999999985499955247


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf             3156520001344301246898058708995067247415765
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~  216 (611)
                       ..+.+|+++++.+|+||+.   .+|.  .|+||+|||+||-|
T Consensus       121 -~~v~dli~e~~~~v~GV~t---~~G~--~~~a~aVVlTTGTF  157 (621)
T COG0445         121 -GEVEDLIVEEGQRVVGVVT---ADGP--EFHAKAVVLTTGTF  157 (621)
T ss_pred             -HHHHHHHHCCCCEEEEEEE---CCCC--EEECCEEEEEECCC
T ss_conf             -6667871337976899992---7878--51068799963344


No 113
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.17  E-value=5.7e-10  Score=83.79  Aligned_cols=113  Identities=14%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             588989968999999999988--982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      -|+|||+|.||++||+.+++.  +.+|+++||.+...-+.+    ++.            .+.      +..+.+++   
T Consensus         2 kvVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~~----~lp------------~~~------~~~~~~~~---   56 (443)
T PRK09564          2 KIIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGAC----GLP------------YFV------GGFFDDPN---   56 (443)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----HHH------------HHH------CCCCCCHH---
T ss_conf             69999960999999999981493999999948898777655----203------------444------05558989---


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                                                                                .+.....++..+.|++++.++.
T Consensus        57 ----------------------------------------------------------~~~~~~~~~~~~~gi~~~~~~~   78 (443)
T PRK09564         57 ----------------------------------------------------------NMIARTPEEFIKSGIDVKTEHE   78 (443)
T ss_pred             ----------------------------------------------------------HHHHHCHHHHHHCCCEEEECCE
T ss_conf             ----------------------------------------------------------9874199999987999993888


Q ss_pred             EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             652000134430124689805870899506724741576565
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ++.+-.++ ..+   ...+..+++.+......+|||||.-..
T Consensus        79 v~~id~~~-k~v---~~~~~~~~~~~~~~yD~LiiATGs~p~  116 (443)
T PRK09564         79 VVKVDFKN-KTI---TVKNLKTGSIFNDTYDKLMIATGARPI  116 (443)
T ss_pred             EEEEECCC-CEE---EEEECCCCCEEECCCCEEEEECCCCCC
T ss_conf             99997468-648---998468761661346789996167523


No 114
>PRK06126 hypothetical protein; Provisional
Probab=99.15  E-value=5.1e-09  Score=77.56  Aligned_cols=167  Identities=16%  Similarity=0.155  Sum_probs=90.4

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      .++||||||+|.+||++|+.++++|.+|+||||.+.....+.+.  +++       .-+.|. ++.     -|+.     
T Consensus         6 ~~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~rA~--~l~-------~rtlEi-l~~-----lGl~-----   65 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALELGRRGVDSILVERGDGTAFNPKAN--ATS-------ARSMEH-FRR-----LGIA-----   65 (545)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEE--EEC-------HHHHHH-HHH-----CCCH-----
T ss_conf             88998999949899999999998799999988999988788589--988-------899999-998-----7988-----


Q ss_pred             HHHHHHHHHHHHHHHHCCCC--------CCCCCCCC-EEEECCCCCC------CCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             99999889999999986998--------13279985-5100146411------456787656407986665426678999
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVP--------FSRNEAGK-IYQRPFGGHM------QNYGEGPPVQRTCAAADRTGHAILHTL  160 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~--------f~r~~~G~-~~~~~~gg~~------~~~~~g~~~~R~~~~~d~tG~~i~~~L  160 (611)
                                 +.+.+.|++        |...-.|. +....++...      .........+...+.  -.-..+...|
T Consensus        66 -----------~~l~~~g~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~Q~~lE~~L  132 (545)
T PRK06126         66 -----------DEVRSAGLPADYPTDIAYFTRLTGYELARITLPSAREAITPVGGPDGSWPSPELPHR--IPQKYVEPIL  132 (545)
T ss_pred             -----------HHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE--CCHHHHHHHH
T ss_conf             -----------999850787534663368861176688862167544334565445665566563356--2889999999


Q ss_pred             HHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             9998731-23031131565200013443012468980587089950672474157656
Q gi|254781043|r  161 YGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       161 ~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+.+.+. ++++...+.++++-.+++| |. +...+..+|+...|+|+-||=|-|+-+
T Consensus       133 ~~~~~~~~gv~v~~g~~~~~~~qd~~g-V~-~~~~~~~~g~~~~i~A~ylVGaDGarS  188 (545)
T PRK06126        133 LEHAQAQPGVTLRYGHRLTDFEQDADG-VT-ATVEDLDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             HHHHHHCCCCEEECCCEEEEEEECCCC-EE-EEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf             999974899889807789999983894-69-999989999489998779997478873


No 115
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.14  E-value=5e-09  Score=77.63  Aligned_cols=163  Identities=20%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      -+++|||+|||+|++|+++|+.+++.|.+|+||||.+.....+.    +-+..+.   +-+. ..++.+     |+. ++
T Consensus        14 ~~~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~~~----~ra~~l~---~~s~-~iL~~l-----Gl~-~~   79 (413)
T PRK07364         14 RSLDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAVAK----GQAYALS---LLSA-RIFEGI-----GVW-EK   79 (413)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC----CCEEEEC---HHHH-HHHHHC-----CCH-HH
T ss_conf             98989989999279999999999868998899917997666788----7389958---9999-999987-----996-89


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-C
Q ss_conf             9999999889999999986998132----7998551001464114567876564079866654266789999998731-2
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSR----NEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-N  168 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r----~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-g  168 (611)
                                     +...+.+|.+    +.++.. ...|..      .....+..-+...  -..+...|.+.+... +
T Consensus        80 ---------------i~~~~~~~~~i~~~~~~~~~-~~~~~~------~~~~~~~lg~~~~--~~~l~~~L~~~~~~~~~  135 (413)
T PRK07364         80 ---------------ILPHIGPFRQIQLSDADFPG-VVRFSP------EDLGTEALGYVGE--HQVLLEALQEFVQSCPN  135 (413)
T ss_pred             ---------------HHHHCCCCCEEEEEECCCCC-EEEECH------HHCCCCCCEEEHH--HHHHHHHHHHHHHHCCC
T ss_conf             ---------------88614754259998189874-675165------5438875423300--29999999999984899


Q ss_pred             CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             30311315652000134430124689805870899506724741576565
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      |+++..+.++++..+++ .| .+.. . .++....|+|+-||-|-|.-..
T Consensus       136 v~~~~~~~v~~~~~~~~-~v-~v~l-~-~~~~~~~i~a~llIgaDG~~S~  181 (413)
T PRK07364        136 ITWLCPAQVLSVEYGEH-QA-TVTL-E-IAGQLQTLQSKLVVAADGARSP  181 (413)
T ss_pred             CEEEECCEEEEEEECCC-EE-EEEE-E-CCCCEEEEEEEEEEEECCCCCH
T ss_conf             48982877999997698-36-9999-8-2991389985689993188850


No 116
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.14  E-value=2.7e-09  Score=79.40  Aligned_cols=161  Identities=18%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ++|||||||+|.+||++|+.+++.|.+|+||||.+.....+.+.  ++       .+.+.+.     ++. -|+.+ ++ 
T Consensus        11 ~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~prA~--~l-------~~rtlei-----l~~-lGl~~-~i-   73 (554)
T PRK06183         11 HDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDYPRAV--GI-------DDEALRT-----FQS-IGLVD-EV-   73 (554)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EE-------CHHHHHH-----HHH-CCCHH-HH-
T ss_conf             98888999959899999999997799999991899988888689--98-------9999999-----998-78989-99-


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCE
Q ss_conf             9999988999999998699813----27998551001464114567876564079866654266789999998731-230
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAE  170 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~  170 (611)
                                    .+.|.++.    .+.+|..... +.    .......++......   -..+.+.|.+.+.+. +++
T Consensus        74 --------------~~~~~~~~~~~~~~~~g~~~~~-~~----~~~~~~~~p~~~~~~---Q~~lE~~L~~~l~~~~g~~  131 (554)
T PRK06183         74 --------------LPHTTPNHGMRFLDAKGRCLAD-IA----PTTDEFGWPRRNAFY---QPLLEAVLREGLARFPHVR  131 (554)
T ss_pred             --------------HHCCCCCCEEEEEECCCCEEEE-EC----CCCCCCCCCEEEEEC---HHHHHHHHHHHHHHCCCCE
T ss_conf             --------------8418414318999489978997-26----876656877144610---9999999999998689989


Q ss_pred             EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             31131565200013443012468980587089950672474157656
Q gi|254781043|r  171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      +..++.++++-.++++ |. +...+..+|+...|+||-||=|-|+-+
T Consensus       132 v~~g~~v~~~~qd~~~-V~-v~~~~~~~g~~~~ira~ylVGaDGa~S  176 (554)
T PRK06183        132 VRFGHEVVALEQDDDG-VT-VTLTDADDGQRETVRARYVVGCDGANS  176 (554)
T ss_pred             EEECCEEEEEEECCCC-EE-EEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf             9938899999971884-27-999977999579999768997178870


No 117
>PRK06184 hypothetical protein; Provisional
Probab=99.14  E-value=6.4e-09  Score=76.92  Aligned_cols=162  Identities=19%  Similarity=0.190  Sum_probs=88.3

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      ++||||||+|.+||++|+.++++|.+|+||||.+.....+.+.  +++       +.+.+. ++.     -|+.+ +   
T Consensus         6 tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~--~l~-------~rt~ei-l~~-----lGl~d-~---   66 (503)
T PRK06184          6 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGK--GIQ-------PRTQEV-FDD-----LGVLD-R---   66 (503)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EEC-------HHHHHH-HHH-----CCCHH-H---
T ss_conf             5798999909999999999997799899994899988688589--878-------999999-998-----78978-9---


Q ss_pred             HHHHHHHHHHHHHHHCCCCCC----CCCCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             999988999999998699813----2799855100-14641145678765640798666542667899999987312303
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFS----RNEAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF  171 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i  171 (611)
                                  +...|.++.    ...++.+... .+. +. ......+++......   -..+...|.+++.+.++++
T Consensus        67 ------------i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~---Q~~le~~L~~~l~~~g~~v  129 (503)
T PRK06184         67 ------------VVAAGGLYPPMRIYRDDGSVVESDMMH-HL-KPTPDEPYHLPLMVP---QWRTEEILRERLAELGHRV  129 (503)
T ss_pred             ------------HHHCCCCCCCEEEEECCCEEEEEECCC-CC-CCCCCCCCCCEEEEC---HHHHHHHHHHHHHHCCCEE
T ss_conf             ------------984357675249996897056510243-34-666676535257722---7999999999998679869


Q ss_pred             ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             11315652000134430124689805870899506724741576565
Q gi|254781043|r  172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ..++.++.+-.++++ |   .+.-..++....|+|+-||=|-|+-+.
T Consensus       130 ~~g~~v~~~~q~~~~-V---~v~~~~~~~~~~i~a~ylVGaDGa~S~  172 (503)
T PRK06184        130 EFGCELVGFEQDPEG-V---TARVAGPAGEETVRARYLVGADGGRSF  172 (503)
T ss_pred             EECCEEEEEEECCCE-E---EEEEECCCCCEEEEEEEEECCCCCCHH
T ss_conf             947668899981998-9---999985997189998777415777746


No 118
>PRK09126 hypothetical protein; Provisional
Probab=99.12  E-value=8.4e-09  Score=76.15  Aligned_cols=155  Identities=23%  Similarity=0.313  Sum_probs=82.9

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      +.|||+|||+|++||.+|+.++++|.+|+|+||.+...-.+.... |-..++.                           
T Consensus         2 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~-~r~~al~---------------------------   53 (392)
T PRK09126          2 MHSDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFD-GREIALT---------------------------   53 (392)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CEEEEEC---------------------------
T ss_conf             989999999258999999999868998999908985334577888-6289868---------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCC----------CCC--CCCCCCE-EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             9999988999999998699----------813--2799855-10014641145678765640798666542667899999
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGV----------PFS--RNEAGKI-YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYG  162 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv----------~f~--r~~~G~~-~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~  162 (611)
                             +..++.|+++|+          ++.  +..+|.. ....|..      ........-+.-  .-..+...|.+
T Consensus        54 -------~~s~~~L~~lG~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~lg~~v--~~~~l~~~L~~  118 (392)
T PRK09126         54 -------HASREILQRLGAWDRIPEAEISPLRDAKVLNGRSPFALTFDA------RGTGADALGYLV--PNHLIRRAAYE  118 (392)
T ss_pred             -------HHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCEEEEECC------CCCCCCCCCEEC--CHHHHHHHHHH
T ss_conf             -------999999998789667775076741468995288750475047------556766650002--19999999999


Q ss_pred             HHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf             98731-23031131565200013443012468980587089950672474157656543
Q gi|254781043|r  163 QALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY  220 (611)
Q Consensus       163 ~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly  220 (611)
                      .+.+. +|+++..+.++++..++++ |   .+ ...+|+  .+.|+-||-|-|....+-
T Consensus       119 ~~~~~~~v~~~~~~~v~~~~~~~~~-v---~v-~~~~g~--~i~a~llVgADG~~S~vR  170 (392)
T PRK09126        119 AVSQQPGIEILTGHRVKAVTHSDDG-A---QV-TLANGR--RLTARLLVAADSRFSATR  170 (392)
T ss_pred             HHHHCCCCEEECCCEEEEEEECCCE-E---EE-EECCCC--EEEEEEEEEECCCCCHHH
T ss_conf             9985899699869888999975980-5---99-985898--888779998068886111


No 119
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.11  E-value=3.4e-09  Score=78.68  Aligned_cols=155  Identities=23%  Similarity=0.258  Sum_probs=85.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             1058898996899999999998898299998689-885210411653425137899999999999899845887799999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      .+||+|||+|++||++|+.++++|.+|+|+||.+ ......  .  ++  ++                       .+..+
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~--r--~~--~l-----------------------~~~~~   52 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG--R--GI--AL-----------------------SPNAL   52 (387)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--E--EE--EE-----------------------CHHHH
T ss_conf             85499999789999999999828996899907761135575--5--99--98-----------------------98999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC-CE
Q ss_conf             9999988999999998699813----279985510014641145678765640798666542667899999987312-30
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN-AE  170 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g-v~  170 (611)
                      +.|-+-...  +.++..+++..    .+.++. ....|......   +......+.     =..+...|.+++.+.+ |+
T Consensus        53 ~~L~~lG~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~-----~~~l~~~L~~~~~~~~~v~  121 (387)
T COG0654          53 RALERLGLW--DRLEALGVPPLHVMVVDDGGR-RLLIFDAAELG---RGALGYVVP-----RSDLLNALLEAARALPNVT  121 (387)
T ss_pred             HHHHHCCCH--HHHHHCCCCCEEEEEEECCCC-EEEEECHHHCC---CCCCEEEEE-----HHHHHHHHHHHHHHCCCEE
T ss_conf             999984990--777615788603799965996-38981522168---776279988-----8999999999987189829


Q ss_pred             EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             31131565200013443012468980587089950672474157656
Q gi|254781043|r  171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ++..+.++++..++ +.|. + .++. +|+  .+.|+-||-|-|..+
T Consensus       122 l~~~~~v~~~~~~~-~~v~-v-~l~~-dG~--~~~a~llVgADG~~S  162 (387)
T COG0654         122 LRFGAEVEAVEQDG-DGVT-V-TLSF-DGE--TLDADLLVGADGANS  162 (387)
T ss_pred             EEECCEEEEEEECC-CEEE-E-EEEC-CCE--EEECCEEEECCCCCH
T ss_conf             99577799988539-7379-9-9903-991--997599998899876


No 120
>PRK07233 hypothetical protein; Provisional
Probab=99.09  E-value=1.2e-08  Score=75.09  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             66789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r  154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      ..|.++|.+.+.+.|++|..++.|+.+..+ +++|+|+..    +|+  .+.|++||+|+--
T Consensus       197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~~v~~v~~----~g~--~~~ad~VI~a~p~  251 (430)
T PRK07233        197 GTLLDALAEAIEARGGEIRLGTPVTEVVIE-GGVVTGVET----DGE--EEAFDAVISTIPP  251 (430)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEE-CCEEEEEEE----CCC--EEECCEEEECCCH
T ss_conf             999999999999759999979978899995-998999997----994--9993999989998


No 121
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.09  E-value=9.5e-09  Score=75.80  Aligned_cols=165  Identities=17%  Similarity=0.237  Sum_probs=82.2

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      .+||+|||+|++||++|+.++++|.+|+|+||....+..+.....-. .++   .+.|.+. ++. +    ++- +++-.
T Consensus         6 ~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~-~al---~~~s~~~-L~~-l----Gl~-~~i~~   74 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRV-YAF---AADNAAL-LDR-L----GVW-PAVRA   74 (392)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE-EEE---CHHHHHH-HHH-C----CCH-HHHHH
T ss_conf             99889999069999999999866997899917898755568887369-999---8899999-998-7----981-66775


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                      .    ....+..+.-    |+....+.+...   ....  . ......++.     =..+...|.+.+.+.+|++...+.
T Consensus        75 ~----~~~p~~~~~v----~d~~~~~~~~~~---~~~~--~-~~~lg~iv~-----~~~l~~~L~~~~~~~~v~~~~~~~  135 (392)
T PRK08773         75 A----RVQPYRRMRV----WDAGGGGELGFD---ADTL--G-REQLGWIVE-----NDLLVDRLWAAVHAAGIQLHCPAR  135 (392)
T ss_pred             C----CCCCEEEEEE----EECCCCCEEEEC---HHHC--C-CCCCCCEEE-----HHHHHHHHHHHHHCCCCEEECCCE
T ss_conf             1----6773135899----845898347536---5662--8-545653225-----499999999998608998974868


Q ss_pred             EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             652000134430124689805870899506724741576565
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ++++..+.++    +.+ ...+|+  .+.|+-||-|-|..+.
T Consensus       136 v~~~~~~~~~----v~v-~~~dg~--~i~a~lvVgaDG~~S~  170 (392)
T PRK08773        136 VVELEQDADG----VRL-RLDDGS--RLEAALAIAADGAAST  170 (392)
T ss_pred             EEEEEECCCE----EEE-EECCCC--EEEEEEEEECCCCCCH
T ss_conf             9999966985----899-977997--9998899983788747


No 122
>PRK08774 consensus
Probab=99.07  E-value=8.9e-09  Score=75.97  Aligned_cols=166  Identities=17%  Similarity=0.170  Sum_probs=84.4

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |.+.|||||||+|++|+++|+.+++.|.+|+|||+.+...-.+.              .|+         +.. .+    
T Consensus         1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~~~~~~~~--------------~d~---------R~~-al----   52 (402)
T PRK08774          1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATPAGAPPAV--------------FDQ---------RNL-SF----   52 (402)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--------------CCC---------CEE-EE----
T ss_conf             98998789999169999999999668997899937998888667--------------873---------167-73----


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCE---EEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-C
Q ss_conf             99999998899999999869981327--99855---100146411456787656407986665426678999999873-1
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRN--EAGKI---YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-N  167 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~--~~G~~---~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~  167 (611)
                              ++..++.|+.+|+ |+.-  ....+   .....+.............+.....--.-..+...|.+++.+ .
T Consensus        53 --------~~~s~~~L~~lGv-~~~l~~~~~pi~~i~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~l~~~~  123 (402)
T PRK08774         53 --------AAATVNALGALGV-MAKLRSAPGPIRRIHVSRAGDFGRVQLDAADYGRDAFGQVVVARDFGEALQARLDELT  123 (402)
T ss_pred             --------CHHHHHHHHHCCC-HHHHHHHCCCEEEEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             --------7999999998898-6876640565179998507877556536776088764320016999999999998578


Q ss_pred             CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             2303113156520001344301246898058708995067247415765654
Q gi|254781043|r  168 NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       168 gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ++.++..+.++.+....+ .+.++.. ...+|+ ..|+|+-||-|-|+-..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~~g~-~~i~a~llVgADG~~S~v  172 (402)
T PRK08774        124 HLRRYRPARCIGVEPVQD-GLRAVRL-ATADGE-QLVRARLVVGADGSHSAV  172 (402)
T ss_pred             CCEEEECEEEEEEEEECC-CCCEEEE-EECCCC-EEEEECEEEECCCCCCCC
T ss_conf             948982228999999536-8616999-937995-798305999958998452


No 123
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.07  E-value=1.6e-09  Score=80.86  Aligned_cols=35  Identities=37%  Similarity=0.736  Sum_probs=32.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCC
Q ss_conf             1058898996899999999998898299998-6898
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACIT-KVFP   51 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lie-K~~~   51 (611)
                      +|||+|||+|.||+.||+.|++.|++|+||| |..+
T Consensus         3 ~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~   38 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL   38 (466)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             469899997889999999999789939999679996


No 124
>PRK07608 hypothetical protein; Provisional
Probab=99.05  E-value=2.9e-08  Score=72.68  Aligned_cols=152  Identities=23%  Similarity=0.271  Sum_probs=80.8

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             23105889899689999999999889829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      .|+|||+|||+|++||++|+.++++|.+|+|+|+.+.......   .++         |+         +. ..+     
T Consensus         3 ~m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~---~~~---------~~---------R~-~al-----   55 (389)
T PRK07608          3 HMKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQPPAPRPAD---DAW---------DS---------RV-YAI-----   55 (389)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCC---------CC---------CE-EEE-----
T ss_conf             8999889999068999999999837998899958998766666---676---------75---------17-898-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCC----------CC-----CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             99999988999999998699----------81-----3279985510014641145678765640798666542667899
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGV----------PF-----SRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT  159 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv----------~f-----~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~  159 (611)
                             ++..++.|+++|+          |+     ..+..+.+....         .....+...+.-.  -..+...
T Consensus        56 -------~~~s~~~L~~lGv~~~l~~~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ii~--~~~l~~~  117 (389)
T PRK07608         56 -------SPSSQAFLERLGVWQALDAARLAPVYDMRVYGDAHGRLHFSA---------YQAAVPQLAWIVE--SSLIERA  117 (389)
T ss_pred             -------CHHHHHHHHHCCCHHHHHHHCCCEEEEEEEECCCCCEEECCC---------CCCCCCCEEEEEE--HHHHHHH
T ss_conf             -------899999999879854555432640678999647785463463---------3358984144410--7999999


Q ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             99998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      |.+.+.+.+...+..+.++.+..++++ |   . ....+|+  .+.|+-||-|-|.-..
T Consensus       118 L~~~~~~~~~i~~~~~~~~~~~~~~~~-v---~-v~~~~g~--~i~a~llVgADG~~S~  169 (389)
T PRK07608        118 LDAALRFQGNLTWFDARAQGLDVTPDA-A---T-LTLSDGQ--VLEADLVVGADGAHSW  169 (389)
T ss_pred             HHHHHHHCCCEEEECCEEEEEEECCCC-E---E-EEECCCC--EEEEEEEEEECCCCHH
T ss_conf             999986189869988788899972991-7---9-9988998--9996589996699768


No 125
>PRK08244 hypothetical protein; Provisional
Probab=99.05  E-value=1.9e-08  Score=73.76  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=85.5

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      +++||||||+|.+||++|+.+++.|.+|+||||.+...-.+.+.  ++       .+.+.+.     ++. -|+.+ ++ 
T Consensus         1 m~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~--~l-------~~rt~ei-----l~~-~Gl~~-~l-   63 (494)
T PRK08244          1 MKTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKAL--TL-------HPRTLEL-----LEM-RGLLE-RF-   63 (494)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EC-------CHHHHHH-----HHH-CCCHH-HH-
T ss_conf             99899999947899999999997799999990899988899874--60-------8999999-----998-78988-98-


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                         .+.+..    +..|  .|... +..+   .|...      ....+...+..   -..+...|.+.+.+.+++++..+
T Consensus        64 ---~~~g~~----~~~~--~~~~~-~~~~---~~~~~------~~~~~~~~~~~---Q~~le~iL~~~a~~~g~~v~~g~  121 (494)
T PRK08244         64 ---LEKGRK----LPSG--HFAGL-DTRL---DFSAL------DTRANYTLFLP---QAETEKILEEHARSLGVEILRGH  121 (494)
T ss_pred             ---HHHCEE----CCCC--EEECC-CCCE---ECCCC------CCCCCCEEEEC---HHHHHHHHHHHHHHCCCEEEECC
T ss_conf             ---852107----6563--68144-3303---20335------77888269815---59999999999984798899686


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             565200013443012468980587089950672474157656
Q gi|254781043|r  176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .++.+..+++ .|. +...+ .+| ...++|+-||=|-|+-+
T Consensus       122 e~~~~~~~~d-~V~-~~~~~-~~g-~~~i~a~ylVGaDGa~S  159 (494)
T PRK08244        122 EALAVRQDGD-GVE-VVVRG-PDG-LRTLTSLYAVGADGAGS  159 (494)
T ss_pred             EEEEEEECCC-EEE-EEEEE-CCC-CEEEEEEEEEEECCCCC
T ss_conf             8999998699-789-99990-897-68998779998246672


No 126
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.04  E-value=1.3e-08  Score=74.82  Aligned_cols=57  Identities=19%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             266789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      +..+...+.+.+.+.|.+|..++.|..+..++ ++|.+.+   ..+|+  .|.|++||+|+-.
T Consensus       207 ~~~~~~~~~~~l~~~g~~i~l~~~V~~I~~~~-~~v~~~~---~~~g~--~~~ad~VI~a~p~  263 (430)
T TIGR03467       207 SELFPEPARRWLDSRGGEVRLGHRVRALEANA-GGIRALI---RAGGE--TLTADAVVLAVPP  263 (430)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEEEEE---ECCCE--EEECCEEEECCCH
T ss_conf             77799999999996497677698368999979-9889999---50987--9977999989898


No 127
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104   Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=99.03  E-value=1.6e-08  Score=74.36  Aligned_cols=192  Identities=20%  Similarity=0.241  Sum_probs=105.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CHHC----------------CCCEE--------------
Q ss_conf             105889899689999999999889829999868988521--0411----------------65342--------------
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH--TVAA----------------QGGIA--------------   64 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~--s~~A----------------~GGi~--------------   64 (611)
                      +..|||||+|+|||+||.=+|++|++|.|+|.....+|+  |+--                -|||-              
T Consensus         1 ~~~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GGCAgTFrRr~ftFDVGATQVAGLEpGGiH~riF~~L~~pLP~A   80 (499)
T TIGR02733         1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGLPLPEA   80 (499)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEECCCCCCCHHHHHHHHCCCCCCCC
T ss_conf             97069981872678999999853996799974012787544343687454045522136789857999998548878988


Q ss_pred             ------E--ECCCCC--------CCCHHHHH-------------HHHHHHCCCC-----------CCHHHHHHHHHHHHH
Q ss_conf             ------5--137899--------99999999-------------9899845887-----------799999999998899
Q gi|254781043|r   65 ------A--SLANMT--------PDSWQWHL-------------YDTIKGSDWL-----------GDVDAIQYLAMEAPQ  104 (611)
Q Consensus        65 ------a--~~~~~~--------~Ds~~~~~-------------~Dt~~~g~~l-----------~d~~lv~~~~~~a~~  104 (611)
                            |  .++...        +|.|..-.             -+.+-...|-           +-.|+-..+..==|+
T Consensus        81 ~~lDPAC~V~L~dg~~PI~lWhDp~rW~~ER~~qFPGSe~FW~l~~~lf~~nW~F~~RdPvLPprn~WDL~QL~~AlRP~  160 (499)
T TIGR02733        81 KILDPACAVYLPDGSEPINLWHDPERWQKERERQFPGSERFWSLCEQLFQSNWRFAQRDPVLPPRNLWDLLQLVSALRPD  160 (499)
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf             40688336777879511002358078899986408885778999999986053011678635677778999999874630


Q ss_pred             HH-----------HHHHHCCCCCCCCCC-------CCEEEE-------CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             99-----------999986998132799-------855100-------14641145678765640798666542667899
Q gi|254781043|r  105 SV-----------YELEHYGVPFSRNEA-------GKIYQR-------PFGGHMQNYGEGPPVQRTCAAADRTGHAILHT  159 (611)
Q Consensus       105 ~i-----------~~Le~~Gv~f~r~~~-------G~~~~~-------~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~  159 (611)
                      ++           |+|.-.|+-=+|.=.       -.|.|.       -+|.......   ..|+-.|.=-++=+.|=+.
T Consensus       161 tLlT~~~~~~Tv~DlL~l~gl~~D~RLr~FLDLQLKLYSQ~~Ad~TAaLYgATvL~~~---Q~P~GLwHL~GSMQ~LSD~  237 (499)
T TIGR02733       161 TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA---QAPRGLWHLHGSMQVLSDR  237 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---CCCCCCCCCCCCHHHHHHH
T ss_conf             4556877753399999983368883588875554223322203678999999999984---3787550013202357899


Q ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEE
Q ss_conf             99998731230311315652000134430124689805870899506724741
Q gi|254781043|r  160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLA  212 (611)
Q Consensus       160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILA  212 (611)
                      |.+..++.|.+++.+++|+++.+++ ++..+.++.+.++++...++|.-||..
T Consensus       238 L~~al~~~GG~l~~gqrV~~I~~~~-~~~~~~~v~~~r~~~~~~~~A~d~V~~  289 (499)
T TIGR02733       238 LVEALKRDGGRLLTGQRVTAIETKG-GRAGWVVVVDSRKQEDEQVKADDVVAN  289 (499)
T ss_pred             HHHHHHHCCCEEEEEEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHCCEEE
T ss_conf             9999986798798600232344316-841568874164114677442031200


No 128
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.02  E-value=2.2e-08  Score=73.36  Aligned_cols=153  Identities=24%  Similarity=0.351  Sum_probs=84.2

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             23105889899689999999999889829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      ++.+||+|||+|++|+.+|+.+++.|.+|+|+||.+.......            ..+|.         +. ..+     
T Consensus         3 ~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~------------~~~d~---------R~-~al-----   55 (391)
T PRK08020          3 NQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVAD------------SQPDV---------RI-SAI-----   55 (391)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC------------CCCCC---------EE-EEE-----
T ss_conf             9998489999369999999999866997899948998766655------------79873---------38-987-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCC----------CCCCC-----CCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             99999988999999998699----------81327-----9985510014641145678765640798666542667899
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGV----------PFSRN-----EAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT  159 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv----------~f~r~-----~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~  159 (611)
                             ++..++.|+++|+          |+.+-     ..+.+.   |....      ...+-.-|.-.  -..+..+
T Consensus        56 -------~~~s~~~L~~lGvw~~~~~~~~~~~~~~~~~~~~~~~~~---f~~~~------~~~~~lg~~v~--~~~l~~~  117 (391)
T PRK08020         56 -------SAASVALLKGLGVWDAVQAMRCHPYRRLETWEWETAHVV---FDAAE------LKLPELGYMVE--NRVLQQA  117 (391)
T ss_pred             -------CHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCEEE---ECHHH------CCCCCCCCCCC--HHHHHHH
T ss_conf             -------889999999888848778625687148986127885587---25443------28975401212--6999999


Q ss_pred             HHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             9999873-12303113156520001344301246898058708995067247415765654
Q gi|254781043|r  160 LYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       160 L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      |.+++.+ .+|+++..+.++++-.++++ +   . ....+|+  .+.|+-||-|-|....+
T Consensus       118 L~~~l~~~~~v~~~~~~~v~~i~~~~~~-~---~-v~l~~g~--~i~a~lvIgADG~~S~v  171 (391)
T PRK08020        118 LWQALEAHPNVTLRVPASLIALHRHDDG-W---E-LELADGE--TIQAKLVIGADGANSQV  171 (391)
T ss_pred             HHHHHHHCCCCEEEECCEEEEEEECCCE-E---E-EEECCCC--EEEECEEEEECCCCCHH
T ss_conf             9999983899699958802688974986-8---9-9948999--99837999907997054


No 129
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.02  E-value=5e-08  Score=71.09  Aligned_cols=69  Identities=25%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|-|||||.|||+||..+++.|.+|.|.|+.+..+        |+.   ....|+              |.-..+.+.  
T Consensus       312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~G--------GlL---~yGIP~--------------fRLPK~vv~--  364 (639)
T PRK12809        312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG--------GML---TFGIPP--------------FKLDKTVLS--  364 (639)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CEE---EECCCC--------------CCCCHHHHH--
T ss_conf             89998975899999999997599069993688889--------868---535874--------------527778999--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             998899999999869981327
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRN  119 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~  119 (611)
                           ..|++|+++||.|..+
T Consensus       365 -----rei~~l~~lGV~f~~n  380 (639)
T PRK12809        365 -----QRREIFTAMGIDFHLN  380 (639)
T ss_pred             -----HHHHHHHHCCCEEEEC
T ss_conf             -----9999998649889919


No 130
>PRK06834 hypothetical protein; Provisional
Probab=99.02  E-value=1.6e-08  Score=74.36  Aligned_cols=153  Identities=18%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             1058898996899999999998898299998689885-210411653425137899999999999899845887799999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR-SHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~-g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ++||||||+|.+||++|+.+++.|.+|+||||.+... -++.+.  ++       ...+.+.     ++. -|+.++   
T Consensus         3 ~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA~--~l-------~~rt~ei-----l~~-~Gl~d~---   64 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRAG--GL-------HARTLEV-----LDQ-RGIVDR---   64 (488)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEE--EE-------CHHHHHH-----HHH-CCCHHH---
T ss_conf             89899989388999999999976999999968999877698484--77-------8999999-----998-799899---


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                        +...+ ....   ..+..+.+     +....++       ...++.-.+.     -..+.+.|.+.+.+.+++++..+
T Consensus        65 --~~~~g-~~~~---~~~~~~~~-----~~~~~~p-------~~~~~~~~~~-----Q~~lE~iL~~~l~~~~~~v~~g~  121 (488)
T PRK06834         65 --FLAEG-QVAQ---VTGFAQIR-----LDISDFP-------TRHNYGLALR-----QNHIERILAEWVGELGVPIYRGR  121 (488)
T ss_pred             --HHHCC-CCCC---CCCCCCEE-----CCHHHCC-------CCCCCEEEEE-----HHHHHHHHHHHHHHCCCEEEECC
T ss_conf             --98426-5211---12401202-----5676587-------7778378854-----89999999999985899798088


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             565200013443012468980587089950672474157656
Q gi|254781043|r  176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .++++-.+++|    |.+ ...+|+  +++|+-||=|-|+-+
T Consensus       122 ~v~~~~~~~~g----V~v-~~~dg~--ti~a~ylVGaDGa~S  156 (488)
T PRK06834        122 EVTGFTQDDTG----VDV-ELSDGS--TLRAQYLVGCDGGRS  156 (488)
T ss_pred             EEEEEEECCCE----EEE-EECCCC--EEEEEEEEEECCCCC
T ss_conf             89999983996----899-988982--798758997067674


No 131
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.01  E-value=1.4e-08  Score=74.61  Aligned_cols=35  Identities=29%  Similarity=0.536  Sum_probs=32.2

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             31058898996899999999998898299998689
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      |+|||+|||+|+||++|||++.++|+++.+|+.+.
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             96307997672888899999996588079985770


No 132
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.00  E-value=5.3e-08  Score=70.90  Aligned_cols=170  Identities=21%  Similarity=0.235  Sum_probs=87.0

Q ss_pred             EEECEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             31058898996899999999998-89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAE-KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e-~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      .++||||||+|.+||++|+.+++ +|.+|.||||.+-....+.+.  |++       +-+.|.     ++. -|+.+ + 
T Consensus        31 ~~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~~~~~~~rA~--gl~-------~RTlEi-----l~~-~Gla~-~-   93 (634)
T PRK08294         31 DEVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKPGRLELGQAD--GIA-------CRTMEM-----FQA-FGFAE-R-   93 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--EEC-------HHHHHH-----HHH-CCCHH-H-
T ss_conf             858889999658999999998713799889992799999998837--777-------899999-----987-79858-9-


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCC-CCC--CCEEEECCCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHCC--
Q ss_conf             999999889999999986998132-799--855100146411456787-65640798666542667899999987312--
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSR-NEA--GKIYQRPFGGHMQNYGEG-PPVQRTCAAADRTGHAILHTLYGQALKNN--  168 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r-~~~--G~~~~~~~gg~~~~~~~g-~~~~R~~~~~d~tG~~i~~~L~~~~~~~g--  168 (611)
                         +.+++.    ++.  .+.|-+ ++.  +.+..  . +.......+ ..+|...-    .-..+.+.|.+.+++.+  
T Consensus        94 ---i~~~g~----~~~--~~~~w~~~~~~~~~i~r--~-~~~~~~~~~~s~~p~~~l----~Q~~~e~~l~~~l~~~~~~  157 (634)
T PRK08294         94 ---ILAEAY----WIN--ETAFWKPDPANPARIVR--S-GRVQDVEDGLSEFPHVIL----NQARVHDYFLDFMRNSPTR  157 (634)
T ss_pred             ---HHHCCE----ECC--EEEEECCCCCCCCCEEE--C-CCCCCCCCCCCCCCCEEC----CHHHHHHHHHHHHHHCCCE
T ss_conf             ---985260----144--37885578877761355--5-757777777677862754----5488999999999865870


Q ss_pred             CEEECCCEEEEEEECCCCC-CEEEEEEEE---CCCEEEEECCCCEEEECCCCCC
Q ss_conf             3031131565200013443-012468980---5870899506724741576565
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGC-CVGVVAWQL---ETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~-V~Gav~~~~---~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +++...+.++++-.++++. .+-|...+.   .+|+.++++||-||=|-|+-+.
T Consensus       158 v~~~~g~~~~~~~~d~~~~~pV~vtl~~~~~~~~g~~~tvrA~YlVGcDGA~S~  211 (634)
T PRK08294        158 LEPDYGYEFVDLEVDEDGDYPVTVTLRRTDGEREGEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             EEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCH
T ss_conf             786541599888975787753599997268766784379996179876877632


No 133
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101   Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=99.00  E-value=1.2e-08  Score=75.16  Aligned_cols=182  Identities=23%  Similarity=0.303  Sum_probs=101.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH-H-CCC-----------CE-------------EEECC---
Q ss_conf             0588989968999999999988982999986898852104-1-165-----------34-------------25137---
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV-A-AQG-----------GI-------------AASLA---   68 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~-~-A~G-----------Gi-------------~a~~~---   68 (611)
                      ||+||||||+.||.+|-.++.+|++|+|+||=-+.+|++- + -+|           |+             +++..   
T Consensus         1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~IPGGS~G~f~R~GY~FDVGaS~iFGfg~~G~~NLlTrALaaVg~~~e   80 (506)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGEKLE   80 (506)
T ss_pred             CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             94789816831789999998546225532201147887675104763442022445415777745589999998622410


Q ss_pred             ----------CCC-------CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCCC
Q ss_conf             ----------899-------99999999989984588779999999999889999999986998-----------13279
Q gi|254781043|r   69 ----------NMT-------PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVP-----------FSRNE  120 (611)
Q Consensus        69 ----------~~~-------~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~-----------f~r~~  120 (611)
                                ..+       .-.++.+++|...  .+=-..+=++.|-++.-+..+-|..+-+.           |-+.+
T Consensus        81 ~ipDp~~~~yHlP~~L~~~v~R~Y~~F~~~L~a--~FP~E~~Gi~~FYd~CW~vF~cLn~~eL~SLEeP~YL~~~Ff~~P  158 (506)
T TIGR02730        81 TIPDPVQIHYHLPNGLNVKVDREYDKFLQELVA--KFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLLRVFFKKP  158 (506)
T ss_pred             CCCCCCEEEEECCCCCCEEEECCHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCH
T ss_conf             257853688776899851473318899999986--177501027787777889997530022223457058999986232


Q ss_pred             -------------CCCEEEE--------CC-----------C-CCCC----------CCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             -------------9855100--------14-----------6-4114----------56787656407986665426678
Q gi|254781043|r  121 -------------AGKIYQR--------PF-----------G-GHMQ----------NYGEGPPVQRTCAAADRTGHAIL  157 (611)
Q Consensus       121 -------------~G~~~~~--------~~-----------g-g~~~----------~~~~g~~~~R~~~~~d~tG~~i~  157 (611)
                                   -|.++.+        .|           . -.+.          ....|..+|+     +..| +|-
T Consensus       159 l~CLgL~~yLP~N~G~iAR~~I~Dp~LL~FID~ECf~~SvvpA~~TPMINAgMVfsDRH~GGiNYP~-----GGVG-~IA  232 (506)
T TIGR02730       159 LACLGLAKYLPQNVGDIARRYIKDPELLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPK-----GGVG-QIA  232 (506)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCC-----CCHH-HHH
T ss_conf             5788898750114457878523852143232100445663010258740011210034557633898-----8754-899


Q ss_pred             HHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEEC
Q ss_conf             99999987312303113156520001344301246898058708995067247415
Q gi|254781043|r  158 HTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLAT  213 (611)
Q Consensus       158 ~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILAT  213 (611)
                      +.|.+-+.+.|.+|+++..|+++|.|+ ++.+||.   +.+|+  .|+||.||--.
T Consensus       233 ~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~-~~AvGV~---L~~G~--~~~~k~ivSNA  282 (506)
T TIGR02730       233 EKLVKGLEKHGGKIRYKARVTKIILEN-GKAVGVK---LADGE--KIYAKRIVSNA  282 (506)
T ss_pred             HHHHHHHHHCCCCEEEEEEEEEEEECC-CCEEEEE---ECCCC--EEECCEEEECC
T ss_conf             999988874164056300245545208-8455568---64883--65211676316


No 134
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324   These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=99.00  E-value=3.9e-09  Score=78.37  Aligned_cols=289  Identities=24%  Similarity=0.378  Sum_probs=137.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEECCCCCC------CCHHHHHHHHHHHCCCC
Q ss_conf             1058898996899999999998898299998689-8852104116534251378999------99999999899845887
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASLANMTP------DSWQWHLYDTIKGSDWL   89 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~~~~~~------Ds~~~~~~Dt~~~g~~l   89 (611)
                      .||+-|||+|.-|++||-.||..|+||.+.|.-- +..|--+-.-||.+..-+=.+.      -.+..+|+|.- +=.|-
T Consensus         2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViRGCVPKKl~VYaS~f~~~ledA~-gYGW~   80 (478)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIRGCVPKKLMVYASEFAEELEDAK-GYGWT   80 (478)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHH-CCCCE
T ss_conf             76306870671668999999872990898215678735122377467478824407503572122302335552-48846


Q ss_pred             CCHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-H
Q ss_conf             79999---9999998899999999869981327998551001464114567876564079866654266789999998-7
Q gi|254781043|r   90 GDVDA---IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-L  165 (611)
Q Consensus        90 ~d~~l---v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~  165 (611)
                      ...+.   ++.|...--+.|..|+                                                .||.+. .
T Consensus        81 i~e~~~f~W~~l~~~k~~Ei~RL~------------------------------------------------~lY~~~L~  112 (478)
T TIGR01424        81 IVEKARFDWKKLLAKKDKEIARLS------------------------------------------------GLYKKLLA  112 (478)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHH------------------------------------------------HHHHHHHH
T ss_conf             872111577898765778888666------------------------------------------------88899888


Q ss_pred             HCCCEEECCCEEEEEEECCCCCCEEEEEEE-ECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf             312303113156520001344301246898-0587089950672474157656543342106401444887887513653
Q gi|254781043|r  166 KNNAEFFIEYFALDLIINSEGCCVGVVAWQ-LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL  244 (611)
Q Consensus       166 ~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~-~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l  244 (611)
                      +.|++++..- + + |+|. +.|. +...| -.+|+...|.|+.+++||||=..     .-| ..-          |.+|
T Consensus       113 ~AGv~Ll~Gr-A-~-~vd~-~tVe-v~~~dGsddg~ki~yTA~kIliA~Ggrps-----~kP-~lP----------G~El  171 (478)
T TIGR01424       113 KAGVELLEGR-A-E-LVDP-NTVE-VLEKDGSDDGKKITYTAKKILIAVGGRPS-----VKP-ELP----------GHEL  171 (478)
T ss_pred             HHCEEEEECC-E-E-EECC-CEEE-EEEECCCCCCCEEEEEEEEEEEEECCCCC-----CCC-CCC----------CCCC
T ss_conf             5330443043-3-7-8368-1579-74103787883167877599998778787-----888-856----------8521


Q ss_pred             C--CCCCCCC--CCCCC--CCCEEECCCC---CCCCCEEE-EECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCC
Q ss_conf             3--3322232--88844--2201430456---65578089-832686125540765100475201115688998817888
Q gi|254781043|r  245 Q--DMEFVQF--HPTGI--YGAGCLITEG---ARGEGGYL-VNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV  314 (611)
Q Consensus       245 ~--~mEf~qf--hPt~~--~~~~~l~~~~---~rg~G~~l-~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~  314 (611)
                      .  -=|.+..  .|+.+  .+.|..-.|.   .||.|... +=-.|+..+...+.          --|.-..+-.+.||+
T Consensus       172 gITSdEaf~L~~lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~iL~GFD~----------d~R~~~~~~le~~Gi  241 (478)
T TIGR01424       172 GITSDEAFHLPTLPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEKILRGFDD----------DMRAELAEELEERGI  241 (478)
T ss_pred             CCCCHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCCCH----------HHHHHHHHHHHCCCE
T ss_conf             3041324172005546899867600120222323678325234516654676868----------999999998752973


Q ss_pred             C--------------CCCCEEEEEEC-CCCHHHHHH-------HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             8--------------88874688611-179899999-------8537999997643678654406752033100123421
Q gi|254781043|r  315 G--------------KSKDHIHLYLN-HLDPAVLQE-------RLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPT  372 (611)
Q Consensus       315 ~--------------~~~~~v~ld~~-~~~~~~l~~-------~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~v  372 (611)
                      .              .|.  ...-++ .-+.+.+.+       |.|+...+-.+..|++.....|| .|. ..+||=|.|
T Consensus       242 ~i~~~~~~~~i~~~~~GR--~~~~~sGe~~~~~vAd~vl~AtGR~Pn~~GLgLE~aGV~~~~~sie-GPG-ystmgAi~V  317 (478)
T TIGR01424       242 RIVPKDSVTSIEKVDDGR--LKVTLSGEKDEEIVADVVLFATGRVPNVKGLGLEAAGVELNDKSIE-GPG-YSTMGAIAV  317 (478)
T ss_pred             EEEECCHHHHHHCCCCCC--EEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCC-CCC-CCCCCCEEE
T ss_conf             895010443642078987--8999746899816543323200887765763610115065101014-787-441253665


Q ss_pred             CCCCEEECCCCCCCCCCCCCEEECCCC
Q ss_conf             577158537788853322760340212
Q gi|254781043|r  373 NYWGEVLDANSKNPERFAPGLMAIGEA  399 (611)
Q Consensus       373 d~~g~v~~~~~~~~~t~i~GLyAaGe~  399 (611)
                      |..-          +|++|+.||.|++
T Consensus       318 d~YS----------~T~~P~IyAvGDv  334 (478)
T TIGR01424       318 DEYS----------RTSVPSIYAVGDV  334 (478)
T ss_pred             CCCC----------CCCCCCEEEEECC
T ss_conf             1546----------7885777886031


No 135
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.99  E-value=8.3e-08  Score=69.63  Aligned_cols=69  Identities=20%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|-|||||.|||+||..+++.|.+|.|.|+.+..+        |+-   ....|+              |.-..+.+.  
T Consensus       329 kVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~G--------GlL---~yGIP~--------------fRLpk~vv~--  381 (654)
T PRK12769        329 RVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIG--------GLL---TFGIPA--------------FKLDKSLLA--  381 (654)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC--------CEE---EECCCC--------------CCCCHHHHH--
T ss_conf             89998977899999999997697579952577788--------667---524862--------------227789999--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             998899999999869981327
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRN  119 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~  119 (611)
                           ..+++|+++||.|..+
T Consensus       382 -----~ei~~l~~lGV~f~~n  397 (654)
T PRK12769        382 -----RRREIFSAMGIHFELN  397 (654)
T ss_pred             -----HHHHHHHHCCCEEECC
T ss_conf             -----9999998269889837


No 136
>PRK12831 putative oxidoreductase; Provisional
Probab=98.99  E-value=8.7e-08  Score=69.52  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             23421577158537788853322760340212203356643047643222222321567755665420
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK  435 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~  435 (611)
                      -|+.+|.+|.+. .+.++++|++||+||+|++. .        |.+.+..++-.||.|+.++.+|+.+
T Consensus       405 ~gi~~~~~g~i~-~~~~~~~Ts~~gVFa~GD~~-~--------G~~~vV~Ai~~Gr~AA~~I~~yL~g  462 (464)
T PRK12831        405 PGLEINKRGCIV-ADEETGLTSIEGVYAGGDAV-T--------GAATVILAMGAGKKAAKAIDEYLSK  462 (464)
T ss_pred             CCEEECCCCCEE-ECCCCCCCCCCCEEECCCCC-C--------CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             680277999888-47899842899999827867-6--------8339999999999999999999735


No 137
>PRK07208 hypothetical protein; Provisional
Probab=98.99  E-value=9.8e-08  Score=69.16  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEE
Q ss_conf             66789999998731230311315652000134430124689805870899506724741
Q gi|254781043|r  154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLA  212 (611)
Q Consensus       154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILA  212 (611)
                      .+|..+|.+++.+.|+++..++.++.+..+ ++++..++... .+|.-..+.++.||.+
T Consensus       212 g~l~e~l~~~l~~~G~~i~~n~~V~~I~~~-~~~~~~~~~~~-~~~~~~~~~~d~vIsT  268 (474)
T PRK07208        212 GQLWEAAAEKLEAEGVKVVLNAKVTGLHHD-GGRIVSVVAED-QDGNETTATGDQVISS  268 (474)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEC-CCEEEEEEEEE-CCCCEEEEECCEEEEC
T ss_conf             269999999998729878669878999834-98899999984-2796369988879998


No 138
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.99  E-value=3.3e-08  Score=72.27  Aligned_cols=153  Identities=19%  Similarity=0.246  Sum_probs=82.9

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      +.+||+|||+|++|+++|+.+++.|.+|+|||+.+...... -+...+         |. ..        . .+      
T Consensus         1 m~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~~~~~~~-~~~~~~---------~~-R~--------~-al------   54 (405)
T PRK05714          1 MRADLLIVGAGMVGSALALALEGSGLEVLLVDGGPLSVKPF-DPQAPF---------EP-RV--------S-AL------   54 (405)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCC---------CC-CE--------E-EE------
T ss_conf             99889999905999999999961899789995899777877-667789---------84-25--------5-67------


Q ss_pred             HHHHHHHHHHHHHHHHCCC----------CCC------CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             9999988999999998699----------813------279985510014641145678765640798666542667899
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGV----------PFS------RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT  159 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv----------~f~------r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~  159 (611)
                            ++..++.|+++|+          |+.      ....+.+.   |....      ...+..-+.-.  -..+..+
T Consensus        55 ------~~~s~~~L~~lG~~~~l~~~~~~p~~~~~v~d~~~~~~~~---f~~~~------~~~~~lg~vv~--~~~l~~~  117 (405)
T PRK05714         55 ------SAASQRILERLGAWDGIAARRASPYSDMQVWDGSGTGQIH---FSAAS------VHAEVLGHIVE--NRVVQDA  117 (405)
T ss_pred             ------CHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCCEEE---ECCCC------CCCCCCCCHHH--HHHHHHH
T ss_conf             ------7998999998798165687357761245520589862276---44101------47644411232--6999999


Q ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             99998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      |.+++.+.+|.++..+.+.++-.+.|+ +   . ....+|+  .++|+-||-|-|.-..
T Consensus       118 L~~~l~~~~v~~~~~~~v~~~~~~~~~-~---~-v~l~~g~--~i~a~llVgADG~~S~  169 (405)
T PRK05714        118 LLERLHDSDIGLLANARLEQMRRSGDD-W---L-LTLADGR--QLRAPLVVAADGANSA  169 (405)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCE-E---E-EEECCCC--EEECCEEEECCCCCCH
T ss_conf             999997279889848789999983880-7---9-9967997--9863889995899856


No 139
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.98  E-value=6.8e-08  Score=70.20  Aligned_cols=161  Identities=17%  Similarity=0.202  Sum_probs=83.3

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      .+||||||+|+|||++|+.++++|.+|.|+||.+..+..    +.||+.     .+.+. ..++.     -|+       
T Consensus         2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~~~----G~gi~l-----~pn~~-~~L~~-----lGl-------   59 (400)
T PRK06475          2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQELSEV----GAGLQL-----APNAM-RHLER-----LGV-------   59 (400)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC----CCEEEE-----CHHHH-HHHHH-----CCC-------
T ss_conf             997999895889999999999789999999179988888----847888-----88999-99998-----799-------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCC----CC-CCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCC
Q ss_conf             999988999999998699813----27-99855100-146411456787656407986665426678999999873-123
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFS----RN-EAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNA  169 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~----r~-~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv  169 (611)
                               .+.+.+.|+.-.    ++ ..+..... .+..... ...+.++ ..++     -..+...|.+.+.+ .+|
T Consensus        60 ---------~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~p~-~~i~-----R~~L~~~L~~~~~~~~~i  123 (400)
T PRK06475         60 ---------ADRLSGTGVTPKALYLMDGRKARPLLHMQLGDLAR-KRWHHPY-IVCH-----RADLQSALLDACRNNPGI  123 (400)
T ss_pred             ---------HHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCC-CCCCCCE-EEEE-----HHHHHHHHHHHHHHCCCC
T ss_conf             ---------27888438886259996078674565202443222-2578965-9977-----899999999999748994


Q ss_pred             EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             03113156520001344301246898058708995067247415765654
Q gi|254781043|r  170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ++.....++++..++ +.|. +...+..+  ...+.|+-||=|-|-.+.+
T Consensus       124 ~i~~g~~v~~~~~~~-~~v~-~~~~~~~~--~~~~~adlvIGADGi~S~v  169 (400)
T PRK06475        124 EIKLGAEMTSQRQTG-NSIT-ATIIRTNS--VETVSAAYLIACDGVWSML  169 (400)
T ss_pred             EEECCCEEEEEEECC-CCEE-EEEECCCC--CEEEECCEEEECCCCCCCH
T ss_conf             897387899999528-9604-89973898--6699706899669976313


No 140
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.97  E-value=1.6e-08  Score=74.30  Aligned_cols=56  Identities=21%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             66789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r  154 HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       154 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      ..|+++|.+.+++.|++|..++.|.+++++ +|+.+++..   .+|  ..+.++.||.+..-
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~---~~g--~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRT---SDG--ENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEE-CCCEEEEEE---CCC--CEEECCEEEECCCH
T ss_conf             999999999999749399678713599971-890589980---676--07514689986887


No 141
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.97  E-value=6.7e-08  Score=70.26  Aligned_cols=160  Identities=20%  Similarity=0.284  Sum_probs=83.9

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |-+.++|+|||+|+|||++|+.++++|.+|+|+|+.+..+..    +.||+-  .   +...+. + +.+    |+.+  
T Consensus         1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~~~~----G~gi~l--~---pn~~~~-L-~~l----Gl~~--   63 (396)
T PRK08163          1 MTHVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEI----GAGIQL--G---PNAFSA-L-DAL----GVGE--   63 (396)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC----CCEEEE--C---HHHHHH-H-HHC----CCHH--
T ss_conf             989984999897889999999999789999999179988878----718898--9---899999-9-987----9908--


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf             9999999889999999986998-----132799855100-1464114567876564079866654266789999998731
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVP-----FSRNEAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN  167 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~-----f~r~~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~  167 (611)
                                    .+.+.++.     |....+|....+ +.+.... ...+.++.. .+     -..+...|.+.+.+.
T Consensus        64 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~p~~~-i~-----R~~L~~~Ll~~~~~~  122 (396)
T PRK08163         64 --------------AARQRAVFTDHLTMMDAVDAEEVVRIPTGQAFR-DRFGNPYAV-IH-----RADIHLSLLEAVQDH  122 (396)
T ss_pred             --------------HHHHHCCCCCCEEEEECCCCCEEEEECCCCHHH-HHCCCCEEE-EE-----HHHHHHHHHHHHHHC
T ss_conf             --------------998316676625999768885888504760456-624997268-77-----999999999999856


Q ss_pred             -CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             -230311315652000134430124689805870899506724741576565
Q gi|254781043|r  168 -NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       168 -gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                       +|++..++.++++-.++ +.   |.+. ..+|+  .+.++-||=|-|-.+.
T Consensus       123 ~~v~i~~~~~v~~v~~~~-~~---v~v~-~~dG~--~~~adlvVGADG~~S~  167 (396)
T PRK08163        123 PLVEFRTSTHVVGIEQDG-DG---VTVF-DQQGN--RWTGDALIGCDGVKSV  167 (396)
T ss_pred             CCEEEECCCEEEEEEECC-CE---EEEE-ECCCC--EEEEEEEEECCCCCCH
T ss_conf             981787099999999539-97---9999-88998--9987699964887736


No 142
>PRK07190 hypothetical protein; Provisional
Probab=98.96  E-value=7.2e-08  Score=70.04  Aligned_cols=159  Identities=22%  Similarity=0.192  Sum_probs=87.0

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ..+||||||+|..||++|+.++..|.+|+||||.+.....+.+.  ++       .+.+.+.     +.. -++      
T Consensus         4 ~~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~~~~RA~--~l-------~~rtlei-----l~~-~Gl------   62 (480)
T PRK07190          4 QVADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPLEVGRAD--AL-------NARTLQL-----LEL-ADL------   62 (480)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EE-------CHHHHHH-----HHH-CCC------
T ss_conf             86448999938899999999988799999996999999998675--75-------6899999-----997-597------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC---CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             99999889999999986998132---799855100146411456787656407986665426678999999873123031
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSR---NEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF  172 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r---~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~  172 (611)
                                .+.+...|.++..   -.+|++..+.. . +.....+...+.....   .-..+...|.+.+.+.|+++.
T Consensus        63 ----------~d~l~~~g~~~~~~~~~~~g~~~~~~~-~-~~~~~~~~~~~~~~~~---~Q~~~E~~L~~~~~~~g~~v~  127 (480)
T PRK07190         63 ----------FDELYPLGKPCNTSSVWADGQFISRQS-S-WWEELEGCLHKHFLML---GQSYVEKLLDEKLKETAAAVK  127 (480)
T ss_pred             ----------HHHHHHCCCCCCCEEECCCCEEEECCC-C-CCCCCCCCCCCCEEEE---CHHHHHHHHHHHHHHCCCEEE
T ss_conf             ----------899985177554126712885750246-6-6433567777855851---889999999999986699799


Q ss_pred             CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             131565200013443012468980587089950672474157656
Q gi|254781043|r  173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ..+.++++-.++++    +++ .+.+|+  .++|+-||=|-|+-+
T Consensus       128 ~g~~v~~~~~~~~~----v~~-~l~~ge--~i~a~ylVGcDGa~S  165 (480)
T PRK07190        128 RSTAIVNIEINEAG----CLT-TLANGE--RIQSRYVIGADGSRS  165 (480)
T ss_pred             ECCEEEEEEECCCC----EEE-ECCCCC--EEEEEEEEEECCCCC
T ss_conf             15289999985893----599-848998--998888886067761


No 143
>KOG4716 consensus
Probab=98.96  E-value=6.5e-08  Score=70.36  Aligned_cols=55  Identities=33%  Similarity=0.540  Sum_probs=43.4

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC
Q ss_conf             3231058898996899999999998898299998689885210411653425137
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA   68 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~   68 (611)
                      -++.||+||||+|.+||.||-+|+..|++|++++-..+.--++.|.-||..+..+
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVG   70 (503)
T KOG4716          16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVG   70 (503)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECC
T ss_conf             3477447998688513667799886087079996124578887455585466536


No 144
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.95  E-value=7.7e-08  Score=69.87  Aligned_cols=68  Identities=21%  Similarity=0.277  Sum_probs=48.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|.|||||.|||+||..++.+|.+|.|.||.+..+        |+..   ...|+              |.--++.+.  
T Consensus       139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~G--------Gml~---~GIP~--------------yRLP~~vl~--  191 (560)
T PRK12771        139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLG--------GMMR---YGIPG--------------YRLPRDVLD--  191 (560)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC--------CEEE---CCCCC--------------CCCCHHHHH--
T ss_conf             89998977899999999997698589967678889--------8883---56875--------------447589999--


Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             99889999999986998132
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSR  118 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r  118 (611)
                           ..|+++.++||.|..
T Consensus       192 -----~ei~~i~~~GV~~~~  206 (560)
T PRK12771        192 -----AEIQRILDLGVEVKL  206 (560)
T ss_pred             -----HHHHHHHHCCCEEEE
T ss_conf             -----999999964967983


No 145
>PRK08132 hypothetical protein; Provisional
Probab=98.95  E-value=9.4e-08  Score=69.28  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=89.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      ++||||||+|.+||++|+.++..|.+|+||||.+....++.+.  ++       ...+.+. ++.     -|+.      
T Consensus        23 ~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~~~~~pRA~--~~-------~~rtmei-l~~-----lGl~------   81 (549)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAI--CF-------SKRSLEI-FDR-----LGCG------   81 (549)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE--EE-------CHHHHHH-HHH-----CCCH------
T ss_conf             6999999925799999999998799999995999999999788--88-------9899999-998-----6992------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCC-C-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEEC
Q ss_conf             99998899999999869981327998551001464-1-14567876564079866654266789999998731-230311
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGG-H-MQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFI  173 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg-~-~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~  173 (611)
                                +.+.+.|++|.   .++...+...- + ......+..++..+..   .-..+...|.+.+.+. ++++..
T Consensus        82 ----------~~i~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l---~Q~~lE~~L~~~~~~~~~v~vr~  145 (549)
T PRK08132         82 ----------ERMVDKGVSWN---VGKVFLRDEEVYRFDLLPEPGHRRPAFINL---QQYYIEGYLVDRAQALPNIDLRW  145 (549)
T ss_pred             ----------HHHHHCCCCCC---CCEEEECCCEEEEECCCCCCCCCCCCEEEC---CHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             ----------89996177444---644885686577604788888766815867---99999999999998689978995


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             315652000134430124689805870899506724741576565
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+.++.+-.++|| |. +.. ...+|. +.++|+-||=|-|+-+.
T Consensus       146 g~ev~~~~q~~d~-V~-~~v-~~~~g~-~~vrA~ylVGaDGarS~  186 (549)
T PRK08132        146 KNKVTGVEQHADG-VV-LTV-ETPDGP-YTLEADWVIACDGARSP  186 (549)
T ss_pred             CCEEEEEEECCCC-EE-EEE-ECCCCC-EEEEEEEEEECCCCCCH
T ss_conf             7689999984994-69-999-879986-89998899863778773


No 146
>PRK11749 putative oxidoreductase; Provisional
Probab=98.94  E-value=4.5e-08  Score=71.41  Aligned_cols=59  Identities=19%  Similarity=0.398  Sum_probs=41.7

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             342157715853778885332276034021220335664304764322222232156775566542026
Q gi|254781043|r  369 GIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS  437 (611)
Q Consensus       369 Gi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~  437 (611)
                      |+..|.++.++. +.++++|++||+||+|++. .|        ......++-.|+.|++++.+|+..++
T Consensus       400 g~~~~~~g~i~~-~d~~~~Ts~~gVFAaGD~~-~G--------~~~vv~Ai~~Gr~AA~~I~~~L~G~~  458 (460)
T PRK11749        400 GLAVTRWGTIIA-DDETGRTSLPGVFAGGDIV-TG--------AATVVLAVGDGKDAAEAIHEYLEGAA  458 (460)
T ss_pred             CCEECCCCCEEE-CCCCCCCCCCCEEEECCCC-CC--------CHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             812768999884-6899722899999945877-67--------05999999999999999999858988


No 147
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.93  E-value=1.4e-07  Score=68.18  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=45.4

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             23421577158537788853322760340212203356643047643222222321567755665420265
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP  438 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~  438 (611)
                      .||..|.+|.+. .+..+++|++||+||+|++. .        |.+.+..++-.|+.|++++.+|+.+.+.
T Consensus       411 ~gl~~d~~G~i~-vd~~~~~Ts~~gVFA~GD~~-~--------G~~~vv~Ai~~Gr~AA~~I~~~L~G~~~  471 (472)
T PRK12810        411 FGVELDERGRVA-ADEGAYQTSNPKVFAAGDMR-R--------GQSLVVWAIAEGRQAARAIDAYLMGSTP  471 (472)
T ss_pred             CCCEECCCCCEE-ECCCCCCCCCCCEEEECCCC-C--------CHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             680287999888-68998745999999836877-7--------8169999999999999999998479989


No 148
>PRK08013 hypothetical protein; Provisional
Probab=98.93  E-value=1.5e-07  Score=67.87  Aligned_cols=151  Identities=20%  Similarity=0.264  Sum_probs=81.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      .|||+|||+|++|+++|+.+++.|.+|+||||..+....+.... ...+.                     .+ +     
T Consensus         3 ~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~~~~~~~~~~~-~~R~~---------------------al-~-----   54 (400)
T PRK08013          3 SVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRVPEPLAADAPP-QLRVS---------------------AI-N-----   54 (400)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCEEE---------------------EE-C-----
T ss_conf             67889999359999999999718995899918998767788887-70444---------------------00-8-----


Q ss_pred             HHHHHHHHHHHHHHHCCC----------CC------CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             999988999999998699----------81------32799855100146411456787656407986665426678999
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGV----------PF------SRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTL  160 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv----------~f------~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L  160 (611)
                            +..++.|+++|+          ++      +++.-|.+...         .....++...+.-.  -..+...|
T Consensus        55 ------~~s~~~L~~lGl~~~i~~~~~~~~~~~~v~~~~~~g~~~~~---------~~~~~~~~lg~ii~--~~~l~~~L  117 (400)
T PRK08013         55 ------AASEKLLTRLGVWQDILARRASCYHGMEVWDKDSFGHISFD---------DQSMGYSHLGHIVE--NSVIHYAL  117 (400)
T ss_pred             ------HHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCCEEECC---------CCCCCCCCCEEEEC--CHHHHHHH
T ss_conf             ------99999999879807668606776115798637877524326---------20138752304302--08899999


Q ss_pred             HHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             9998731-2303113156520001344301246898058708995067247415765654
Q gi|254781043|r  161 YGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       161 ~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ++++.+. +|+++..+.+.++..++ ..+ .+   ...+|+  .|.|+-||-|-|....+
T Consensus       118 ~~~~~~~~~v~~~~~~~v~~i~~~~-~~~-~v---~l~~g~--~i~a~lvVgADG~~S~v  170 (400)
T PRK08013        118 WQKAQQSSDITLLAPAELQQVAWGE-NEA-FL---TLKDGS--MLTARLVIGADGANSWL  170 (400)
T ss_pred             HHHHHHCCCEEEECCCEEEEEEECC-CEE-EE---EECCCC--EEEEEEEEECCCCCCHH
T ss_conf             9999868982998686689987169-715-99---947998--99742899978876132


No 149
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.92  E-value=1.1e-07  Score=68.92  Aligned_cols=166  Identities=19%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             105889899689999999999889--829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      +.||+|||+|++|+++|+.+++.|  .+|+++|+.+......    .+-+.++.   +.|.+ .++. +    |+. +++
T Consensus         1 ~~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~----d~Ra~al~---~~s~~-~L~~-l----Gv~-~~l   66 (403)
T PRK07333          1 QRDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSR----DPRASAIA---AAARR-MLEA-L----GVW-QEI   66 (403)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCEEEEEC---HHHHH-HHHH-C----CCH-HHH
T ss_conf             983999994699999999998469996699982886668788----87688867---99999-9998-7----987-887


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             9999998899999999869981327998-551001464114567876564079866654266789999998731230311
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAG-KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G-~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                          ..++. .+   ..+-+.-.+..+. ......|.+..   ..+.+....+.     -..+...|.+++.+.+|++..
T Consensus        67 ----~~~~~-~i---~~~~v~d~~~~~~~~~~~l~f~~~~---~~~~~~~~~v~-----~~~l~~~L~~~~~~~~v~~~~  130 (403)
T PRK07333         67 ----APEAQ-PI---TDMVITDSRTSDPVRPVFLTFEGEV---EPGEPFAHMVE-----NRVLINALRKRAEALGIDLRE  130 (403)
T ss_pred             ----HHHCC-CC---EEEEEEECCCCCCCCCCCCCCCCCC---CCCCCCEEEEE-----HHHHHHHHHHHHHHCCCEEEC
T ss_conf             ----75161-00---2799984655776664200246434---56887368745-----899999999999828998985


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             3156520001344301246898058708995067247415765654
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ++.++++-.++++ |   .+ ...+|+  .+.|+-||-|-|+-..+
T Consensus       131 ~~~v~~i~~~~~~-v---~v-~l~~g~--~i~a~llIgaDG~~S~V  169 (403)
T PRK07333        131 ATSVTDFETRDEG-V---TV-TLADGS--TLEARLLVAADGARSKL  169 (403)
T ss_pred             CCEEEEEEECCCE-E---EE-EECCCC--EEEEEEEEECCCCCHHH
T ss_conf             8857899974980-7---99-978998--99986999834876132


No 150
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90  E-value=2.8e-08  Score=72.72  Aligned_cols=113  Identities=29%  Similarity=0.416  Sum_probs=75.2

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      -|||||||+|.||-.|||-|+++|.+.-|+-.-          .||       +        .-||+---.+        
T Consensus       211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aer----------fGG-------Q--------vldT~~IENf--------  257 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER----------FGG-------Q--------VLDTMGIENF--------  257 (520)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHH----------HCC-------E--------ECCCCCHHHE--------
T ss_conf             834999868863167899998612111001565----------188-------2--------0000033330--------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                                     ++||.                                  ..|..+..+|.+.+++..|++++-..
T Consensus       258 ---------------Isv~~----------------------------------teGpkl~~ale~Hv~~Y~vDimn~qr  288 (520)
T COG3634         258 ---------------ISVPE----------------------------------TEGPKLAAALEAHVKQYDVDVMNLQR  288 (520)
T ss_pred             ---------------ECCCC----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             ---------------05654----------------------------------54668999999987646824553343


Q ss_pred             EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             652000134430124689805870899506724741576
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      +++|..-.  .--|.+-..+.+|.  ..++|+||||||-
T Consensus       289 a~~l~~a~--~~~~l~ev~l~nGa--vLkaktvIlstGA  323 (520)
T COG3634         289 ASKLEPAA--VEGGLIEVELANGA--VLKARTVILATGA  323 (520)
T ss_pred             HHCCEECC--CCCCCEEEEECCCC--EECCCEEEEECCC
T ss_conf             42020157--88860799954783--5113169984276


No 151
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982    Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=98.90  E-value=3.3e-08  Score=72.29  Aligned_cols=119  Identities=29%  Similarity=0.415  Sum_probs=79.5

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      +||||||||.||++|||=+++.+++.+|+|+..+.     .|+|.+.  +  .  +.                    |  
T Consensus         1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G-----~aGGql~--~--T--~~--------------------v--   47 (321)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPG-----IAGGQLT--T--T--TE--------------------V--   47 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCC-----CCCCCCC--C--C--CE--------------------E--
T ss_conf             92899847867888999988746727898357777-----4555333--2--2--06--------------------5--


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEE
Q ss_conf             99988999999998699813279985510014641145678765640798666542667899999987312303113156
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA  177 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~  177 (611)
                                  |                 .+||..               ..-+|.+|+..|.+|+.+.|.++...-.+
T Consensus        48 ------------E-----------------NYPGf~---------------e~i~G~~L~~~M~~Qa~~fG~~~~~G~~v   83 (321)
T TIGR01292        48 ------------E-----------------NYPGFP---------------EGISGPELMEKMKEQAKKFGAEIIYGEEV   83 (321)
T ss_pred             ------------E-----------------CCCCCC---------------CCCCHHHHHHHHHHHHHHCCCCEEECCEE
T ss_conf             ------------1-----------------368688---------------87662889999999998706736626705


Q ss_pred             EEEEECCCCC-CEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             5200013443-0124689805870899506724741576565
Q gi|254781043|r  178 LDLIINSEGC-CVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       178 ~~Li~d~dG~-V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .++-..  ++ -- ---|-+.++  ..|+||+||||||.-.|
T Consensus        84 ~~v~~~--~~~yE-~~~F~~~~~--~~y~a~avIiAtGa~~r  120 (321)
T TIGR01292        84 IRVDKS--DRAYE-SDPFKVKTG--KEYTAKAVIIATGAEAR  120 (321)
T ss_pred             EEEECC--CCCCC-CCEEEEEEC--CEEEEEEEEEECCCHHH
T ss_conf             686337--88436-610389717--56886589991387154


No 152
>PRK10262 thioredoxin reductase; Provisional
Probab=98.90  E-value=9.4e-08  Score=69.30  Aligned_cols=113  Identities=18%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ++|||+|||+|.|||+||+.|++.|.+++|+|+.... |.       +..    .                         
T Consensus         5 k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~G-G~-------l~~----~-------------------------   47 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG-GQ-------LTT----T-------------------------   47 (321)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CC-------CCC----C-------------------------
T ss_conf             0600999997689999999999869967999605968-74-------200----5-------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             99999889999999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                             +                   .+.  .++|.          +     .+.+|..+...|.+++.+.++++..+.
T Consensus        48 -------~-------------------~i~--n~pg~----------~-----~~i~G~~l~~~~~~q~~~~~~~i~~~~   84 (321)
T PRK10262         48 -------T-------------------EVE--NWPGD----------P-----NDLTGPLLMERMHEHATKFETEIIFDH   84 (321)
T ss_pred             -------C-------------------CEE--ECCCC----------C-----CCCCHHHHHHHHHHHHHHHCCEEEECC
T ss_conf             -------6-------------------035--61788----------8-----764779999999999997087489412


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             565200013443012468980587089950672474157656
Q gi|254781043|r  176 FALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                       +..+-.++++    ..+ ....|+   +.||+||||||.-.
T Consensus        85 -v~~i~~~~~~----f~v-~t~~g~---~~a~aViiAtG~~~  117 (321)
T PRK10262         85 -INKVDLQNRP----FRL-TGDSGE---YTCDALIIATGASA  117 (321)
T ss_pred             -CCEEEEECCC----EEE-ECCCCE---EEEEEEEEEECCCC
T ss_conf             -3157740365----199-758988---99989999646865


No 153
>PRK07045 putative monooxygenase; Reviewed
Probab=98.90  E-value=1e-07  Score=69.08  Aligned_cols=157  Identities=16%  Similarity=0.175  Sum_probs=84.4

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ..+||||||+|++||++|+.++++|.+|+|+||.+..+...    +++.  +   .+.+.     +.++. -|+.     
T Consensus         4 ~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~~~~~~----~~~~--l---~p~~~-----~~L~~-lGl~-----   63 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQN----GADL--L---KPSGI-----GVVRA-MGLL-----   63 (388)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CEEE--E---CHHHH-----HHHHH-CCCH-----
T ss_conf             99858999928899999999986799899990899877778----6348--8---99999-----99998-8696-----


Q ss_pred             HHHHHHHHHHHHHHHHCCCCC----CCCCCCCEEEE-CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCC
Q ss_conf             999998899999999869981----32799855100-146411456787656407986665426678999999873-123
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPF----SRNEAGKIYQR-PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNA  169 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f----~r~~~G~~~~~-~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv  169 (611)
                                 +.+...|...    ....+|..... .+...     ....+....+     -..+.+.|.+++.. .++
T Consensus        64 -----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~-----~~~l~~~l~~~~~~~~~v  122 (388)
T PRK07045         64 -----------DDVFAAGGLRRDAMRLYHDKELIASLDYRSA-----SALGYFILIP-----CEQLRRLLLAKLDGLPNV  122 (388)
T ss_pred             -----------HHHHHCCCCEEEEEEEECCCCEEEEECCCCC-----CCCCCEEEEC-----HHHHHHHHHHHHHCCCCE
T ss_conf             -----------8998607851457999508957987445556-----6668389830-----999999999997458981


Q ss_pred             EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             0311315652000134430124689805870899506724741576565
Q gi|254781043|r  170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +++.++.+..+-.+.++.++.+.   ..+|+  .+.++-||-|-|..+.
T Consensus       123 ~~~~~~~v~~v~~~~~~~~~~v~---~~dG~--~~~adlvIGADG~~S~  166 (388)
T PRK07045        123 RLRFETSIERIERDADGTVTSVT---LSDGE--RVAPTVLVGADGARSM  166 (388)
T ss_pred             EEEECCEEEEEEECCCCEEEEEE---ECCCC--EEEEEEEEECCCCCCH
T ss_conf             99979899999984992599999---58997--9974099995688627


No 154
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.89  E-value=1.2e-07  Score=68.55  Aligned_cols=157  Identities=21%  Similarity=0.207  Sum_probs=80.2

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      ++|||+|||+|++|+.+|+.++++|.+|+|+||.+.... ..    .+  ++.   +.+.+ .++. +    |+.     
T Consensus         4 ~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~~d-~R----a~--al~---~~s~~-~L~~-l----Gl~-----   62 (386)
T PRK07494          4 EHTDIAVSGGGPAGLAAAIALASAGASVALVAPAPPYAD-LR----TT--ALL---GPSIR-FLER-L----GVW-----   62 (386)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CC----EE--EEC---HHHHH-HHHH-C----CCH-----
T ss_conf             888689999068999999999878998899957998888-86----79--986---89999-9998-8----987-----


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC----CCCCCEEEE---CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999889999999986998132----799855100---14641145678765640798666542667899999987312
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSR----NEAGKIYQR---PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNN  168 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r----~~~G~~~~~---~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~g  168 (611)
                                 +.+...+.++..    +..|.....   .|....    .+.  ....+.-.  -..+...|.+++.+.+
T Consensus        63 -----------~~l~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~----~~~--~~~g~~i~--~~~l~~~L~~~~~~~~  123 (386)
T PRK07494         63 -----------ARLAPHAAPLQSMRIVDATGRLIRAPEVRFRASE----IGE--DAFGYNIP--NWLLNRALEARAAELP  123 (386)
T ss_pred             -----------HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHH----CCC--CCCEEECC--HHHHHHHHHHHHHHCC
T ss_conf             -----------8887514852269999689851137641035322----477--66321012--6999999999997189


Q ss_pred             CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             303113156520001344301246898058708995067247415765654
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ..++..+.++.+..+++ .|   .+ ...+|+  .++|+-||-|-|.-..+
T Consensus       124 ~~~~~~~~~~~~~~~~~-~v---~v-~~~dg~--~i~a~llIgADG~~S~v  167 (386)
T PRK07494        124 NIDRFDDEAESVRPRGD-EV---TV-TLADGT--TLSARLVVAADGRNSPA  167 (386)
T ss_pred             CEEEECCCEEEEEECCC-EE---EE-EECCCC--EEEEEEEEEECCCCCCC
T ss_conf             97997770689996698-48---99-978996--99986999905888743


No 155
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.88  E-value=4.2e-07  Score=65.03  Aligned_cols=70  Identities=23%  Similarity=0.398  Sum_probs=50.2

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      --|-|||||.|||+||..++..|.+|.|.|+.+..+        |+..   ...|+              |.-..+.+. 
T Consensus       440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~G--------G~L~---yGIP~--------------fRLPk~iv~-  493 (760)
T PRK12778        440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIG--------GVLK---YGIPE--------------FRLPNKIVD-  493 (760)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--------CEEE---ECCCC--------------CCCCHHHHH-
T ss_conf             989998977899999999997799069980588889--------7576---54861--------------108789999-


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9998899999999869981327
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRN  119 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~  119 (611)
                            ..|++|.++||.|..+
T Consensus       494 ------~eI~~l~~lGV~~~~n  509 (760)
T PRK12778        494 ------VEIENLVKMGVTFEKD  509 (760)
T ss_pred             ------HHHHHHHHCCCEEECC
T ss_conf             ------9999998649799899


No 156
>KOG1298 consensus
Probab=98.87  E-value=2.1e-08  Score=73.50  Aligned_cols=189  Identities=21%  Similarity=0.225  Sum_probs=115.4

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      -+..+||||||+|.+|..-|..+++.|.+|.|||+.-.                      .|++.+-+.+..|.++.-.+
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~----------------------EPdRivGEllQPGG~~~L~~   99 (509)
T KOG1298          42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS----------------------EPDRIVGELLQPGGYLALSK   99 (509)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCC----------------------CCHHHHHHHCCCCHHHHHHH
T ss_conf             68754479988862278999998507857999963455----------------------61678877608506689987


Q ss_pred             HHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CC
Q ss_conf             9999999889999999986---9981327998551001464114567876564079866654266789999998731-23
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHY---GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NA  169 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~---Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv  169 (611)
                      +   =.   .++++.++.+   |...-  .+|+-..-+|+-  ..+. ....-|..|.    |+ .++.|.+++... +|
T Consensus       100 L---Gl---~Dcve~IDAQ~v~Gy~if--k~gk~v~~pyP~--~~f~-~d~~GrsFhn----GR-Fvq~lR~ka~slpNV  163 (509)
T KOG1298         100 L---GL---EDCVEGIDAQRVTGYAIF--KDGKEVDLPYPL--KNFP-SDPSGRSFHN----GR-FVQRLRKKAASLPNV  163 (509)
T ss_pred             H---CH---HHHHHCCCCEEEEEEEEE--ECCCEEECCCCC--CCCC-CCCCCCEEEC----CH-HHHHHHHHHHCCCCE
T ss_conf             0---87---877632022375226998--479355335777--6788-8743201223----69-999999987248970


Q ss_pred             EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCC-CEECCHHHHHHHHHCCCCCCCC
Q ss_conf             031131565200013443012468980587089950672474157656543342106-4014448878875136533332
Q gi|254781043|r  170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSA-HTCTGDGAGMVARAGLPLQDME  248 (611)
Q Consensus       170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~-~~~tGdG~~mA~~aGa~l~~mE  248 (611)
                      ++- +-.+.+|+.| +|.|.||.-.+...++ ....|.-+|+|-|=|.++=+ +.++ ...+    ..-+-.|-.+.|-+
T Consensus       164 ~~e-eGtV~sLlee-~gvvkGV~yk~k~gee-~~~~ApLTvVCDGcfSnlRr-sL~~~~v~~----V~S~fVG~vl~N~~  235 (509)
T KOG1298         164 RLE-EGTVKSLLEE-EGVVKGVTYKNKEGEE-VEAFAPLTVVCDGCFSNLRR-SLCDPKVEE----VPSYFVGLVLKNCR  235 (509)
T ss_pred             EEE-EEEHHHHHHC-CCEEEEEEEECCCCCE-EEEECCEEEEECCHHHHHHH-HHCCCCCCC----CCHHEEEEEECCCC
T ss_conf             886-1027878731-6859758986278855-78735558994125688898-744876453----30231244522788


No 157
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.87  E-value=2.2e-07  Score=66.84  Aligned_cols=161  Identities=19%  Similarity=0.259  Sum_probs=79.5

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |-+++||+|||+|++|+.+|+.+++.|.+|+|||+..+....+... ..=..++.   +.| ...++++     ++- +.
T Consensus         1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~-d~R~~al~---~~s-~~~L~~l-----G~~-~~   69 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQLPEEELNELP-DVRVSALS---RAS-EHILRNV-----GAW-QG   69 (405)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCEEEEEC---HHH-HHHHHHC-----CCH-HH
T ss_conf             9998768999915899999999985899789993799863446789-86588878---999-9999987-----985-55


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-
Q ss_conf             999999988999999998699813------2799855100146411456787656407986665426678999999873-
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFS------RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-  166 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~------r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-  166 (611)
                      +.              .....|+.      .+..+.+.   |..      .....+..-+.-.  -..+...|.+++.+ 
T Consensus        70 i~--------------~~~~~p~~~~~v~~~~~~~~i~---~~~------~~~~~~~lg~iv~--~~~l~~~L~~~~~~~  124 (405)
T PRK08850         70 IE--------------ARRAAPYTAMEVWEQDSFARIE---FDA------ESMAQPDLGHIVE--NRVIQLALLEQIQKQ  124 (405)
T ss_pred             HH--------------HHCCCCEEEEEEEECCCCCEEC---CCH------HHCCCCCCCHHHH--HHHHHHHHHHHHHCC
T ss_conf             67--------------6237851258998479874312---474------4417854212464--499999999999738


Q ss_pred             CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             123031131565200013443012468980587089950672474157656
Q gi|254781043|r  167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+|+++..+.+..+-.+++ .+   . ....+|+  .+.|+-||-|-|+-.
T Consensus       125 ~~v~~~~~~~~~~~~~~~~-~~---~-v~~~~g~--~i~a~llVgaDG~~S  168 (405)
T PRK08850        125 DNVTLLMPARCQSIAVGES-EA---W-LTLDNGQ--ALTAKLVVGADGANS  168 (405)
T ss_pred             CCCEEECCCEEEEEEECCC-CE---E-EEECCCC--EEEEEEEEEECCCCH
T ss_conf             9919973753556761797-15---9-9977998--887508999169873


No 158
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.87  E-value=4.5e-07  Score=64.82  Aligned_cols=158  Identities=18%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             31058898996899999999998898299998689885--2104116534251378999999999998998458877999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR--SHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~--g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      |.++|+|||+|.+||+.|+.++.+|.+|+|||+.+...  +... |  |   ++   ...+.     ++++. -|+.   
T Consensus         1 mrt~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~~~~~v~~~~R-A--~---~l---~~~tl-----ell~~-~Gl~---   62 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVLGRIR-A--G---VL---EQGTV-----DLLRE-AGVG---   62 (392)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-E--E---EE---CHHHH-----HHHHH-CCCH---
T ss_conf             99889999977999999999997799889997689977678876-5--3---10---88999-----99998-5988---


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             999999988999999998699813---27998551001464114567876564079866654266789999998731230
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFS---RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAE  170 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~---r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~  170 (611)
                                   +.|.+-|.+..   ..-+|+.....|...    ..+.  +...+  .  -.++.+.|.+...+.|++
T Consensus        63 -------------~rl~~~g~~~~g~~l~~~g~~~rid~~~l----~~g~--~~~~y--~--Q~ev~~~L~~a~~~~g~~  119 (392)
T PRK08243         63 -------------ERMDREGLVHDGIELAFDGRRHRIDLTEL----TGGR--SVTVY--G--QTEVTRDLMAAREAAGGP  119 (392)
T ss_pred             -------------HHHHHCCCCCCCEEEEECCEEEEECCCCC----CCCC--CEEEC--C--HHHHHHHHHHHHHHCCCE
T ss_conf             -------------78974377356439998997766055446----8896--10335--8--189999999999976997


Q ss_pred             EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             31131565200013443012468980587089950672474157656
Q gi|254781043|r  171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ++.++..+.+ .+.++....+..  ..+|+.+.++|+-||=|-|+-+
T Consensus       120 i~~~~~~v~~-~d~~~~~~~V~~--~~dG~~~~l~a~yvVGcDG~~S  163 (392)
T PRK08243        120 IVFEASDVAL-HDFDGDRPYVTY--TKDGETHRIDCDFIAGCDGFHG  163 (392)
T ss_pred             EEEEEEEEEE-EECCCCCEEEEE--ECCCCEEEEEEEEEEECCCCCC
T ss_conf             9990599999-956998259999--4499379999846751688987


No 159
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278   These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason.    Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.87  E-value=5.2e-09  Score=77.51  Aligned_cols=189  Identities=25%  Similarity=0.309  Sum_probs=104.6

Q ss_pred             EEEECEEEECCCHHHHHHHHHHH-HCCC-CEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf             23105889899689999999999-8898-299998689885210411653425137899999999999899845887799
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMA-EKGF-KTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDV   92 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~-e~G~-~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~   92 (611)
                      +.+|||||||+|.=||..|.=+| +.|. +|.||||+-++.||+.--..=| =.+. .-+.|.. +++-.+|-=.|| .+
T Consensus        28 K~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTiv-RSNY-l~p~s~~-~Ye~a~kLweGL-s~  103 (407)
T TIGR01373        28 KPEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIV-RSNY-LYPESAE-LYEHAMKLWEGL-SQ  103 (407)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEE-EEEC-CCCCCHH-HHHHHHHHHHCH-HH
T ss_conf             885467888688606899999886469406899850621688664342146-5410-2645223-788898886120-01


Q ss_pred             HHHH----------HHHHHHHHHHHHHHH-------CCCC--------------C-CCCCCCCEEEEC-CCCCCCCCCCC
Q ss_conf             9999----------999988999999998-------6998--------------1-327998551001-46411456787
Q gi|254781043|r   93 DAIQ----------YLAMEAPQSVYELEH-------YGVP--------------F-SRNEAGKIYQRP-FGGHMQNYGEG  139 (611)
Q Consensus        93 ~lv~----------~~~~~a~~~i~~Le~-------~Gv~--------------f-~r~~~G~~~~~~-~gg~~~~~~~g  139 (611)
                      ||-+          .|| |+..-++-+++       .||.              + +-..|-.+   | +||..+...  
T Consensus       104 dLNYNvM~SqRG~~nL~-H~~~~~~~~~R~v~A~r~~GvDaELl~~~~v~~~~P~ld~s~daRf---Pv~Gg~~QrRg--  177 (407)
T TIGR01373       104 DLNYNVMFSQRGVLNLA-HSTADMDDYARRVNAMRLNGVDAELLSPEQVKRLIPILDFSKDARF---PVVGGLLQRRG--  177 (407)
T ss_pred             HCCHHHHHHHHHHHHHC-CCHHHHHHHCCCEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCCCC---CCCCCCHHCCC--
T ss_conf             20200112133234321-8887876431410011103646320687899961881128888886---30054001378--


Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             65640798666542667899999987312303113156520001344301246898058708995067247415765654
Q gi|254781043|r  140 PPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       140 ~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      . +.|--.+++  |      -.+.+-+.||+|+.+|++|+++..++|+|.||..   .-|   .|.|+.|=+|+=|-   
T Consensus       178 G-taRHDAVAW--G------YARgAd~~GVdiIqncEvTg~~~~~~grv~GV~T---~RG---~IgA~kvgva~AG~---  239 (407)
T TIGR01373       178 G-TARHDAVAW--G------YARGADARGVDIIQNCEVTGFIRRENGRVIGVET---TRG---FIGAKKVGVAVAGN---  239 (407)
T ss_pred             C-CEEEHHHHH--H------HHHHHHHCCCEEEECCCCCCEEEECCCEEEEEEC---CCC---CCCCEEEEEEEECC---
T ss_conf             7-102101222--1------4642300584032223202316506875886544---874---10103788887177---


Q ss_pred             CCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf             3342106401444887887513653
Q gi|254781043|r  220 YFSATSAHTCTGDGAGMVARAGLPL  244 (611)
Q Consensus       220 y~~~t~~~~~tGdG~~mA~~aGa~l  244 (611)
                                   .-.||-.||.+|
T Consensus       240 -------------ss~~a~~AG~rl  251 (407)
T TIGR01373       240 -------------SSVVAELAGFRL  251 (407)
T ss_pred             -------------HHHHHHHCCCCC
T ss_conf             -------------589897637426


No 160
>PRK11445 putative oxidoreductase; Provisional
Probab=98.85  E-value=2.4e-07  Score=66.61  Aligned_cols=157  Identities=24%  Similarity=0.298  Sum_probs=76.9

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--HHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             1058898996899999999998898299998689885210--41165342513789999999999989984588779999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHT--VAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s--~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      .|||+|||+|.||.+||-.+++. .+|+||||....+...  -..+|+|       ++...+. +.   +-+-.+ -+++
T Consensus         1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCGG~I-------~~~a~~~-l~---~~~~~i-p~~~   67 (348)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLL-------APDAQKS-FA---KDGLTL-PKDV   67 (348)
T ss_pred             CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCC-------CHHHHHH-HH---HCCCCC-CHHH
T ss_conf             99799989788999999998268-9889998135656799988786871-------9728999-87---506788-5665


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                      +   ++  +. +     ..+. ..+.+..+.              ...++.+..-++  ..+-..|.+.+ +.+++++.+
T Consensus        68 l---~~--~~-i-----~~~~-~~~~~~~~~--------------~~~~~~yi~~~R--~~fD~~L~~~a-~~~~~~~~~  118 (348)
T PRK11445         68 I---AN--PQ-I-----FAVK-TIDLANSLT--------------RNYQRSYINIDR--HKFDLWLKSLI-PASVEVYHN  118 (348)
T ss_pred             C---CC--CE-E-----EEEE-ECCCCCCCC--------------CCCCCEEEECCH--HHHHHHHHHHH-HHCCCEEEE
T ss_conf             0---15--53-7-----8766-427877522--------------135660760559--99999999988-728738971


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             156520001344301246898058708995067247415765654
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ..+.++..+++| +. ++ + ..+|+...+.||-||=|.|--+.+
T Consensus       119 ~~~~~i~~~~~g-~~-v~-~-~~~g~~~~~~a~~iIGADGanS~V  159 (348)
T PRK11445        119 SLCRKIWREDDG-YH-VI-F-RADGWEQHITARYLVGADGANSMV  159 (348)
T ss_pred             EEEEEEEECCCE-EE-EE-E-EECCEEEEEEECEEEECCCCCCHH
T ss_conf             489999983980-79-99-9-718907898737899898977588


No 161
>PRK07538 hypothetical protein; Provisional
Probab=98.84  E-value=3.3e-07  Score=65.76  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=85.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      ||+|||+|++||++|+.++++|.+|.|+|+.+..+..    +-||+.     .+...+     .+.. -|+         
T Consensus         2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~----G~gI~l-----~p~a~~-----~L~~-lGl---------   57 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPELRPL----GVGINL-----LPHAVR-----ELAE-LGL---------   57 (413)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC----CEEEEE-----CHHHHH-----HHHH-CCC---------
T ss_conf             8999990589999999999789998999369988878----528751-----879999-----9998-789---------


Q ss_pred             HHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHH-CC-CEE
Q ss_conf             9988999999998699813----279985510014641145678765640-7986665426678999999873-12-303
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQR-TCAAADRTGHAILHTLYGQALK-NN-AEF  171 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R-~~~~~d~tG~~i~~~L~~~~~~-~g-v~i  171 (611)
                             .+.|.+.|++..    .+.+|+.......+    ...+..+|. .+|     =..+...|++.+.+ .| ..+
T Consensus        58 -------~~~l~~~g~~~~~~~~~~~~G~~i~~~~~g----~~~g~~~p~~~i~-----R~~L~~~L~~~~~e~lg~~~i  121 (413)
T PRK07538         58 -------LEALDAVGIRTRELVFFNRHGQRIWSEPRG----LAAGYDWPQYSIH-----RGELQMLLLDAVRERLGPDAV  121 (413)
T ss_pred             -------HHHHHHHCCCCCEEEEECCCCCEEEECCCC----CCCCCCCCEEEEC-----HHHHHHHHHHHHHHHCCCCEE
T ss_conf             -------789986277763279996999898733466----4457888525650-----999999999999975699689


Q ss_pred             ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             11315652000134430124689805870899506724741576565
Q gi|254781043|r  172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ..++.++++..++++ |. +...+..++....+.|+-||=|-|.-+.
T Consensus       122 ~~g~~v~~~~~~~~~-v~-~~~~~~~~~~~~~~~adllVGADGi~S~  166 (413)
T PRK07538        122 RTGHRVVGFEQDAGV-TV-VFLGDRAGGDLVSVRADVLIGADGIHSA  166 (413)
T ss_pred             EECCEEEEEEECCCC-EE-EEEECCCCCCCEEEEECEEEECCCCCCH
T ss_conf             967789898874995-29-9997157887239984889988898752


No 162
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.84  E-value=5.7e-08  Score=70.71  Aligned_cols=108  Identities=28%  Similarity=0.285  Sum_probs=67.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      ||+|||+|.|||+||+.+++.|.+|+|+|+..    +..+..+++.....                 ...          
T Consensus         1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~----~~~~~~~~i~~~~~-----------------~~~----------   49 (277)
T pfam07992         1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEG----GTCYNRGCIPKKLL-----------------LEA----------   49 (277)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCEEEECCCCCCCC-----------------CCC----------
T ss_conf             99999976999999999984999799993799----93575577477116-----------------454----------


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEE
Q ss_conf             99889999999986998132799855100146411456787656407986665426678999999873123031131565
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFAL  178 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~  178 (611)
                                                                          .....+.....++..+.+++++.++.++
T Consensus        50 ----------------------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~   77 (277)
T pfam07992        50 ----------------------------------------------------AEVGKLDLRPLEQYKDEGIEVLLGTGVT   77 (277)
T ss_pred             ----------------------------------------------------CCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf             ----------------------------------------------------3314561899999987597999687799


Q ss_pred             EEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             2000134430124689805870899506724741576565
Q gi|254781043|r  179 DLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       179 ~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+-.+  ++.  +   ...+|+  .+.++.||||||...+
T Consensus        78 ~i~~~--~~~--v---~~~~g~--~~~~d~lviAtG~~~~  108 (277)
T pfam07992        78 AIDKA--GKK--V---TLDDGK--ELTYDKLVIATGARPR  108 (277)
T ss_pred             EEECC--CCE--E---EECCCC--EEECCEEEECCCCCCC
T ss_conf             99789--998--9---987893--9985999998799862


No 163
>PRK06996 hypothetical protein; Provisional
Probab=98.84  E-value=2.7e-07  Score=66.29  Aligned_cols=164  Identities=20%  Similarity=0.212  Sum_probs=84.7

Q ss_pred             CCCCEEEEEECEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             344133231058898996899999999998----8982999986898852104116534251378999999999998998
Q gi|254781043|r    9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAE----KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIK   84 (611)
Q Consensus         9 ~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~   84 (611)
                      +.-+....+|||+|||+|..|+..|+.+++    +|.+|.++|+.+......                |+         +
T Consensus         3 ~~~~m~~~d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~----------------d~---------R   57 (397)
T PRK06996          3 TAASMAAPDYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASAN----------------DP---------R   57 (397)
T ss_pred             CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC----------------CC---------C
T ss_conf             7899999998889999279999999999601687896699976898666789----------------99---------3


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CEE--EECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             45887799999999998899999999869981327998--551--00146411456787656407986665426678999
Q gi|254781043|r   85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAG--KIY--QRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTL  160 (611)
Q Consensus        85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G--~~~--~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L  160 (611)
                      +- .+            ++..++.|+++|+ |......  .+.  .+...|+..........+..-+.-.  -..+...|
T Consensus        58 a~-al------------~~~s~~~L~~lG~-w~~~~~~i~~~~v~~~~~~g~~~~~~~~~~~~~lg~iv~--~~~l~~~L  121 (397)
T PRK06996         58 AI-AL------------SHGSRVLLETLGA-WPADATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVR--YGSLVAAL  121 (397)
T ss_pred             EE-EE------------CHHHHHHHHHCCC-CCCCCCCEEEEEEEECCCCCCEECCHHHCCCCCCCCCCC--HHHHHHHH
T ss_conf             99-97------------5789999998799-845687425999940577662112654428852235443--79999999


Q ss_pred             HHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  161 YGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       161 ~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+++.+.++.++..+.+..+..+.++ |. +. .. ..+....++|+-||-|-|+-.
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~~~~-v~-~~-~~-~~~~~~~i~a~llVgaDG~~S  174 (397)
T PRK06996        122 ARAVRGTGVTWLTSTTARAPAQDADG-VT-LA-LD-TPQGARTLRARIAVQAEGGLF  174 (397)
T ss_pred             HHHHHHCCCEEEECCCEEEEEECCCC-EE-EE-EC-CCCCCEEEEECEEEECCCCCH
T ss_conf             99997489879834451457763674-58-99-60-599865998189999599981


No 164
>KOG2311 consensus
Probab=98.82  E-value=1.6e-08  Score=74.25  Aligned_cols=161  Identities=29%  Similarity=0.400  Sum_probs=86.8

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCCCC
Q ss_conf             231058898996899999999998898299998689--88521041165342513789999999999989984-588779
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF--PTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKG-SDWLGD   91 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~--~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~-g~~l~d   91 (611)
                      +-.|||+|||+|-||+-||.+|++-|++.+|+++..  ++.-+|.-+-|||.-  +..-      +--|.+-+ -...||
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigK--g~Lm------rEVDALdGl~~rvcD   97 (679)
T KOG2311          26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGK--GHLM------REVDALDGLCSRVCD   97 (679)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC--CEEE------EEEHHHCCHHHHHHH
T ss_conf             77555799878752048889887418734786325561013445765587665--3024------431200256765411


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHHC--
Q ss_conf             999999999889999999986998132799855100146411456787656--4079866654266789999998731--
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALKN--  167 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~~--  167 (611)
                      +..+.+         .-|-.                         ..|+.+  +|         .+|-+.|+++..+.  
T Consensus        98 ~s~vq~---------k~LNr-------------------------s~GPAVwg~R---------AQiDR~lYkk~MQkei  134 (679)
T KOG2311          98 QSGVQY---------KVLNR-------------------------SKGPAVWGLR---------AQIDRKLYKKNMQKEI  134 (679)
T ss_pred             HHHHHH---------HHHHC-------------------------CCCCCCCCHH---------HHHHHHHHHHHHHHHH
T ss_conf             555568---------77502-------------------------5797223708---------7651999999999875


Q ss_pred             ----CCEEECCCEEEEEEECCCC----CCEEEEEEEECCCEEEEECCCCEEEECCCCC--CCCC-CCCCCCEECCH
Q ss_conf             ----2303113156520001344----3012468980587089950672474157656--5433-42106401444
Q gi|254781043|r  168 ----NAEFFIEYFALDLIINSEG----CCVGVVAWQLETGEIHRFSAKLVVLATGGYG--RAYF-SATSAHTCTGD  232 (611)
Q Consensus       168 ----gv~i~~~~~~~~Li~d~dG----~V~Gav~~~~~~G~~~~i~AkaVILATGG~~--~ly~-~~t~~~~~tGd  232 (611)
                          +.++++ -.+.+||+.+.+    +|.|++.   .+|.  +|.|+.|||.||-|=  .+|- ..+-|.+-.|+
T Consensus       135 ~st~nL~ire-~~V~dliv~~~~~~~~~~~gV~l---~dgt--~v~a~~VilTTGTFL~~~I~iGlk~~pAGRiGe  204 (679)
T KOG2311         135 SSTPNLEIRE-GAVADLIVEDPDDGHCVVSGVVL---VDGT--VVYAESVILTTGTFLRGQINIGLKTHPAGRIGE  204 (679)
T ss_pred             CCCCCCHHHH-HHHHHEEECCCCCCCEEEEEEEE---ECCC--EECCCEEEEEECCCEEEEEEECCCCCCCCCCCC
T ss_conf             2687600122-00133363168887347778997---5572--731434999613212237850431144744467


No 165
>PRK13984 putative oxidoreductase; Provisional
Probab=98.82  E-value=4.4e-07  Score=64.93  Aligned_cols=69  Identities=23%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|-|||||.|||+||..+++.|.+|.|.||.+..+|        +   +....|+              |.-..+.+.  
T Consensus       285 KVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GG--------l---L~yGIP~--------------fRLpk~vv~--  337 (604)
T PRK13984        285 KVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGG--------V---MRYGIPS--------------YRLPDEALD--  337 (604)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCC--------E---EEECCCC--------------CCCCHHHHH--
T ss_conf             899989868999999999986986899745677897--------2---3315872--------------228789999--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             998899999999869981327
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRN  119 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~  119 (611)
                           ..|++|+++||.|..+
T Consensus       338 -----rei~~i~~~GV~f~~n  353 (604)
T PRK13984        338 -----KDIAFIEALGVKIHTN  353 (604)
T ss_pred             -----HHHHHHHHCCCEEECC
T ss_conf             -----9999999729899768


No 166
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.82  E-value=1.5e-08  Score=74.51  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf             1058898996899999999998898--299998689
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF--KTACITKVF   50 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~--~V~lieK~~   50 (611)
                      +.+|+|||+|.||++||.++.+.|.  +|+|+++.+
T Consensus         3 ~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~   38 (400)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (400)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             672999977599999999998069499799998999


No 167
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108   Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor .   This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=98.81  E-value=2.6e-07  Score=66.36  Aligned_cols=311  Identities=20%  Similarity=0.209  Sum_probs=151.9

Q ss_pred             CEEEECCCHHHHHHHHHHH--HCCCCEEEEECCCC-CCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             5889899689999999999--88982999986898-85210411653425137899999999999899845887799999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMA--EKGFKTACITKVFP-TRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~--e~G~~V~lieK~~~-~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      |+||||||.||+.-|++++  +.|++|.+|+-.+. ..++-.|.   +   -    .|+    +.+.        +..++
T Consensus         1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~tyg---~---w----~~d----l~~~--------~hawl   58 (419)
T TIGR01790         1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNNTYG---V---W----DDD----LSDL--------GHAWL   58 (419)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC---C---C----CCC----HHHH--------HHHHH
T ss_conf             97887477578999999997505871898678887677687442---1---2----222----3278--------99999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEECC
Q ss_conf             999998899999999869981327998551001464114567876564079866654266789999998731-2303113
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIE  174 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~~  174 (611)
                      ..++++             .|.   ++ +..+ |.  ......+..|.+.      +-..+...|.+++.+. |+..+..
T Consensus        59 ~~l~~~-------------~W~---~~-~~y~-~~--~~~~~L~~~Y~~~------~~~~L~~~l~~~~~~~sG~~~~~~  112 (419)
T TIGR01790        59 ADLVEH-------------RWS---DA-YEYR-FP--EEPIKLGRAYGSV------DRAQLHEELLQKCPEGSGVLWLEA  112 (419)
T ss_pred             HHHHCC-------------CCC---CE-EEEC-CC--CCCHHCCCCCEEE------CHHHHHHHHHHHHHCCCCEEEEHH
T ss_conf             988416-------------389---80-6883-87--3430105665000------158999999986200376133013


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC-CCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             1565200013443012468980587089950672474157656-543342106401444887887513653333222328
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG-RAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH  253 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~-~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfh  253 (611)
                       .+..+..+   .+..-.+. ...|+  +|+|+.||-|||.-. .++.+...+ .  .-|+-.||-.=++|.+      +
T Consensus       113 -ka~~~~~~---~~~~~~v~-~~~g~--~i~Ar~V~Da~G~~~G~l~~~~~~~-~--~~g~Q~ayG~~~rl~~------~  176 (419)
T TIGR01790       113 -KAIKVEAD---AVSLSLVE-CAGGQ--RIQARLVIDARGFKPGKLVQYEKAS-L--AVGYQAAYGVEVRLSE------P  176 (419)
T ss_pred             -HHHHHHHH---HCCCCEEE-CCCCE--EEEEEEEEECCCCCCCCEECCCCCC-C--CCEEEEEEEEEEEEEC------C
T ss_conf             -56666544---05511144-28973--7840078832577765101125667-6--4212131327788724------7


Q ss_pred             CCCCCCCEEECCCCCCCCCEEEE---ECCCCC-----CCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             88442201430456655780898---326861-----2554076510047520111568899881788888887468861
Q gi|254781043|r  254 PTGIYGAGCLITEGARGEGGYLV---NSKGER-----FMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYL  325 (611)
Q Consensus       254 Pt~~~~~~~l~~~~~rg~G~~l~---n~~Ger-----f~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~  325 (611)
                      |.++..+ ++|-.-+    ..+-   |.++.|     |+     ..+.|.+-++     +.|           +..|.|-
T Consensus       177 P~~~~~~-V~MD~r~----~~~~~~~~l~~~~sripTFl-----YampL~~~~~-----f~E-----------eT~l~~~  230 (419)
T TIGR01790       177 PHGPSSM-VIMDYRV----DQLKDAPELKGYRSRIPTFL-----YAMPLSSDRV-----FIE-----------ETSLAAR  230 (419)
T ss_pred             CCCCCCC-EEECCCH----HHHCCCCCCCCCCCCCCCEE-----EECCCCCCEE-----EEE-----------EEEECCC
T ss_conf             8799986-5831152----52357853235566676156-----6305899647-----888-----------5100268


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r  326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH  405 (611)
Q Consensus       326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h  405 (611)
                      -.++.+.|++|+-   ..... .|+.+..-       .|.=.|=|++...+-   ..+-..+-.+||+-+.|-+| +=+|
T Consensus       231 p~l~~~~L~~rl~---~rl~~-~G~~~~~i-------~~eE~~~lP~~~~~p---~sa~~~~q~~PGv~~~G~aA-g~vH  295 (419)
T TIGR01790       231 PALPRDRLKQRLL---ARLAA-QGWQVKEI-------EEEEQGLLPVNLPLP---SSAYVLEQRIPGVVAFGAAA-GMVH  295 (419)
T ss_pred             CCCCHHHHHHHHH---HHHHH-CCCCCCCH-------HHCCHHHCCCCCCCC---CCCCCCCCCCCCHHHCCCCC-CCCC
T ss_conf             9989899999999---99984-68823400-------320011114355788---52220689987033100133-4557


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             64304764322222232156775566542026
Q gi|254781043|r  406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSS  437 (611)
Q Consensus       406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~  437 (611)
                         ...|.++..++--.-..+...|+....+.
T Consensus       296 ---P~TGY~v~~al~~Ap~~A~~~A~~L~~~~  324 (419)
T TIGR01790       296 ---PATGYSVARALSEAPKLAAAIAQALALSS  324 (419)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ---75111489999987888999997413333


No 168
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.80  E-value=3.5e-07  Score=65.52  Aligned_cols=151  Identities=26%  Similarity=0.345  Sum_probs=77.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEE-ECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             1058898996899999999998898299998689885210411653425-137899999999999899845887799999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAA-SLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a-~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      +|||+|||+|++|+.+|+.++++|.+|+|+|+..+..-... ..-++.+ ++   .                        
T Consensus         3 ~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~p~~~~~~-~~~~~R~~al---~------------------------   54 (384)
T PRK08849          3 KYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFEPKAFEAS-QPMDIRVSAI---S------------------------   54 (384)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCCCEEEEEE---C------------------------
T ss_conf             18999999249999999999957995999968998766666-7877056786---7------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCC----------CCCCCC---CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             9999988999999998699----------813279---985510014641145678765640798666542667899999
Q gi|254781043|r   96 QYLAMEAPQSVYELEHYGV----------PFSRNE---AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYG  162 (611)
Q Consensus        96 ~~~~~~a~~~i~~Le~~Gv----------~f~r~~---~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~  162 (611)
                             +..++.|+++|+          |+.+-+   .+.. ...|..      .....++.-+.-.  -..+...|.+
T Consensus        55 -------~~s~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~~-~~~f~~------~~~~~~~lg~iv~--~~~l~~~L~~  118 (384)
T PRK08849         55 -------QNSVDLLESLGAWSSIVAMRVCPYKRLETWEHPEC-RTRFHS------DELNLDQLGYIVE--NRLIQLGLWQ  118 (384)
T ss_pred             -------HHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCC-CCCCCH------HHCCCCCCCCHHH--HHHHHHHHHH
T ss_conf             -------99999999879864687614786002553017764-412485------3438630000343--7999999999


Q ss_pred             HHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             9873-1230311315652000134430124689805870899506724741576565
Q gi|254781043|r  163 QALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       163 ~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ++.+ .+|+++....+.++-.++++ +    .....+|+  .++|+-||-|-|.-..
T Consensus       119 ~~~~~~~i~~~~~~~v~~~~~~~~~-~----~v~l~~g~--~i~a~llIgADG~~S~  168 (384)
T PRK08849        119 QFAQYPNLTLLCPEKLKDLEFSAEG-N----RVTLESGA--EIEAKWVIGADGANSQ  168 (384)
T ss_pred             HHHHCCCEEEECCCEEEEEEECCCE-E----EEEECCCC--EEEEEEEEEEECCCHH
T ss_conf             9984899199838778898853881-4----99978999--9985479992078646


No 169
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.78  E-value=8.5e-08  Score=69.58  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             10588989968999999999988982999986898
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      .|||+|||+|.||..+|.++  .|++|+||||..+
T Consensus         1 ~YDviVIG~Gpgg~~~a~~~--aG~kValVE~~~~   33 (453)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTF   33 (453)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCCC
T ss_conf             97789989888999999998--2992999978997


No 170
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.77  E-value=6e-07  Score=64.01  Aligned_cols=54  Identities=20%  Similarity=0.191  Sum_probs=42.2

Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCC-EEEEECCCCEEEECCCCCC
Q ss_conf             873123031131565200013443012468980587-0899506724741576565
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG-EIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G-~~~~i~AkaVILATGG~~~  218 (611)
                      ..+.+.++..++.+.+|+.+. ++++|+.......+ .-+.+.++-|||++|+.+.
T Consensus       213 ~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S  267 (542)
T COG2303         213 LKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS  267 (542)
T ss_pred             HHCCCCEEECCCEEEEEEEEC-CEEEEEEEEECCCCCEEEEECCCEEEECCCCCCC
T ss_conf             508983896378899999989-8689999996898633688517879985676379


No 171
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338   This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=98.77  E-value=3e-07  Score=65.96  Aligned_cols=146  Identities=23%  Similarity=0.323  Sum_probs=85.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      .||.||||+|..||.||-+||+.|++|+|++-..|..-++.|.=||..+-.+=. |                    +...
T Consensus         2 dyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCi-P--------------------KKLM   60 (513)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCI-P--------------------KKLM   60 (513)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCC-C--------------------CHHH
T ss_conf             642799858973468999998609918999633569888214767535750554-8--------------------3567


Q ss_pred             HHHHHHHHHHH-HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-----------
Q ss_conf             99998899999-999869981327998551001464114567876564079866654266789999998-----------
Q gi|254781043|r   97 YLAMEAPQSVY-ELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-----------  164 (611)
Q Consensus        97 ~~~~~a~~~i~-~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-----------  164 (611)
                      -.|-..++.++ .-..+|..|.-++.=+                |.|.|           |..+..+++           
T Consensus        61 HqAa~~G~~lklds~~YGWn~~~~ek~K----------------HDW~~-----------l~~~Vq~hi~slNw~Yrv~L  113 (513)
T TIGR01438        61 HQAALLGKALKLDSKKYGWNVEDQEKVK----------------HDWEK-----------LSKAVQDHIKSLNWSYRVAL  113 (513)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCC----------------CCHHH-----------HHHHHHHHHHHCCHHEEEEH
T ss_conf             8888876887553565188853664322----------------23789-----------99988645554003200001


Q ss_pred             HHCCCEEECCCEEEEEEECCCCCCEEEEEEEE-CCCEEEEECCCCEEEECCC
Q ss_conf             73123031131565200013443012468980-5870899506724741576
Q gi|254781043|r  165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQL-ETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~-~~G~~~~i~AkaVILATGG  215 (611)
                      ++..|+.++-.  -+ ++|.+ +++ +.+.+. ..++-..+.|+.|++|||=
T Consensus       114 r~kKv~Y~Nay--ae-fvdk~-ki~-i~~t~kGd~~ke~~~sa~~~lIaTG~  160 (513)
T TIGR01438       114 REKKVKYINAY--AE-FVDKD-KIV-IKATDKGDKKKEEILSAKRVLIATGL  160 (513)
T ss_pred             HCCCCEEEEEE--EE-EECCC-EEE-EEEEECCCCCCCEEEECCEEEEECCC
T ss_conf             01540266300--24-42784-689-99860678763204503636980478


No 172
>PRK06847 hypothetical protein; Provisional
Probab=98.74  E-value=6.3e-07  Score=63.89  Aligned_cols=155  Identities=18%  Similarity=0.190  Sum_probs=84.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      .|+|||+|++||++|+.++++|.+|+|+|+.+..+...    .||.  +   .+.+.     ++++. -++         
T Consensus         6 kV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~g----~gi~--l---~~~~~-----~~L~~-lGl---------   61 (375)
T PRK06847          6 KVLIVGGGIGGMSAAIALRKAGISVDLVEIDPEWRPYG----AGIT--L---QGNTL-----RALKE-LGV---------   61 (375)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----EEEE--E---CHHHH-----HHHHH-CCC---------
T ss_conf             79999966899999999996799999990899988886----0898--8---98999-----99998-799---------


Q ss_pred             HHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             9988999999998699813----279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                             .+.+.+.|.++.    ++.+|....+...    ....+..++.....   .-..+.+.|.+.+.+.++++..+
T Consensus        62 -------~~~i~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~~~~~i---~r~~L~~~L~~~~~~~~~~v~~~  127 (375)
T PRK06847         62 -------LDECLEHGFGFDGVDIFDPAGHLLAEVPT----PRVAGDDVPGGGGI---MRPTLARILADAARASGVDVRLG  127 (375)
T ss_pred             -------HHHHHHHCCCCCEEEEEECCCCEEEEECC----HHHCCCCCCCEEEE---EHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             -------58999607885229999689988998343----12035667721277---09999999999898469979966


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             15652000134430124689805870899506724741576565
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +.++++-.+++ .|   .+ ...+|+  .+.|+-||-|-|.-+.
T Consensus       128 ~~v~~i~~~~~-~v---~v-~~~dG~--~~~adllIGADG~~S~  164 (375)
T PRK06847        128 TTVTAIEQDDD-GV---DV-TFTDGT--TGRYDLVVGADGVYSK  164 (375)
T ss_pred             CEEEEEEECCC-EE---EE-EECCCC--EEEEEEEEECCCCCCH
T ss_conf             58978666498-58---99-985898--8998799985787627


No 173
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.74  E-value=1.3e-06  Score=61.91  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=81.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             105889899689999999999889---82999986898852104116534251378999999999998998458877999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G---~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      +|||+|||+|++|+++|+.+++.|   .+|.|+|+.......... ..+=+.++   .+.|.+. +++ +    |+    
T Consensus         3 ~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~-~d~Ra~al---~~~s~~~-L~~-l----Gl----   68 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPG-FDARAIAL---AAGTCQQ-LAR-L----GV----   68 (395)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-CCCEEEEE---CHHHHHH-HHH-C----CC----
T ss_conf             189899993899999999999618899749999378854456888-77447888---8999999-998-7----99----


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CC
Q ss_conf             99999998899999999869981327---998551001464114567876564079866654266789999998731-23
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRN---EAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NA  169 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~---~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv  169 (611)
                                  .+.+...+.|+.+-   +.|......+...      ....+..-|.-.  -..+...|.+.+.+. +|
T Consensus        69 ------------~~~l~~~~~pi~~i~v~d~~~~~~~~~~~~------~~~~~~lg~~v~--~~~l~~~L~~~l~~~~~v  128 (395)
T PRK05732         69 ------------WQALADCATPIRHIHVSDRGHAGFVRLDAE------DYGVDALGYVVE--LADVGQRLFALLDKAPGV  128 (395)
T ss_pred             ------------HHHHHHHCCCCEEEEEEECCCCCCEECCHH------HCCCCCCCCEEE--HHHHHHHHHHHHHCCCCE
T ss_conf             ------------288786276542899840686772105633------238765654323--699999999988408996


Q ss_pred             EEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             03113156520001344301246898058708995067247415765654
Q gi|254781043|r  170 EFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       170 ~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      +++..+.++++..+.+ .|.   + ...+|+  .+.|+-||-|-|.-..+
T Consensus       129 ~~~~~~~v~~i~~~~~-~v~---v-~l~~g~--~i~a~lvVgADG~~S~v  171 (395)
T PRK05732        129 TLHCPARVANVERTQD-GVR---V-TLDDGE--TLTARLLVAADGTHSAL  171 (395)
T ss_pred             EEECCCEEEEEEECCC-CEE---E-EECCCC--EEEECEEEEECCCCHHH
T ss_conf             9976988999998289-279---9-987998--99837999928996254


No 174
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.74  E-value=2.4e-07  Score=66.68  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             310588989968999999999988982999986898
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      ++|||+|||+|.+|..+|.+++  |.+|+||||..+
T Consensus         1 k~YDviVIGaGpgG~~~a~~~a--g~kValvEk~~~   34 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDPRFA--DKRIAIVEKGTF   34 (452)
T ss_pred             CCCCEEEECCCHHHHHHHHHHC--CCEEEEEECCCC
T ss_conf             9476899998689999999982--990999978992


No 175
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=98.73  E-value=4.9e-07  Score=64.59  Aligned_cols=69  Identities=29%  Similarity=0.458  Sum_probs=50.2

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      ..-|-|||+|.|||++|-+.|+.|.+|.|.|-.+-.+        |   ++.+..|+              +.-+.+.+.
T Consensus       142 ~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPG--------G---V~~YGIPe--------------fRLpKei~~  196 (462)
T TIGR01316       142 KKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPG--------G---VLAYGIPE--------------FRLPKEIVE  196 (462)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCC--------C---EEEECCCC--------------CCCCHHHHH
T ss_conf             8779998468214688999974798699997148998--------5---67536888--------------548757889


Q ss_pred             HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999988999999998699813
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFS  117 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~  117 (611)
                             ..|+.|+.+||.|-
T Consensus       197 -------~E~k~LkklGv~fr  210 (462)
T TIGR01316       197 -------TEVKKLKKLGVKFR  210 (462)
T ss_pred             -------HHHHHHHHCCEEEE
T ss_conf             -------88887632663799


No 176
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971   This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=98.72  E-value=4.9e-07  Score=64.59  Aligned_cols=151  Identities=25%  Similarity=0.339  Sum_probs=88.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             5889899689999999999889-----82999986898852104116534251378999999999998998458877999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      ||+|||||++|++.|++++..+     ++|+|||..+...........++         |.                  .
T Consensus         1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~---------D~------------------R   53 (445)
T TIGR01988         1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGF---------DN------------------R   53 (445)
T ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC---------CC------------------C
T ss_conf             96888473889999999841863124731799605211442211258765---------52------------------2


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC-----------------CCCCC------CEEEECCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             999999988999999998699813-----------------27998------5510014641145678765640798666
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFS-----------------RNEAG------KIYQRPFGGHMQNYGEGPPVQRTCAAAD  150 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~-----------------r~~~G------~~~~~~~gg~~~~~~~g~~~~R~~~~~d  150 (611)
                       +..   =++..+..|+++|| |+                 ....|      .+.+..   ...  . + +.+-.-|.-.
T Consensus        54 -~~A---l~~~S~~~L~~lG~-W~~~~~~~~~p~~~~~V~D~~~~g~~~~P~~~~F~~---~~~--~-~-~~~~LG~~ve  121 (445)
T TIGR01988        54 -VSA---LSAASIRLLEKLGV-WDKIEPDRAQPIRDIHVSDGGSFGRAPHPAALHFDA---DEV--G-G-PAEALGYVVE  121 (445)
T ss_pred             -EEE---HHHHHHHHHHHCCC-CHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECH---HHC--C-C-CCCCCCEEEC
T ss_conf             -010---10799999986796-445201212632048887267888888863687443---441--7-8-8011236711


Q ss_pred             CCCHHHHHHHHHHHHHCC---CEEECCCEEEEEEEC-----CCCCCEEEEEEEECCCEEEE---ECCCCEEEECCCCC
Q ss_conf             542667899999987312---303113156520001-----34430124689805870899---50672474157656
Q gi|254781043|r  151 RTGHAILHTLYGQALKNN---AEFFIEYFALDLIIN-----SEGCCVGVVAWQLETGEIHR---FSAKLVVLATGGYG  217 (611)
Q Consensus       151 ~tG~~i~~~L~~~~~~~g---v~i~~~~~~~~Li~d-----~dG~V~Gav~~~~~~G~~~~---i~AkaVILATGG~~  217 (611)
                        =..|.++|++++.+..   |+++....+..+..+     .+ .    +.+-+.+|+  +   +.|+=||-|-|.-.
T Consensus       122 --n~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----v~~~L~~G~--~~~~l~a~LlvgADG~~S  190 (445)
T TIGR01988       122 --NRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSKNDSD-E----VELTLSDGR--QKLLLRARLLVGADGANS  190 (445)
T ss_pred             --HHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCC-C----EEEEECCCC--EEEEEEECEEEEECCCCH
T ss_conf             --88999999999996689647751672147740367756886-0----799970894--767898532787358652


No 177
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.70  E-value=2.7e-08  Score=72.80  Aligned_cols=42  Identities=26%  Similarity=0.436  Sum_probs=36.1

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
Q ss_conf             105889899689999999999889829999868988521041
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVA   58 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~   58 (611)
                      +|||+|||+|.||+.||+.|++.|.+|+||||....-|+++.
T Consensus         3 ~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCl   44 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf             789899997889999999999789929999758998773245


No 178
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.70  E-value=2.4e-08  Score=73.16  Aligned_cols=44  Identities=27%  Similarity=0.374  Sum_probs=37.0

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC
Q ss_conf             31058898996899999999998898299998689885210411
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA   59 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A   59 (611)
                      ++|||+|||+|.||+.||+.|++.|.+|+||||....-|+++..
T Consensus         2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n   45 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCIN   45 (438)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEE
T ss_conf             95587999978899999999997889499994699876855477


No 179
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.69  E-value=1.2e-07  Score=68.50  Aligned_cols=64  Identities=25%  Similarity=0.256  Sum_probs=57.1

Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             26678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ...+.-++.+.+.+.|+++++++.|++++.+ +|+|.||.+.|..+|+...|+||.||-|||-++
T Consensus       127 p~rl~~a~a~~A~~~Ga~i~~~~~V~~i~~~-~g~v~gv~v~d~~tg~~~~i~ak~VVNAaG~wa  190 (516)
T TIGR03377       127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             HHHHHHHHHHHHHHCCHHHHCCCEEEEEEEE-CCEEEEEEEEECCCCCEEEEEEEEEEECCCCCH
T ss_conf             7999999999999736564407368899988-999999999986889789999538997677356


No 180
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.69  E-value=2.7e-08  Score=72.81  Aligned_cols=50  Identities=12%  Similarity=0.006  Sum_probs=34.7

Q ss_pred             HHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+.+|+++.++.++++-.+  .+.  +...+..+++...+.-...|||||.-..
T Consensus        69 ~~~~I~v~~~~~v~~Id~~--~k~--v~~~~~~~~~~~e~~YDkLviATGs~p~  118 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDE--RQT--VTVLNRKTNEQFEESYDKLILSPGASAN  118 (438)
T ss_pred             HHCCCEEEECCEEEEECCC--CCE--EEEECCCCCCEEECCCCEEEEECCCCCC
T ss_conf             8779799927689998066--678--9995066674232134589996798887


No 181
>KOG1335 consensus
Probab=98.69  E-value=5.4e-07  Score=64.32  Aligned_cols=155  Identities=25%  Similarity=0.327  Sum_probs=83.3

Q ss_pred             CCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHH----HHHHHHH
Q ss_conf             534413323105889899689999999999889829999868988521041165342513789999999----9999899
Q gi|254781043|r    8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ----WHLYDTI   83 (611)
Q Consensus         8 ~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~----~~~~Dt~   83 (611)
                      +..|...-.+|||+|||+|..|..|||.|++.|++.++|||-...+ +|+.--|-|        | |..    .|++..+
T Consensus        30 ~r~fa~~~~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG-GTcLnvGcI--------P-SKALL~nSh~yh~~   99 (506)
T KOG1335          30 KRSFASSANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG-GTCLNVGCI--------P-SKALLNNSHLYHEA   99 (506)
T ss_pred             HHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCC-CEEEECCCC--------C-CHHHHHHHHHHHHH
T ss_conf             5565324666788998778725899999987154168873157536-545643633--------5-38876333789988


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             84588779999999999889999999986998132799855100146411456787656407986665426678999999
Q gi|254781043|r   84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQ  163 (611)
Q Consensus        84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~  163 (611)
                                      ++     +.+++.|...+   .-++.+..+-.                +.+..-++|...+...
T Consensus       100 ----------------q~-----~~~~~rGi~vs---~~~~dl~~~~~----------------~k~n~vk~Lt~gi~~l  139 (506)
T KOG1335         100 ----------------QH-----EDFASRGIDVS---SVSLDLQAMMK----------------AKDNAVKQLTGGIENL  139 (506)
T ss_pred             ----------------HH-----HHHHHCCCCCC---CEECCHHHHHH----------------HHHHHHHHHHHHHHHH
T ss_conf             ----------------76-----68986093113---20047899998----------------7777899976689988


Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf             873123031131565200013443012468980587089950672474157656543
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY  220 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly  220 (611)
                      ..+.+|+++..+-.   +++. .+|.    ....+|+...|.||.+|+|||.--.-|
T Consensus       140 fkknkVt~~kG~gs---~~~p-~~V~----v~k~dg~~~ii~aKnIiiATGSeV~~~  188 (506)
T KOG1335         140 FKKNKVTYVKGFGS---FLDP-NKVS----VKKIDGEDQIIKAKNIIIATGSEVTPF  188 (506)
T ss_pred             HHHCCEEEEEEEEE---ECCC-CEEE----EECCCCCCEEEEEEEEEEECCCCCCCC
T ss_conf             76348389951376---5387-4688----853589733786316999617756778


No 182
>PRK08948 consensus
Probab=98.69  E-value=1.4e-06  Score=61.72  Aligned_cols=143  Identities=24%  Similarity=0.323  Sum_probs=78.4

Q ss_pred             ECEEEECCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             058898996899999999998---89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAE---KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e---~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      |||+|||+|++|++.|+.+++   .+.+|.|||+..+......    +         .|+-         + -.+     
T Consensus         1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p----~---------~d~R---------a-~al-----   52 (392)
T PRK08948          1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHP----G---------FDAR---------A-IAL-----   52 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC----C---------CCCE---------E-EEE-----
T ss_conf             9499999589999999999861679984999827887544578----8---------8843---------4-575-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCC---------CCC------CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-----H
Q ss_conf             99999988999999998699---------813------279985510014641145678765640798666542-----6
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGV---------PFS------RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-----H  154 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv---------~f~------r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-----~  154 (611)
                             ++..++.|+++|+         |+.      +...|.....   .      ..       +..+..|     .
T Consensus        53 -------~~~s~~~L~~lGvw~~l~~~~~pi~~i~v~d~~~~~~~~~~---~------~~-------~~~~~lg~iv~~~  109 (392)
T PRK08948         53 -------AAGTCQQLARIGVWSALADCATAITHVHVSDRGHAGFVTLA---A------ED-------YGVAALGYVVELH  109 (392)
T ss_pred             -------CHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCEEECC---H------HH-------CCCCCCHHHHHHH
T ss_conf             -------69999999987994777850663007898407877625437---6------66-------0885311278799


Q ss_pred             HHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             678999999873-1230311315652000134430124689805870899506724741576565
Q gi|254781043|r  155 AILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       155 ~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+...|.+.+.+ .+|+++..+.++++-.+++ .|.   + ...+|+  .+.|+-||-|-|.-..
T Consensus       110 ~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~-~v~---v-~l~~g~--~~~a~llVgaDG~~S~  167 (392)
T PRK08948        110 DVGQRLFALLRKAPGVTLHCPARVANVARTQE-SVT---V-TLDNGE--TLQGKLLVAADGSHSA  167 (392)
T ss_pred             HHHHHHHHHHHHCCCCEEECCCEEEEEEECCC-CEE---E-EECCCC--EEEECEEEEECCCCHH
T ss_conf             99999999997589987855876899885588-279---9-978998--9983789991899737


No 183
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.68  E-value=1.2e-07  Score=68.53  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=34.0

Q ss_pred             CEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEE--ECCCC
Q ss_conf             13323105889899689999999999889829999--86898
Q gi|254781043|r   12 TYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACI--TKVFP   51 (611)
Q Consensus        12 ~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~li--eK~~~   51 (611)
                      .+...||||+|||+|..|..|||+|+|.|+||+|+  +|..+
T Consensus       118 ~~~~~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~l  159 (673)
T PTZ00153        118 NINAEEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCI  159 (673)
T ss_pred             CCCHHHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             898435798999987628999999998498699993687874


No 184
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.68  E-value=2.6e-06  Score=59.85  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=44.1

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             2342157715853778885332276034021220335664304764322222232156775566542026
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS  437 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~  437 (611)
                      -||..+.||. +..+.++++|++||+||+|++. .        |...+..++..||.|+.++-.|+.+..
T Consensus       445 ~gl~~~~~G~-i~vd~~t~~Ts~~gVFAgGD~v-~--------Gp~tvV~AIa~Gr~AA~~Id~yL~G~~  504 (652)
T PRK12814        445 AGIGTSRNGT-VKVDPETLQTSVAGVFAGGDCV-T--------GADIAINAVEQGKRAAHAIDLFLNGKP  504 (652)
T ss_pred             CCCCCCCCCC-EEECCCCCCCCCCCEEECCCCC-C--------CCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             5863668998-8858888743999999898887-6--------844999999999999999999858999


No 185
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.64  E-value=3.6e-06  Score=58.94  Aligned_cols=63  Identities=21%  Similarity=0.352  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             0123421577158537788853322760340212203356643047643222222321567755665420265
Q gi|254781043|r  366 NMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP  438 (611)
Q Consensus       366 ~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~  438 (611)
                      +.-|+.++.||-+ ..+.++.+|++||.||+|++.. |        +..+..++-.||.|+++++.|++....
T Consensus       695 ~~pgL~~~kwGtI-~vDe~t~~Ts~pgVFAGGDiVt-G--------aaTVI~AmGaGrrAArsId~yLR~~~~  757 (993)
T PRK12775        695 ATPGLALNKWGNI-AADDDTQSTNMPGVFAGGDIVT-G--------GATVILAMSAGRRAAKSIAAWLRLNKK  757 (993)
T ss_pred             CCCCCEECCCCCE-EECCCCCCCCCCCEEECCCCCC-C--------HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             6888222587708-9898877668888763656125-5--------769999987089999999999965986


No 186
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.55  E-value=3.6e-06  Score=58.95  Aligned_cols=156  Identities=13%  Similarity=0.176  Sum_probs=77.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      .||+|||+|++|+.+|+.++++|.+|.|+|+.+...-... ...-. .++.   +-|.     +.++. -++ -+     
T Consensus         2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~~~~~~~~-~d~R~-~als---~~s~-----~~L~~-lgi-w~-----   64 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFF-KDIRT-TALT---PHSK-----NFLFS-IDI-WE-----   64 (374)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCCE-EEEC---HHHH-----HHHHH-CCC-CH-----
T ss_conf             6299999669999999999857996999978997886657-99634-6746---9899-----99998-698-48-----


Q ss_pred             HHHHHHHHHHHHHHCCCCCCC----CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf             999889999999986998132----799855100146411456787656407986665426678999999873-123031
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSR----NEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFF  172 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r----~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~  172 (611)
                                .++.+..|+..    +..+.... .+    ..  ..  ..-.-|.-.  -..+...|.+++.+ ..|+++
T Consensus        65 ----------~l~~~~~~~~~i~v~d~~~~~~~-~~----~~--~~--~~~lgyii~--~~~l~~~L~~~~~~~~~i~~~  123 (374)
T PRK06617         65 ----------ELEKFVAEMQDVYVVDNKASEIL-DL----RN--DA--DAVLGYVVK--NSDFKKILLSKITNNPLITLI  123 (374)
T ss_pred             ----------HHHHHHHCCEEEEEECCCCCCEE-EC----CC--CC--CCCCEEEEC--CHHHHHHHHHHHHCCCCCEEE
T ss_conf             ----------67886423189999758988536-42----45--67--654346521--389999999999649994897


Q ss_pred             CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             13156520001344301246898058708995067247415765654
Q gi|254781043|r  173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      .+..+.+++.++ +..  .+.   .+++  .+.|+-+|.|.|.-..+
T Consensus       124 ~~~~~~~~~~~~-~~~--~~~---~~~~--~i~~~llIgaDG~~S~v  162 (374)
T PRK06617        124 DNNQYQEVISHN-DYS--IIK---FDDK--QIKCNLLIICDGANSKV  162 (374)
T ss_pred             CCCCEEEEECCC-CCE--EEE---CCCC--EEEEEEEEEECCCCHHH
T ss_conf             575114665278-826--996---3896--78535899957985166


No 187
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.54  E-value=3.3e-06  Score=59.17  Aligned_cols=317  Identities=21%  Similarity=0.263  Sum_probs=154.0

Q ss_pred             CCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf             20005344133231058898996899999999998898299998689885210411653425137899999999999899
Q gi|254781043|r    4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTI   83 (611)
Q Consensus         4 ~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~   83 (611)
                      .+||+.+.+.-+   =|-|||+|.|||.||=-+.+.|.+|+|.+.-+-.+|        +   |.-..| |         
T Consensus       133 rPD~S~V~~~g~---rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGG--------L---LtFGIP-s---------  188 (480)
T TIGR01318       133 RPDLSHVKPTGK---RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG--------L---LTFGIP-S---------  188 (480)
T ss_pred             CCCCCCCCCCCC---EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCC--------C---CCCCCC-C---------
T ss_conf             898877300782---789977886025799987517855999747703076--------0---136888-5---------


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CC----------EEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             84588779999999999889999999986998132799-85----------51001464114567876564079866654
Q gi|254781043|r   84 KGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEA-GK----------IYQRPFGGHMQNYGEGPPVQRTCAAADRT  152 (611)
Q Consensus        84 ~~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~-G~----------~~~~~~gg~~~~~~~g~~~~R~~~~~d~t  152 (611)
                          |.-|+.++.       .+=+-|..||+.|..+-. |+          |.. -|-|.-.+...-...|    ..|. 
T Consensus       189 ----FKLdK~V~~-------~Rr~if~~MGi~F~Ln~EvGrD~~l~~LLe~YDA-VFlGvGTY~~~~ggLP----~eDa-  251 (480)
T TIGR01318       189 ----FKLDKAVLS-------RRREIFTAMGIEFKLNTEVGRDISLDDLLEDYDA-VFLGVGTYRSMRGGLP----GEDA-  251 (480)
T ss_pred             ----HHHHHHHHH-------HHHHHHHHCCCEEECCCEEECCCCHHHHHHHCCE-EEEECCCCCCCCCCCC----CCCC-
T ss_conf             ----110278999-------9999997589278658165032555444311484-8961143343128778----8774-


Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCH
Q ss_conf             26678999999873123031131565200013443012468980587089950672474157656543342106401444
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGD  232 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGd  232 (611)
                       ..+.++|- -+.+       +|.-+-=+ ++-|+-+  .+++ .+-.+.-+.-|.||+==||           + -+=|
T Consensus       252 -~GV~~ALP-FLia-------nTr~lmGl-~eyGrPi--aGw~-~~~P~~~~~Gk~VVVLGGG-----------D-TaMD  306 (480)
T TIGR01318       252 -PGVLKALP-FLIA-------NTRQLMGL-PEYGRPI--AGWE-PEEPLIDVEGKRVVVLGGG-----------D-TAMD  306 (480)
T ss_pred             -CCHHHHHH-HHHH-------CCCEECCC-CCCCCCC--CCCC-CCCCCCCCCCCEEEEECCC-----------C-CHHH
T ss_conf             -21666424-7766-------15212378-8877744--6777-6677423477668985888-----------7-5257


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--EEEEEC--CCCCCCCCCCCCCCCCCCCC-EEHH-HHHH
Q ss_conf             8878875136533332223288844220143045665578--089832--68612554076510047520-1115-6889
Q gi|254781043|r  233 GAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEG--GYLVNS--KGERFMERYAPSAKDLASRD-VVSR-CMMM  306 (611)
Q Consensus       233 G~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~rg~G--~~l~n~--~Gerf~~~y~~~~~el~~rd-~~s~-ai~~  306 (611)
                      =+.=|.|.||.-+         ||+|-..=     ....|  --..|+  +|=+|..+.-|...+.-.-. +... .+-.
T Consensus       307 CvRTaiR~GA~~V---------TC~YRRDE-----~nMPGSrrEV~NAREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t  372 (480)
T TIGR01318       307 CVRTAIRLGAKKV---------TCAYRRDE-----ANMPGSRREVANAREEGVEFLFNVQPLEIELDEDGKVIGVKLVRT  372 (480)
T ss_pred             HHHHHHHHCCCCC---------CEEEECCC-----CCCCCCHHHHCCCHHCCCEEEEEECCEEEEECCCCCEEEEEEECC
T ss_conf             8899998177613---------12665367-----787877555266111171132100315888778885233565235


Q ss_pred             HH----HHCCCC---CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf             98----817888---88887468861117989999985379999976436786544067520331001234215771585
Q gi|254781043|r  307 EI----REGRGV---GKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVL  379 (611)
Q Consensus       307 ei----~~g~g~---~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~  379 (611)
                      ++    ..||=-   -.|.+.|      ||.|.           ....+|.+|..-|+       ..--||.+|.|||++
T Consensus       373 ~~GEPDA~GRRrp~pv~GSE~v------l~ADv-----------vI~AFGF~P~~~pW-------L~~~gi~~ds~GrI~  428 (480)
T TIGR01318       373 KLGEPDAKGRRRPEPVAGSEFV------LPADV-----------VIMAFGFSPHAMPW-------LAEHGITLDSWGRII  428 (480)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEE------CCCCE-----------EEEEECCCCCCCCH-------HHHCCEEECCCCCEE
T ss_conf             6678677768777104786515------14655-----------89710678988644-------451775563463277


Q ss_pred             CC-----CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             37-----7888533227603402122033566430476432222223215677556654
Q gi|254781043|r  380 DA-----NSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI  433 (611)
Q Consensus       380 ~~-----~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~  433 (611)
                      -.     +....||+-|=+||.|++    +|||.     -.-.++--||.|++.+..|.
T Consensus       429 ~~lsd~~~~~~~QT~~PKiFAGGD~----vRGaD-----LVVTA~aeGR~AA~gi~~wL  478 (480)
T TIGR01318       429 TALSDEGSDLQYQTSNPKIFAGGDA----VRGAD-----LVVTAVAEGRKAAQGILDWL  478 (480)
T ss_pred             ECCCCCCCCCCCCCCCCCEECCCCC----EECCC-----HHHHHHHHHHHHHHHHHHHH
T ss_conf             5134556776533568847516770----14672-----20006676689999999985


No 188
>KOG2820 consensus
Probab=98.54  E-value=1.7e-06  Score=60.99  Aligned_cols=185  Identities=19%  Similarity=0.197  Sum_probs=92.9

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHH--------
Q ss_conf             323105889899689999999999889829999868988521041165342513789-99999999998998--------
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIK--------   84 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~--------   84 (611)
                      ++..+||+|||+|.=||++|.++++.|.+++|+|..++..+..  ++-|++-..-.. .+|-+-.+.-|.+.        
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~G--SShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~   81 (399)
T KOG2820           4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRG--SSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEE   81 (399)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC--CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             2465169998664000088999986577079873367776567--65674402120233689999999999998748464


Q ss_pred             HCCC---------CCCHHHHHHH---HH-------HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
Q ss_conf             4588---------7799999999---99-------889999999986998132799855100146411456787656407
Q gi|254781043|r   85 GSDW---------LGDVDAIQYL---AM-------EAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRT  145 (611)
Q Consensus        85 ~g~~---------l~d~~lv~~~---~~-------~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~  145 (611)
                      .|..         +.+.+-.+..   +.       +..-.-+++.+   .|..  ++     ++.--+....+       
T Consensus        82 ~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk---~fP~--~~-----~l~d~~~G~~n-------  144 (399)
T KOG2820          82 SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRK---RFPS--NI-----PLPDGWQGVVN-------  144 (399)
T ss_pred             HCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCC--CC-----CCCCCHHHCCC-------
T ss_conf             3336415620365076787778999998765003555302798997---5877--76-----57864122034-------


Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEE--EEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf             9866654266789999998731230311315652--00013443012468980587089950672474157656543342
Q gi|254781043|r  146 CAAADRTGHAILHTLYGQALKNNAEFFIEYFALD--LIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSA  223 (611)
Q Consensus       146 ~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~--Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~  223 (611)
                      -+.|....-.-+.+|...+++.|+.+..+..++.  ++ +++|..++|.   ..+|.  .|.||.+|+++|-+-.-|-++
T Consensus       145 ~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~-~e~~~~v~V~---Tt~gs--~Y~akkiI~t~GaWi~klL~~  218 (399)
T KOG2820         145 ESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFV-DEEGNHVSVQ---TTDGS--IYHAKKIIFTVGAWINKLLPT  218 (399)
T ss_pred             CCCCEEEHHHHHHHHHHHHHHCCEEEECCCCEEEEEEC-CCCCCEEEEE---ECCCC--EEECCEEEEEECHHHHHHCCC
T ss_conf             55657418899999999998708599627504567504-6778525899---66687--433124899830878865574


No 189
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=98.53  E-value=3.5e-07  Score=65.55  Aligned_cols=300  Identities=18%  Similarity=0.279  Sum_probs=138.5

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             31058898996899999999998898299998689885210411653425137899999999999899845887799999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI   95 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv   95 (611)
                      .+||.||||||.-|+..|-+|++.|++++|||.-.++  +|+        ++=..-|--+-|+                 
T Consensus         1 ~~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~LG--GTC--------VNVGCVPKKvMW~-----------------   53 (475)
T TIGR01421         1 KEYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKLG--GTC--------VNVGCVPKKVMWY-----------------   53 (475)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCCC--CEE--------EEECEECCHHHCC-----------------
T ss_conf             9754699836861578889888507607876200048--806--------8501137623200-----------------


Q ss_pred             HHHHHHHHHHHH-HHHHCCCCCC--CCCCC-CEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCE
Q ss_conf             999998899999-9998699813--27998-551001464114567876564079866654266789999998-731230
Q gi|254781043|r   96 QYLAMEAPQSVY-ELEHYGVPFS--RNEAG-KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAE  170 (611)
Q Consensus        96 ~~~~~~a~~~i~-~Le~~Gv~f~--r~~~G-~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~  170 (611)
                         +....+.++ .-+++|++-.  .+..+ ++..+.+           ..+|-.|.      .-.+..|++- .+.+|+
T Consensus        54 ---aa~~~e~~~~~~~~YGf~~~lPld~~~l~F~f~~l-----------~~~RdaYv------~rl~~~Y~~~L~~~~vd  113 (475)
T TIGR01421        54 ---AASLAETMHRDAADYGFKSELPLDKENLKFNFKEL-----------KEKRDAYV------DRLNGIYQKNLEKNKVD  113 (475)
T ss_pred             ---HHHHHHHHHHHHCCCCCCCCCCCCCCCCEECHHHH-----------HHHHHHHH------HHHHHHHHCCCCCCCEE
T ss_conf             ---56777887522102785433641003660077999-----------87667899------99888752486505543


Q ss_pred             EECCCEEEEEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCC--C
Q ss_conf             3113156520001344-301246898058708995067247415765654334210640144488788751365333--3
Q gi|254781043|r  171 FFIEYFALDLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD--M  247 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~--m  247 (611)
                      +...+-..-   + |+ --+-|   +-+.....+|+|+-+++||||-...- .-.|=|             |++|.-  =
T Consensus       114 ~i~G~A~F~---~-~~kPtveV---~g~~nttevy~A~HIliATGG~p~~p-he~~IP-------------G~elG~~Sd  172 (475)
T TIGR01421       114 VIEGHAEFT---K-DQKPTVEV---NGKENTTEVYTAPHILIATGGKPSIP-HEENIP-------------GAELGLDSD  172 (475)
T ss_pred             EEEEEEEEC---C-CCCCCEEE---CCCCCCEEEEECCEEEEECCCCCCCC-CCCCCC-------------CCCCCCCCC
T ss_conf             898678874---8-88963477---36424302576270589448724787-546778-------------401057700


Q ss_pred             CCCCC--CCCC--CCCCEEECCCC---CCCCCEEE-EECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH-CCCCCCCC
Q ss_conf             22232--8884--42201430456---65578089-83268612554076510047520111568899881-78888888
Q gi|254781043|r  248 EFVQF--HPTG--IYGAGCLITEG---ARGEGGYL-VNSKGERFMERYAPSAKDLASRDVVSRCMMMEIRE-GRGVGKSK  318 (611)
Q Consensus       248 Ef~qf--hPt~--~~~~~~l~~~~---~rg~G~~l-~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~-g~g~~~~~  318 (611)
                      .|+|+  .|.-  +.+.|..--|-   +-+.|..- +=-.+||-|-..+.         .++..+..++.+ |--+....
T Consensus       173 GfF~LEElP~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~vLR~FD~---------~i~~~~~~~~~~~G~~vh~~~  243 (475)
T TIGR01421       173 GFFALEELPKRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDRVLRSFDS---------MISEKVVEEYEKEGLEVHKLS  243 (475)
T ss_pred             CEEHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH---------HHHHHHHHHHHHCCCCCCCCC
T ss_conf             20022017871799907389888888873126402257736736674014---------664266899996796021566


Q ss_pred             CEEEEEEC--------CCCHH--H--HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             74688611--------17989--9--999853799999764367865440675203310012342157715853778885
Q gi|254781043|r  319 DHIHLYLN--------HLDPA--V--LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNP  386 (611)
Q Consensus       319 ~~v~ld~~--------~~~~~--~--l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~  386 (611)
                      .++-+.-+        |+..-  .  +-+.-+...+..+. .|--|..+-+..      -.=||..|.+|.+.-..-.| 
T Consensus       244 ~~~kveKt~~~d~~~i~~~~~PGrlPvm~~~~~~d~liwa-~GR~Pn~~~L~l------e~~gv~ld~kg~i~vDeyQN-  315 (475)
T TIGR01421       244 KPVKVEKTVEGDKLVIHFEDGPGRLPVMKEIDDVDELIWA-IGRKPNTKGLGL------EKVGVKLDEKGYIIVDEYQN-  315 (475)
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCCCCCCC------CCCCEEECCCCCEEEECCCC-
T ss_conf             0479984157864799996688865310234305678740-588567355442------13212566887388744106-


Q ss_pred             CCCCCCEEECCCCCCC
Q ss_conf             3322760340212203
Q gi|254781043|r  387 ERFAPGLMAIGEAGCA  402 (611)
Q Consensus       387 ~t~i~GLyAaGe~a~~  402 (611)
                       |+++|.||.|++ |+
T Consensus       316 -T~v~gIYAlGDV-~G  329 (475)
T TIGR01421       316 -TNVEGIYALGDV-VG  329 (475)
T ss_pred             -CCCCCEEEECCE-EE
T ss_conf             -731885872226-81


No 190
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.49  E-value=1.4e-05  Score=54.98  Aligned_cols=68  Identities=28%  Similarity=0.431  Sum_probs=49.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|-|||||.|||+||..+++.|.+|.|.||.+..+        |+...   ..|+              |.-..+.+.  
T Consensus       539 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~G--------GmL~y---GIP~--------------fRLPkevI~--  591 (1012)
T TIGR03315       539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG--------GVVKN---IIPE--------------FRISAESIQ--  591 (1012)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CEEEE---CCCC--------------CCCCHHHHH--
T ss_conf             89998977899999999997799569981589788--------54785---5887--------------778999999--


Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             99889999999986998132
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSR  118 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r  118 (611)
                           ..|++++++||.|..
T Consensus       592 -----reI~~i~~~GV~f~t  606 (1012)
T TIGR03315       592 -----KDIELVKFHGVEFKY  606 (1012)
T ss_pred             -----HHHHHHHHCCEEEEE
T ss_conf             -----999999968969997


No 191
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281   This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate .    Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.48  E-value=1.8e-05  Score=54.32  Aligned_cols=174  Identities=22%  Similarity=0.237  Sum_probs=89.6

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCHHCCCC---EEEECCCCCCC-CHHHHHHHHH-------H
Q ss_conf             05889899689999999999889829999868988--5210411653---42513789999-9999999899-------8
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT--RSHTVAAQGG---IAASLANMTPD-SWQWHLYDTI-------K   84 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~--~g~s~~A~GG---i~a~~~~~~~D-s~~~~~~Dt~-------~   84 (611)
                      |||||||+|.-|+.||..+|+++.+|+|||...+.  ||+|   .|-   |..+   -.+| -+..++....       +
T Consensus         1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSs---HG~sRiIR~a---Y~Edr~Y~~m~~e~~~lWa~le~   74 (401)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSS---HGQSRIIRKA---YPEDRFYTSMVSECYQLWAQLEK   74 (401)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CCCCCCEECC---CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             95799817613568999987538617887515677678887---8771000102---67863578899999999999862


Q ss_pred             -HCC-----------CCC-C-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEE-EEC
Q ss_conf             -458-----------877-9-9999999998899999999869981327998551001464114567876564079-866
Q gi|254781043|r   85 -GSD-----------WLG-D-VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTC-AAA  149 (611)
Q Consensus        85 -~g~-----------~l~-d-~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~-~~~  149 (611)
                       .|.           |.. + +.+....+.        +...++.=..-+.-.+.+ +|.|       ...+|+-. ..-
T Consensus        75 E~g~k~h~qT~~l~~G~k~~s~~l~~~~a~--------~~~~~l~H~~~~s~~l~~-rf~G-------~i~~p~n~~g~~  138 (401)
T TIGR01377        75 EAGTKLHRQTGLLLLGPKENSQSLKTIVAT--------LSRHGLEHELLSSKQLKQ-RFPG-------NIRVPRNEVGLL  138 (401)
T ss_pred             CCCCEEECCCCEEEECCCCCCHHHHHHHHH--------HHHCCCCEEEECCHHHHH-CCCC-------CEECCCCEEEEE
T ss_conf             147264313451563157786058999998--------862552303316412320-0476-------234068607887


Q ss_pred             CCCC-----HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             6542-----6678999999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  150 DRTG-----HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       150 d~tG-----~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      +.+|     ..-++++.+-+..+|..+++.+.|.++-.+++ .--++|......   ..|.||..|+..|-+.
T Consensus       139 ~~~gGvl~~~ka~~a~q~l~~~~Ga~v~d~~kV~~i~~~Ge-sGe~~vt~kt~~---~sy~a~~lvvtaGaW~  207 (401)
T TIGR01377       139 DELGGVLYAEKALRALQELAEAHGAIVRDGTKVVEIKPDGE-SGELLVTVKTTK---DSYQAKKLVVTAGAWT  207 (401)
T ss_pred             ECCCCEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCC-CCCCEEEEEEEC---CEEECCEEEEECCCCH
T ss_conf             46887462278999999999874968734860366542676-789548999727---7032135789538861


No 192
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.46  E-value=3.4e-06  Score=59.11  Aligned_cols=192  Identities=20%  Similarity=0.184  Sum_probs=99.7

Q ss_pred             EEECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCC--CC-CH--HH-----
Q ss_conf             31058898996899999999998--89829999868988---52104-116534251--37899--99-99--99-----
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMT--PD-SW--QW-----   77 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~--~D-s~--~~-----   77 (611)
                      .++||++||+|+.+.+-+..+++  ...+|.|+||..-.   .|+.. =|+-|.++.  +.+.+  +| ++  +.     
T Consensus         5 ~~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~~wNNAGTGHaa~CElNYTp~~~dg~i~i~KA~~In   84 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNERNNAGTGHAALCELNYTVQQADGSIDIKKAKEIN   84 (497)
T ss_pred             CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEHHHHHHHH
T ss_conf             77788998952889999999997699874899981475454407886655221001022048876569824179999999


Q ss_pred             --------HHHHHHHHCCCCCCHHH-HH-----------HHHHHHHHHHHHHHH----CCCCCCCCCCCCEEE-EC--CC
Q ss_conf             --------99989984588779999-99-----------999988999999998----699813279985510-01--46
Q gi|254781043|r   78 --------HLYDTIKGSDWLGDVDA-IQ-----------YLAMEAPQSVYELEH----YGVPFSRNEAGKIYQ-RP--FG  130 (611)
Q Consensus        78 --------~~~Dt~~~g~~l~d~~l-v~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~-~~--~g  130 (611)
                              +..-.++.| -+.+++- +.           .=|+--.++.+-|.+    -|+.|+.+.+ .+.. .|  .-
T Consensus        85 eqFe~S~QfWs~lv~~g-~l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal~~~~lF~~MefseD~~-~i~~w~PLvm~  162 (497)
T PRK13339         85 EQFEISKQFWGHLVKKG-TIGNPREFINPLPHISFVRGKNNVKFLKKRFEALKQHPMFDNIEYTEDIE-VMAKWMPLMMP  162 (497)
T ss_pred             HHHHHHHHHHHHHHHCC-CCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCHH-HHHHHCCEEEC
T ss_conf             99999999999998657-87985787377982467567588899999999873487877768605989-99753775226


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCC-----HHHHHHHHHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEE
Q ss_conf             41145678765640798666542-----66789999998731-2303113156520001344301246898058708995
Q gi|254781043|r  131 GHMQNYGEGPPVQRTCAAADRTG-----HAILHTLYGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRF  204 (611)
Q Consensus       131 g~~~~~~~g~~~~R~~~~~d~tG-----~~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i  204 (611)
                      |...      . ..++...-..|     -+|.+.|.+.+.+. |++++.++.|++|-...||.= -+.+.|..+|+...+
T Consensus       163 gR~~------~-e~vAAtr~~~GTDVdFGaLTr~l~~~l~~~~~~~v~~~~eV~~i~r~~dg~w-~v~v~~~~~~~~~~~  234 (497)
T PRK13339        163 GREA------D-EIMAASKIDEGTDVNFGALTRKMAKSLEAHPNAQVQYNHEVVDLERLSDGGW-EVTVKDRNTGGKREQ  234 (497)
T ss_pred             CCCC------C-CCEEEEECCCCEEECHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCE-EEEEEECCCCCEEEE
T ss_conf             9897------8-8555882578534018999999999997489839994788632177899988-999996578975999


Q ss_pred             CCCCEEEECCCCC
Q ss_conf             0672474157656
Q gi|254781043|r  205 SAKLVVLATGGYG  217 (611)
Q Consensus       205 ~AkaVILATGG~~  217 (611)
                      .|+.|.+..||.+
T Consensus       235 ~A~fVFvGAGG~s  247 (497)
T PRK13339        235 VADYVFIGAGGGA  247 (497)
T ss_pred             EECEEEECCCHHH
T ss_conf             9367998887377


No 193
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.46  E-value=2.8e-06  Score=59.67  Aligned_cols=195  Identities=22%  Similarity=0.200  Sum_probs=100.5

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCCC--C-CH--HH----
Q ss_conf             2310588989968999999999988--9829999868988---52104-116534251--378999--9-99--99----
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMTP--D-SW--QW----   77 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~~--D-s~--~~----   77 (611)
                      +.++||++||+|+.|.+-+..+++-  ..++.|+||....   .|+.. =|+-|.++-  +.+.++  | ++  ..    
T Consensus         2 ~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~I   81 (489)
T pfam06039         2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKI   81 (489)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             96102999996288999999999759987489998147525550788665521000213414887656884427999999


Q ss_pred             ---------HHHHHHHHCCCCCCHHHH-H-----------HHHHHHHHHHHHHHH----CCCCCCCCCCCCEEEECCCCC
Q ss_conf             ---------999899845887799999-9-----------999988999999998----699813279985510014641
Q gi|254781043|r   78 ---------HLYDTIKGSDWLGDVDAI-Q-----------YLAMEAPQSVYELEH----YGVPFSRNEAGKIYQRPFGGH  132 (611)
Q Consensus        78 ---------~~~Dt~~~g~~l~d~~lv-~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~~~~gg~  132 (611)
                               +....++.| -+.+|+-. .           .=|+--.++.+-|.+    -++.|+.+.+ .+..- .+  
T Consensus        82 neqFe~Srqfws~lv~~g-~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~-~i~~w-~P--  156 (489)
T pfam06039        82 NEQFQISRQFWAYLVKEG-VLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPE-KIKEW-VP--  156 (489)
T ss_pred             HHHHHHHHHHHHHHHHCC-CCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHH-HHHHH-CC--
T ss_conf             999999999999998758-98985785056881589877698899999999850587867778447989-99864-48--


Q ss_pred             CCCCCCCCCCC-EEEE--ECCCC---CHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEEC
Q ss_conf             14567876564-0798--66654---26678999999873-123031131565200013443012468980587089950
Q gi|254781043|r  133 MQNYGEGPPVQ-RTCA--AADRT---GHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFS  205 (611)
Q Consensus       133 ~~~~~~g~~~~-R~~~--~~d~t---G~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~  205 (611)
                        -...|.... .++.  ....|   =-+|.+.|.+.+.+ .+++++.++.|++|-..+||.=. +.+.|..+|+...+.
T Consensus       157 --Lv~~gR~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~-v~v~~~~~~~~~~~~  233 (489)
T pfam06039       157 --LMMEGRDPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWT-VTVKDLNTGDKRTIK  233 (489)
T ss_pred             --CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEE-EEEEECCCCCEEEEE
T ss_conf             --00379797885579944887401189999999999851898289927885345888999879-999865789748998


Q ss_pred             CCCEEEECCCCC
Q ss_conf             672474157656
Q gi|254781043|r  206 AKLVVLATGGYG  217 (611)
Q Consensus       206 AkaVILATGG~~  217 (611)
                      ||.|++..||.+
T Consensus       234 A~fVfvgAGG~s  245 (489)
T pfam06039       234 AKFVFIGAGGGA  245 (489)
T ss_pred             ECEEEECCCHHH
T ss_conf             267998887577


No 194
>PRK07236 hypothetical protein; Provisional
Probab=98.45  E-value=8.9e-06  Score=56.38  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             058898996899999999998898299998689
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      --|+|||+|+|||++|+.++++|.+|.|+||.+
T Consensus         7 ~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~   39 (386)
T PRK07236          7 PRAVVVGGSLGGLFAANLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             968999936899999999985899989986899


No 195
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.44  E-value=1.3e-05  Score=55.22  Aligned_cols=69  Identities=28%  Similarity=0.397  Sum_probs=49.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|-|||||.|||+||..+++.|.+|.|.||.+..+        |+-.   ...|+              |.-..+.+.  
T Consensus       552 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~G--------GmL~---yGIP~--------------fRLPk~vId--  604 (1032)
T PRK09853        552 PVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAG--------GVVK---NIIPE--------------FRIPAELIQ--  604 (1032)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CEEE---ECCCC--------------CCCCHHHHH--
T ss_conf             79998968899999999997799369981589788--------4267---35887--------------678999999--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             998899999999869981327
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRN  119 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~  119 (611)
                           ..|++|+++||.|..+
T Consensus       605 -----reI~~l~~~GV~f~tn  620 (1032)
T PRK09853        605 -----HDIDFVAAHGVKFEYG  620 (1032)
T ss_pred             -----HHHHHHHHCCCEEEEC
T ss_conf             -----9999999779699969


No 196
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.43  E-value=9.3e-06  Score=56.23  Aligned_cols=37  Identities=27%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCC
Q ss_conf             310588989968999999999988982-9999868988
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFK-TACITKVFPT   52 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~-V~lieK~~~~   52 (611)
                      ..+||+|||+|.|||.+|..+++.|.+ ++++||..-.
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~   44 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV   44 (443)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             75548998987889999999997599867999705766


No 197
>PRK07588 hypothetical protein; Provisional
Probab=98.43  E-value=1.4e-05  Score=55.06  Aligned_cols=153  Identities=17%  Similarity=0.173  Sum_probs=78.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|+|||+|+|||++|+.++++|.+|+|+||.+..+...    -+|+  +.   +  .-   .+.++. -|+         
T Consensus         2 kVlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r~~G----~~i~--l~---~--~~---~~vl~~-lGl---------   57 (391)
T PRK07588          2 KIAISGAGIAGATLAHWLQRTGHEPTLIERAPKLRTGG----YMVD--FW---G--VG---YEVAKR-MGI---------   57 (391)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----EEEE--EC---C--HH---HHHHHH-CCC---------
T ss_conf             79999932899999999986899989990389888773----3872--38---3--99---999998-799---------


Q ss_pred             HHHHHHHHHHHHHCCCCCC----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             9988999999998699813----279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFS----RNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~----r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                             .+.+.+.|.+..    .+.+|+.... +.-.......+..+ ...+     =..+...|++.+ +.++++...
T Consensus        58 -------~d~l~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~-~~i~-----R~dL~~~L~~~~-~~~v~v~~g  122 (391)
T PRK07588         58 -------TDQLAEAGYQIEHIRSVGPTGRVKAD-LNVDVFRRMVGDDF-TSLP-----RGDLAATIYTTI-EGQVETIFD  122 (391)
T ss_pred             -------HHHHHHCCCCCEEEEEECCCCCEEEE-CCCHHHCCCCCCCC-EEEC-----HHHHHHHHHHHC-CCCCEEEEC
T ss_conf             -------38998527885069999999988874-37123111347752-1453-----999999999751-448789979


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             1565200013443012468980587089950672474157656
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ..++.+-.++||    |.+ ...+|+..  .++-||=|-|-.+
T Consensus       123 ~~v~~i~~~~dg----V~v-~f~dG~~~--~~DlvVGADGi~S  158 (391)
T PRK07588        123 DSIATIDEHRDG----VRL-TLERGTPR--DFDLVIGADGLHS  158 (391)
T ss_pred             CEEEEEEECCCE----EEE-EECCCCEE--EEEEEEECCCCCC
T ss_conf             999999962995----899-98799888--8759995487640


No 198
>KOG2853 consensus
Probab=98.40  E-value=7.1e-06  Score=57.02  Aligned_cols=193  Identities=17%  Similarity=0.255  Sum_probs=101.7

Q ss_pred             CCEEEEEECEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCCCC-CCCHHCCCCEEEECCCCCCCCHH--HHHHHHH
Q ss_conf             4133231058898996899999999998----898299998689885-21041165342513789999999--9999899
Q gi|254781043|r   11 YTYVDHSYDVVVVGAGGAGLRATLGMAE----KGFKTACITKVFPTR-SHTVAAQGGIAASLANMTPDSWQ--WHLYDTI   83 (611)
Q Consensus        11 ~~~~d~~~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK~~~~~-g~s~~A~GGi~a~~~~~~~Ds~~--~~~~Dt~   83 (611)
                      .++....|||||||+|..|.+.|.=++|    .|++|+|+|+..... ++|..+-|||.-.+.  .++.++  .+..+.+
T Consensus        80 ~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS--lpEnIqmSLF~a~Fl  157 (509)
T KOG2853          80 NEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS--LPENIQMSLFTAEFL  157 (509)
T ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCEEEECC--CCHHHHHHHHHHHHH
T ss_conf             655544367899888865226589998876437943999962675210011455544433214--610011356799999


Q ss_pred             HHC-CC--------------------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             845-88--------------------779999999999889999999986998132799855100146411456787656
Q gi|254781043|r   84 KGS-DW--------------------LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV  142 (611)
Q Consensus        84 ~~g-~~--------------------l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~  142 (611)
                      +.+ .+                    |+-++-++.+..++    +.-.+.|..-..-..-.+.. +|+     +.+-..+
T Consensus       158 r~a~ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~----kvQ~e~GAk~eLls~d~Lt~-rfP-----wlntegV  227 (509)
T KOG2853         158 RNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNS----KVQNELGAKVELLSPDELTK-RFP-----WLNTEGV  227 (509)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHH----HHHHHHCCHHCCCCHHHHHH-HCC-----CCCCCCE
T ss_conf             8777763536677887004777048970502489987757----88776353000348788763-287-----3133562


Q ss_pred             CEEEEE----CCCCCHHHHHHHHHHHHHCCCEEECC---------CEEEEEEECCCC-------CCEEEEEEEECCCEEE
Q ss_conf             407986----66542667899999987312303113---------156520001344-------3012468980587089
Q gi|254781043|r  143 QRTCAA----ADRTGHAILHTLYGQALKNNAEFFIE---------YFALDLIINSEG-------CCVGVVAWQLETGEIH  202 (611)
Q Consensus       143 ~R~~~~----~d~tG~~i~~~L~~~~~~~gv~i~~~---------~~~~~Li~d~dG-------~V~Gav~~~~~~G~~~  202 (611)
                      .-.++.    +.-.-.+++..+.+++...|+.+...         ...+.+.+| +|       ++.||++. +.++--.
T Consensus       228 aLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tD-d~t~~~~~~~i~~vvV~-m~d~~~r  305 (509)
T KOG2853         228 ALASLGVEKEGWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTD-DGTAKLRAQRISGVVVR-MNDALAR  305 (509)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEEEEECCCCEEEECC-CCHHHHHHCCCCEEEEE-CCCHHCC
T ss_conf             332024453566577999998888765313067423588789703110465325-63244554022203785-6740027


Q ss_pred             EECCCCEEEECCCCC
Q ss_conf             950672474157656
Q gi|254781043|r  203 RFSAKLVVLATGGYG  217 (611)
Q Consensus       203 ~i~AkaVILATGG~~  217 (611)
                      .+++.-+|+|.|-++
T Consensus       306 ~vk~al~V~aAGa~s  320 (509)
T KOG2853         306 PVKFALCVNAAGAWS  320 (509)
T ss_pred             CEEEEEEEECCCCCH
T ss_conf             324788985267317


No 199
>KOG1238 consensus
Probab=98.36  E-value=6.6e-05  Score=50.66  Aligned_cols=51  Identities=22%  Similarity=0.302  Sum_probs=38.1

Q ss_pred             HCCCEEECCCEEEEEEECCCC-CCEEEEEEEECCCEEEEECCC-CEEEECCCCC
Q ss_conf             312303113156520001344-301246898058708995067-2474157656
Q gi|254781043|r  166 KNNAEFFIEYFALDLIINSEG-CCVGVVAWQLETGEIHRFSAK-LVVLATGGYG  217 (611)
Q Consensus       166 ~~gv~i~~~~~~~~Li~d~dG-~V~Gav~~~~~~G~~~~i~Ak-aVILATGG~~  217 (611)
                      +.+..+...+.++.++.|..| +..|++. ..+.|+.+.++|+ -|||+.|-++
T Consensus       266 R~NL~~~~~~~vtrvl~D~~~~~a~gv~~-~~~~~~~~~v~a~kEVILSAGAi~  318 (623)
T KOG1238         266 RPNLHISRNAAVTRVLIDPAGKRAKGVEF-VRDGGKEHTVKARKEVILSAGAIN  318 (623)
T ss_pred             CCCCCCCCCCEEEEEEECCCCCEEEEEEE-EECCCEEEEECCCCEEEEECCCCC
T ss_conf             76544234422799998588866899999-823761466302221998356557


No 200
>PRK06753 hypothetical protein; Provisional
Probab=98.35  E-value=4.2e-05  Score=51.97  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             58898996899999999998898299998689885
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR   53 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~   53 (611)
                      -|+|||+|+|||++|+.++++|.+|.|+||.+..+
T Consensus         2 kV~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~   36 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHTVKVFEKNESVT   36 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             89999945899999999997799999988899988


No 201
>PRK05868 hypothetical protein; Validated
Probab=98.32  E-value=5.1e-05  Score=51.42  Aligned_cols=159  Identities=18%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|||||+|+|||++|+.+++.|.+|.|+||.+..+...    .+|.-     .+  .-..+-+-|    |+-|+  ++  
T Consensus         3 kVlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G----~~i~l-----~~--~a~~vL~~m----Gl~d~--~~--   63 (372)
T PRK05868          3 TVLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGG----QAIDV-----RG--PALDVLERM----GLLAA--AQ--   63 (372)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CEEEE-----CH--HHHHHHHHC----CCHHH--HH--
T ss_conf             99998988899999999985899889995799988899----66746-----86--999999987----89789--98--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEE
Q ss_conf             99889999999986998132799855100146411456787656407986665426678999999873123031131565
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFAL  178 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~  178 (611)
                       +++..      .-|..| .+.+|+...+.....    ..+.+.......--  =..|...|++ +.+.+++++.++.++
T Consensus        64 -~~~~~------~~~~~~-~d~~G~~l~~~~~~~----~~g~~~~~~~~~i~--R~dL~~~L~~-a~~~~v~~~~g~~v~  128 (372)
T PRK05868         64 -ERKTR------IRGASV-VDRDGNELSRDTEST----PTGGPINSPDIELL--RDDLVELLYG-ATQPTVEYLFDDSIS  128 (372)
T ss_pred             -HHCCC------CCCEEE-EECCCCEEEECCCCC----CCCCCCCCCEEEHH--HHHHHHHHHH-HCCCCEEEEECCEEE
T ss_conf             -61578------642399-948998987526666----55675688400031--9999999986-345880999578889


Q ss_pred             EEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             2000134430124689805870899506724741576565
Q gi|254781043|r  179 DLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       179 ~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+-.+++ .| -| .  ..+|...  .++-||=|-|=.+.
T Consensus       129 ~i~~~~~-~V-~V-~--f~dg~~~--~~DlVIGADGi~S~  161 (372)
T PRK05868        129 TLQDDGA-AV-RV-T--FERAAAR--EFDLVIGADGLHSN  161 (372)
T ss_pred             EEEECCC-EE-EE-E--EECCCEE--EEEEEEECCCCCHH
T ss_conf             9996499-79-99-9--9079857--86589974787417


No 202
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=98.28  E-value=3.4e-05  Score=52.55  Aligned_cols=52  Identities=10%  Similarity=-0.029  Sum_probs=36.6

Q ss_pred             HHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf             99999987312303113156520001344301246898058708995067247415765
Q gi|254781043|r  158 HTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       158 ~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~  216 (611)
                      ..+...+...+.+|+.++.|+++..++ ++|. +   ...+|+  .+.|+.||+|+--.
T Consensus       208 ~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~-v---~~~~G~--~~~ad~VI~a~p~~  259 (444)
T pfam01593       208 QLIAAALGLLGGRVRLNTRVRSITKEG-DGVT-V---TTVDGE--VIEADAVIVTVPLG  259 (444)
T ss_pred             HHHHHHHHCCCCEEEECCEEEEEEEEC-CEEE-E---EECCCC--EEECCEEEECCCHH
T ss_conf             999999741598699589778999969-9699-9---988997--66448689857988


No 203
>KOG0405 consensus
Probab=98.27  E-value=6.3e-06  Score=57.36  Aligned_cols=147  Identities=21%  Similarity=0.353  Sum_probs=78.2

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             23105889899689999999999889829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      +..||.||||+|..|+.+|-+|++.|++|.|+|-.... |+|+        ++-..-|..                    
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l-GGTC--------Vn~GCVPKK--------------------   68 (478)
T KOG0405          18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL-GGTC--------VNVGCVPKK--------------------   68 (478)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC-CCEE--------EEECCCCCE--------------------
T ss_conf             44236699847861367767787538537998637786-7447--------860456413--------------------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-HCCCEEEC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542667899999987-31230311
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL-KNNAEFFI  173 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gv~i~~  173 (611)
                      +..++..-...++.-.++|.+..  +.+++..+.+           ..+|..|.      .-+..+|++.+ +.+|+++.
T Consensus        69 vm~~~a~~~~~~~da~~yG~~~~--~~~~fdW~~i-----------k~krdayi------~RLngIY~~~L~k~~V~~i~  129 (478)
T KOG0405          69 VMWYAADYSEEMEDAKDYGFPIN--EEGSFDWKVI-----------KQKRDAYI------LRLNGIYKRNLAKAAVKLIE  129 (478)
T ss_pred             EEEEHHHHHHHHHHHHHCCCCCC--CCCCCCHHHH-----------HHHHHHHH------HHHHHHHHHHCCCCCEEEEE
T ss_conf             67744455677545664298534--4467767998-----------75116899------98878988542315406996


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             31565200013443012468980587089950672474157656
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ..--  + ++ ++.|    ..+..+|...+|.||.+.+||||-.
T Consensus       130 G~a~--f-~~-~~~v----~V~~~d~~~~~Ytak~iLIAtGg~p  165 (478)
T KOG0405         130 GRAR--F-VS-PGEV----EVEVNDGTKIVYTAKHILIATGGRP  165 (478)
T ss_pred             EEEE--E-CC-CCCE----EEEECCCEEEEEECCEEEEEECCCC
T ss_conf             2678--7-58-9944----7995388157872140899737846


No 204
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.19  E-value=2.2e-06  Score=60.28  Aligned_cols=42  Identities=36%  Similarity=0.513  Sum_probs=37.1

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             323105889899689999999999889829999868988521
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH   55 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~   55 (611)
                      +|..=++||||||.||+.||+++++.|.+|.||||.+..+|.
T Consensus       121 ~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr  162 (622)
T COG1148         121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR  162 (622)
T ss_pred             HHHCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             753053599868489899999999759808999417864504


No 205
>KOG4254 consensus
Probab=98.16  E-value=8.3e-06  Score=56.56  Aligned_cols=56  Identities=25%  Similarity=0.374  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf             67899999987312303113156520001344301246898058708995067247415765
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~  216 (611)
                      ++..++.+-+.+.|.+|+++..|..+++|. |+++||..   ++|+  .+.+|.||--++=+
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L---~dG~--ev~sk~VvSNAt~~  320 (561)
T KOG4254         265 AVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRL---ADGT--EVRSKIVVSNATPW  320 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEEHHHHHHEECCC-CEEEEEEE---CCCC--EEEEEEEECCCCHH
T ss_conf             899999999986061421021144603138-82787895---5885--87711565178467


No 206
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=98.14  E-value=0.00043  Score=45.34  Aligned_cols=55  Identities=18%  Similarity=0.204  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             6789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      .+..-|.+.+.+.||+.... .++++..+++|.|..++   +++|+  .|.|.-.|=|||=
T Consensus       158 k~~~~Lr~~a~~~GV~~i~~-~V~~v~~~~~G~I~sl~---l~~G~--~i~aDlfIDCTGF  212 (457)
T pfam04820       158 LYARFLRRNAEARGVTRVEG-KVVDVQLDADGFVTSLR---LEDGR--EVEADLFIDCSGF  212 (457)
T ss_pred             HHHHHHHHHHHHCCCEEEEE-EEEEEEECCCCCEEEEE---ECCCC--EEEEEEEEECCCC
T ss_conf             99999999888579889984-78799988999678999---67898--8876489977874


No 207
>KOG2844 consensus
Probab=98.13  E-value=0.00019  Score=47.61  Aligned_cols=186  Identities=20%  Similarity=0.149  Sum_probs=91.4

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCHHCCCCEEEECCCCCCCCH-HHHHHHHH------HHCC
Q ss_conf             3105889899689999999999889829999-86898852104116534251378999999-99999899------8458
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACI-TKVFPTRSHTVAAQGGIAASLANMTPDSW-QWHLYDTI------KGSD   87 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~li-eK~~~~~g~s~~A~GGi~a~~~~~~~Ds~-~~~~~Dt~------~~g~   87 (611)
                      ...||+|||+|.+|+.+|...++.|.++.++ ++....+|.|..+.| .-..+  -.+|+. +....+..      ..-.
T Consensus        38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtag-l~~~l--r~~dv~~qlia~~~~~l~~~leeEt  114 (856)
T KOG2844          38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAG-LLWQL--FPSDVELQLIAHTSRVLYRELEEET  114 (856)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC-CEEEC--CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             86557998578504789999997146524787641103665633301-03203--6896039998878899999999861


Q ss_pred             CCC---CHHHHHHHHHHHHHH---HHHHHHCCCCCCCCCCCCE----EEECCCCCCCCCCCCCCCCEEEEE-CCC--CCH
Q ss_conf             877---999999999988999---9999986998132799855----100146411456787656407986-665--426
Q gi|254781043|r   88 WLG---DVDAIQYLAMEAPQS---VYELEHYGVPFSRNEAGKI----YQRPFGGHMQNYGEGPPVQRTCAA-ADR--TGH  154 (611)
Q Consensus        88 ~l~---d~~lv~~~~~~a~~~---i~~Le~~Gv~f~r~~~G~~----~~~~~gg~~~~~~~g~~~~R~~~~-~d~--tG~  154 (611)
                      ++-   .|. =..+.-.+..+   .+.|...|..+.. +.--+    .+..|+-     .+-..+.-..|. +|.  .-.
T Consensus       115 gl~tGwiq~-G~~~lAs~~~R~de~kR~~S~g~a~g~-e~~lLsPee~~~~~pL-----Ln~d~v~g~Ly~P~DG~~DP~  187 (856)
T KOG2844         115 GLHTGWIQN-GGIFLASNRQRLDEYKRLMSRGKAHGV-ESELLSPEETQELFPL-----LNVDDVYGGLYSPGDGVMDPA  187 (856)
T ss_pred             CCCCCEECC-CCEEEECCHHHHHHHHHHHHHHHHCCC-EEEECCHHHHHHHCCC-----CCHHHHEEEEECCCCCCCCHH
T ss_conf             997632427-816870477789999999976433153-1055389999886756-----566674012035887644889


Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             6789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+..+|...+.+.|+.|++++.+++|-...| ++.||-   ..-|   .|.+.-||-|||=+++
T Consensus       188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVe---T~~G---~iet~~~VNaaGvWAr  244 (856)
T KOG2844         188 GLCQALARAASALGALVIENCPVTGLHVETD-KFGGVE---TPHG---SIETECVVNAAGVWAR  244 (856)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCEEEEECC-CCCCEE---CCCC---CEECCEEEECHHHHHH
T ss_conf             9999999999853847981487425775037-755430---4676---4443527852227798


No 208
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=98.11  E-value=1.8e-05  Score=54.44  Aligned_cols=146  Identities=16%  Similarity=0.208  Sum_probs=79.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|.|||+|.+||.||-.+.|+|.+++++||..-.+| .. .       ..+..++. ..-+++.+.              
T Consensus         3 rVAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG-~W-~-------~~~~~~~~-~~~~y~sl~--------------   58 (532)
T pfam00743         3 KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGG-LW-R-------FTEHVEEG-RASIYKSVV--------------   58 (532)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CC-C-------CCCCCCCC-CCCCCCCEE--------------
T ss_conf             799989729999999999877998299977999735-06-6-------88887888-676489706--------------


Q ss_pred             HHHHHHHHHHHHHC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC--EEECCC
Q ss_conf             99889999999986-998132799855100146411456787656407986665426678999999873123--031131
Q gi|254781043|r   99 AMEAPQSVYELEHY-GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNA--EFFIEY  175 (611)
Q Consensus        99 ~~~a~~~i~~Le~~-Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv--~i~~~~  175 (611)
                       -+++   .++..+ ..||.             .....      ++        +..++.+-|..-+...++  .|..+|
T Consensus        59 -~Nts---k~~~~fSDfP~P-------------~~~p~------f~--------~~~~v~~YL~~YA~hF~L~~~Irf~t  107 (532)
T pfam00743        59 -TNSS---KEMSCFSDFPFP-------------EDYPN------FM--------HNSKFLEYLRMFAKHFDLLKYIQFKT  107 (532)
T ss_pred             -EECC---CHHHCCCCCCCC-------------CCCCC------CC--------CHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf             -8589---005138999899-------------87889------98--------98999999999999809967376577


Q ss_pred             EEEEEEECCCCCCEEE--EEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf             5652000134430124--68980587089950672474157656543
Q gi|254781043|r  176 FALDLIINSEGCCVGV--VAWQLETGEIHRFSAKLVVLATGGYGRAY  220 (611)
Q Consensus       176 ~~~~Li~d~dG~V~Ga--v~~~~~~G~~~~i~AkaVILATGG~~~ly  220 (611)
                      .|+.+-...|....|-  +.. ..+|+...-..++||+|||-+..-+
T Consensus       108 ~V~~V~~~~d~~~~g~W~V~~-~~~g~~~~~~fD~ViVctG~~~~P~  153 (532)
T pfam00743       108 TVCSVTKRPDFSTSGQWEVVT-EHEGKQESAVFDAVMVCTGHHTNPH  153 (532)
T ss_pred             EEEEEEECCCCCCCCEEEEEE-EECCEEEEEEEEEEEEECCCCCCCC
T ss_conf             899999766766686189999-8589088999779999466778687


No 209
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in  Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.11  E-value=4.4e-06  Score=58.34  Aligned_cols=242  Identities=19%  Similarity=0.253  Sum_probs=118.9

Q ss_pred             EECEEEECCCHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCH--HCCC-CEEEE--------------------------
Q ss_conf             105889899689999999-99988982999986898852104--1165-34251--------------------------
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATL-GMAEKGFKTACITKVFPTRSHTV--AAQG-GIAAS--------------------------   66 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi-~A~e~G~~V~lieK~~~~~g~s~--~A~G-Gi~a~--------------------------   66 (611)
                      .||.||||||+||..+|- .+++.|.+|+||||-.-.+|+|.  ...+ ||..-                          
T Consensus         1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~Tgil~H~YGpHIfHTd~~~v~~y~~~f~E~n~   80 (390)
T TIGR00031         1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDENTGILFHQYGPHIFHTDNQEVFDYISPFFELNN   80 (390)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHCCCHHHHC
T ss_conf             95179986636779999999997099889997306658734442248874367741880354385314322322024322


Q ss_pred             ------CC--C-----CCCC----------CHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHH------------
Q ss_conf             ------37--8-----9999----------999999989984588-7799999999998899999999------------
Q gi|254781043|r   67 ------LA--N-----MTPD----------SWQWHLYDTIKGSDW-LGDVDAIQYLAMEAPQSVYELE------------  110 (611)
Q Consensus        67 ------~~--~-----~~~D----------s~~~~~~Dt~~~g~~-l~d~~lv~~~~~~a~~~i~~Le------------  110 (611)
                            |.  +     .+-|          +-..-+...+++-.. ..+.=.+..|-+.+...|+.|-            
T Consensus        81 Y~hrvGL~l~~~~~~~LPFn~~~~~~Ll~~k~a~~l~~~~~~~~~k~~~~vpl~~L~~~~~p~i~~l~~~l~~~v~~~Yt  160 (390)
T TIGR00031        81 YQHRVGLALKNNLDLTLPFNLNQLRKLLGVKDAEELENFLKARFKKFGAHVPLLELQEIADPDIQLLYQFLYRKVYKPYT  160 (390)
T ss_pred             CCCCCCCCEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             45775751106775679847799998628887689999998632320461556888411685378899999998624777


Q ss_pred             --HCCCCCCCCCC---CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEECCCEEEEEEECC
Q ss_conf             --86998132799---8551001464114567876564079866654266789999998731-23031131565200013
Q gi|254781043|r  111 --HYGVPFSRNEA---GKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIEYFALDLIINS  184 (611)
Q Consensus       111 --~~Gv~f~r~~~---G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~  184 (611)
                        .||.++..-+.   |.+-.+ +--...++.     .|+.-+-++.|-   ..+.+++.+. =|++..+|--.+||...
T Consensus       161 ~K~WGl~~~~~~~~v~~Rvpv~-Ls~d~~YF~-----dr~yQg~P~~GY---T~~~~kML~~Plidl~Lntc~~~~L~~~  231 (390)
T TIGR00031       161 VKQWGLPLEEIDPEVIGRVPVV-LSEDSSYFP-----DRIYQGLPKGGY---TKLFEKMLDHPLIDLKLNTCKINLLKLK  231 (390)
T ss_pred             CCCCCCCHHHCCHHHHCCEEEE-EECCCCCCC-----CCEEECCCCCCH---HHHHHHHHCCCEEEEECCCCHHHHHHHC
T ss_conf             3336788577680161635389-503688666-----524622367535---7998997409846763088745664205


Q ss_pred             CCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCC----------------------CCCEECCHHHHHHHHHCC
Q ss_conf             4430124689805870899506724741576565433421----------------------064014448878875136
Q gi|254781043|r  185 EGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSAT----------------------SAHTCTGDGAGMVARAGL  242 (611)
Q Consensus       185 dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t----------------------~~~~~tGdG~~mA~~aGa  242 (611)
                      |++..    +  .+..   |+  .=|+=||=.=.+|-++-                      +|..|--|       +-.
T Consensus       232 D~ql~----f--~~~~---~~--k~viYtG~ID~lF~YrFG~L~YRSL~f~~~r~~~~~fQ~~avvN~pD-------~~~  293 (390)
T TIGR00031       232 DSQLF----F--ANKE---IR--KPVIYTGLIDQLFGYRFGELQYRSLKFEWERYETKKFQEYAVVNYPD-------LDV  293 (390)
T ss_pred             CCEEE----E--CCCC---CC--CCEEEECCCHHHCCCEECCCCCCCCCCCHHCCCCCCCCCCCEECCCC-------CCC
T ss_conf             76255----4--3776---65--77677437320127201577652210000000340116766340567-------769


Q ss_pred             C-CCCCCCCCCCCCCCCCCEEECC-CCCCCCCEEEEECCCC-CCCCCCCCCC
Q ss_conf             5-3333222328884422014304-5665578089832686-1255407651
Q gi|254781043|r  243 P-LQDMEFVQFHPTGIYGAGCLIT-EGARGEGGYLVNSKGE-RFMERYAPSA  291 (611)
Q Consensus       243 ~-l~~mEf~qfhPt~~~~~~~l~~-~~~rg~G~~l~n~~Ge-rf~~~y~~~~  291 (611)
                      . .+-.||=|||+++...+.+.++ |-+   |.   =..|+ ||+|-|+|-.
T Consensus       294 ~~TR~~EyK~L~~~~~~~~~T~v~~EyP---~~---~~~GdPRFnEpyYPvn  339 (390)
T TIGR00031       294 DITRIVEYKHLTPTGLESKQTIVSKEYP---GE---YKVGDPRFNEPYYPVN  339 (390)
T ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEECC---CC---CCCCCCCCCCCCCCCC
T ss_conf             7432565443266777446747874067---56---5448885457878767


No 210
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.02  E-value=0.00035  Score=45.93  Aligned_cols=58  Identities=19%  Similarity=0.112  Sum_probs=41.7

Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             266789999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ...++.+|.+.+. .+++++.++.+++|..++ +++..+    ..+|.  .|.|+.||+|+|-...
T Consensus       134 p~~~~~al~~~a~-~g~~~~~~~~V~~i~~~g-~~~~v~----~~~g~--~~~ad~vV~AaG~~s~  191 (381)
T TIGR03197       134 PPQLCRALLAHAG-IRLTLHFNTEITSLERDG-EGWQLL----DANGE--VIAASVVVLANGAQAG  191 (381)
T ss_pred             HHHHHHHHHHHHH-HCCEEEECCEEEEEEEEC-CEEEEE----ECCCC--EEECCEEEECCCCCHH
T ss_conf             8999999999997-297899362589999959-989999----89998--8973558985542035


No 211
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253   This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=98.02  E-value=5e-06  Score=58.02  Aligned_cols=348  Identities=18%  Similarity=0.241  Sum_probs=150.2

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             05889899689999999999889829999868988521041165342513789999999999989984588779999999
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQY   97 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~   97 (611)
                      |||+|||||.+|-+||..+++.|.+|+||||...   +.-=.+|.|.-.+- .+-|=|+..+.-=++            .
T Consensus         1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~---~~KPCGGAIPp~li-~EFdiP~~li~~r~~------------~   64 (408)
T TIGR02023         1 YDVAVIGGGPSGAAAAETLARAGIETILLERALS---RIKPCGGAIPPCLI-EEFDIPDDLIDRRVR------------K   64 (408)
T ss_pred             CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHC---CCCCCCCCCCHHHC-CCCCCCHHHHHHHHC------------E
T ss_conf             9678981685068999999864974886302432---65888886651101-235788889973200------------6


Q ss_pred             HHHHHHH--HHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             9998899--99999986998132799855100146411456787656407986665426678999999873123031131
Q gi|254781043|r   98 LAMEAPQ--SVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        98 ~~~~a~~--~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                      +---||.  .+..=...-+|.   +++.+      |+         +.|-+         +=.-|.+++.+.|.+++.-.
T Consensus        65 ~~miSP~Gq~~~v~~~~~~P~---~~~yV------GM---------VrREv---------FD~~LReRA~kaGAe~~~g~  117 (408)
T TIGR02023        65 ARMISPSGQEIAVEIKVDIPV---EDGYV------GM---------VRREV---------FDEYLRERAQKAGAELIEGL  117 (408)
T ss_pred             EEEECCCCCCEECCCEEECCC---CCCEE------EE---------EEHHH---------CCHHHHHHHHHHHHHHHHHH
T ss_conf             467777886100242024365---88667------77---------55144---------15789999876214766567


Q ss_pred             EEEEEEECCCC---CCEEEEEEEE-----CCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCC
Q ss_conf             56520001344---3012468980-----587089950672474157656543342106401444887887513653333
Q gi|254781043|r  176 FALDLIINSEG---CCVGVVAWQL-----ETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDM  247 (611)
Q Consensus       176 ~~~~Li~d~dG---~V~Gav~~~~-----~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~m  247 (611)
                      + +.|-.|.+|   .++ +.-.+.     .+++...+.++.||=|-|-.++.=...-.-+.+  .-.++|++-=.++-+-
T Consensus       118 f-~~~~~d~~GWds~~~-~~~~~~~G~k~ag~~~~~v~~~~VIGADGA~S~vAR~~~~~~~~--~~~viA~qEri~~p~~  193 (408)
T TIGR02023       118 F-KKLERDEDGWDSRVT-LQYREKDGKKEAGEEKKSVEADVVIGADGANSKVARKELGLPDN--LPKVIAYQERIKLPDE  193 (408)
T ss_pred             H-HHHCCCCCCCCCCEE-EEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC--HHHEEEHHHEECCCCC
T ss_conf             5-520156777755258-99876777512567777378988760447886588971875886--0230201120048886


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHH--HHHHHHCCCCCCCCCEEEEEE
Q ss_conf             222328884422014304566557808983268612554076510047520111568--899881788888887468861
Q gi|254781043|r  248 EFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM--MMEIREGRGVGKSKDHIHLYL  325 (611)
Q Consensus       248 Ef~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai--~~ei~~g~g~~~~~~~v~ld~  325 (611)
                      .-+.+.++                   +++        =|+  ..|++| |.=++..  -..+.=|-|+.+         
T Consensus       194 ~~~~y~e~-------------------~~d--------~~~--~g~VSP-DFYgW~FPk~dH~avG~Gt~P---------  234 (408)
T TIGR02023       194 SKMKYYEE-------------------LAD--------VYY--DGEVSP-DFYGWVFPKGDHIAVGTGTEP---------  234 (408)
T ss_pred             CCCCCCCC-------------------EEE--------EEE--CCEECC-CCCCCCCCCCCEEEEECCCCC---------
T ss_conf             56577887-------------------799--------998--880486-423020688777888327885---------


Q ss_pred             CCCCHHHHHHHHHHHHHHHH--HHCCCCCCCC--EEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf             11798999998537999997--6436786544--0675203310012342157715853778885332276034021220
Q gi|254781043|r  326 NHLDPAVLQERLPGISESAR--IFAGVDVTRD--PIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC  401 (611)
Q Consensus       326 ~~~~~~~l~~~~~~~~~~~~--~~~g~D~~~~--~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~  401 (611)
                        ...--+++....+.++..  ...+.-+.+|  |||..|--|+..+=                      |.-=+|++|.
T Consensus       235 --~h~~d~K~~~~~lr~~~GD~L~~~~tir~EaapIPm~Pr~~~~~~r----------------------~~~L~GDAAG  290 (408)
T TIGR02023       235 --THGFDIKQLQAALRRRAGDKLDGGKTIRREAAPIPMKPRPRWDSGR----------------------DVVLVGDAAG  290 (408)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCC----------------------CEEEECCCCC
T ss_conf             --6427899999999987302656183010026767755441000588----------------------6699813466


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             33566430476432222223215677556654202656676400235788863101037887136899987887665097
Q gi|254781043|r  402 ASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA  481 (611)
Q Consensus       402 ~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~  481 (611)
                      .=.|    -+|=+.-=++..|++|++...++++.....+  +...+.....++.+..     .+++.+.+-||++     
T Consensus       291 ~V~~----~SGEGIY~Am~sG~~aA~a~~E~l~~Gkk~~--~a~~L~~y~~~f~K~y-----~~~f~~L~~LQ~~-----  354 (408)
T TIGR02023       291 LVTP----ASGEGIYFAMKSGKMAAEAIVEALQSGKKAI--DATDLRKYEKKFMKLY-----GTTFRVLRVLQKV-----  354 (408)
T ss_pred             CEEC----CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHC-----CHHHHHHHHHHHH-----
T ss_conf             3344----3761688876310789999999984453252--4464478999987631-----5043466777432-----


Q ss_pred             EEEECHHHHHH
Q ss_conf             26875899999
Q gi|254781043|r  482 GVFRTQDSLSD  492 (611)
Q Consensus       482 gi~R~~~~L~~  492 (611)
                       .+||+...+.
T Consensus       355 -~Yrsd~~RE~  364 (408)
T TIGR02023       355 -YYRSDRRREK  364 (408)
T ss_pred             -HCCCCCCHHH
T ss_conf             -1388720247


No 212
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.01  E-value=0.0001  Score=49.44  Aligned_cols=133  Identities=17%  Similarity=0.194  Sum_probs=76.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             588989968999999999988--982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      -|+|||+|.|||..||-.+.+  +.+|.|+|+.+...  |    -|+-.++....-        |-++    -+|++..+
T Consensus         2 kI~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~d--T----fGwGVVfsD~tL--------~~l~----~~Dp~s~~   63 (770)
T PRK08255          2 RIVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYD--T----FGWGVVFSDATL--------GNLR----AADPVSAA   63 (770)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC--C----EEEEEECCHHHH--------HHHH----HCCHHHHH
T ss_conf             4999778758999999998658999747984279999--5----244687472666--------4555----43999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHHHHHCCCEEECCC
Q ss_conf             999988999999998699813279985510014641145678765640798666542-6678999999873123031131
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAILHTLYGQALKNNAEFFIEY  175 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i~~~L~~~~~~~gv~i~~~~  175 (611)
                      .+.++              |.+-++..+..+   |... ...|+.     ++  ..| +.|+..|.++|++.||++..++
T Consensus        64 ~i~~~--------------f~~Wddi~v~~~---g~~~-~~~Ghg-----F~--gi~R~~LL~iLq~Ra~~lGV~l~fe~  118 (770)
T PRK08255         64 AIGDA--------------FNHWDDIEVHFK---GRRI-RSGGHG-----FA--GIGRKRLLNILQARCEELGVKLVFET  118 (770)
T ss_pred             HHHHH--------------HCCCCCEEEEEC---CEEE-EECCCE-----EE--HHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             99997--------------478636699968---9079-966960-----66--47499999999999998398489326


Q ss_pred             EEEEEE-----ECCCCCCEEEEEEE
Q ss_conf             565200-----01344301246898
Q gi|254781043|r  176 FALDLI-----INSEGCCVGVVAWQ  195 (611)
Q Consensus       176 ~~~~Li-----~d~dG~V~Gav~~~  195 (611)
                      .+.++-     .|.| -|+++-++|
T Consensus       119 ~i~~~~~~~~~~daD-LVVaaDG~N  142 (770)
T PRK08255        119 EVPDDQAFALQYDAD-LVIASDGLN  142 (770)
T ss_pred             CCCCCCHHHHCCCCC-EEEECCCCC
T ss_conf             379721011104789-899878716


No 213
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.00  E-value=1.1e-05  Score=55.65  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCC
Q ss_conf             5889899689999999999889--829999868988521
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSH   55 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~   55 (611)
                      .|+|||+|+|||+||..++++|  .+|+|+||....+|.
T Consensus         2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~   40 (452)
T PRK11883          2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGK   40 (452)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEE
T ss_conf             599999878999999999964979978999889988103


No 214
>KOG0029 consensus
Probab=97.99  E-value=1.1e-05  Score=55.66  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             332310588989968999999999988982999986898852
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      ..-++.+|+|||+|+|||.||-.+.+.|.+|+|+|--...+|
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029          11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             467888389989857899999999975982599971477676


No 215
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.97  E-value=0.00051  Score=44.85  Aligned_cols=198  Identities=22%  Similarity=0.181  Sum_probs=100.8

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCC--CC-C--HHH---
Q ss_conf             3231058898996899999999998--89829999868988---52104-116534251--37899--99-9--999---
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMT--PD-S--WQW---   77 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~--~D-s--~~~---   77 (611)
                      .+.++||++||+|+-+.+-+.-++|  ...++.|+||..-.   .|+.. =|+-|.++.  +.+.+  +| +  +..   
T Consensus         6 ~~~~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~CELNYTp~~~dG~i~i~KA~~   85 (499)
T PRK05257          6 EESKTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEQADGSIDISKAVK   85 (499)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             88866689999528899999999970998748999924600545076655454402130221488776798370899999


Q ss_pred             ----------HHHHHHHHCCCCCCHHHH-H-----------HHHHHHHHHHHHHHH----CCCCCCCCCCC--CEEEECC
Q ss_conf             ----------999899845887799999-9-----------999988999999998----69981327998--5510014
Q gi|254781043|r   78 ----------HLYDTIKGSDWLGDVDAI-Q-----------YLAMEAPQSVYELEH----YGVPFSRNEAG--KIYQRPF  129 (611)
Q Consensus        78 ----------~~~Dt~~~g~~l~d~~lv-~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G--~~~~~~~  129 (611)
                                +..-.++. .-+.+|+-. .           .=++--..+.+.|..    -|+.|+.+.+-  ++..--.
T Consensus        86 Ine~Fe~SrQfWs~lv~~-g~l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al~~~~lF~~Mefsed~~~i~~W~PLvm  164 (499)
T PRK05257         86 INEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKASPLFAGMEFSEDPAQIKEWAPLMM  164 (499)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCHHC
T ss_conf             999999999999999975-8878968853568834788885878999999998743868788575479999986354300


Q ss_pred             CCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECC
Q ss_conf             6411456787656--407986665426678999999873-1230311315652000134430124689805870899506
Q gi|254781043|r  130 GGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA  206 (611)
Q Consensus       130 gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~A  206 (611)
                      -|..    ...++  -|+-+..|-.=-+|.+.|.+.+.+ .+++++.++.|++|-...||.= -+.+.|..+|+...++|
T Consensus       165 ~gR~----~~e~vAaTr~~~GTDVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a  239 (499)
T PRK05257        165 EGRD----PSEKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGTW-TVTVKDLKTGEKRTVRA  239 (499)
T ss_pred             CCCC----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCE-EEEEEECCCCCEEEEEE
T ss_conf             6999----898500583478754568999999999997589838993688756088899987-99999878897279982


Q ss_pred             CCEEEECCCCC
Q ss_conf             72474157656
Q gi|254781043|r  207 KLVVLATGGYG  217 (611)
Q Consensus       207 kaVILATGG~~  217 (611)
                      |-|-+..||.+
T Consensus       240 ~fVFiGAGG~a  250 (499)
T PRK05257        240 KFVFIGAGGGA  250 (499)
T ss_pred             CEEEECCCCHH
T ss_conf             56998888145


No 216
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105   Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=97.96  E-value=3.5e-05  Score=52.49  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHH--HCCCEEECCCEEEEEEECC------CCCCEEEEEEEECCCEEEEECCCCEEEECC
Q ss_conf             667899999987--3123031131565200013------443012468980587089950672474157
Q gi|254781043|r  154 HAILHTLYGQAL--KNNAEFFIEYFALDLIINS------EGCCVGVVAWQLETGEIHRFSAKLVVLATG  214 (611)
Q Consensus       154 ~~i~~~L~~~~~--~~gv~i~~~~~~~~Li~d~------dG~V~Gav~~~~~~G~~~~i~AkaVILATG  214 (611)
                      .+|+.+|.+-+.  ..|+++..+..+.++.+++      ++++.++.   ..+|  ..+.|.+||.+.=
T Consensus       227 ~al~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~---~~~~--~~~~ad~VvSnAD  290 (526)
T TIGR02734       227 GALVAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVATGGRATAVH---LADG--ERLDADAVVSNAD  290 (526)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEECCEEEEEE---CCCC--EEEEEEEEEECCC
T ss_conf             89999999999746874699745531144621674233165243455---0654--0331127887487


No 217
>KOG2960 consensus
Probab=97.94  E-value=1.1e-05  Score=55.89  Aligned_cols=118  Identities=27%  Similarity=0.368  Sum_probs=71.8

Q ss_pred             EECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             1058898996899999999998--89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      +.||+|||+|.|||+||...+.  ..++|.+||..-..+|+++.         +.+       .|.-++           
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL---------GGQ-------LFSAMv-----------  128 (328)
T KOG2960          76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL---------GGQ-------LFSAMV-----------  128 (328)
T ss_pred             CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC---------CCH-------HHHHHH-----------
T ss_conf             04569987786654146663036998469999700369974340---------101-------545654-----------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCEEEC
Q ss_conf             9999998899999999869981327998551001464114567876564079866654266789999998-731230311
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAEFFI  173 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~i~~  173 (611)
                      +|.      .+--+|.++|+|++  +.|.|...+                  |++     -...+...++ ...+|++++
T Consensus       129 vRK------PAhLFL~EigvpYe--degdYVVVK------------------HAA-----LFtSTvmsk~LalPNVKLFN  177 (328)
T KOG2960         129 VRK------PAHLFLQEIGVPYE--DEGDYVVVK------------------HAA-----LFTSTVMSKVLALPNVKLFN  177 (328)
T ss_pred             HCC------HHHHHHHHHCCCCC--CCCCEEEEE------------------EHH-----HHHHHHHHHHHCCCCCEEEC
T ss_conf             247------28888887389734--678779995------------------078-----89999999986278600001


Q ss_pred             CCEEEEEEECC--CC--CCEEEE
Q ss_conf             31565200013--44--301246
Q gi|254781043|r  174 EYFALDLIINS--EG--CCVGVV  192 (611)
Q Consensus       174 ~~~~~~Li~d~--dG--~V~Gav  192 (611)
                      -+.+.|||+..  +|  ||.|++
T Consensus       178 AtavEDLivk~g~~g~~rvaGVV  200 (328)
T KOG2960         178 ATAVEDLIVKPGEKGEVRVAGVV  200 (328)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf             01135550036867736887897


No 218
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295   This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.94  E-value=0.00061  Score=44.36  Aligned_cols=165  Identities=19%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCC-CCHHCCCCEEEECCCCCCCCHH--HHHHHHHHHCCCCC
Q ss_conf             5889899689999999999889-----82999986898852-1041165342513789999999--99998998458877
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRS-HTVAAQGGIAASLANMTPDSWQ--WHLYDTIKGSDWLG   90 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g-~s~~A~GGi~a~~~~~~~Ds~~--~~~~Dt~~~g~~l~   90 (611)
                      ||+|||||+.|++-|+++...+     .+|.|||+..+... ++.     +   +  .+.-+..  .+-..+++.= |+-
T Consensus         1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~-----~---f--kD~R~~AlS~GS~~~L~~l-Gll   69 (425)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPG-----F---F--KDARSLALSYGSKQILEKL-GLL   69 (425)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-----C---C--CCCHHHHHHHHHHHHHHHC-CCC
T ss_conf             978885658999999998506775576158986565744246864-----2---3--5650468768999999853-863


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf             9999999999889999999986-998132799855100146411456787656407986665426-----6789999998
Q gi|254781043|r   91 DVDAIQYLAMEAPQSVYELEHY-GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGH-----AILHTLYGQA  164 (611)
Q Consensus        91 d~~lv~~~~~~a~~~i~~Le~~-Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~-----~i~~~L~~~~  164 (611)
                                + |.....|+.. ..|..+   -.+..+...|.+.....-       +.-+.-|.     .+..+|.+++
T Consensus        70 ----------q-Ph~W~~l~~~ratpI~~---IhVSD~g~fG~~~~~~~~-------~~~~aLGyVV~~~~~~~~L~~~l  128 (425)
T TIGR01984        70 ----------Q-PHLWPKLAPFRATPIKD---IHVSDQGHFGATELRASE-------FGLPALGYVVELADLGQALLKRL  128 (425)
T ss_pred             ----------C-HHHHHHHHCCCCCCCCE---EEEEECCCEEEEEECHHH-------CCCCCCCEEEEHHHHHHHHHHHH
T ss_conf             ----------3-12578860136787751---688645830013412536-------28764531421789999999998


Q ss_pred             HHC-CCEEECCCEEEEEEECCCC----------CCEEEEEEEE-CCCE--EEEECCCCEEEECCCC
Q ss_conf             731-2303113156520001344----------3012468980-5870--8995067247415765
Q gi|254781043|r  165 LKN-NAEFFIEYFALDLIINSEG----------CCVGVVAWQL-ETGE--IHRFSAKLVVLATGGY  216 (611)
Q Consensus       165 ~~~-gv~i~~~~~~~~Li~d~dG----------~V~Gav~~~~-~~G~--~~~i~AkaVILATGG~  216 (611)
                      .+. .|+++.-..+.++..+.++          .+.-+.+ -. .+++  +..+.|+=||.|-||.
T Consensus       129 ~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~-~lt~~~~rhP~~l~~~Lli~ADGGl  193 (425)
T TIGR01984       129 AKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEV-TLTDNEQRHPLQLQAKLLIAADGGL  193 (425)
T ss_pred             HHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEE-EEECCCCCCCEEEEEEEEEEECCCC
T ss_conf             6256651125753211210578630005666655103578-8830887564055530889855863


No 219
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.86  E-value=2.2e-05  Score=53.82  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=40.8

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             2276034021220335664304764322222232156775566542026566764002357888631
Q gi|254781043|r  389 FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFD  455 (611)
Q Consensus       389 ~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~  455 (611)
                      .|||||-||-..  |.-|        -.|+...|-+||.+||..+++..+.........-.....+.
T Consensus       331 ~~~~Lf~AGQIn--Gt~G--------YeEAAAqGliAGiNAa~~~~Gk~p~~~p~~t~~GaL~~~i~  387 (434)
T PRK05335        331 SRPNLFFAGQIT--GVEG--------YVESAASGLLAGINAARLALGKEPVVPPPTTALGALLNYIT  387 (434)
T ss_pred             CCCCCEECCCCC--CCHH--------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             879827711336--7418--------89999988999999999966999989880318999999844


No 220
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.84  E-value=3e-05  Score=52.91  Aligned_cols=49  Identities=24%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC---CCCEEE
Q ss_conf             1058898996899999999998898299998689885210411---653425
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA---QGGIAA   65 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A---~GGi~a   65 (611)
                      .||.||||+|++|+..|-.|++.|.+|++|||-+-.+|++.-.   +-||..
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlv   52 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILV   52 (374)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf             9758998776268899999997598799996256678754343477777588


No 221
>TIGR00275 TIGR00275 conserved hypothetical protein TIGR00275; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases..
Probab=97.84  E-value=0.00015  Score=48.38  Aligned_cols=187  Identities=17%  Similarity=0.162  Sum_probs=119.1

Q ss_pred             EEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             89899689999999999889--8299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   21 VVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        21 lVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      +|||+|.+|+.+++.+++.+  .+|++++.+........+..||...... .. -++..++...-++|.+ +...+.+ +
T Consensus         1 ~~~g~g~~g~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~ggg~c~~~~-~~-~~p~~~~~~~p~gg~~-~~~~~~~-~   76 (411)
T TIGR00275         1 IVVGGGAAGLFCAANCARLGPEGRVLLLDNGKKPGRKVLLSGGGRCNFTN-LC-VDPGAYLSQNPRGGHF-LKGALAR-F   76 (411)
T ss_pred             CEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHEEECCCCCEEEEE-EE-CCCHHHHHCCCCCCHH-HHHHHHH-C
T ss_conf             91236301356666654226554068862574100000112785100000-10-0504665237765225-6656653-1


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEE
Q ss_conf             99889999999986998132799855100146411456787656407986665426678999999873123031131565
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFAL  178 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~  178 (611)
                        ...+.+.|....|+.+.....|.+..                     +.+ ....++..|...+.+.++++..+..+.
T Consensus        77 --~~~~~~~~~~~~g~~~~~~~~g~~~p---------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (411)
T TIGR00275        77 --TPWDFIALVGAEGVALHEKALGQLFP---------------------CDD-GAGQIVDCLLSECDKGGVELRLRSEVL  132 (411)
T ss_pred             --CCHHHHHHHHHCCCEEHHHHCCCEEC---------------------CCC-CHHHHHHHHHHHHHHCCCEEEECCHHH
T ss_conf             --32135555531142000110253103---------------------566-446899998875532262132100233


Q ss_pred             EEEECCCC-CCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCC
Q ss_conf             20001344-301246898058708995067247415765654334210640144488788751365333
Q gi|254781043|r  179 DLIINSEG-CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD  246 (611)
Q Consensus       179 ~Li~d~dG-~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~  246 (611)
                      .+-..+.| ++.=+.     +-......++..|++|||..-.-      .+.+--|+.++.+.|..+.-
T Consensus       133 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~------~g~~p~g~~~~~~~g~~~~~  190 (411)
T TIGR00275       133 GLEKLENGEKVRFTL-----QLNGTVWGCEGLIIATGGLSLPG------LGANPFGYRWAEQFGLPVLP  190 (411)
T ss_pred             HHHHHCCCCEEEEEE-----ECCCCEEECCCCEEECCCCCCCC------CCCCCCCHHHHHHCCCCCCC
T ss_conf             444302564044433-----00310000023123136520012------57763211446560861225


No 222
>KOG2614 consensus
Probab=97.81  E-value=4.1e-05  Score=52.05  Aligned_cols=39  Identities=28%  Similarity=0.441  Sum_probs=35.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             105889899689999999999889829999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~   55 (611)
                      +=+|+|||+|++||.+|+.++++|.+|+|+|+....|+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614           2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE   40 (420)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf             974899888389899999998758748998621465558


No 223
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=97.81  E-value=0.00015  Score=48.29  Aligned_cols=176  Identities=22%  Similarity=0.242  Sum_probs=89.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH-HHHH
Q ss_conf             588989968999999999988982999986898852104116534251378999999999998998458877999-9999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD-AIQY   97 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~-lv~~   97 (611)
                      -|-|||||.|||.||-.+.++|-.|+|.||....+|        .   +-+..|+              +.-|.. .|. 
T Consensus       153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GG--------L---L~YGIPn--------------mKLdK~e~v~-  206 (517)
T TIGR01317       153 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGG--------L---LRYGIPN--------------MKLDKEEIVD-  206 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC--------C---CCCCCCC--------------CCCCHHHHHH-
T ss_conf             689975675799999998535883899743678886--------3---0248887--------------4337388999-


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCC-C------CEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCC
Q ss_conf             999889999999986998132799-8------55100146411456787656407986665426678999999873-123
Q gi|254781043|r   98 LAMEAPQSVYELEHYGVPFSRNEA-G------KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNA  169 (611)
Q Consensus        98 ~~~~a~~~i~~Le~~Gv~f~r~~~-G------~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv  169 (611)
                            .+|+.|.+=|+.|..+-. |      ++..-..---+. ...-..+.=.++|.+.|   .-+=|-=.=++ .||
T Consensus       207 ------RRi~~l~aEG~~FvtnteiGdWdenskitnlsk~di~~-~~L~~~fDAVVLa~Ga~---~pRDLpI~GREL~Gi  276 (517)
T TIGR01317       207 ------RRIDLLEAEGVDFVTNTEIGDWDENSKITNLSKKDISA-DELKEDFDAVVLATGAT---KPRDLPIPGRELKGI  276 (517)
T ss_pred             ------HHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCH-HHHHHHCCEEEEECCCC---CCCCCCCCCCCCCCC
T ss_conf             ------99999874784201783004653444200022342687-99871469389833788---601035577664660


Q ss_pred             EEECCCEEEEEEECCCCCCE-EEEEEEECCCE-EEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCC-CCC
Q ss_conf             03113156520001344301-24689805870-8995067247415765654334210640144488788751365-333
Q gi|254781043|r  170 EFFIEYFALDLIINSEGCCV-GVVAWQLETGE-IHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLP-LQD  246 (611)
Q Consensus       170 ~i~~~~~~~~Li~d~dG~V~-Gav~~~~~~G~-~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~-l~~  246 (611)
                           +++-++|..+ .||. +=-..+ .+|+ ++.++-|-||+==||=+        ..+|-|    =++|.||. +.+
T Consensus       277 -----H~AMefL~~~-tk~~l~~~~k~-~~GqP~I~akGK~VvvIGGGDT--------G~DCvG----Ts~RhGA~sV~q  337 (517)
T TIGR01317       277 -----HFAMEFLTLN-TKALLDDDFKD-KDGQPFIKAKGKKVVVIGGGDT--------GADCVG----TSLRHGAASVHQ  337 (517)
T ss_pred             -----HHHHHHHHHH-HHHHCCCCCCC-CCCCCCEEECCCEEEEECCCCC--------CCHHHH----HHHHHHHHHHHH
T ss_conf             -----3786554675-48560885366-6788735422867899757875--------622456----323554355230


Q ss_pred             CCC
Q ss_conf             322
Q gi|254781043|r  247 MEF  249 (611)
Q Consensus       247 mEf  249 (611)
                      .|-
T Consensus       338 FE~  340 (517)
T TIGR01317       338 FEI  340 (517)
T ss_pred             CCC
T ss_conf             256


No 224
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533    Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=97.79  E-value=0.00013  Score=48.74  Aligned_cols=55  Identities=24%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCC--EEEEECC-CCEEEECCCCC
Q ss_conf             9999873123031131565200013443012468980587--0899506-72474157656
Q gi|254781043|r  160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG--EIHRFSA-KLVVLATGGYG  217 (611)
Q Consensus       160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G--~~~~i~A-kaVILATGG~~  217 (611)
                      |.....+.+++|..++++.+|+.|+ +|++||...  +.|  .....+| |=|||+.|-+.
T Consensus       205 L~pA~kRpNle~~t~af~~ki~feg-~ratGVe~~--~ggst~~e~~~ankEVilsagain  262 (540)
T TIGR01810       205 LDPALKRPNLEVRTRAFVDKIVFEG-KRATGVEFK--KGGSTIKERVKANKEVILSAGAIN  262 (540)
T ss_pred             HHHHHCCCCHHHHHHHHHEEEEECC-CEEEEEEEE--CCCCCCCCEECCCCEEEEECCHHH
T ss_conf             4466407872001422220003308-837998882--289733000012445788334121


No 225
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=97.76  E-value=0.0016  Score=41.60  Aligned_cols=60  Identities=10%  Similarity=0.124  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCC--CCCEEEEEEEECCCEEEEECC--CCEEEECCC
Q ss_conf             6789999998731230311315652000134--430124689805870899506--724741576
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSE--GCCVGVVAWQLETGEIHRFSA--KLVVLATGG  215 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~d--G~V~Gav~~~~~~G~~~~i~A--kaVILATGG  215 (611)
                      .|+..|.+-++.+||++..++.|++|.++.+  .+++-.+.+. ++|+-..|.=  .-+|+.|-|
T Consensus       208 Sii~Pl~~~L~~~GV~F~~~t~Vtdi~~~~~~~~~~~t~i~~~-~~g~~~~i~l~~~DlVfvTnG  271 (500)
T pfam06100       208 SLVLPMIKYLKSHGVDFEYGTKVENIEVDISDSKKAAKKIAMT-RNGKEESIELTEDDLVFVTNG  271 (500)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCEEEEEEEEE-ECCCEEEEECCCCCEEEEECC
T ss_conf             7999999999978988978988999999627997388999999-489676775388888999788


No 226
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.71  E-value=6.2e-05  Score=50.87  Aligned_cols=156  Identities=18%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             5889899689999999999889829999868988521--04116534251378999999999998998458877999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH--TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~--s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      +|.|||+|+||++||..++++|.+|+|+||+.-.+|-  |.--.||        .-|.-..+    +|     ..-++..
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g--------~~DhGAqY----fk-----~~~~~F~   65 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG--------RFDHGAQY----FK-----PRDELFL   65 (331)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHEECCCCC--------CCCCCCEE----EC-----CCCHHHH
T ss_conf             4799756368899999998669579999738875531100005786--------53455504----15-----7865799


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
                      .+++.       +.+-|+.-. ...+.+..+  ++.+..    ...++. |    +|..-+.+|.+ .+....+|..++.
T Consensus        66 ~~Ve~-------~~~~glV~~-W~~~~~~~~--~~~~~~----~~d~~p-y----vg~pgmsalak-~LAtdL~V~~~~r  125 (331)
T COG3380          66 RAVEA-------LRDDGLVDV-WTPAVWTFT--GDGSPP----RGDEDP-Y----VGEPGMSALAK-FLATDLTVVLETR  125 (331)
T ss_pred             HHHHH-------HHHCCCEEE-CCCCCCCCC--CCCCCC----CCCCCC-C----CCCCCHHHHHH-HHHCCCHHHHHHH
T ss_conf             99999-------986785430-351110113--688899----888776-2----36743679999-8724504344223


Q ss_pred             EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             65200013443012468980587089950672474157656
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ++++-.. ++    -.-+...+|. ....++.||||-=-..
T Consensus       126 Vt~v~~~-~~----~W~l~~~~g~-~~~~~d~vvla~PAPQ  160 (331)
T COG3380         126 VTEVART-DN----DWTLHTDDGT-RHTQFDDVVLAIPAPQ  160 (331)
T ss_pred             HHHHEEC-CC----EEEEEECCCC-CCCCCCEEEEECCCCC
T ss_conf             1431233-87----1689846887-6455343899368875


No 227
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.67  E-value=0.00029  Score=46.50  Aligned_cols=69  Identities=25%  Similarity=0.374  Sum_probs=49.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      -|-|||||.|||+||-.++..|.+|.|.|+.+..+        |+   +.+..|.              |.--.+++.  
T Consensus       308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~G--------Gv---L~YGIPe--------------FRLPK~IV~--  360 (944)
T PRK12779        308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLG--------GV---LRYGIPE--------------FRLPNQLID--  360 (944)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CE---EEECCCC--------------CCCCHHHHH--
T ss_conf             67998857689999999997799339994478788--------55---8955876--------------668789999--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             998899999999869981327
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRN  119 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~  119 (611)
                           ..|+.|+.+||.|..+
T Consensus       361 -----~EI~~l~~lGV~f~~n  376 (944)
T PRK12779        361 -----DVVEKIKLLGGRFVKN  376 (944)
T ss_pred             -----HHHHHHHHCCEEEEEC
T ss_conf             -----9999999678399978


No 228
>PRK09897 hypothetical protein; Provisional
Probab=97.65  E-value=0.0014  Score=41.93  Aligned_cols=164  Identities=19%  Similarity=0.236  Sum_probs=94.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             5889899689999999999889--82999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      -|-|||+|..|+..--++-+.+  .+|.|.||....+.+.-|+.+           +.-..|+..+  ++..+  |.+..
T Consensus         3 rIAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e-----------~ns~~mlaNI--as~EI--Ppi~~   67 (535)
T PRK09897          3 KIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDE-----------ENSKMMLANI--ASIEI--PPIYC   67 (535)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC-----------CCHHHHHHHH--HCCCC--CCCHH
T ss_conf             079966786249999998646998269998215667789986854-----------4558887503--10558--85135


Q ss_pred             HHHHHHH-HHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHH---HHHHHHHHHHHCC--CE
Q ss_conf             9999889-9999999869981327998551001464114567876564079866654266---7899999987312--30
Q gi|254781043|r   97 YLAMEAP-QSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHA---ILHTLYGQALKNN--AE  170 (611)
Q Consensus        97 ~~~~~a~-~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~---i~~~L~~~~~~~g--v~  170 (611)
                      .|.+.-. .--++|++||+.=.     .+..|.|            .||+..     |.-   -...|.+++++.|  |.
T Consensus        68 t~~~WL~~q~~~~L~~~~id~~-----~l~~rqf------------lPRiLl-----GeYl~~QF~~Lve~a~~~G~~i~  125 (535)
T PRK09897         68 TYLEWLQKQEASHLQRYGVKKE-----TLHDRQF------------LPRILL-----GEYFRDQFLRLVDQARQQKFAVA  125 (535)
T ss_pred             HHHHHHHHCCHHHHHHCCCCHH-----HCCCCCE------------EHHHHH-----HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             6999987388878987199832-----2641010------------048888-----89999999999999986596699


Q ss_pred             EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC-------CCCCCCCCC
Q ss_conf             3113156520001344301246898058708995067247415765-------654334210
Q gi|254781043|r  171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY-------GRAYFSATS  225 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~-------~~ly~~~t~  225 (611)
                      |+..+.|+|+.-..+|...     ...++ .....-..||||||=.       .+-|+.|-.
T Consensus       126 Vh~~~~VtDi~~~~~gv~l-----~~~~~-~~~~~FD~vVIaTGH~WP~~~e~~~~YF~SPw  181 (535)
T PRK09897        126 VYESCQVTDLQITNAGVML-----ATNQD-LPSETFDLAVIATGHVWPDEEEATRTYFPSPW  181 (535)
T ss_pred             EEECCEEEEEEECCCCEEE-----EECCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             9757666764436995599-----83378-87643207998079879987767766678999


No 229
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.65  E-value=0.002  Score=41.00  Aligned_cols=60  Identities=13%  Similarity=0.165  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCC---CCEEEEEEEECCCEEEEECC--CCEEEECCCC
Q ss_conf             67899999987312303113156520001344---30124689805870899506--7247415765
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSEG---CCVGVVAWQLETGEIHRFSA--KLVVLATGGY  216 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG---~V~Gav~~~~~~G~~~~i~A--kaVILATGG~  216 (611)
                      .|+..|.+-++.+||++..++.|+++.++.++   +|.+....  ++|+-..|.=  .-+|+.|-|.
T Consensus       227 Sii~Pl~~~L~~~GV~F~~~t~Vtdi~~~~~~~~~~vt~i~~~--~~g~~~~i~l~~~DlVfvTnGS  291 (577)
T PRK13977        227 SLVLPLIKYLEEHGVDFEYGTKVTDIDFDITGGKKTATAIHLT--DDGKEESIDLTEDDLVFVTNGS  291 (577)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCEEEEEEEEE--CCCCEEEEECCCCCEEEEECCC
T ss_conf             7999999999987987977998999898538997689999998--1896677761888889997886


No 230
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.65  E-value=8.6e-05  Score=49.93  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=31.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Q ss_conf             5889899689999999999889--82999986898852
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRS   54 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g   54 (611)
                      -|+|||+|+|||+||.++++.+  .+|.|+||.+..+|
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG   39 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG   39 (444)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf             39998782888999999998589986799834887786


No 231
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.65  E-value=8.4e-05  Score=49.98  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=32.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             588989968999999999988982999986898852
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      -|.|+|+|+|||.||.+++++|.+|+|.|..+..+|
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             289974627888999999868985399842676686


No 232
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.64  E-value=9.3e-05  Score=49.69  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf             5889899689999999999889-8299998689885
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTR   53 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~   53 (611)
                      .|+|||+|+|||++|+.++++| .+|.|+|+.+..+
T Consensus         2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             899999448999999999853999889994289888


No 233
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.62  E-value=8.9e-05  Score=49.84  Aligned_cols=45  Identities=33%  Similarity=0.464  Sum_probs=36.4

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCHHC
Q ss_conf             23105889899689999999999889829999868988--5210411
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT--RSHTVAA   59 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~--~g~s~~A   59 (611)
                      ...+||||||+|+|||.||.+..+.|.+|+|+|-....  |+.+..+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEC
T ss_conf             88886899897268889999876468189998646776764677750


No 234
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59  E-value=0.0012  Score=42.40  Aligned_cols=39  Identities=10%  Similarity=0.120  Sum_probs=30.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCC
Q ss_conf             0588989968999999999988---98299998689885210
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEK---GFKTACITKVFPTRSHT   56 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~---G~~V~lieK~~~~~g~s   56 (611)
                      ++|.|||+|.+|++.|.++.+.   ..+|.|+|+.+-.+.+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi   43 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI   43 (474)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf             518997886579999999984788777567853555457875


No 235
>KOG0404 consensus
Probab=97.59  E-value=0.00033  Score=46.11  Aligned_cols=293  Identities=21%  Similarity=0.312  Sum_probs=139.5

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
                      +.|...|.|||||.|+..|||-|+++.++-+|.|-...         +||+ ..++..-                     
T Consensus         5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~---------~~i~-pGGQLtT---------------------   53 (322)
T KOG0404           5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA---------NGIA-PGGQLTT---------------------   53 (322)
T ss_pred             CEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEC---------CCCC-CCCEEEE---------------------
T ss_conf             41220389983580677789997650267568811111---------6868-8863456---------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
                                               +    .....|+|.          |     ..-+|..|+..|.++..+.|.+++.
T Consensus        54 -------------------------T----T~veNfPGF----------P-----dgi~G~~l~d~mrkqs~r~Gt~i~t   89 (322)
T KOG0404          54 -------------------------T----TDVENFPGF----------P-----DGITGPELMDKMRKQSERFGTEIIT   89 (322)
T ss_pred             -------------------------E----ECCCCCCCC----------C-----CCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf             -------------------------5----201348999----------7-----5456688999999888751646541


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC-CCCCCCCCCCEECCHHHHHHHHHCCC---CCCCCC
Q ss_conf             31565200013443012468980587089950672474157656-54334210640144488788751365---333322
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG-RAYFSATSAHTCTGDGAGMVARAGLP---LQDMEF  249 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~-~ly~~~t~~~~~tGdG~~mA~~aGa~---l~~mEf  249 (611)
                      ++. .++-.  .+++--++.   .   -..++|++||+|||--+ +|+.+.      +|++.  -|.-|..   +-|- +
T Consensus        90 EtV-skv~~--sskpF~l~t---d---~~~v~~~avI~atGAsAkRl~~pg------~ge~~--fWqrGiSaCAVCDG-a  151 (322)
T KOG0404          90 ETV-SKVDL--SSKPFKLWT---D---ARPVTADAVILATGASAKRLHLPG------EGEGE--FWQRGISACAVCDG-A  151 (322)
T ss_pred             EEH-HHCCC--CCCCEEEEE---C---CCCEEEEEEEEECCCCEEEEECCC------CCCCH--HHHCCCCHHHCCCC-C
T ss_conf             002-22223--689769884---3---772453069992163012465478------77525--77636405312367-6


Q ss_pred             CC-C--CCCCCCCCEEECCCCCCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCE-EHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             23-2--88844220143045665578089832686--125540765100475201-115688998817888888874688
Q gi|254781043|r  250 VQ-F--HPTGIYGAGCLITEGARGEGGYLVNSKGE--RFMERYAPSAKDLASRDV-VSRCMMMEIREGRGVGKSKDHIHL  323 (611)
Q Consensus       250 ~q-f--hPt~~~~~~~l~~~~~rg~G~~l~n~~Ge--rf~~~y~~~~~el~~rd~-~s~ai~~ei~~g~g~~~~~~~v~l  323 (611)
                      .. |  .|+++.+-|               ++.-|  .|+.+|...---+.-||. .++-||.+-.+    .+..-.|..
T Consensus       152 apifrnk~laVIGGG---------------DsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~----~npnI~v~~  212 (322)
T KOG0404         152 APIFRNKPLAVIGGG---------------DSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAE----KNPNIEVLY  212 (322)
T ss_pred             CHHHCCCEEEEECCC---------------HHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHH----CCCCEEEEE
T ss_conf             521158745998586---------------7887899988741437999997124467789999875----399769993


Q ss_pred             EECCCCHHHHHHHHHH--HHHHHHHHCCCCCCC-CEEEE---------ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             6111798999998537--999997643678654-40675---------20331001234215771585377888533227
Q gi|254781043|r  324 YLNHLDPAVLQERLPG--ISESARIFAGVDVTR-DPIPV---------IPTVHYNMGGIPTNYWGEVLDANSKNPERFAP  391 (611)
Q Consensus       324 d~~~~~~~~l~~~~~~--~~~~~~~~~g~D~~~-~~i~v---------~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~  391 (611)
                      .     ...+ +.+..  ..+..+. ..++-.. .-+||         .|+-.+.-|.+..|..|-++-..+. ..|+||
T Consensus       213 n-----t~~~-ea~gd~~~l~~l~i-kn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgt-s~Tsvp  284 (322)
T KOG0404         213 N-----TVAV-EALGDGKLLNGLRI-KNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGT-SLTSVP  284 (322)
T ss_pred             C-----HHHH-HHCCCCCCCCCEEE-EECCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEECCCCEEEECCCC-CCCCCC
T ss_conf             1-----1220-02067140243698-74144750132024069971578266674273421367508962686-445565


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             6034021220335664304764322222232156775566542
Q gi|254781043|r  392 GLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID  434 (611)
Q Consensus       392 GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~  434 (611)
                      |+||||++ |-.   -.|-.    ..+.-.|-+|+-.|-+|..
T Consensus       285 G~FAAGDV-qD~---kyRQA----vTaAgsGciaaldAe~yL~  319 (322)
T KOG0404         285 GVFAAGDV-QDK---KYRQA----VTAAGSGCIAALDAERYLT  319 (322)
T ss_pred             CEEECCCC-CHH---HHHHH----HHHHCCCHHHHHHHHHHHH
T ss_conf             24531643-127---88998----8663353465404887743


No 236
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.57  E-value=0.00012  Score=48.96  Aligned_cols=33  Identities=36%  Similarity=0.484  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf             588989968999999999988--982999986898
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFP   51 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~   51 (611)
                      ||+|||+|.|||+-|.++.+.  +.+|+|||+.+-
T Consensus         1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~   35 (374)
T pfam05834         1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPG   35 (374)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             98999952999999999974089981999978988


No 237
>KOG2665 consensus
Probab=97.51  E-value=0.00091  Score=43.21  Aligned_cols=180  Identities=22%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCC-CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             332310588989968999999999988--9829999868988521-0411653425137899999999999899845887
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSH-TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWL   89 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~-s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l   89 (611)
                      +....||++|||+|+-||..|-++.=+  +++|+|+||.....-+ |.--+|-|-|-.... +.|...-+        -.
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~-P~SLKAkl--------CV  114 (453)
T KOG2665          44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYK-PGSLKAKL--------CV  114 (453)
T ss_pred             CCCCCCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEEEEEEEEC-CCCCCHHH--------HH
T ss_conf             4456554799888432225567776317872577540001021551256665056434417-76600011--------03


Q ss_pred             CCHHHHHHHHHH------------------HHHHHHHHHHCC----CCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf             799999999998------------------899999999869----9813279985510014641145678765640798
Q gi|254781043|r   90 GDVDAIQYLAME------------------APQSVYELEHYG----VPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCA  147 (611)
Q Consensus        90 ~d~~lv~~~~~~------------------a~~~i~~Le~~G----v~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~  147 (611)
                      --.+|.+.||++                  -...++.|.+.|    |+=-|--+|.-..+.           .++-|.+-
T Consensus       115 ~G~~LlY~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~-----------EP~crgvk  183 (453)
T KOG2665         115 EGRELLYEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEM-----------EPYCRGVK  183 (453)
T ss_pred             CCHHHHHHHHHHCCCCHHHCCEEEEEECHHHCCHHHHHHHHHHHCCCCCEEEECCCHHHHC-----------CHHHHHHH
T ss_conf             4299999985240797345063899717211503899997652259997065312113331-----------73554446


Q ss_pred             E--CCCCC----HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCC-EEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             6--66542----66789999998731230311315652000134430-124689805870899506724741576
Q gi|254781043|r  148 A--ADRTG----HAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC-VGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       148 ~--~d~tG----~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V-~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      +  .+.||    ..++..+.+.-...|.+++++..+..+-.+.++.. .-+++   .+|+...++.|.||-++|=
T Consensus       184 Al~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv---~ngk~ee~r~~~~vtc~gl  255 (453)
T KOG2665         184 ALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVV---LNGKGEEKRTKNVVTCAGL  255 (453)
T ss_pred             HHCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEECCCHHCCCCCCCCCEEE---ECCCCCEEEEEEEEEECCC
T ss_conf             54488766043578999998889874541215641012010367888886699---4585522577678873363


No 238
>KOG1399 consensus
Probab=97.51  E-value=0.00016  Score=48.17  Aligned_cols=146  Identities=20%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      .-+|.|||+|.|||.+|..+.++|.+|+++|+....+|-=.+        ..+.. + ...-+++.++            
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y--------~~~~~-~-~~ss~Y~~l~------------   63 (448)
T KOG1399           6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY--------TENVE-V-VHSSVYKSLR------------   63 (448)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEE--------CCCCC-C-CCCCHHHHHH------------
T ss_conf             785489785668889999998779983699705874545860--------57656-5-5432434210------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC--EEECC
Q ss_conf             9999889999999986998132799855100146411456787656407986665426678999999873123--03113
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNA--EFFIE  174 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv--~i~~~  174 (611)
                         -+.++.+-  .--.+||.-+                      .++..+    +-.++..-|..-+...++  .+..+
T Consensus        64 ---tn~pKe~~--~~~dfpf~~~----------------------~~~~~p----~~~e~~~YL~~yA~~F~l~~~i~f~  112 (448)
T KOG1399          64 ---TNLPKEMM--GYSDFPFPER----------------------DPRYFP----SHREVLEYLRDYAKHFDLLKMINFN  112 (448)
T ss_pred             ---CCCCHHHH--CCCCCCCCCC----------------------CCCCCC----CHHHHHHHHHHHHHHCCHHHHEEEC
T ss_conf             ---46884442--5799897545----------------------711178----8889999999998735834626734


Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             1565200013443012468980587089950672474157656
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      +.++.+-...+|+=... ..+..++ ....-+++||+|||=+.
T Consensus       113 ~~v~~v~~~~~gkW~V~-~~~~~~~-~~~~ifd~VvVctGh~~  153 (448)
T KOG1399         113 TEVVRVDSIDKGKWRVT-TKDNGTQ-IEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             CCEEEEEECCCCCEEEE-EECCCCC-EEEEEEEEEEECCCCCC
T ss_conf             65799840567741689-8148864-05899638999556768


No 239
>PRK04965 nitric oxide reductase; Provisional
Probab=97.46  E-value=0.0037  Score=39.25  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC
Q ss_conf             5889899689999999999889--8299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~   50 (611)
                      -|+|||+|+||++||-++.+.+  .+|+|+++.+
T Consensus         4 ~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~   37 (378)
T PRK04965          4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (378)
T ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             9999988299999999997119498699998999


No 240
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231   The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=97.43  E-value=0.0011  Score=42.72  Aligned_cols=191  Identities=21%  Similarity=0.213  Sum_probs=99.0

Q ss_pred             ECEEEECCCHHHHHHHHHHH--HCCCCEEEEECCCCC--CCCCHH--CCCCEEEE--CCCCCC------C---------C
Q ss_conf             05889899689999999999--889829999868988--521041--16534251--378999------9---------9
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMA--EKGFKTACITKVFPT--RSHTVA--AQGGIAAS--LANMTP------D---------S   74 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~--e~G~~V~lieK~~~~--~g~s~~--A~GGi~a~--~~~~~~------D---------s   74 (611)
                      +|||-||+|+=--+=++=++  |...+.+|||+....  .|++-|  |+.|.+|.  +.+.+.      |         .
T Consensus         1 ~DvvLvGAGIMSATLGvLLk~LeP~w~~~l~Erld~~A~ESS~pWNNAGTGHSALCELNYtP~~~dG~idi~kAv~ine~   80 (487)
T TIGR01320         1 TDVVLVGAGIMSATLGVLLKELEPSWEITLIERLDAVALESSNPWNNAGTGHSALCELNYTPEVADGSIDIAKAVGINEQ   80 (487)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
T ss_conf             96788656166899999997309995389998607745466766001120136876422478876782653556220114


Q ss_pred             ---HHHHHHHHHHHCCCCCCHHH----H--HHHHHHHHHHHHHHHH-----------CCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             ---99999989984588779999----9--9999988999999998-----------69981327998551001464114
Q gi|254781043|r   75 ---WQWHLYDTIKGSDWLGDVDA----I--QYLAMEAPQSVYELEH-----------YGVPFSRNEAGKIYQRPFGGHMQ  134 (611)
Q Consensus        75 ---~~~~~~Dt~~~g~~l~d~~l----v--~~~~~~a~~~i~~Le~-----------~Gv~f~r~~~G~~~~~~~gg~~~  134 (611)
                         -.++-.-.+..| -|.|++-    |  -.|+.++ +-|.+|.+           -|+.|.-+++ ++..+     ..
T Consensus        81 F~VsrQFWa~lv~~G-~L~dp~~FiNpVPH~Sfv~G~-~~v~YLk~Ry~AL~~~~lF~~m~y~~d~~-~~a~~-----lP  152 (487)
T TIGR01320        81 FQVSRQFWAHLVEEG-VLEDPKSFINPVPHVSFVRGS-DGVAYLKKRYEALKKHPLFEGMEYSEDKA-TFAEW-----LP  152 (487)
T ss_pred             CEECHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCEECCHH-HHHHH-----CC
T ss_conf             113188898998367-246854022788852026570-66799999999861784313750005868-99874-----25


Q ss_pred             CCCCCCCC--CEEE-EECCCCCH---HHHHHHHHHHHHC-CCEEECCCEEEEEEECCCCCCEEEEEEEECC-CEEEEECC
Q ss_conf             56787656--4079-86665426---6789999998731-2303113156520001344301246898058-70899506
Q gi|254781043|r  135 NYGEGPPV--QRTC-AAADRTGH---AILHTLYGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAWQLET-GEIHRFSA  206 (611)
Q Consensus       135 ~~~~g~~~--~R~~-~~~d~tG~---~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~-G~~~~i~A  206 (611)
                      -+..|...  |..+ ++.+.|=-   ++.+-|.+.+... |+++.+++.|.+|=.+.||.=+ |.+.|.+| |+...|+|
T Consensus       153 LM~~gR~~~~pvA~~~~~~GTDvdFGalt~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~-vt~~d~r~PG~~~~l~a  231 (487)
T TIGR01320       153 LMAKGRDFSEPVAANWVAEGTDVDFGALTKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWV-VTVKDTRTPGGKRTLKA  231 (487)
T ss_pred             CCCCCCCCCCHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCE-EEECCCCCCCCCEEEEE
T ss_conf             45687688634332120478400277899999999702898167638500011010588537-88412208887626766


Q ss_pred             CCEEEECCCCC
Q ss_conf             72474157656
Q gi|254781043|r  207 KLVVLATGGYG  217 (611)
Q Consensus       207 kaVILATGG~~  217 (611)
                      |.|=|-.||++
T Consensus       232 ~FvFlGAGG~A  242 (487)
T TIGR01320       232 RFVFLGAGGGA  242 (487)
T ss_pred             EEEEEECCCCH
T ss_conf             77897157416


No 241
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.42  E-value=0.00029  Score=46.43  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCC
Q ss_conf             588989968999999999988------982999986898852
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEK------GFKTACITKVFPTRS   54 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~------G~~V~lieK~~~~~g   54 (611)
                      .|+|||+|++||+||..+.+.      +.+|+|+|+.+..+|
T Consensus         3 ~vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG   44 (466)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (466)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf             599989978999999999872555589986799977998867


No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.34  E-value=0.0031  Score=39.76  Aligned_cols=47  Identities=21%  Similarity=0.173  Sum_probs=32.9

Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             87312303113156520001344301246898058708995067247415765654
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ..+.+|+++..+.++.+-.+. .+|    .  ..+|+.  +.-..+|||||+-.+.
T Consensus        68 y~~~~I~l~~g~~v~~id~~~-~~V----~--l~~g~~--~~YD~LviATGa~p~~  114 (400)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDT-REL----V--LTNGES--WHWDQLFIATGAAARP  114 (400)
T ss_pred             HHHCCCEEECCCEEEEECCCC-CEE----E--ECCCCE--EECCEEEECCCCCCCC
T ss_conf             987896998898899971889-889----9--879988--8726058877888756


No 243
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.30  E-value=0.009  Score=36.71  Aligned_cols=47  Identities=19%  Similarity=0.200  Sum_probs=25.9

Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             8731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ..+.+|+++...-  . +++. +.+    ..+..++....+.++.+|+|||.-.+
T Consensus       102 ~~~~~v~~i~G~a--~-f~~~-~~v----~V~~~~~~~~~i~a~~iiIATGs~p~  148 (467)
T PRK07818        102 MKKNKITEIHGYG--T-FTDA-NTL----EVDLNDGGTETVTFDNAIIATGSSTR  148 (467)
T ss_pred             HHHCCEEEEECEE--E-EECC-CEE----EEECCCCCEEEEEEEEEEECCCCCCC
T ss_conf             9867939994307--9-8248-513----89717896279995268987688766


No 244
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.26  E-value=0.014  Score=35.48  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=28.1

Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ..+.+|+++...-  .+ ++. ..| -   .+..+|.-..++||.+|||||.-.
T Consensus       105 l~~~~v~~i~G~a--~f-~~~-~~v-~---V~~~~g~~~~i~a~~iIIATGs~P  150 (464)
T PRK05976        105 LKKGKVDVFHGIG--RI-LDG-KTV-S---VETATGENEMIIPENLLIATGSRP  150 (464)
T ss_pred             HHHCCCEEEEEEE--EE-CCC-CCE-E---EECCCCCCEEEEECEEEECCCCCC
T ss_conf             9868928997268--86-589-811-4---442788736998266998768886


No 245
>pfam00996 GDI GDP dissociation inhibitor.
Probab=97.25  E-value=0.0005  Score=44.90  Aligned_cols=42  Identities=24%  Similarity=0.226  Sum_probs=36.8

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             323105889899689999999999889829999868988521
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH   55 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~   55 (611)
                      ||.+|||||+|.|+.=+.-|..++..|.+|+.+++....+|.
T Consensus         1 m~eeyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~   42 (439)
T pfam00996         1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGE   42 (439)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf             998502999799879999999997369989997799877863


No 246
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=97.15  E-value=0.00048  Score=45.01  Aligned_cols=29  Identities=31%  Similarity=0.521  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             58898996899999999998898299998
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      .|.|||+|+||.=||+..|++|.+|+|-|
T Consensus         2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyE   30 (444)
T TIGR00137         2 KVIVIGGGLAGSEAAWQLAKEGVRVILYE   30 (444)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             36897188534689999984897279975


No 247
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.15  E-value=0.013  Score=35.58  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=26.7

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC---CCCCCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf             23421577158537788853322760340212203356---64304764322-222232156775566
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH---GANRLGSNSLI-DLVVFGRAAVIRASE  431 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h---Ganrlggnsl~-~~~vfG~~Ag~~aa~  431 (611)
                      |+|.||..          ++|++|+.||||+|+ ...|   |.+..  ..|. .+.-.|++|+.+++.
T Consensus       261 g~I~Vde~----------~~Ts~~~IyA~GD~~-~~~~~~~~~~~~--~~l~~~A~~~g~iaa~n~~g  315 (443)
T PRK09564        261 GAIIVDEY----------GETSIENIYSAGDCA-TVYNIVSGKNVY--VPLATTANKLGRIVGENLAG  315 (443)
T ss_pred             CEEEECCC----------CCCCCCCEEEEECCH-HHCCCCCCCCEE--EEHHHHHHHHHHHHHHHHCC
T ss_conf             97986898----------027889999996573-103555788568--65478899998999986059


No 248
>KOG0685 consensus
Probab=97.14  E-value=0.00084  Score=43.44  Aligned_cols=51  Identities=20%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             CCCCCCCCCEE-----EEEECEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCC
Q ss_conf             20005344133-----23105889899689999999999889-82999986898852
Q gi|254781043|r    4 SSNLKSSYTYV-----DHSYDVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTRS   54 (611)
Q Consensus         4 ~~~~~~~~~~~-----d~~~DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~g   54 (611)
                      ++.|...++..     ..+.-|+|||+|+|||+||.++-++| .+|+|+|-....+|
T Consensus         3 ~~~~s~~~~~~~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685           3 EPVMSALSGTGSGLKARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CCCCCHHCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             633102124433542457964999898567799999999828964899970466675


No 249
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.10  E-value=0.00038  Score=45.72  Aligned_cols=55  Identities=20%  Similarity=0.340  Sum_probs=43.8

Q ss_pred             HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEEC--------------CCEEEEECCCCEEEECCCC
Q ss_conf             998731230311315652000134430124689805--------------8708995067247415765
Q gi|254781043|r  162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE--------------TGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~--------------~G~~~~i~AkaVILATGG~  216 (611)
                      +.+++.||++..-+.-++++.|++|+|.|+.+..++              .|+++.+.+..||+|-|=-
T Consensus       619 ~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le~D~VI~AIGq~  687 (993)
T PRK12775        619 RHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELECDTVIYALGTK  687 (993)
T ss_pred             HHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCC
T ss_conf             879865939996269716786588639899999816679898889478678854888879999957799


No 250
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416   Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=97.09  E-value=0.0011  Score=42.60  Aligned_cols=33  Identities=45%  Similarity=0.670  Sum_probs=30.0

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             058898996899999999998898299998689
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      +|++|||+|-||+-||+.+++.|.++.++....
T Consensus         1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~~   33 (630)
T TIGR00136         1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLNL   33 (630)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCEEEEEEECH
T ss_conf             906886176200356777654175134554041


No 251
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.08  E-value=0.021  Score=34.24  Aligned_cols=49  Identities=31%  Similarity=0.377  Sum_probs=28.1

Q ss_pred             HHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             9998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  161 YGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       161 ~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+.+.+.||+++...-  .+ .+ ++++. +.   ..++. ..|+|+.+|||||.-.+
T Consensus        99 ~~~l~~~gv~~i~G~a--~f-~~-~~~v~-V~---~~~~~-~~~~a~~iIIATGs~P~  147 (462)
T PRK06416         99 EGLLKKNKVDIIRGEA--KL-VD-PNTVR-VK---GEDGE-QTYTAKNIILATGSRPR  147 (462)
T ss_pred             HHHHHHCCCEEEEEEE--EE-EC-CCEEE-EE---ECCCC-EEEEECEEEECCCCCCC
T ss_conf             9999877978998389--98-12-76045-55---36996-69994869999899887


No 252
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.06  E-value=0.022  Score=34.16  Aligned_cols=46  Identities=26%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      ..+.+|+++...--   +.+ .++|.    ....+|.-..++|+.+|+|||.-.
T Consensus       103 ~~~~~v~~i~G~a~---f~~-~~~v~----V~~~~g~~~~i~a~~iiIATGs~P  148 (466)
T PRK06115        103 FRKNKVDWIKGWGR---LDG-VGKVV----VKAEDGSETQLEAKDIVIATGSEP  148 (466)
T ss_pred             HHHCCCEEEEEEEE---EEC-CCCEE----EECCCCCEEEEEEEEEEECCCCCC
T ss_conf             86189479952599---954-99418----985899779999568999989987


No 253
>KOG2852 consensus
Probab=97.06  E-value=0.0038  Score=39.14  Aligned_cols=174  Identities=17%  Similarity=0.171  Sum_probs=92.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCC------CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             05889899689999999999889------829999868988521041165342513789999999999989984588779
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKG------FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD   91 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G------~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d   91 (611)
                      --|+|||+|+-|+++|.-+++++      ..|.++|+..+..+.|.-|+| +-+.                      .|+
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasg-fLa~----------------------wc~   67 (380)
T KOG2852          11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASG-FLAK----------------------WCQ   67 (380)
T ss_pred             EEEEEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCH-HHHH----------------------HHC
T ss_conf             07999888704664200344287667784159999603434355664104-5676----------------------637


Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HCCCC----CCCC---CCCCEEEECCCCCCCCCCCCCCCCEEE--EECCCCC--
Q ss_conf             9999999998899999999-------86998----1327---998551001464114567876564079--8666542--
Q gi|254781043|r   92 VDAIQYLAMEAPQSVYELE-------HYGVP----FSRN---EAGKIYQRPFGGHMQNYGEGPPVQRTC--AAADRTG--  153 (611)
Q Consensus        92 ~~lv~~~~~~a~~~i~~Le-------~~Gv~----f~r~---~~G~~~~~~~gg~~~~~~~g~~~~R~~--~~~d~tG--  153 (611)
                      +..+..++.-|.+.-+.|.       .||..    |+..   ++-...-++.|-.|..   +..+...-  -..+.|+  
T Consensus        68 ~s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~---~e~v~~~ssiG~t~ttaqv  144 (380)
T KOG2852          68 PSIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQ---RERVQKCSSIGSTNTTAQV  144 (380)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHH---HHHHHHHEECCCCCCCCEE
T ss_conf             8653223577788888777762684444522432799996024478666776525555---6775100013687753011


Q ss_pred             --HHHHHHHHHHHHHCC-CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf             --667899999987312-3031131565200013443012468980587089950672474157656543
Q gi|254781043|r  154 --HAILHTLYGQALKNN-AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY  220 (611)
Q Consensus       154 --~~i~~~L~~~~~~~g-v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly  220 (611)
                        .-..+.|+.++++.+ |++.... +.++ .|+.+|+.++.- ....+.++...+..+|+|.|-+..-+
T Consensus       145 hP~lFc~~i~sea~k~~~V~lv~Gk-v~ev-~dEk~r~n~v~~-ae~~~ti~~~d~~~ivvsaGPWTskl  211 (380)
T KOG2852         145 HPYLFCHFILSEAEKRGGVKLVFGK-VKEV-SDEKHRINSVPK-AEAEDTIIKADVHKIVVSAGPWTSKL  211 (380)
T ss_pred             CHHHHHHHHHHHHHHHCCEEEEEEE-EEEE-ECCCCCCCCCCH-HHHCCCEEEEEEEEEEEECCCCCHHH
T ss_conf             7899999999998862676899866-6886-324461215402-33048437834238999527873321


No 254
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864   Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione   Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=97.05  E-value=0.0051  Score=38.30  Aligned_cols=208  Identities=20%  Similarity=0.265  Sum_probs=95.8

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCC--CHHHHHHHHHHHCCCC---
Q ss_conf             310588989968999999999988-9829999868988521041165342513789999--9999999899845887---
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEK-GFKTACITKVFPTRSHTVAAQGGIAASLANMTPD--SWQWHLYDTIKGSDWL---   89 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~-G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~D--s~~~~~~Dt~~~g~~l---   89 (611)
                      ..||++|||+|..||-|-+.|+.. -.+|.+|+-....+---.+|-||.....+-.+..  -.-..+.|+++.+.|.   
T Consensus         2 ~a~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q~~hGPP~~aalGGtCvnvGCvPkklmvtGa~ymd~~resaGfGWe   81 (486)
T TIGR01423         2 KAYDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQKVHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CEEEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEE
T ss_conf             40578998247774100101233210316899842247993000108726872343630011005788888762376400


Q ss_pred             CCHHHHH----HHHHHHHHHHHHH-HHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEE---ECCCCCHHHHHHHH
Q ss_conf             7999999----9999889999999-98699813279985510014641145678765640798---66654266789999
Q gi|254781043|r   90 GDVDAIQ----YLAMEAPQSVYEL-EHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCA---AADRTGHAILHTLY  161 (611)
Q Consensus        90 ~d~~lv~----~~~~~a~~~i~~L-e~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~---~~d~tG~~i~~~L~  161 (611)
                      -|.+.++    .+..--..++... +.+--.| ++..|.....-||.-..        ..++.   .+|-     .....
T Consensus        82 ~d~~~~~~nWk~liaakn~av~~in~sye~mf-~dteGl~f~~G~Gal~~--------~~~v~vre~adP-----~s~v~  147 (486)
T TIGR01423        82 LDAESVKANWKALIAAKNKAVLDINDSYEDMF-KDTEGLEFFLGFGALED--------KNVVLVRESADP-----KSKVK  147 (486)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCEECC--------CCEEEEECCCCC-----HHHHH
T ss_conf             03245446678999876677776765577774-10244022201120014--------757999627885-----25786


Q ss_pred             HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC-C-----CCCCCCCCCCCEECCHHHH
Q ss_conf             998731230311315652000134430124689805870899506724741576-5-----6543342106401444887
Q gi|254781043|r  162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG-Y-----GRAYFSATSAHTCTGDGAG  235 (611)
Q Consensus       162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG-~-----~~ly~~~t~~~~~tGdG~~  235 (611)
                      +++...-|-+-...+...|-++++..|+      ..+-.||.=.++.-+|+-|| |     +++|    |+.-..|--..
T Consensus       148 e~l~~e~i~~atGsWPq~l~i~G~~~Ci------~sneafyl~e~P~r~l~vGGG~is~efaGif----nayk~~GG~v~  217 (486)
T TIGR01423       148 ERLDAEYILLATGSWPQMLKIEGIELCI------SSNEAFYLEEAPKRVLTVGGGYISVEFAGIF----NAYKAVGGKVD  217 (486)
T ss_pred             HHHCCCEEEEEECCCCCCCCCCCCCEEE------ECCCCEECCCCCCEEEEECCCEEEEEEEEHH----HHHCCCCCEEE
T ss_conf             5104335999716773200356642033------0232010047885489864747998620012----32315797589


Q ss_pred             HHHHHCCCCCCC
Q ss_conf             887513653333
Q gi|254781043|r  236 MVARAGLPLQDM  247 (611)
Q Consensus       236 mA~~aGa~l~~m  247 (611)
                      ++||--.-|+..
T Consensus       218 l~yr~~~ilrGf  229 (486)
T TIGR01423       218 LAYRNDMILRGF  229 (486)
T ss_pred             EEECCCEEEECC
T ss_conf             987387033032


No 255
>PRK06116 glutathione reductase; Validated
Probab=97.04  E-value=0.017  Score=34.90  Aligned_cols=43  Identities=19%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             HHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             98731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       163 ~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      .+.+.+|+++...-  . +++. .+|.       .+|+  .|+||.+|||||.-.+
T Consensus       102 ~~~~~~V~~~~g~a--~-f~~~-~tv~-------v~~~--~i~a~~ivIATGs~p~  144 (450)
T PRK06116        102 GLENNGVDLIEGFA--R-FVDA-HTVE-------VNGE--TYTADHILIATGGRPS  144 (450)
T ss_pred             HHHHCCCEEEEEEE--E-ECCC-CCCC-------CCCE--EEEEEEEEECCCCCCC
T ss_conf             98768968997068--8-7268-7403-------5982--9854179998789775


No 256
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=96.98  E-value=0.0012  Score=42.48  Aligned_cols=280  Identities=19%  Similarity=0.205  Sum_probs=130.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             588989968999999999988--982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
                      ||+|||+|+||+--|+++.++  ..+|+|||-+....||=.|+-  +.+               |+-..     ...++-
T Consensus         1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWSf--fd~---------------Dls~~-----qhawla   58 (392)
T TIGR01789         1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWSF--FDA---------------DLSDA-----QHAWLA   58 (392)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEE--ECC---------------CCCHH-----HHHHHH
T ss_conf             97887273357899998752598728999843776688753010--036---------------66743-----577765


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCE-EECC
Q ss_conf             9999889999999986998132799855100146411456787656407986665426678999999873-1230-3113
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAE-FFIE  174 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~-i~~~  174 (611)
                      .|+..     +|           ++| |. .+|+-|.....       +.|-. -|...    +.+.+.+ .+=. ++.+
T Consensus        59 ~lv~~-----~W-----------pgG-Ye-VRFp~~rrkL~-------taY~S-~tStr----f~e~l~q~fpe~s~~~~  108 (392)
T TIGR01789        59 DLVVY-----DW-----------PGG-YE-VRFPKRRRKLK-------TAYLS-MTSTR----FREELEQKFPERSVLLD  108 (392)
T ss_pred             HHCCC-----CC-----------CCC-CE-ECCHHHHHHHH-------CCCCC-CHHHH----HHHHHHHHCCCCEEEEC
T ss_conf             34013-----28-----------897-13-33555543321-------02211-00177----89999987687205640


Q ss_pred             CEEEEEEECCCCCCEEEEEEE-ECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH--CCCCCCCCCCC
Q ss_conf             156520001344301246898-058708995067247415765654334210640144488788751--36533332223
Q gi|254781043|r  175 YFALDLIINSEGCCVGVVAWQ-LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA--GLPLQDMEFVQ  251 (611)
Q Consensus       175 ~~~~~Li~d~dG~V~Gav~~~-~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a--Ga~l~~mEf~q  251 (611)
                      ..++++  +.|+     |.++ -.-|.-.+|+|++||=|=|+     +++  |      ++...+++  |-+++=     
T Consensus       109 r~a~~~--~Ad~-----V~L~PsqyG~g~~i~A~~VID~Rg~-----~P~--~------~L~~GfQ~FlG~e~RL-----  163 (392)
T TIGR01789       109 RKAVEV--DADA-----VDLEPSQYGNGRVIRARAVIDARGF-----KPS--A------ALKVGFQVFLGREVRL-----  163 (392)
T ss_pred             CEEEEE--EECE-----EEECCCCCCCCCEEEEEEEEECCCC-----CCC--C------CCCCCHHHHHCCCHHC-----
T ss_conf             156776--6075-----6626544689626764027725888-----777--2------1025323442320001-----


Q ss_pred             CCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH
Q ss_conf             28884422014304566557808983268612554076510047520111568899881788888887468861117989
Q gi|254781043|r  252 FHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPA  331 (611)
Q Consensus       252 fhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~  331 (611)
                      -.|-|+-.|= .|- +....-.--=|.-|-||+-     .--|.+.++     +.|           +.=|.|--.|+++
T Consensus       164 ~~PHGl~~Pi-iMD-ATVdQ~~PhGnGGgYRFVY-----~LPL~~~~l-----lIE-----------DTyY~D~~~L~~~  220 (392)
T TIGR01789       164 AEPHGLESPI-IMD-ATVDQSDPHGNGGGYRFVY-----VLPLDAQEL-----LIE-----------DTYYADDAELDEE  220 (392)
T ss_pred             CCCCCCCCCE-EEC-CCHHHCCCCCCCCCEEEEE-----ECCCCCCEE-----EEE-----------EEEECCCCCCCHH
T ss_conf             5788888870-425-6242117787987402788-----647987501-----366-----------3000588838789


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC-C--EEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             99998537999997643678654-4--06752033100123421577158537788853322760340212203356643
Q gi|254781043|r  332 VLQERLPGISESARIFAGVDVTR-D--PIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGAN  408 (611)
Q Consensus       332 ~l~~~~~~~~~~~~~~~g~D~~~-~--~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGan  408 (611)
                      .+..+...+- ..+.|.--.+.+ |  -+||      +.+|=.+-.+          .+..+||+=-+|=.| +=+|   
T Consensus       221 ~l~qrI~~YA-~a~gW~~~t~~r~EqGvLPv------~l~GD~sa~~----------~~~~~PG~a~~Glra-gl~H---  279 (392)
T TIGR01789       221 ALRQRIDDYA-LAKGWQLATLVREEQGVLPV------LLAGDSSAYV----------DKVDIPGLAIAGLRA-GLVH---  279 (392)
T ss_pred             HHHHHHHHHH-HHCCCCHHHHHHHHCCCCCE------EECCCCHHCC----------CCCCCCCCCHHHHHH-CCCC---
T ss_conf             8854789998-64286101267653586623------0158730112----------477889740135530-2447---


Q ss_pred             CCCCCCCCCCC
Q ss_conf             04764322222
Q gi|254781043|r  409 RLGSNSLIDLV  419 (611)
Q Consensus       409 rlggnsl~~~~  419 (611)
                      .+.|.||..++
T Consensus       280 P~TgYslp~AV  290 (392)
T TIGR01789       280 PTTGYSLPVAV  290 (392)
T ss_pred             CCCCCCHHHHH
T ss_conf             74135578999


No 257
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689   Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=96.97  E-value=0.00094  Score=43.14  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=30.0

Q ss_pred             ECEEEECCCHHHHHHHHHHHH----CCCCEEEEEC--CCCCCC
Q ss_conf             058898996899999999998----8982999986--898852
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAE----KGFKTACITK--VFPTRS   54 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK--~~~~~g   54 (611)
                      |||+|+|||+.|+.-|.++..    +.+||+|||-  .+-.+|
T Consensus         1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l~s   43 (481)
T TIGR01989         1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKLKS   43 (481)
T ss_pred             CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHH
T ss_conf             9289888857899999997318732023067865234823421


No 258
>PRK06370 mercuric reductase; Validated
Probab=96.95  E-value=0.021  Score=34.30  Aligned_cols=53  Identities=13%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      .||..|..|.+. . ++.++|++||.||||+|. ++.    .|...    +...|++|++++..
T Consensus       280 ~gv~~d~~G~I~-V-d~~~~Ts~p~IyA~GDv~-g~~----~lah~----A~~eg~~a~~n~~~  332 (459)
T PRK06370        280 AGVATDARGYIK-V-DDQLRTTNPGIYAAGDCN-GRG----AFTHT----AYNDAEIVAANLLD  332 (459)
T ss_pred             CCCCCCCCCCEE-E-CCCCEECCCCEEEEECCC-CCC----CCCCH----HHHHHHHHHHHHHC
T ss_conf             386328998588-7-997563787449831146-886----77458----99999999999836


No 259
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.93  E-value=0.028  Score=33.47  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=42.2

Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             033100123421577158537788853322760340212203356643047643222222321567755665420
Q gi|254781043|r  361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK  435 (611)
Q Consensus       361 p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~  435 (611)
                      |...+.-+.+..|..|.++-  +++++|+|||+||||+|....+    |    -..-++-.|.+|+.+|.+|.-+
T Consensus       450 Pnt~~l~~~v~l~~~G~I~v--D~~~~TnvpGVFAAGDvt~~~~----k----Qi~~A~G~Ga~AAlsA~~Yl~r  514 (515)
T TIGR03140       450 PNTEWLKDAVELNRRGEIVI--DERGRTSVPGIFAAGDVTTVPY----K----QIIIAMGEGAKAALSAFDYLIR  514 (515)
T ss_pred             CCHHHHHCHHCCCCCCEEEC--CCCCCCCCCCEEEEEECCCCCC----C----EEEEEHHHHHHHHHHHHHHHHC
T ss_conf             66256515111079973982--9987079998798566738986----6----7878666479999999998734


No 260
>PRK10262 thioredoxin reductase; Provisional
Probab=96.90  E-value=0.0007  Score=43.97  Aligned_cols=47  Identities=21%  Similarity=0.288  Sum_probs=33.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             8853322760340212203356643047643222222321567755665420265
Q gi|254781043|r  384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSP  438 (611)
Q Consensus       384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~  438 (611)
                      +.++|+|||+||||+|. .+.+   |    -..-++-.|.+|+.+|.+|++..+.
T Consensus       273 ~~~~TsipGifAaGDv~-~~~~---~----qv~~Avg~G~~Aa~~a~~yL~~~~~  319 (321)
T PRK10262        273 NATQTSIPGVFAAGDVM-DHIY---R----QAITSAGTGCMAALDAERYLDGLAD  319 (321)
T ss_pred             CCCCCCCCCEEEEEECC-CCCC---C----EEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             87768989989999477-8988---7----6878078589999999999975411


No 261
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.84  E-value=0.038  Score=32.61  Aligned_cols=53  Identities=19%  Similarity=0.149  Sum_probs=30.8

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      -||.+|.+|.+.  .++.++|++||.||||+|. ++..    |...    +.-.|++|+.++..
T Consensus       294 ~Gv~l~~~G~I~--vd~~~~Ts~p~IyA~GDv~-g~~~----l~~~----A~~eg~~a~~~~~g  346 (475)
T PRK06327        294 VGLKLDERGFIP--VDDHCRTNVPNVYAIGDVV-RGPM----LAHK----AEEEGVAVAERIAG  346 (475)
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCCEEECCCCC-CCCC----CHHH----HHHHHHHHHHHHCC
T ss_conf             387447899865--6997546997538710147-8877----7559----99999999998669


No 262
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.84  E-value=0.00067  Score=44.08  Aligned_cols=37  Identities=32%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             0588989968999999999988982999986898852
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      --|-|||||.|||+||..+++.|.+|+|+||.+..+|
T Consensus       144 kkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG  180 (472)
T PRK12810        144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGG  180 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             9899989778999999999866975899725777775


No 263
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.78  E-value=0.042  Score=32.32  Aligned_cols=53  Identities=21%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      .||.+|.+|.+.  .++.++|++||.||||+|. ++.    -|...    +...|++|+.++..
T Consensus       278 ~gi~ld~~G~I~--VD~~~~Ts~p~IyA~GDv~-g~~----~la~~----A~~qg~~a~~~i~~  330 (460)
T PRK06292        278 TGIELDERGRPV--VDPHTQTNVPGIYAAGDVN-GGP----PLLHE----AADEGIIAAENAAY  330 (460)
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCCEEEECCCC-CCC----CCHHH----HHHHHHHHHHHHHC
T ss_conf             186317999881--4887302887358740357-887----76789----99999999999727


No 264
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.72  E-value=0.037  Score=32.71  Aligned_cols=50  Identities=18%  Similarity=0.253  Sum_probs=30.7

Q ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             9999873123031131565200013443012468980587089950672474157656
Q gi|254781043|r  160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      +.+...+.+|+++...-  .+ ++. .+|    ..+..+|....+.|+.+|||||.-.
T Consensus       101 ~~~~l~~~gv~~i~G~a--~f-~~~-~~v----~V~~~dg~~~~i~a~~iIIATGs~p  150 (465)
T PRK05249        101 RRGFYARNRVEVIQGRA--SF-VDP-HTV----EVECPDGSVETLTAEKIVIATGSRP  150 (465)
T ss_pred             HHHHHHHCCCEEEEEEE--EE-CCC-CCE----EEECCCCCEEEEEEEEEEEECCCCC
T ss_conf             99999868978998478--97-279-840----4434899628998427999537524


No 265
>PRK11749 putative oxidoreductase; Provisional
Probab=96.63  E-value=0.0013  Score=42.23  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=32.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             588989968999999999988982999986898852
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      -|.|||||.|||+||..+++.|.+|+|+||.+..+|
T Consensus       142 kVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GG  177 (460)
T PRK11749        142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG  177 (460)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             899989678999999999976984799704787875


No 266
>PRK12831 putative oxidoreductase; Provisional
Probab=96.60  E-value=0.0013  Score=42.16  Aligned_cols=36  Identities=28%  Similarity=0.513  Sum_probs=32.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             588989968999999999988982999986898852
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      -|-|||||.|||+||..++..|.+|.|.||.+..+|
T Consensus       142 kVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG  177 (464)
T PRK12831        142 KVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGG  177 (464)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             899989768999999999976991799827888898


No 267
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.56  E-value=0.0016  Score=41.62  Aligned_cols=60  Identities=22%  Similarity=0.386  Sum_probs=44.5

Q ss_pred             CCCCCCCCCEEECCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             2342157715853778--88533227603402122033566430476432222223215677556654202
Q gi|254781043|r  368 GGIPTNYWGEVLDANS--KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS  436 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~--~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~  436 (611)
                      -||.+|.||.+...+.  .+.+|++||.||+|++.    +|     ......++-.||.|++++.+|....
T Consensus       576 ~giel~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v----~G-----~stVV~AI~~Gr~AA~sI~~yl~~k  637 (639)
T PRK12809        576 SGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAV----HG-----ADLVVTAMAAGRQAARDMLTLFDTK  637 (639)
T ss_pred             CCEEECCCCCEECCCCCCCCCCCCCCCEEECCCCC----CC-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78558899988617877767668999999827878----67-----3699999999999999999998740


No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=96.53  E-value=0.0075  Score=37.23  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=18.9

Q ss_pred             EEEECCCHHHHHHHHHHH----HCCCCEEEEECCC
Q ss_conf             889899689999999999----8898299998689
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMA----EKGFKTACITKVF   50 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~----e~G~~V~lieK~~   50 (611)
                      ++|||-|+||.++==+..    +...+++|+..-|
T Consensus         1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP   35 (813)
T TIGR02374         1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEP   35 (813)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             97870474103477767512101773089982588


No 269
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.51  E-value=0.0015  Score=41.75  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=42.0

Q ss_pred             CCCCCCCCCEEECCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             2342157715853778--885332276034021220335664304764322222232156775566542
Q gi|254781043|r  368 GGIPTNYWGEVLDANS--KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID  434 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~--~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~  434 (611)
                      -||.+|.||++.-...  .+.+|++||+||+|++..         |...+..++-.||.|++++.+|+.
T Consensus       593 ~gl~~~~~G~I~~d~~~~~~~~Ts~pgVFAgGD~v~---------G~stVV~Ai~~Gr~AA~aId~yLg  652 (654)
T PRK12769        593 HGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVR---------GADLVVTAMAEGRHAAQGIIDWLG  652 (654)
T ss_pred             CCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCC---------CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             681376999887367777654489999898078566---------828999999999999999999868


No 270
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.49  E-value=0.066  Score=31.06  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             234215771585377888533227603402122033566430476432222223215677556
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS  430 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa  430 (611)
                      +||.||.          .++|++|+.||+|+|. ++.    .|...+    .-.|++|+.++.
T Consensus       285 ~gI~Vd~----------~~~Ts~p~IyA~GDv~-g~~----~l~h~A----~~~g~~aa~~~~  328 (458)
T PRK06912        285 KGISVNE----------HMQTNVPHIYACGDVI-GGI----QLAHVA----FHEGTTAALHAS  328 (458)
T ss_pred             CCEECCC----------CCCCCCCEEEEEECCC-CCC----CCCHHH----HHHHHHHHHHHC
T ss_conf             9547466----------6676876499962378-987----773289----999999999757


No 271
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.47  E-value=0.0022  Score=40.77  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=33.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             588989968999999999988982999986898852
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      -|.|||||.|||+||.-++..|.+|.|.||.+..+|
T Consensus       195 kVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GG  230 (652)
T PRK12814        195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG  230 (652)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             799968378999999999977990699815888898


No 272
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258   These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=96.43  E-value=0.071  Score=30.84  Aligned_cols=47  Identities=21%  Similarity=0.191  Sum_probs=30.3

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf             23421577158537788853322760340212203356643047643222-22232156775566542
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLID-LVVFGRAAVIRASEMID  434 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~-~~vfG~~Ag~~aa~~~~  434 (611)
                      |-|+||.+          ++|+|||.||+||+. ++.         .|+- |.--|.+|+++++....
T Consensus       301 G~i~vd~~----------~~Tnv~~IYAIGDv~-gg~---------mLAH~A~~eG~vAAe~iaG~~~  348 (481)
T TIGR01350       301 GRIVVDEY----------MRTNVPGIYAIGDVI-GGP---------MLAHVASHEGIVAAENIAGKEP  348 (481)
T ss_pred             CEEEECCE----------EEECCCCEEEEEECC-CCC---------HHHHHHHHHHHHHHHHHHCCCC
T ss_conf             81887983----------251689666887347-870---------2689999878999999818761


No 273
>pfam00732 GMC_oxred_N GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
Probab=96.37  E-value=0.0067  Score=37.57  Aligned_cols=56  Identities=32%  Similarity=0.305  Sum_probs=42.9

Q ss_pred             HHHHHCCCEEECCCEEEEEEECCC-CCCEEEEEEEECCCEEEEECC-CCEEEECCCCC
Q ss_conf             998731230311315652000134-430124689805870899506-72474157656
Q gi|254781043|r  162 GQALKNNAEFFIEYFALDLIINSE-GCCVGVVAWQLETGEIHRFSA-KLVVLATGGYG  217 (611)
Q Consensus       162 ~~~~~~gv~i~~~~~~~~Li~d~d-G~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~  217 (611)
                      ..+.+.+.+++.++.|++++.+++ ++++||.+.+...+..+.+.| |-||||+|-++
T Consensus       135 ~~~~~~nl~v~t~~~V~rI~~~~~~~rA~GV~~~~~~~~~~~~~~a~keVILsAGai~  192 (218)
T pfam00732       135 RPALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITAAKEVVVAAGALN  192 (218)
T ss_pred             CHHHCCCEEEECCCEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCEEEECCCHHH
T ss_conf             4212162688507679899992688889999999899988999998999999198587


No 274
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.36  E-value=0.079  Score=30.55  Aligned_cols=53  Identities=23%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      .||.+|..|.+.  .++.++|++||.||+|+|. ++.    .|...    +...|++|+.++..
T Consensus       285 ~gv~~~~~G~I~--vd~~~rTs~~~IyA~GDv~-g~~----~l~h~----A~~qg~ia~~n~~g  337 (467)
T PRK07845        285 VGVELGPGGHIT--VDRVSRTSVPGIYAAGDCT-GVL----PLASV----AAMQGRIAMYHALG  337 (467)
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCEEEEEECCC-CCC----CCHHH----HHHHHHHHHHHHHC
T ss_conf             187547788566--7987665877099970457-886----76558----99999999999707


No 275
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982    Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=96.31  E-value=0.0085  Score=36.88  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=24.9

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCC---CCHHHHHHHHHHH
Q ss_conf             85332276034021220335664304764-3222222---3215677556654
Q gi|254781043|r  385 NPERFAPGLMAIGEAGCASVHGANRLGSN-SLIDLVV---FGRAAVIRASEMI  433 (611)
Q Consensus       385 ~~~t~i~GLyAaGe~a~~g~hGanrlggn-sl~~~~v---fG~~Ag~~aa~~~  433 (611)
                      +++|+|||+||||||-+           + ++-+..+   .|-+|+.+|.+|+
T Consensus       280 ~~~Tsv~GvFAAGDv~~-----------kW~~rQ~vTAag~G~~AA~~a~~yL  321 (321)
T TIGR01292       280 TMRTSVPGVFAAGDVRD-----------KWGFRQAVTAAGDGCIAALSAERYL  321 (321)
T ss_pred             EEECCCCCEEEEEEEEC-----------CCCCEEEEEEECHHHHHHHHHHHHC
T ss_conf             12306686897304406-----------8861376787000689999998709


No 276
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=96.26  E-value=0.0026  Score=40.23  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             C-CCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             2-34215771585377888533227603402122033566430476432222223215677556654
Q gi|254781043|r  368 G-GIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI  433 (611)
Q Consensus       368 G-Gi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~  433 (611)
                      + +|.++.||-++  .+++.+|+|||.||.||+.-         |+....-++-.|++|++++-+|+
T Consensus       407 ~r~lkt~~~GTIv--VdE~~~TsipGVfAGGD~i~---------G~atVi~Amg~GkrAAk~I~eYl  462 (462)
T TIGR01316       407 SRSLKTSKRGTIV--VDEDLETSIPGVFAGGDVIR---------GEATVILAMGDGKRAAKAIDEYL  462 (462)
T ss_pred             CCEEEECCCCCEE--ECCCCCCCCCCEEECCCEEE---------CCCEEEEECCCCHHHHHHHHHCC
T ss_conf             7333345886578--74763047675742672774---------58669985003568999874229


No 277
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733   4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria.   This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=96.25  E-value=0.09  Score=30.18  Aligned_cols=167  Identities=18%  Similarity=0.241  Sum_probs=95.1

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEE-ECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             31058898996899999999998898299998689885210411653425-13789999999999989984588779999
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAA-SLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a-~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
                      |++-|-|||+|.|||-=.-=+.++|.+.+||||-...-     -.|=|-| +|        |.-+.|.|+.-.  +++.+
T Consensus         1 MkTqVaIiG~GPsGLLLGQLLh~~GId~viLEr~~~dY-----VlgRIRAGvL--------E~g~v~LL~~ag--v~~Rm   65 (393)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDTVILERKSRDY-----VLGRIRAGVL--------EQGTVDLLREAG--VDERM   65 (393)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHH-----HHHHHCCCHH--------HHHHHHHHHHHH--HHHHH
T ss_conf             95179997577357899999986698589972357223-----4332101235--------789999998722--32234


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999988999999998699813279985510014641145678765640798666542-66789999998731230311
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i~~~L~~~~~~~gv~i~~  173 (611)
                      -+          +=|.+-|+.+.-  +|......+-.|+.    |.  .-++|     | .++++=|++.-.+.|..+++
T Consensus        66 ~~----------eG~~H~G~~ia~--~g~~~riDl~~~tG----G~--~V~VY-----GQTEvtrDL~~ARe~~G~~~v~  122 (393)
T TIGR02360        66 DR----------EGLVHEGIEIAF--DGQRFRIDLKALTG----GK--TVMVY-----GQTEVTRDLYEAREQAGLKTVY  122 (393)
T ss_pred             HH----------CCCCCCCEEEEC--CCCEEECCHHHHCC----CC--EEEEE-----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf             53----------587325654501--78242000766058----97--89997-----6615778899999863895564


Q ss_pred             CCEEEEEEECCCC-CCEEE-EEEEECCCEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf             3156520001344-30124-68980587089950672474157656543342
Q gi|254781043|r  174 EYFALDLIINSEG-CCVGV-VAWQLETGEIHRFSAKLVVLATGGYGRAYFSA  223 (611)
Q Consensus       174 ~~~~~~Li~d~dG-~V~Ga-v~~~~~~G~~~~i~AkaVILATGG~~~ly~~~  223 (611)
                      +..-++ ++|-++ +=.|+ |.| .++|+.++|-|.- |--|=||.++-..+
T Consensus       123 ~a~~V~-~HD~~~~~P~gc~VT~-~~dG~~~~~dCDf-IAGCDGFHGvSR~s  171 (393)
T TIGR02360       123 DADDVR-LHDLAGDRPEGCHVTF-ERDGEEHRIDCDF-IAGCDGFHGVSRAS  171 (393)
T ss_pred             ECCCCC-CCCCCCCCCCCCEEEE-EECCCEEEEEEEE-EECCCCCCCCCCCC
T ss_conf             114321-1265678889525877-7879177764026-75278886865445


No 278
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=96.25  E-value=0.025  Score=33.79  Aligned_cols=34  Identities=15%  Similarity=0.343  Sum_probs=30.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             1058898996899999999998898299998689
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      .--|+|+|+|-=|.|.|++|++.|.+|++++..+
T Consensus        12 ~kkIgIlGgGQLg~Mla~aA~~LG~~vivld~~~   45 (395)
T PRK09288         12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYA   45 (395)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             8889998988999999999998799899984899


No 279
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.24  E-value=0.0026  Score=40.28  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=39.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             23421577158537788853322760340212203356643047643222222321567755665
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM  432 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~  432 (611)
                      -||.+|.+|.+. .+..+.+|++||.||+|+|..         |......++.-||.|++++...
T Consensus       784 ~GIeld~rG~I~-vD~~t~~TS~pGVFAaGD~v~---------GpstVV~AIadGR~AA~aIl~~  838 (1012)
T TIGR03315       784 NGIPLDEYGWPV-VNQATGETNITNVFVIGDANR---------GPATIVEAIADGRKAANAILSR  838 (1012)
T ss_pred             CCCEECCCCCEE-ECCCCCCCCCCCEEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             484088998988-688878789999888006675---------7789999999999999999864


No 280
>KOG1276 consensus
Probab=96.24  E-value=0.0077  Score=37.15  Aligned_cols=39  Identities=26%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCE--EEEECCCCCCCC
Q ss_conf             105889899689999999999889829--999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKT--ACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V--~lieK~~~~~g~   55 (611)
                      .-+|.|+|+|++||+||..++..+.+|  +|.|+.+..+|-
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw   51 (491)
T KOG1276          11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW   51 (491)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCE
T ss_conf             66699988853688999999854899559998427866652


No 281
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.15  E-value=0.0036  Score=39.32  Aligned_cols=16  Identities=6%  Similarity=-0.097  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHCCCEEE
Q ss_conf             8999999873123031
Q gi|254781043|r  157 LHTLYGQALKNNAEFF  172 (611)
Q Consensus       157 ~~~L~~~~~~~gv~i~  172 (611)
                      ++...+-.+..||+.+
T Consensus       192 Mk~v~~~t~~~~i~t~  207 (760)
T PRK12778        192 MKFVCLLTKKYEIPTI  207 (760)
T ss_pred             HHHHHHHHCCCCCCEE
T ss_conf             9999987260589748


No 282
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.10  E-value=0.0074  Score=37.27  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=27.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCC
Q ss_conf             588989968999999999988---98299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEK---GFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~---G~~V~lieK~~   50 (611)
                      -|+|||+|.||+.+|.+++++   +.+|+||++.+
T Consensus         1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~   35 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS   35 (364)
T ss_pred             CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf             99999960999999999704178998399999988


No 283
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.04  E-value=0.0067  Score=37.55  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=33.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
Q ss_conf             0588989968999999999988982999986898852104
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTV   57 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~   57 (611)
                      -+|-|||+|+|||+||.-++.. .+|.|.|-....+||+.
T Consensus         9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~   47 (447)
T COG2907           9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN   47 (447)
T ss_pred             CCEEEECCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCCC
T ss_conf             6168972562014457753235-52478860662467531


No 284
>PTZ00318 NADH dehydrogenase; Provisional
Probab=95.90  E-value=0.0091  Score=36.66  Aligned_cols=32  Identities=28%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|||+|.||+.+|..+.....+|+||++.+
T Consensus        12 rVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~n   43 (514)
T PTZ00318         12 NVVVVGTGWAGCYFARHLNPKLANLHVLSTRN   43 (514)
T ss_pred             EEEEECCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             58999976999999997386898289999999


No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.79  E-value=0.019  Score=34.51  Aligned_cols=30  Identities=30%  Similarity=0.475  Sum_probs=23.3

Q ss_pred             EEEECCCHHHHHHHHHHHHC--CCCEEEEECC
Q ss_conf             88989968999999999988--9829999868
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEK--GFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~--G~~V~lieK~   49 (611)
                      ++|||+|.||+.||..+.+.  ..+|.++...
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~   32 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGRE   32 (415)
T ss_pred             CEEECCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             98982559999999999850777885999523


No 286
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.78  E-value=0.0076  Score=37.17  Aligned_cols=47  Identities=17%  Similarity=0.225  Sum_probs=36.7

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             78885332276034021220335664304764322222232156775566542026
Q gi|254781043|r  382 NSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS  437 (611)
Q Consensus       382 ~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~  437 (611)
                      +.++.+|++||+||+|++.    +|     ...+.+++-.||.|+.++..|+....
T Consensus       397 ~~~~~~Ts~~gVFa~GD~v----~G-----p~~vv~AI~~Gr~AA~~Id~yL~G~~  443 (560)
T PRK12771        397 DRNFRMTGRPGVFAGGDMV----PG-----ERTVTTAVGHGKKAARHIDAFLRGEH  443 (560)
T ss_pred             CCCCCCCCCCCEEECCCCC----CC-----CHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7876657998867436546----68-----41899999999999999999966898


No 287
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.78  E-value=0.15  Score=28.80  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             234215771585377888533227603402122033566430476432222223215677556654202
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS  436 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~  436 (611)
                      +++..|.+|-++-  ++.++|+|||+||||++-...+    |    -..-+.--|-+|+.+|-+|+...
T Consensus       253 ~~VelDe~GyI~t--De~m~TnVpGVyAAGDV~~k~l----r----QvvTA~~dGaiAA~~aerYi~~~  311 (555)
T TIGR03143       253 GVVELDKRGYIPT--NEDMETNVPGVYAAGDLRPKEL----R----QVVTAVADGAIAATSAERYVKEL  311 (555)
T ss_pred             CCCCCCCCCEEEE--CCCCCCCCCCEEECCCCCCCCC----C----EEEEEHHHHHHHHHHHHHHHHHH
T ss_conf             7325888971973--9997059998898834528987----7----35470875799999999999999


No 288
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.74  E-value=0.011  Score=36.22  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=31.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             05889899689999999999889829999868988
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      -.|.|||||.|||.||..++.+|.+|++.++.+..
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCC
T ss_conf             67999888951555889998689879982666777


No 289
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.73  E-value=0.0098  Score=36.47  Aligned_cols=33  Identities=27%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             058898996899999999998898299998689
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      --|.|||+|+||.-||+.++++|..|.|.|--+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             CCEEEECCCCCCCHHHHHHHHCCCCEEEEECCC
T ss_conf             725897565445199999987698379997045


No 290
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.72  E-value=0.0059  Score=37.89  Aligned_cols=52  Identities=15%  Similarity=0.017  Sum_probs=37.8

Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             87312303113156520001344301246898058708995067247415765654
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ..+.||+++.++.++++=.+  .+.  +...+..+++.+.+.=..+|||||.-...
T Consensus        54 ~~~~~I~v~~~~~V~~ID~~--~k~--V~~~~~~~~~~~~~~YDkLiiATGs~p~~  105 (427)
T TIGR03385        54 IEKRGIDVKTNHEVIKVNDE--RQT--VVVKNNKTNETYEESYDYLILSPGASPII  105 (427)
T ss_pred             HHHCCCEEECCCEEEEEECC--CCE--EEEEECCCCCEEECCCCEEEECCCCCCCC
T ss_conf             98789499918979999899--999--99966798966445789999976998567


No 291
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.71  E-value=0.019  Score=34.57  Aligned_cols=33  Identities=27%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             058898996899999999998898299998689
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -.|+|||+|.+|+.||..|+..|++|.++++..
T Consensus        21 a~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~   53 (150)
T pfam01262        21 AKVVVIGGGVVGLGAAATAKGLGAPVTILDVRP   53 (150)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             779998987899999999986799899972999


No 292
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.69  E-value=0.0069  Score=37.46  Aligned_cols=53  Identities=23%  Similarity=0.211  Sum_probs=38.4

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      -||.+|.+|.+.-.  ++.+|++||.||+|+|. .        |....-.++--||.|++++..
T Consensus       798 ~GIeld~~G~I~vD--e~~~TS~pGVFAaGD~v-~--------GpSTVV~AIadGRkAA~aIl~  850 (1032)
T PRK09853        798 MGIPLDKNGWPDVN--HNGETNLTNVFMIGDVQ-R--------GPSSIVAAIADARRATDAILS  850 (1032)
T ss_pred             CCCEECCCCCEEEC--CCCCCCCCCEEECCCCC-C--------CHHHHHHHHHHHHHHHHHHHH
T ss_conf             68118899988779--89987899977730767-6--------778999999999999999985


No 293
>PRK13748 putative mercuric reductase; Provisional
Probab=95.55  E-value=0.18  Score=28.25  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             2342157715853778885332276034021220335664304764322222232156775566
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      -||.+|..|.+.  .++.++|++|+.||+|+|. ++.    .|..-    +..-|++|+.++..
T Consensus       375 ~GV~~d~~G~I~--Vd~~~rTs~p~IYA~GDv~-g~~----~Lah~----A~~eG~~aa~ni~g  427 (561)
T PRK13748        375 AGVTVNAQGAIV--IDQGMRTSVPHIYAAGDCT-DQP----QFVYV----AAAAGTRAAINMTG  427 (561)
T ss_pred             CCCEECCCCCEE--CCCCCCCCCCCEEEEECCC-CCC----CCHHH----HHHHHHHHHHHHCC
T ss_conf             287146899872--4887430786299961016-787----55689----99999999998619


No 294
>KOG0399 consensus
Probab=95.48  E-value=0.19  Score=28.10  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEEEEECEEEECCCHHHHHH--------HHHHHHCCCCEEEEEC
Q ss_conf             33231058898996899999--------9999988982999986
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRA--------TLGMAEKGFKTACITK   48 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~A--------Ai~A~e~G~~V~lieK   48 (611)
                      .+|-.||+   --|..|+..        |-+|...|.+++|++.
T Consensus       659 ~iditf~~---~~Gv~Gl~~~ld~ic~~A~eAv~~G~qiLVLSD  699 (2142)
T KOG0399         659 EIDITFDK---SEGVKGLVKTLDRICEEADEAVRDGYQILVLSD  699 (2142)
T ss_pred             EEEEEEEH---HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             65556345---422445799999999988899856655999834


No 295
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=95.45  E-value=0.026  Score=33.67  Aligned_cols=31  Identities=35%  Similarity=0.445  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             8898996899999999998898299998689
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      |+|||+|.-||-.|..+++.|.+|.|++..+
T Consensus         2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~   32 (82)
T pfam00070         2 VVVVGGGYIGLEFASALAKLGSKVTVVERRD   32 (82)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9999988999999999986392789981257


No 296
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102   Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=95.44  E-value=0.19  Score=28.00  Aligned_cols=182  Identities=20%  Similarity=0.194  Sum_probs=101.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHC---------CCCEEEE------------------------
Q ss_conf             8898996899999999998898299998689885210411---------6534251------------------------
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAA---------QGGIAAS------------------------   66 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A---------~GGi~a~------------------------   66 (611)
                      |.|-|+|+|||.||--+++.|-.-+++|...+.+|. ++|         ..|+..-                        
T Consensus         2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~-vaaW~d~dGdW~etGlh~ffGayPn~~~l~~el~i~drlqWk~   80 (454)
T TIGR02731         2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK-VAAWKDEDGDWYETGLHIFFGAYPNILQLLKELNIEDRLQWKE   80 (454)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCC-EEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf             577227455677887876358962686321003550-2332247886113104554314578999998615022222211


Q ss_pred             ----CC--CCC--------CC--CHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHH--HHHHHHHHHCCCC
Q ss_conf             ----37--899--------99--99999998998458877999999-------------999988--9999999986998
Q gi|254781043|r   67 ----LA--NMT--------PD--SWQWHLYDTIKGSDWLGDVDAIQ-------------YLAMEA--PQSVYELEHYGVP  115 (611)
Q Consensus        67 ----~~--~~~--------~D--s~~~~~~Dt~~~g~~l~d~~lv~-------------~~~~~a--~~~i~~Le~~Gv~  115 (611)
                          +.  +.+        ||  +|-..+.-+++..+.+.=++.++             .|++..  -...+||...|++
T Consensus        81 h~~if~~~~~PG~~s~f~~P~~P~P~n~~~~il~nn~ml~W~~k~~fa~Gl~~~~~~Gq~yve~~d~~~~~~Wl~~~~~~  160 (454)
T TIGR02731        81 HSLIFNQPDKPGTLSRFDFPDIPAPVNGVAAILRNNDMLTWEEKIKFAIGLLPAIVRGQKYVEEQDKYTVSEWLKKQGVP  160 (454)
T ss_pred             HEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             00134046888740010477877518999998722421223666666753468874220567765314489898743711


Q ss_pred             CCCCCCCCE---------------------E----EECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             132799855---------------------1----001464114567876564079866654266789999998731230
Q gi|254781043|r  116 FSRNEAGKI---------------------Y----QRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAE  170 (611)
Q Consensus       116 f~r~~~G~~---------------------~----~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~  170 (611)
                      =.-+++-.+                     +    ++.--|....+.+|.+..|           +...+.+.+...|.+
T Consensus       161 ~rv~~~vf~a~~kal~f~~Pde~s~~~~l~alnrfl~e~~Gsk~afldG~P~er-----------lC~P~v~~~~~~GGe  229 (454)
T TIGR02731       161 ERVNDEVFIAMSKALNFINPDEVSATVVLTALNRFLQERYGSKIAFLDGAPPER-----------LCQPIVDYITSRGGE  229 (454)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-----------HHHHHHHHHHHCCCE
T ss_conf             344567888788774015702567889999999987430477167626888045-----------557899999724881


Q ss_pred             EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEEC
Q ss_conf             3113156520001344301246898058708995067247415
Q gi|254781043|r  171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLAT  213 (611)
Q Consensus       171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILAT  213 (611)
                      +..+..+.++..++|+.|......+.....-..+.+.+-|.|.
T Consensus       230 ~~~~~~l~~i~l~~d~~v~~f~~~~~~g~~~~~~~~d~y~~a~  272 (454)
T TIGR02731       230 VRLNARLKEIVLNEDGSVKAFALADGEGKDSFEVTADAYVSAL  272 (454)
T ss_pred             EEECCCEEEEEECCCCCEEHEEEECCCCCCCCEEECCCEEEHH
T ss_conf             6641310013435776210002204456420011101001111


No 297
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.42  E-value=0.027  Score=33.54  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=29.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC
Q ss_conf             05889899689999999999889--8299998689
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKG--FKTACITKVF   50 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~   50 (611)
                      .-|+|||||.+|+.+|..+..+-  ++|+||++.+
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~   38 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD   38 (405)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             56999898679999999764167887189991887


No 298
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.33  E-value=0.027  Score=33.55  Aligned_cols=57  Identities=23%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCC
Q ss_conf             99999873123031131565200013443012468980587089950672474157656543
Q gi|254781043|r  159 TLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAY  220 (611)
Q Consensus       159 ~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly  220 (611)
                      .+.+..+...+++...+.+.+.  ++++..==+.   ..+|....+.|+.||+|||.++.=|
T Consensus        91 ~~~~y~~~~~i~~~~~v~~~~~--~~~~~~w~V~---~~~~~~~~~~a~~vV~ATG~~~~P~  147 (443)
T COG2072          91 YLEKYGLRFQIRFNTRVEVADW--DEDTKRWTVT---TSDGGTGELTADFVVVATGHLSEPY  147 (443)
T ss_pred             HHHHHCCEEEEECCCCEEEEEE--ECCCCEEEEE---ECCCCCCEEECCEEEECCCCCCCCC
T ss_conf             9998356045021452568863--0588706999---6488752251267998305789897


No 299
>KOG1800 consensus
Probab=95.30  E-value=0.033  Score=32.97  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=38.1

Q ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHH
Q ss_conf             58898996899999999998--898299998689885210411653425137899999999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW   77 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~   77 (611)
                      -|-|||||.||+.+|-.+..  .+++|-+.||.|+.-|=..+          ...||+++.
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy----------GVAPDHpEv   72 (468)
T KOG1800          22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY----------GVAPDHPEV   72 (468)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE----------CCCCCCCCH
T ss_conf             599988883688999999725899706754157766533663----------347898210


No 300
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.22  E-value=0.028  Score=33.44  Aligned_cols=55  Identities=20%  Similarity=0.248  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             00123421577158537788853322760340212203356643047643222222321567755
Q gi|254781043|r  365 YNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRA  429 (611)
Q Consensus       365 y~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~a  429 (611)
                      .+.-||.++.||-++ .+.++.+|++||.||.|++..+         +.....++--|+.|++.+
T Consensus       568 ~t~p~L~~~k~G~I~-vd~~t~~Ts~~gVfAGGD~vrG---------~aTVIlAmgdG~~AAkei  622 (944)
T PRK12779        568 DAEPGLKTNKWGTIE-VEAGSQRTSIKDVYSGGDAARG---------GSTAIRAAGDGQAAAKEI  622 (944)
T ss_pred             CCCCCCCCCCCCEEE-ECCCCCCCCCCCEEECCCCCCC---------HHHHHHHHHHHHHHHHHH
T ss_conf             368773016785199-8855576677777633550245---------678988755459999998


No 301
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=95.21  E-value=0.0068  Score=37.50  Aligned_cols=46  Identities=15%  Similarity=0.271  Sum_probs=21.3

Q ss_pred             HHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             8731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  164 ALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       164 ~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      ..+++|+++.+..|+++=+++ ..|+      ..-++...|  ...|||||-+..
T Consensus        65 y~~~~i~ly~ge~vi~id~~~-k~v~------t~a~r~~~Y--D~LilATGS~pf  110 (813)
T TIGR02374        65 YEKHGIKLYTGERVIQIDREE-KSVI------TDAGRTLSY--DKLILATGSYPF  110 (813)
T ss_pred             CCCCCEEEEECCEEEEEECCC-CEEE------CCCCCCCCC--CEEEEECCCCCC
T ss_conf             122754898768889983576-4587------047763357--517873066573


No 302
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.19  E-value=0.055  Score=31.58  Aligned_cols=42  Identities=17%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             EECEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHH
Q ss_conf             1058898996899999999998-89829999868988521041
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAE-KGFKTACITKVFPTRSHTVA   58 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e-~G~~V~lieK~~~~~g~s~~   58 (611)
                      -+=|-|||||.||+.||-.+.+ .+++|-++||.|..-|=..+
T Consensus        39 PlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfGLVRy   81 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
T ss_conf             6579998888389999999963899779888268988741110


No 303
>PRK04965 nitric oxide reductase; Provisional
Probab=95.18  E-value=0.039  Score=32.56  Aligned_cols=47  Identities=26%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r  162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
                      +...+.+|+++.++.++.+=.  +.+++  .    .+|+  .|.-+..|||||.-..
T Consensus        66 ~~~~~~~I~l~~~~~V~~ID~--~~k~V--~----~~g~--~~~YDkLVLATGa~p~  112 (378)
T PRK04965         66 EFAEQFNLRLFPHTWVTDIDA--EAQVV--K----SQGN--QWQYDKLVLATGASAF  112 (378)
T ss_pred             HHHHHCCEEEECCCEEEEECC--CCCEE--E----ECCC--EEECCEEEEECCCCCC
T ss_conf             998748979986989999846--46379--9----5891--9846879993588755


No 304
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774    This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=95.17  E-value=0.024  Score=33.89  Aligned_cols=168  Identities=23%  Similarity=0.330  Sum_probs=81.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             889899689999999999889829999868988521041165342513-7899999999999899845887799999999
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL-ANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL   98 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~-~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~   98 (611)
                      |-|||||.||-+||=++++.|.+..|+|+..   +++--.+|.|...+ ++-  +=|.    |++       |... ..+
T Consensus         3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~---~~aKPCGGAIPLCMv~EF--~lP~----d~i-------DRRV-~kM   65 (401)
T TIGR02028         3 VAVVGGGPAGASAAETLAKAGIQTFLLERKL---DNAKPCGGAIPLCMVDEF--DLPR----DII-------DRRV-TKM   65 (401)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEEECC---CCCCCCCCCCCCCCCCHH--CCCH----HHH-------HCCC-CEE
T ss_conf             8897489741689999985031046332056---788778886441201010--3786----675-------1211-022


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH-HHHHHHHCCCEEECCCEE
Q ss_conf             9988999999998699813279985510014641145678765640798666542667899-999987312303113156
Q gi|254781043|r   99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT-LYGQALKNNAEFFIEYFA  177 (611)
Q Consensus        99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~-L~~~~~~~gv~i~~~~~~  177 (611)
                      =-=||..|.      +.|.|+-.-.    .+-|+         .          =++++++ |.+++.+.|.++...+..
T Consensus        66 k~~SPSN~~------~d~gr~L~~~----~yIgM---------~----------RREVLDsflR~RA~~~GA~li~Glv~  116 (401)
T TIGR02028        66 KMISPSNIA------VDIGRTLKEH----EYIGM---------V----------RREVLDSFLRERAADAGATLINGLVL  116 (401)
T ss_pred             EEECCCCHH------HHHHCCCCCC----CCCCC---------H----------HHHHHHHHHHHHHHHCCCEEECCEEE
T ss_conf             421641013------3200027887----61251---------4----------57888899999998648814144457


Q ss_pred             --------------EEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCH-HHHHHHHHCC
Q ss_conf             --------------5200013443012468980587089950672474157656543342106401444-8878875136
Q gi|254781043|r  178 --------------LDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGD-GAGMVARAGL  242 (611)
Q Consensus       178 --------------~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGd-G~~mA~~aGa  242 (611)
                                    ++.+. .||+ .|+      +|.-.++--.+||=|-|-=.++-+.     ...|| -+++|++-=.
T Consensus       117 ~l~~P~~p~~~PY~lHY~~-~Dg~-~G~------~g~~~~lEVD~VIGADGANSRvAk~-----idAGDY~~AIAfQERI  183 (401)
T TIGR02028       117 KLELPADPADDPYTLHYVE-EDGK-GGA------SGTKKTLEVDAVIGADGANSRVAKE-----IDAGDYDYAIAFQERI  183 (401)
T ss_pred             EECCCCCCCCCCCEEEEEE-ECCC-CCC------CCCCEEEEEEEEECCCCCCCHHHCC-----CCCCCHHHHHHHHHCC
T ss_conf             6317788877871789870-0687-587------6454068887787078752023111-----3788523444433203


Q ss_pred             CCCC
Q ss_conf             5333
Q gi|254781043|r  243 PLQD  246 (611)
Q Consensus       243 ~l~~  246 (611)
                      +|=|
T Consensus       184 RlPd  187 (401)
T TIGR02028       184 RLPD  187 (401)
T ss_pred             CCCC
T ss_conf             6870


No 305
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.10  E-value=0.025  Score=33.82  Aligned_cols=100  Identities=22%  Similarity=0.362  Sum_probs=48.2

Q ss_pred             CCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH---------HHHHHHHHHHCCCC---CCCCCC
Q ss_conf             210411653425137899999999999899845887799999999998---------89999999986998---132799
Q gi|254781043|r   54 SHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAME---------APQSVYELEHYGVP---FSRNEA  121 (611)
Q Consensus        54 g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~---------a~~~i~~Le~~Gv~---f~r~~~  121 (611)
                      +.|.-..+| +..++     +.|+|+.|+--+-.|.-|-.-|..--++         +-.+=|-|.+-||.   |+|-+.
T Consensus       104 aCTL~d~~G-AVTIG-----n~ErYi~D~AL~~GWrPD~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~  177 (480)
T TIGR01318       104 ACTLNDEGG-AVTIG-----NLERYITDTALAMGWRPDLSHVKPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  177 (480)
T ss_pred             CCHHCCCCC-CEEEC-----CEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             100203888-56872-----421000088984368898877300782789977886025799987517855999747703


Q ss_pred             CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCEEECCCEE
Q ss_conf             8551001464114567876564079866654266789999998-7312303113156
Q gi|254781043|r  122 GKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAEFFIEYFA  177 (611)
Q Consensus       122 G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~i~~~~~~  177 (611)
                             -||... |+- +++|     =|   ++++.. .+++ ..-||++..++++
T Consensus       178 -------iGGLLt-FGI-PsFK-----Ld---K~V~~~-Rr~if~~MGi~F~Ln~Ev  216 (480)
T TIGR01318       178 -------IGGLLT-FGI-PSFK-----LD---KAVLSR-RREIFTAMGIEFKLNTEV  216 (480)
T ss_pred             -------CCCCCC-CCC-CCHH-----HH---HHHHHH-HHHHHHHCCCEEECCCEE
T ss_conf             -------076013-688-8511-----02---789999-999997589278658165


No 306
>KOG1439 consensus
Probab=95.06  E-value=0.0092  Score=36.64  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             32310588989968999999999988982999986898852
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      |+.||||||+|.|+--|.-+..++-.|.+|+.+++.+..+|
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~   41 (440)
T KOG1439           1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGG   41 (440)
T ss_pred             CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCCCCCC
T ss_conf             98751499973773641000002576958999707887776


No 307
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103   Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=94.93  E-value=0.045  Score=32.11  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             88989968999999999988982999986898852
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      |-|||+|+||+.+|+.+.++|.+|-+.|.-+..+|
T Consensus         2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GG   36 (474)
T TIGR02732         2 VAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGG   36 (474)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             57872567789999999738972788524332375


No 308
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.85  E-value=0.039  Score=32.52  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=12.1

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCE
Q ss_conf             23421577158537788853322760
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGL  393 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GL  393 (611)
                      |-+-||.-.+    .|.|++++.||=
T Consensus       278 GSVIVDlAad----qGGN~E~T~pge  299 (510)
T PRK09424        278 GSVIVDLAAA----NGGNCELTVPGE  299 (510)
T ss_pred             CCEEEEECCC----CCCCCCCCCCCE
T ss_conf             9789995255----799710663994


No 309
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627   L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=94.76  E-value=0.055  Score=31.57  Aligned_cols=16  Identities=25%  Similarity=0.314  Sum_probs=7.8

Q ss_pred             EEEEECCCCHHHHHHHH
Q ss_conf             68861117989999985
Q gi|254781043|r  321 IHLYLNHLDPAVLQERL  337 (611)
Q Consensus       321 v~ld~~~~~~~~l~~~~  337 (611)
                      |.|.++.-|+. |+..|
T Consensus       233 v~lEmSGaP~A-~~~gL  248 (341)
T TIGR00692       233 VVLEMSGAPKA-LEQGL  248 (341)
T ss_pred             EEEECCCCCHH-HHHHH
T ss_conf             99864899179-99999


No 310
>KOG4405 consensus
Probab=94.75  E-value=0.033  Score=33.00  Aligned_cols=41  Identities=17%  Similarity=0.169  Sum_probs=34.8

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             23105889899689999999999889829999868988521
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH   55 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~   55 (611)
                      -.+|||+|||.|..-..-|.++++.|.+|+-++..+..+|+
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~   46 (547)
T KOG4405           6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN   46 (547)
T ss_pred             CHHCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf             10343899817984899999860037705860686555776


No 311
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.67  E-value=0.066  Score=31.04  Aligned_cols=52  Identities=19%  Similarity=0.104  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf             12342157715853778885332276034021220335---664304764322-222232156775566
Q gi|254781043|r  367 MGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASV---HGANRLGSNSLI-DLVVFGRAAVIRASE  431 (611)
Q Consensus       367 ~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~---hGanrlggnsl~-~~~vfG~~Ag~~aa~  431 (611)
                      .|||.||.+          ++|++|+.||+|+|+ ...   +|.+.  -..|. .+.-.|++|+.+++.
T Consensus       248 ~G~I~Vd~~----------~~Ts~p~IyA~GD~a-~~~~~~t~~~~--~~~l~~~A~~qgriaa~ni~g  303 (427)
T TIGR03385       248 TGAIWVNEK----------FQTSVPNIYAAGDVA-ESKNIVTKKPA--WIPLAWGANKMGRIVGENIAG  303 (427)
T ss_pred             CCCEECCCC----------CCCCCCCEEEEECEE-ECCCCCCCCCC--EECCHHHHHHHHHHHHHHHCC
T ss_conf             886852765----------543689999982104-11455568842--341568999999999997459


No 312
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=94.41  E-value=0.023  Score=34.04  Aligned_cols=97  Identities=24%  Similarity=0.364  Sum_probs=58.1

Q ss_pred             CCCCCCCCEEEEEECEEEE-CCCHHHHH-------HHHHHHH-CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCH
Q ss_conf             0005344133231058898-99689999-------9999998-8982999986898852104116534251378999999
Q gi|254781043|r    5 SNLKSSYTYVDHSYDVVVV-GAGGAGLR-------ATLGMAE-KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW   75 (611)
Q Consensus         5 ~~~~~~~~~~d~~~DVlVI-G~G~AGl~-------AAi~A~e-~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~   75 (611)
                      ..++.++++.+.+||++|| |+|...=-       |=++.|+ ..++|+||  +.+.||+-+++==|.-..    -+|.+
T Consensus       110 ~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~~iLv--ADIDRGGVFAsi~GTl~L----L~~~~  183 (502)
T TIGR00313       110 KAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADADVILV--ADIDRGGVFASIYGTLKL----LPEEE  183 (502)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE--EECCCCCCHHHHHHHHHH----CCCCC
T ss_conf             999999987520288899826887100053315722478986439767999--750777432433746661----88345


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf             9999989984588779999999999889999999986-998
Q gi|254781043|r   76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHY-GVP  115 (611)
Q Consensus        76 ~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~-Gv~  115 (611)
                      ...+.=++ -+.+..+.++..       +-|+|||++ |+|
T Consensus       184 r~liKG~v-INkfRG~~~vL~-------~GI~~lEelTGiP  216 (502)
T TIGR00313       184 RKLIKGIV-INKFRGNVDVLE-------SGIEKLEELTGIP  216 (502)
T ss_pred             CCEECEEE-ECCCCCCHHHHH-------HHHHHHHHHCCCC
T ss_conf             75003068-835468724434-------4568998854842


No 313
>KOG2755 consensus
Probab=94.30  E-value=0.022  Score=34.22  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             EEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCH
Q ss_conf             8898996899999999998--8982999986898852104
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTV   57 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~   57 (611)
                      .||||||+||.+||-..+.  ..++|+|++..++..|-+.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn   41 (334)
T KOG2755           2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN   41 (334)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf             5998576143258999975388873899964178887761


No 314
>PRK13984 putative oxidoreductase; Provisional
Probab=94.18  E-value=0.022  Score=34.12  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8853322760340212203356643047643222222321567755665420
Q gi|254781043|r  384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK  435 (611)
Q Consensus       384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~  435 (611)
                      ++.+|++||+||+|++.    +|+      ++..++--||.|++++.+|+.+
T Consensus       562 ~~~~Ts~pgVFAgGD~v----~G~------sVV~AIa~GR~AA~~Id~yL~g  603 (604)
T PRK13984        562 EYRQTSVPWLFAGGDIV----HGP------DIIHGVADGYWAAKGIDQYLRK  603 (604)
T ss_pred             CCCCCCCCCEEECCCCC----CCC------HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99877899988777868----762------8999999999999999999775


No 315
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.97  E-value=0.11  Score=29.63  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             310588989968999999999988982999986898852
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS   54 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g   54 (611)
                      ++|||+|+|.|+--+.-+..++-+|.+|+.++|.+..++
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~   43 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS   43 (434)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             300189962668999998886226751799707876675


No 316
>KOG3855 consensus
Probab=93.94  E-value=0.14  Score=28.83  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=25.6

Q ss_pred             EECEEEECCCHHHHHHHHHHHH----CCCCEEEEECCC
Q ss_conf             1058898996899999999998----898299998689
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAE----KGFKTACITKVF   50 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e----~G~~V~lieK~~   50 (611)
                      .|||||+|||..|+.-|.+...    +-.+|+|++-+.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855          36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             CCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECCC
T ss_conf             07789988844778999986249850000146774246


No 317
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.93  E-value=0.12  Score=29.45  Aligned_cols=34  Identities=21%  Similarity=0.158  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCC
Q ss_conf             5889899689999999999889--829999868988
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPT   52 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~   52 (611)
                      .|+|||+|.||++||.++++.+  .+|+|++|.+..
T Consensus         3 kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~   38 (438)
T PRK13512          3 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             099989849999999999943919999999689988


No 318
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=93.91  E-value=0.089  Score=30.20  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=28.6

Q ss_pred             CEEEECCC-----------HHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996-----------899999999998898299998689
Q gi|254781043|r   19 DVVVVGAG-----------GAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G-----------~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|||||||           -||--|..+++|.|..|+||--.+
T Consensus         8 kvLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNp   50 (1089)
T TIGR01369         8 KVLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNP   50 (1089)
T ss_pred             EEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             8999666731131202302478999999876495799975884


No 319
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.84  E-value=0.19  Score=27.99  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf             323105889899689999999999889-8299998689885
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKG-FKTACITKVFPTR   53 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~~~~   53 (611)
                      |...+|++.||-|.+-|.-|+...+.+ .+++.+||-+-.+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~   42 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS   42 (436)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf             87640268870483278999873502575257873478887


No 320
>KOG1336 consensus
Probab=93.20  E-value=0.029  Score=33.34  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             HHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf             98731230311315652000134430124689805870899506724741576
Q gi|254781043|r  163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG  215 (611)
Q Consensus       163 ~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG  215 (611)
                      --+..+|+++.++.++.+=++. ..+   +   ..+|+.  ++=...|||||.
T Consensus       136 ~Yke~gIe~~~~t~v~~~D~~~-K~l---~---~~~Ge~--~kys~LilATGs  179 (478)
T KOG1336         136 FYKEKGIELILGTSVVKADLAS-KTL---V---LGNGET--LKYSKLIIATGS  179 (478)
T ss_pred             HHHHCCCEEEECCEEEEEECCC-CEE---E---ECCCCE--EECCEEEEEECC
T ss_conf             6765382379703058864146-579---9---679835--301069996157


No 321
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85  E-value=0.19  Score=28.06  Aligned_cols=31  Identities=26%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|||+|.|.+|+.+|--+.++|++|.+.+..
T Consensus         9 ~vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~   39 (501)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGCRLRVADTR   39 (501)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             3999833688999999999789849999899


No 322
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=92.63  E-value=0.044  Score=32.19  Aligned_cols=45  Identities=27%  Similarity=0.369  Sum_probs=29.0

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             53322760340212203356643047643222222321567755665
Q gi|254781043|r  386 PERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM  432 (611)
Q Consensus       386 ~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~  432 (611)
                      -...+||||+||=++ .-+||+||+|-- ....++.|+.+++-+.+.
T Consensus       237 t~~~~~NLY~AGMa~-aa~~G~~RMGPi-FGgM~LSG~~~AE~i~e~  281 (283)
T TIGR00292       237 TREVVPNLYVAGMAV-AAVHGLPRMGPI-FGGMLLSGKKVAELILEK  281 (283)
T ss_pred             CCCCCCCCCHHHHHH-HHHCCCCCCCHH-HHHHHHHHHHHHHHHHHH
T ss_conf             212167601110378-765588757545-535655568989999885


No 323
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.44  E-value=0.26  Score=27.15  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|+|.|.+|+.+|--+++.|++|++.+...
T Consensus        19 kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~   50 (476)
T PRK00141         19 RVLVAGAGVSGLGIAKMLSELGCDVVVADDNE   50 (476)
T ss_pred             CEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             88999227889999999997899799998998


No 324
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.08  E-value=0.28  Score=26.98  Aligned_cols=49  Identities=12%  Similarity=0.229  Sum_probs=26.8

Q ss_pred             HHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCC
Q ss_conf             9987312303113156520001344301246898058708995067247415765654
Q gi|254781043|r  162 GQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA  219 (611)
Q Consensus       162 ~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~l  219 (611)
                      ..+...+|+++...-  .+ ++ + +.+-+.    ...+...|.|+.+|||||.-.+.
T Consensus        84 ~~~~~~gv~~~~g~a--~~-~~-~-~~v~V~----~~~~~~~~~a~~iIIATGs~p~~  132 (438)
T PRK07251         84 AMLAGTGVDIYDAEA--HF-VS-N-KVIEVT----AGDEKQELTAETIVINTGAVSNV  132 (438)
T ss_pred             HHHHHCCCEEEEEEE--EE-CC-C-CEEEEE----CCCCEEEEEEEEEEECCCCCCCC
T ss_conf             999748948999799--98-16-8-489995----59972999976898726787866


No 325
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=92.05  E-value=0.31  Score=26.67  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf             2342157715853778885332276034021220
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGC  401 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~  401 (611)
                      .|+..|.+|.+.-  ++.++|++||+||||+|+.
T Consensus       243 ~gl~~~~~G~I~v--d~~~~Ts~~~VyA~GDva~  274 (277)
T pfam07992       243 AGLELDERGYIVV--DEYLRTSVPGIYAAGDVAE  274 (277)
T ss_pred             CCCCCCCCCCEEE--CCCCEECCCCEEEEEECCC
T ss_conf             7924889995867--9297409999999886889


No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.03  E-value=0.28  Score=26.91  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|+|.|.+|+.+|--+.++|++|.+.+...
T Consensus        16 ~v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~   47 (481)
T PRK01438         16 RVVVAGLGVSGFPAADALHELGASVTVVADGD   47 (481)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             89999575889999999996799899997998


No 327
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.98  E-value=0.29  Score=26.83  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             885332276034021220335664304764322222232156775566
Q gi|254781043|r  384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE  431 (611)
Q Consensus       384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~  431 (611)
                      +.++|++||.||+|+|. ++.    -|...+    .-.|++|+.++..
T Consensus       298 ~~~~Ts~p~IyA~GDv~-g~~----~lah~A----~~qg~~aa~~i~g  336 (472)
T PRK06467        298 KQCRTNVPHIFAIGDIV-GQP----MLAHKG----VHEGHVAAEVIAG  336 (472)
T ss_pred             CCCCCCCCCEEECCCCC-CCC----CCHHHH----HHHHHHHHHHHCC
T ss_conf             97535886358611246-887----766799----9999999998669


No 328
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.76  E-value=0.31  Score=26.64  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             3105889899689999999999889829999868
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      .+.-|||||||-.+.+=+-.+.+.|++|.||++.
T Consensus        23 ~klkvLVVGGG~VA~RKi~~Ll~agA~VtVVSP~   56 (222)
T PRK05562         23 NKIKVLVIGGGKAAFIKGKTFLKKGCYVEILSKE   56 (222)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             6766999998799999999998789989998786


No 329
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=91.72  E-value=0.14  Score=28.99  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             6200053441332310588989968999999999988982999986
Q gi|254781043|r    3 NSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus         3 ~~~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      ||.+-|..-.+-+.  .|||||+|.+|+=.|.++++...+|.+..+
T Consensus       171 HS~~Yk~~~~f~GK--rVlVVG~GnSg~DIA~els~~a~~V~ls~R  214 (532)
T pfam00743       171 HSRDYKHPEGFQGK--RVLVIGLGNSGGDIAVELSRTAAQVFLSTR  214 (532)
T ss_pred             EHHHCCCHHHCCCC--EEEEECCCCCCCHHHHHHHHHCCEEEEEEE
T ss_conf             74427986885997--499978889841059999852786899970


No 330
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.64  E-value=0.37  Score=26.11  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=22.5

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             88533227603402122033566430476432222223215677556
Q gi|254781043|r  384 KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS  430 (611)
Q Consensus       384 ~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa  430 (611)
                      +.++|++|+.||+|+|+ ++..    |...+.    -.|++|+.++.
T Consensus       289 ~~~~Ts~~~IyA~GDv~-g~~~----Lah~A~----~eg~~a~~ni~  326 (452)
T TIGR03452       289 EYGRTSARGVWALGDVS-SPYQ----LKHVAN----AEARVVKHNLL  326 (452)
T ss_pred             CCCCCCCCEEEEEECCC-CCCC----CHHHHH----HHHHHHHHHHC
T ss_conf             76786897399974068-8757----700899----99999999970


No 331
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.54  E-value=0.35  Score=26.33  Aligned_cols=32  Identities=19%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|||-|.+|+.+|--+.++|++|.+.++.+
T Consensus        11 ~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~   42 (450)
T PRK02472         11 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   42 (450)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             89999778999999999998869899984886


No 332
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=91.52  E-value=0.36  Score=26.19  Aligned_cols=52  Identities=17%  Similarity=0.164  Sum_probs=28.2

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             234215771585377888533227603402122033566430476432222223215677556
Q gi|254781043|r  368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS  430 (611)
Q Consensus       368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa  430 (611)
                      .||.+|..|.+.-  ++.++|++|+.||+|+|+ ++.    -|...+.    -.|++|+.++.
T Consensus       274 ~gi~~~~~G~I~v--d~~~~Ts~~~IyA~GDv~-g~~----~lah~A~----~qg~ia~~~i~  325 (453)
T PRK07846        274 AGVDVHEDGRVKV--DEYQRTSARGVFALGDVS-SPY----QLKHVAN----HEARVVKHNLL  325 (453)
T ss_pred             CCCCCCCCCCEEE--CCCCCCCCCEEEEEEECC-CCC----CCHHHHH----HHHHHHHHHHH
T ss_conf             4774454685432--674464787299987468-876----7622899----99999999972


No 333
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.86  E-value=0.44  Score=25.65  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=28.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             05889899689999999999889829999868
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      --|||||||-.+.+=+....+.|++|.|+++.
T Consensus        11 k~vLVVGGG~vA~rK~~~Ll~~gA~VtVvsp~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHITVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             86999889899999999998689969998699


No 334
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.84  E-value=0.51  Score=25.26  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=24.5

Q ss_pred             CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCC
Q ss_conf             123031131565200013443012468980587089950672474157656
Q gi|254781043|r  167 NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       167 ~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~  217 (611)
                      .+|+++...-  .+ ++. .+|. +   ...+|+ ..+.|+.+|+|||.-.
T Consensus        90 ~~v~~i~G~a--~f-~~~-~~v~-V---~~~~g~-~~l~a~~ivIATGs~p  131 (441)
T PRK08010         90 PNIDVIDGQA--EF-INN-HSLR-V---HRPDGN-LEIHGEKIFINTGAQS  131 (441)
T ss_pred             CCCEEEEEEE--EE-CCC-CCEE-E---ECCCCC-EEEEEEEEEEECCCCC
T ss_conf             6958999899--98-579-8237-7---648998-9998258999337765


No 335
>KOG3851 consensus
Probab=90.69  E-value=0.27  Score=27.08  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=27.0

Q ss_pred             EEECEEEECCCHHHHHHHHHHHHC-CC-CEEEEECC
Q ss_conf             310588989968999999999988-98-29999868
Q gi|254781043|r   16 HSYDVVVVGAGGAGLRATLGMAEK-GF-KTACITKV   49 (611)
Q Consensus        16 ~~~DVlVIG~G~AGl~AAi~A~e~-G~-~V~lieK~   49 (611)
                      ..|.|||||||.+|+..|-....+ |. +|.+||..
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~   73 (446)
T KOG3851          38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA   73 (446)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCH
T ss_conf             034899986786305789999865689855775521


No 336
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.63  E-value=0.51  Score=25.22  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|+|-|.+|+.+|--+.++|++|.+.+..+
T Consensus        11 ~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~   42 (457)
T PRK01390         11 TVALFGLGGSGLATARALKAGGAEVIAWDDNP   42 (457)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             89999436999999999997899799993992


No 337
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731    Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=90.59  E-value=0.33  Score=26.48  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             58898996899999999998898-29999868988521
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      -|||||.|+=|..++.-++..|. +|.+++...+.-||
T Consensus        23 ~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V~~SN   60 (210)
T TIGR02356        23 HVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHVDLSN   60 (210)
T ss_pred             CEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEECHHH
T ss_conf             65999726145689999982888378998516770101


No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.56  E-value=0.62  Score=24.67  Aligned_cols=43  Identities=19%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             CCCCCCE-EEE-EECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             0534413-323-105889899689999999999889829999868
Q gi|254781043|r    7 LKSSYTY-VDH-SYDVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus         7 ~~~~~~~-~d~-~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      |-..||+ +|. .--|||||||--+.+=+-.+.+.|++|.|+++.
T Consensus         1 m~~~~Pifl~l~~k~vLVvGGG~VA~rK~~~Ll~~ga~VtVvsp~   45 (157)
T PRK06719          1 MYNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             996430689759987999889899999999998787969999998


No 339
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.55  E-value=0.48  Score=25.38  Aligned_cols=32  Identities=22%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|+|.|.+|+.+|--+.++|++|.+.+..+
T Consensus        14 ~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~   45 (487)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (487)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             89999156838999999997869799998982


No 340
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.40  E-value=0.47  Score=25.47  Aligned_cols=30  Identities=23%  Similarity=0.413  Sum_probs=27.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -|+|+|.|.+|+.+|--+.++|++|.+.+.
T Consensus         8 ~v~V~GlG~sG~s~~~~L~~~G~~v~~~D~   37 (438)
T PRK03806          8 NVVIIGLGLTGLSCVDFFLARGVTPRVMDT   37 (438)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             899994578889999999978996999989


No 341
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342   The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds.   This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate .   Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=90.35  E-value=0.49  Score=25.33  Aligned_cols=18  Identities=11%  Similarity=0.619  Sum_probs=9.5

Q ss_pred             EEEEC-CC-CEEEECCCCCC
Q ss_conf             89950-67-24741576565
Q gi|254781043|r  201 IHRFS-AK-LVVLATGGYGR  218 (611)
Q Consensus       201 ~~~i~-Ak-aVILATGG~~~  218 (611)
                      +..++ -+ .+|+-.||+++
T Consensus       115 l~~l~~~~~~li~GAGGAa~  134 (286)
T TIGR00507       115 LSKLKPNQRVLIIGAGGAAK  134 (286)
T ss_pred             HHCCCCCCEEEEEECCHHHH
T ss_conf             40368997799994286789


No 342
>KOG3923 consensus
Probab=90.29  E-value=0.88  Score=23.70  Aligned_cols=44  Identities=30%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCC-------CCEEEEECCCCCCCCCHHCCC
Q ss_conf             05889899689999999999889-------829999868988521041165
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKG-------FKTACITKVFPTRSHTVAAQG   61 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G-------~~V~lieK~~~~~g~s~~A~G   61 (611)
                      -+|.|||+|.-||+.|+...+.+       ++|.+++--+.....|..+.|
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AG   54 (342)
T KOG3923           4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAG   54 (342)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             608997477101568999998654126886227874577865555543464


No 343
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=90.13  E-value=0.18  Score=28.15  Aligned_cols=43  Identities=30%  Similarity=0.418  Sum_probs=28.0

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             322760340212203356643047643222222321567755665
Q gi|254781043|r  388 RFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM  432 (611)
Q Consensus       388 t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~  432 (611)
                      ...||||+||=++| -+||++|+|-. ....+..|+.|++.+.+.
T Consensus       216 eV~pgL~vaGMa~~-av~G~pRMGPi-FGgMllSGkkaAe~i~e~  258 (262)
T COG1635         216 EVYPGLYVAGMAVN-AVHGLPRMGPI-FGGMLLSGKKAAEEILEK  258 (262)
T ss_pred             CCCCCEEEEHHHHH-HHCCCCCCCCH-HHHHHHCHHHHHHHHHHH
T ss_conf             40587376114567-64188656741-355664409999999998


No 344
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.81  E-value=0.28  Score=26.97  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=17.2

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf             1234215771585377888533227603402122
Q gi|254781043|r  367 MGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAG  400 (611)
Q Consensus       367 ~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a  400 (611)
                      +|-|.||.+|          .|+|||+||||+|-
T Consensus       466 rGEIivD~~g----------~T~vpGvFAAGD~T  489 (520)
T COG3634         466 RGEIIVDARG----------ETNVPGVFAAGDCT  489 (520)
T ss_pred             CCCEEEECCC----------CCCCCCEEECCCCC
T ss_conf             7647885578----------76787235337535


No 345
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.80  E-value=0.75  Score=24.13  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|||+|+=|+.-|..+++.|.+|.++.+..
T Consensus         7 kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~~   38 (313)
T PRK06249          7 RIAIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             89999914999999999996699569996755


No 346
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.78  E-value=0.58  Score=24.87  Aligned_cols=32  Identities=22%  Similarity=0.443  Sum_probs=28.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|||-|.+|+.+|--+.++|++|.+.++.+
T Consensus         7 ~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~   38 (445)
T PRK04308          7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL   38 (445)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             89999989999999999997899199997999


No 347
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=89.68  E-value=0.19  Score=28.00  Aligned_cols=45  Identities=27%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             32276034021220335664304764322222232156775566542
Q gi|254781043|r  388 RFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID  434 (611)
Q Consensus       388 t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~  434 (611)
                      -..||||++|=++ ..+||.+|+|-. ....+..|+.|++-+.+..+
T Consensus       211 eV~PGL~v~GMa~-~~v~G~pRMGPi-FGgMllSG~kaAe~i~~~L~  255 (257)
T PRK04176        211 EVYPGLYVAGMAA-NAVHGLPRMGPI-FGGMLLSGKKVAELILEKLK  255 (257)
T ss_pred             CCCCCEEEECHHH-HHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHH
T ss_conf             5347779851104-642398766715-77788744999999999973


No 348
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.33  E-value=0.54  Score=25.07  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             10588989968999999999988982999986
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      .=.+||+|.|.+|+.+|--+.++|++|.+.+.
T Consensus         7 ~~~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~   38 (448)
T PRK03803          7 DGLRIVVGLGKSGMSLVRFLARQGYQFAVTDT   38 (448)
T ss_pred             CCCEEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             99589999899999999999978895999918


No 349
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.02  E-value=0.62  Score=24.69  Aligned_cols=30  Identities=30%  Similarity=0.384  Sum_probs=27.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -|+|+|.|.+|..+|--+.++|.+|++.++
T Consensus         5 kvlV~GlG~SG~s~a~~L~~~g~~v~~~D~   34 (418)
T PRK00683          5 RVVVLGLGVTGKSVARFLAQKGVYVIGVDN   34 (418)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEECC
T ss_conf             699980888799999999978298999829


No 350
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.00  E-value=0.4  Score=25.92  Aligned_cols=18  Identities=11%  Similarity=0.176  Sum_probs=11.9

Q ss_pred             HHHHHHHHCCCCCCCCCC
Q ss_conf             887887513653333222
Q gi|254781043|r  233 GAGMVARAGLPLQDMEFV  250 (611)
Q Consensus       233 G~~mA~~aGa~l~~mEf~  250 (611)
                      .-.||.--||.++-+++.
T Consensus       183 aAkiA~glgA~Vtild~n  200 (371)
T COG0686         183 AAKIAIGLGADVTILDLN  200 (371)
T ss_pred             HHHHHHCCCCEEEEEECC
T ss_conf             999972368706999527


No 351
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=88.82  E-value=0.76  Score=24.09  Aligned_cols=31  Identities=26%  Similarity=0.425  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      .|||||||-.|++=|-.....|++|+++.+.
T Consensus        14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~   44 (210)
T COG1648          14 KVLVVGGGSVALRKARLLLKAGADVTVVSPE   44 (210)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             7999899899999999997469979998787


No 352
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.76  E-value=0.87  Score=23.72  Aligned_cols=31  Identities=32%  Similarity=0.390  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.=|..-|..++..|.+|+|++..
T Consensus         5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~   35 (288)
T PRK08293          5 KVTVAGAGVLGSQIAFQTAFKGFDVTIYDIS   35 (288)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999897889999999999579928999898


No 353
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=88.71  E-value=0.79  Score=23.99  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=15.9

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf             640798666542667899999987312303113
Q gi|254781043|r  142 VQRTCAAADRTGHAILHTLYGQALKNNAEFFIE  174 (611)
Q Consensus       142 ~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~  174 (611)
                      .+.+....+.+...+ ..+++++.+.+.++.-=
T Consensus       104 tkiI~S~H~~~~~~l-~~~~~~~~~~~aDivKi  135 (477)
T PRK09310        104 IKIILSYHTSEHEDI-PQLYNEMLASQADYYKI  135 (477)
T ss_pred             CEEEEEECCCCCHHH-HHHHHHHHHHCCCEEEE
T ss_conf             779998249983039-99999998607998999


No 354
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=88.53  E-value=0.91  Score=23.59  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|-|||+|==|-|-|++|.+.|.+|.+++..+
T Consensus         9 tIGIlGgGQLgrMla~aA~~lG~~v~vldp~~   40 (377)
T PRK06019          9 TIGIIGGGQLGRMLALAAAPLGYKVIVLDPDA   40 (377)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             99998786899999999997899899984898


No 355
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=88.51  E-value=0.87  Score=23.71  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      .|-|||.|-=||..|+..++.|.+|+.+++..
T Consensus         2 kI~ViGlGyVGl~~a~~la~~G~~V~g~D~d~   33 (185)
T pfam03721         2 RIAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ   33 (185)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             79998978748999999994899399997998


No 356
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.26  E-value=0.89  Score=23.67  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|+|+|-|.+|+.+|--+.++|++|.+.++..
T Consensus        16 kv~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             69999787889999999997889799998988


No 357
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.18  E-value=1  Score=23.21  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -|+|||+|.=|..-|..+++.|.+|.++.+
T Consensus         4 kI~IiGaGAvG~~~a~~L~~aG~~V~lv~r   33 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGR   33 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             799989679999999999858998799956


No 358
>KOG1346 consensus
Probab=88.17  E-value=0.16  Score=28.57  Aligned_cols=56  Identities=25%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             0123421577158537788853322760340212203--35664304764322222232156775566542
Q gi|254781043|r  366 NMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCA--SVHGANRLGSNSLIDLVVFGRAAVIRASEMID  434 (611)
Q Consensus       366 ~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~--g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~  434 (611)
                      ..||+++|..-+           .=.++|+||++||-  ++-|+-|..+  .-.++|.||.||++....++
T Consensus       464 ~lGGfrvnaeL~-----------ar~NvwvAGdaacF~D~~LGrRRVeh--hdhavvSGRLAGENMtgAak  521 (659)
T KOG1346         464 KLGGFRVNAELK-----------ARENVWVAGDAACFEDGVLGRRRVEH--HDHAVVSGRLAGENMTGAAK  521 (659)
T ss_pred             CCCCEEEEHEEE-----------CCCCEEEECCHHHHHCCCCCCEECCC--CCCCEEECEECCCCCCCCCC
T ss_conf             037677412000-----------15433650424454053111000032--44324502002654444568


No 359
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=88.08  E-value=1  Score=23.25  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=27.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             889899689999999999889829999868
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      |-|||+|.-|..=|...+..|.+|.+++..
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~   31 (180)
T pfam02737         2 VAVIGAGTMGAGIAQVFARAGLEVVLVDIS   31 (180)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             899997889999999999679939999799


No 360
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=87.92  E-value=0.98  Score=23.38  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             8898996899999999998898299998689
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      |+|||+|.=|+.-|..+++.|.+|.++.+..
T Consensus         1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~   31 (150)
T pfam02558         1 IAILGAGAVGSLYGARLARAGHDVTLIARGR   31 (150)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999668999999999997799289997563


No 361
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.83  E-value=1.2  Score=22.84  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      --|||||.|.-|+.+|.-++..|. ++.|++...+..|+
T Consensus        43 a~VlvvG~GGLG~~~~~yLaaaGvG~i~ivD~D~v~~sN   81 (392)
T PRK07878         43 ARVLVIGAGGLGSPTLLYLAAAGVGTIGIVEFDVVDESN   81 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             978998787578999999998289759998789967455


No 362
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.81  E-value=1.1  Score=23.08  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      --|||||.|.=|..+|.-++..|. ++.+++...+.-|+
T Consensus        25 s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD~D~Ve~SN   63 (337)
T PRK12475         25 KHVLIIGAGALGAANAEALVRAGIGKLTIADRDYVEWSN   63 (337)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCC
T ss_conf             969999777778999999998289869998499831446


No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.79  E-value=1  Score=23.20  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|+|||+|.=|+.-|..+++.|.+|.++...
T Consensus         2 kI~IiGaGaiG~~~a~~L~~ag~~V~li~r~   32 (307)
T PRK06522          2 KIAILGAGAIGGLFGARLAQAGHDVTLVARG   32 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999991499999999998489988999788


No 364
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=87.60  E-value=0.32  Score=26.59  Aligned_cols=81  Identities=17%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCC--EE----EEECCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf             678999999873123031131565200013443012468980587--08----995067247415765654334210640
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG--EI----HRFSAKLVVLATGGYGRAYFSATSAHT  228 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G--~~----~~i~AkaVILATGG~~~ly~~~t~~~~  228 (611)
                      .|...+.++..+.|++++....+.++-+.-+|.   -+.....++  ++    ....+..||-|||=     .+++.   
T Consensus       223 ~i~~~~~~~~~~~G~~vh~~~~~~kveKt~~~d---~~~i~~~~~PGrlPvm~~~~~~d~liwa~GR-----~Pn~~---  291 (475)
T TIGR01421       223 MISEKVVEEYEKEGLEVHKLSKPVKVEKTVEGD---KLVIHFEDGPGRLPVMKEIDDVDELIWAIGR-----KPNTK---  291 (475)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC---EEEEEEECCCCCCCCCCCCCCHHHHHHHCCC-----CCCCC---
T ss_conf             664266899996796021566047998415786---4799996688865310234305678740588-----56735---


Q ss_pred             ECCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             14448878875136533332223
Q gi|254781043|r  229 CTGDGAGMVARAGLPLQDMEFVQ  251 (611)
Q Consensus       229 ~tGdG~~mA~~aGa~l~~mEf~q  251 (611)
                          ++.+ -++|..|-+-.|||
T Consensus       292 ----~L~l-e~~gv~ld~kg~i~  309 (475)
T TIGR01421       292 ----GLGL-EKVGVKLDEKGYII  309 (475)
T ss_pred             ----CCCC-CCCCEEECCCCCEE
T ss_conf             ----5442-13212566887388


No 365
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.53  E-value=1.1  Score=22.94  Aligned_cols=31  Identities=23%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.-|..=|...+..|.+|.|.+..
T Consensus         4 ~VaViGaG~mG~giA~~~a~~G~~V~l~D~~   34 (308)
T PRK06129          4 SIAIVGAGLIGRAWAIVFARAGHRVRLWDAD   34 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             7999777899999999998589938999898


No 366
>PRK07660 consensus
Probab=87.32  E-value=1.2  Score=22.81  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|.|||+|.=|..-|...+.+|.+|.|.+..
T Consensus         5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~   35 (283)
T PRK07660          5 KIVVIGAGQMGSGIAQVCAMAGYDVKVQDLK   35 (283)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999896989999999999669818999798


No 367
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.32  E-value=1.4  Score=22.33  Aligned_cols=38  Identities=32%  Similarity=0.390  Sum_probs=31.8

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      --|||||.|.=|+.+|.-++..|. ++.+++...+.-|+
T Consensus        42 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~Ve~sN   80 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSN   80 (370)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             978998887578999999998289748987389826021


No 368
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.30  E-value=1.6  Score=21.99  Aligned_cols=38  Identities=29%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      .-|+|||.|.-|..+|.-++..|. ++.|++-..+.-|+
T Consensus        33 s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~ve~sN   71 (245)
T PRK05690         33 ARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTVSLSN   71 (245)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             978998777778999999998599659999688678886


No 369
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.00  E-value=1.3  Score=22.60  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.-|..-|...+..|.+|.|++..
T Consensus         5 ~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~   35 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS   35 (282)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999897889999999999579938999799


No 370
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=87.00  E-value=1  Score=23.22  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=27.1

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf             058898996899999999998898-29999868
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKV   49 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~   49 (611)
                      -.|||||+|.|+-.++.++.+.|. ++.|+.+.
T Consensus        20 k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~   52 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             999998675899999999997199822886089


No 371
>PRK07411 hypothetical protein; Validated
Probab=86.92  E-value=1.5  Score=22.13  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=31.5

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      --|||||.|.=|+.+|.-++..|. +..|++...+..|+
T Consensus        39 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~ve~sN   77 (390)
T PRK07411         39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDIVDSSN   77 (390)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             978998887237999999998389759997489946234


No 372
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.90  E-value=1.3  Score=22.55  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.-|..-|...+..|.+|+|++..
T Consensus         5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~   35 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999887688999999999589988999899


No 373
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.89  E-value=1.7  Score=21.88  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCC
Q ss_conf             8898996899999999998898-2999986898852
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRS   54 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g   54 (611)
                      |+|||.|.=|+.+|.-++..|. +..|++...+.-|
T Consensus         2 V~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~Ve~S   37 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPS   37 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             899876788999999999818973999989946664


No 374
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.85  E-value=1.3  Score=22.55  Aligned_cols=31  Identities=35%  Similarity=0.499  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|.|||+|.=|..-|..++..|.+|.|++..
T Consensus         4 kV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~   34 (289)
T PRK09260          4 KIVVVGAGVMGRGIAYVFASSGFQTTLVDIS   34 (289)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             6999796887899999999689988999799


No 375
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.85  E-value=1.4  Score=22.44  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
Q ss_conf             5889899689999999999889-8299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-FKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-~~V~lieK~~   50 (611)
                      +|||||+|.=|..+|..+++.+ .+|.+.++..
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf             289989866679999999857896299984888


No 376
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.84  E-value=1.3  Score=22.52  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      ..-|+|||.|.=|+.+|.-++..|. +..|++...+.-|+
T Consensus        27 ~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SN   66 (209)
T PRK08644         27 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSN   66 (209)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCEECCCC
T ss_conf             2968998887889999999999389818998899901541


No 377
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.83  E-value=1.3  Score=22.58  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      --|||||.|.=|..+|.-++..|. ++.|++...+..|+
T Consensus        25 a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD~D~Ve~SN   63 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSN   63 (339)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCC
T ss_conf             978998777777999999998489829998099924667


No 378
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=86.78  E-value=0.44  Score=25.67  Aligned_cols=60  Identities=18%  Similarity=0.198  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf             2667899999987312303113156520001344301246898058708995067247415765
Q gi|254781043|r  153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~  216 (611)
                      |.-+..+|.+..++.|+.++...+|++--.+ +++|.+++.   +++.-..++|+.+|||||||
T Consensus       261 G~RL~~aL~~~~~~~Gg~~~~g~~V~~~~~~-~~~v~~v~t---~~~~~~~~~A~~~VLATGsF  320 (425)
T PRK05329        261 GIRLQNALRRRFERLGGVLMPGDEVLRATCE-DGRVTGIWT---RNHADIPLRARHFVLATGSF  320 (425)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEE-CCEEEEEEE---CCCCCEEEECCEEEEECCCC
T ss_conf             7999999999999869789669988878986-998999990---27884276137699903776


No 379
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.77  E-value=1.3  Score=22.64  Aligned_cols=32  Identities=22%  Similarity=0.484  Sum_probs=28.2

Q ss_pred             CEEEECCC-----------HHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996-----------899999999998898299998689
Q gi|254781043|r   19 DVVVVGAG-----------GAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G-----------~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|||||||           .+|.-|+-+++|.|.+|+||.-.|
T Consensus         9 kvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NP   51 (1068)
T PRK12815          9 KILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNP   51 (1068)
T ss_pred             EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             8999898815312344656569999999998699899988983


No 380
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.68  E-value=1.5  Score=22.21  Aligned_cols=20  Identities=25%  Similarity=0.599  Sum_probs=14.1

Q ss_pred             CCEEEEECCCCEEEECCCCC
Q ss_conf             87089950672474157656
Q gi|254781043|r  198 TGEIHRFSAKLVVLATGGYG  217 (611)
Q Consensus       198 ~G~~~~i~AkaVILATGG~~  217 (611)
                      +|+.....|+.+|+-.||.|
T Consensus       131 ~GQ~kL~~a~VlivG~GGLG  150 (379)
T PRK08762        131 EGQRRLARARVLLIGAGGLG  150 (379)
T ss_pred             HHHHHHHHCCEEEECCCHHH
T ss_conf             99999973978998887557


No 381
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=86.57  E-value=0.99  Score=23.35  Aligned_cols=28  Identities=18%  Similarity=0.443  Sum_probs=13.0

Q ss_pred             EEEECCCHHHHHHHHHHHHC---CCCEEEEE
Q ss_conf             88989968999999999988---98299998
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEK---GFKTACIT   47 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~---G~~V~lie   47 (611)
                      |.|+|+-++=-..++...++   ..+|..+.
T Consensus         4 i~IlGsTGSIG~~tL~Vi~~~~~~f~v~~ls   34 (379)
T PRK05447          4 ITILGSTGSIGTQTLDVIRRHPDRFRVVALS   34 (379)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             9998569588899999999586875899999


No 382
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.41  E-value=1.5  Score=22.26  Aligned_cols=31  Identities=26%  Similarity=0.222  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.=|..-|..++..|.+|.|.+..
T Consensus         6 ~VaViGAG~MG~giA~~~a~~G~~V~l~D~~   36 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999896699999999999679968999798


No 383
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.29  E-value=1.4  Score=22.29  Aligned_cols=32  Identities=19%  Similarity=0.499  Sum_probs=28.4

Q ss_pred             CEEEECCC-----------HHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996-----------899999999998898299998689
Q gi|254781043|r   19 DVVVVGAG-----------GAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G-----------~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|||||||           .+|.-|+.+++|.|.+|+||.-.|
T Consensus         9 kvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~Np   51 (1063)
T PRK05294          9 KILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNP   51 (1063)
T ss_pred             EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             8999898825103723326569999999998699899987985


No 384
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.29  E-value=1.6  Score=22.06  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.=|..-|..++.+|.+|+|++..
T Consensus         7 ~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~   37 (310)
T PRK06130          7 NLAIIGAGAMGSGIAALFASKGLDVVLIDPM   37 (310)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8989787799999999998589988999799


No 385
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=86.18  E-value=1.2  Score=22.80  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             88989968999999999988982999986898
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      |+|+|.|--|..-|-.+.++| +|+++++.+-
T Consensus         1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~   31 (115)
T pfam02254         1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPE   31 (115)
T ss_pred             CEEECCCHHHHHHHHHHHHCC-CEEEEECCHH
T ss_conf             999878889999999998089-9999999879


No 386
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of  a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.98  E-value=2  Score=21.32  Aligned_cols=39  Identities=33%  Similarity=0.375  Sum_probs=32.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      +.-|+|||.|.=|..+|..++..|. ++.|++...+..|+
T Consensus        21 ~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sN   60 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSN   60 (228)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             4978998877889999999998399758999787455676


No 387
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.71  E-value=1.5  Score=22.12  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             8898996899999999998898299998689
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -+|+|-|.+|+.+|--+.++|.+|.+.+...
T Consensus         3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~   33 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSERND   33 (459)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999548999999999997899599998989


No 388
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.68  E-value=1.6  Score=22.06  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      .++|||.|--|..-|-.+.+.|-+|+++++.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             89998985788999999987899089997688


No 389
>PRK09117 consensus
Probab=85.66  E-value=1.7  Score=21.83  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.=|..-|...+..|.+|.|.+..
T Consensus         4 ~VaViGaG~mG~~iA~~~a~~G~~V~l~D~~   34 (282)
T PRK09117          4 TVGIIGAGTMGNGIAQACAVAGLDVVMVDIS   34 (282)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             7999897799999999999679968999898


No 390
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.64  E-value=1.6  Score=22.02  Aligned_cols=39  Identities=33%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      +.-|+|||.|.=|..+|..++..|. +..|++...+.-|+
T Consensus        11 ~s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~v~~SN   50 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSN   50 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCC
T ss_conf             4978998886368999999998099759997199904544


No 391
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=85.45  E-value=0.83  Score=23.86  Aligned_cols=171  Identities=22%  Similarity=0.279  Sum_probs=94.7

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCHHCCCC-EEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             99689999999999889829999--8689885210411653-42513789999999999989984588779999999999
Q gi|254781043|r   24 GAGGAGLRATLGMAEKGFKTACI--TKVFPTRSHTVAAQGG-IAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAM  100 (611)
Q Consensus        24 G~G~AGl~AAi~A~e~G~~V~li--eK~~~~~g~s~~A~GG-i~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~  100 (611)
                      =||..|.--||.|+.+|++.+++  ||++-..=+-.-|-|+ |--.-+....|+|+.|+-        .     .+.|.+
T Consensus        72 TSGNTGiGLAL~Aa~kGYk~Iiv~PeKmS~eKv~VL~AlGAEivrtPT~a~~d~PeSh~g--------V-----a~rL~~  138 (527)
T TIGR01137        72 TSGNTGIGLALVAAIKGYKCIIVLPEKMSEEKVDVLKALGAEIVRTPTAAAFDSPESHIG--------V-----AKRLVR  138 (527)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCH--------H-----HHHHCC
T ss_conf             888446899999952686399986875461478999981980778788878884865204--------8-----885222


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCC--EEE
Q ss_conf             889999999986998132799855100146411456787656407986665426678999999873123031131--565
Q gi|254781043|r  101 EAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY--FAL  178 (611)
Q Consensus       101 ~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~--~~~  178 (611)
                      +.|.+..=|+++.     |                    ..-|-.||  +.||.+|.+    |+  .|..++.+.  .|-
T Consensus       139 EiPga~KIlDQY~-----N--------------------~~NP~aHY--~~Tg~Ei~~----q~--EGlnlfdk~~~~VA  185 (527)
T TIGR01137       139 EIPGAHKILDQYA-----N--------------------PSNPLAHY--DGTGPEILE----QC--EGLNLFDKLDMFVA  185 (527)
T ss_pred             CCCCCEECCCCCC-----C--------------------CCCCCCCC--CCCHHHHHH----HH--CCCCHHCCCCEEEE
T ss_conf             7888433520047-----8--------------------87861013--410589998----60--57301212117885


Q ss_pred             EEEECCCCCCEEE--EEEEECCCEEEEECCC--CEEEECC--------------CCCCCCCCCCCC--------------
Q ss_conf             2000134430124--6898058708995067--2474157--------------656543342106--------------
Q gi|254781043|r  179 DLIINSEGCCVGV--VAWQLETGEIHRFSAK--LVVLATG--------------GYGRAYFSATSA--------------  226 (611)
Q Consensus       179 ~Li~d~dG~V~Ga--v~~~~~~G~~~~i~Ak--aVILATG--------------G~~~ly~~~t~~--------------  226 (611)
                      ..=+  -|++.|+  ...+.+.+.+..|-|.  .=|||-|              |.|--|.++.+-              
T Consensus       186 g~GT--GGTItGi~ryLK~~~~~~~~ivGaDP~GSila~pE~LN~t~~t~Y~VEGiGyDF~P~vlDR~v~D~w~k~~D~~  263 (527)
T TIGR01137       186 GVGT--GGTITGIARYLKDESNPKVRIVGADPEGSILAQPEELNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKE  263 (527)
T ss_pred             CCCC--CCHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCHH
T ss_conf             0578--83155455654321389338998769853321764655578983148762147768523765254468808816


Q ss_pred             ----------------CEECCHHHHHHHHHCC
Q ss_conf             ----------------4014448878875136
Q gi|254781043|r  227 ----------------HTCTGDGAGMVARAGL  242 (611)
Q Consensus       227 ----------------~~~tGdG~~mA~~aGa  242 (611)
                                      .++.|.++..|+++-.
T Consensus       264 SF~maRrLi~eEGlLvGGS~GsAvvaal~~A~  295 (527)
T TIGR01137       264 SFKMARRLIKEEGLLVGGSSGSAVVAALKVAE  295 (527)
T ss_pred             HHHHHHHHHHHCCEEEECCHHHHHHHHHHHHH
T ss_conf             89999999874472640430358999999987


No 392
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.45  E-value=1.9  Score=21.52  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|-|||.|-=||..|+..++.|.+|+.++...
T Consensus         5 kI~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~   36 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             79998868778999999996889489998999


No 393
>PRK08223 hypothetical protein; Validated
Probab=85.34  E-value=2.1  Score=21.28  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      +.-|+|||.|.-|..+|..++..|. +..|++-..+.-||
T Consensus        27 ~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~velSN   66 (287)
T PRK08223         27 NSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVFELVN   66 (287)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             5968999367557999999998289759997499846344


No 394
>PRK12862 malic enzyme; Reviewed
Probab=85.13  E-value=1.1  Score=23.12  Aligned_cols=27  Identities=15%  Similarity=0.076  Sum_probs=13.4

Q ss_pred             CCCHHHHHHHHHHH--------HCCCCEEEEECCC
Q ss_conf             99689999999999--------8898299998689
Q gi|254781043|r   24 GAGGAGLRATLGMA--------EKGFKTACITKVF   50 (611)
Q Consensus        24 G~G~AGl~AAi~A~--------e~G~~V~lieK~~   50 (611)
                      --|.|-.+-+|+.-        -+|--|.||+-+.
T Consensus        45 tpgva~~c~~i~~~~~~~~~yt~k~n~vavvs~gt   79 (761)
T PRK12862         45 SPGVAAPCLEIVADPANAARYTARGNLVAVVSNGT   79 (761)
T ss_pred             CCCCHHHHHHHHHCHHHHHHHHCCCCEEEEEECCC
T ss_conf             77428999999869798987631474699996896


No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.98  E-value=1.8  Score=21.66  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             588989968999999999988982999986898
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      .|+|+|+|-=|..-|-.++++|.+|+||++.+-
T Consensus         2 ~IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~   34 (455)
T PRK09496          2 KIIILGAGQVGGTLAERLVGENNDVTVIDTDEE   34 (455)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf             799999888999999999868997999989999


No 396
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.87  E-value=1.5  Score=22.18  Aligned_cols=10  Identities=30%  Similarity=0.767  Sum_probs=4.7

Q ss_pred             CEEEECCCCC
Q ss_conf             2474157656
Q gi|254781043|r  208 LVVLATGGYG  217 (611)
Q Consensus       208 aVILATGG~~  217 (611)
                      .+||-+||.+
T Consensus       125 vlIlGaGGaa  134 (275)
T PRK00258        125 ILLLGAGGAA  134 (275)
T ss_pred             EEEECCCCHH
T ss_conf             9998887107


No 397
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.86  E-value=1.9  Score=21.51  Aligned_cols=31  Identities=29%  Similarity=0.283  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.=|..-|...+..|.+|.|++..
T Consensus         4 kV~ViGaG~mG~~IA~~~a~~G~~V~l~D~~   34 (284)
T PRK07819          4 RVGVVGAGQMGSGIAEVCARAGVDVLVFETT   34 (284)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             7999897789999999999579908999798


No 398
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.83  E-value=1.8  Score=21.72  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|-|||.|-=||..|+..+++|.+|+.++..+
T Consensus         2 kI~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             79998978779999999994899489998999


No 399
>PRK07232 malic enzyme; Reviewed
Probab=84.79  E-value=1.3  Score=22.61  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=12.8

Q ss_pred             CCHHHHHHHHHHH--------HCCCCEEEEECCC
Q ss_conf             9689999999999--------8898299998689
Q gi|254781043|r   25 AGGAGLRATLGMA--------EKGFKTACITKVF   50 (611)
Q Consensus        25 ~G~AGl~AAi~A~--------e~G~~V~lieK~~   50 (611)
                      -|.|-.+-+|+.-        -+|--|.||+-+.
T Consensus        40 pgva~~c~~i~~~p~~~~~yt~~~n~vavvs~gt   73 (753)
T PRK07232         40 PGVAAPCLEIAKDPADAYKYTARGNLVAVISNGT   73 (753)
T ss_pred             CCCHHHHHHHHHCHHHHHHHHCCCCEEEEEECCC
T ss_conf             8428999999869798987621475699997896


No 400
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.74  E-value=1.9  Score=21.44  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|+|+|+|.=|+..|..+++.|.+|.++...
T Consensus         2 kI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~   32 (306)
T PRK12921          2 KIAVVGAGAVGGTFGARLLEAGRDVTFLGRS   32 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             8999992499999999998369988999700


No 401
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.74  E-value=2.6  Score=20.57  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             EEEECCCHHH--HHHHHHHHHCCCCEEEEEC
Q ss_conf             8898996899--9999999988982999986
Q gi|254781043|r   20 VVVVGAGGAG--LRATLGMAEKGFKTACITK   48 (611)
Q Consensus        20 VlVIG~G~AG--l~AAi~A~e~G~~V~lieK   48 (611)
                      |++|=||..|  ...|...+++|++|++...
T Consensus         9 valVTGas~GIG~aia~~la~~Ga~V~i~~~   39 (254)
T PRK06463          9 VALITGGSRGIGRAIAEKFLKEGAKVAILYN   39 (254)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf             8999484778999999999988999999649


No 402
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=84.70  E-value=2.1  Score=21.27  Aligned_cols=19  Identities=21%  Similarity=0.413  Sum_probs=11.9

Q ss_pred             HHHHHHHHHCCCCCCCCEE
Q ss_conf             7999997643678654406
Q gi|254781043|r  339 GISESARIFAGVDVTRDPI  357 (611)
Q Consensus       339 ~~~~~~~~~~g~D~~~~~i  357 (611)
                      ...+.++.|.|++|..+.|
T Consensus       255 Qaa~aF~lwtg~~p~~~~~  273 (283)
T COG0169         255 QAAEAFELWTGVEPPVDVM  273 (283)
T ss_pred             HHHHHHHHHHCCCCCHHHH
T ss_conf             9999999984899978999


No 403
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=84.48  E-value=2.6  Score=20.62  Aligned_cols=37  Identities=35%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             58898996899999999998898-29999868988521
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      -|+|||.|.-|...|..++..|. ++.|++...+..++
T Consensus         3 kVlivG~GglG~~~~~~La~~Gvg~i~lvD~D~ve~sN   40 (134)
T pfam00899         3 RVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSN   40 (134)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             89998988899999999999389749999895676322


No 404
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.16  E-value=1.9  Score=21.56  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -|.|||+|+=|..-|-.+++.|.+|.++..
T Consensus         4 kI~IiGaGAiG~~~a~~L~~ag~dV~lv~r   33 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILR   33 (305)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             899988239999999999848997399994


No 405
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=84.12  E-value=1.2  Score=22.92  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=32.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             058898996899999999998898299998689885
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTR   53 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~   53 (611)
                      =.|+|+|=|-.|--.|.+++..|++|+|.|..|+..
T Consensus        24 k~vvV~GYG~~GkGvA~~~rg~Ga~V~V~EvDPi~a   59 (162)
T pfam00670        24 KVAVVCGYGDVGKGCAASLKGQGARVIVTEIDPICA   59 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf             789996787667779998622999899994793069


No 406
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.25  E-value=1.7  Score=21.83  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             5889899689999999999889829999868988
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      -|+|+|-|..|+.||-.+.+.|++|.+.+..+-.
T Consensus         9 kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             7999926651099999999779869998389876


No 407
>PRK06841 short chain dehydrogenase; Provisional
Probab=83.16  E-value=3.1  Score=20.15  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             EEEECCCHH--HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             889899689--9999999998898299998689
Q gi|254781043|r   20 VVVVGAGGA--GLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        20 VlVIG~G~A--Gl~AAi~A~e~G~~V~lieK~~   50 (611)
                      |++|=||..  |...|...+++|++|++++...
T Consensus        17 valVTGas~GIG~aiA~~la~~Ga~V~i~d~~~   49 (255)
T PRK06841         17 VAVVTGGASGIGHAIAELFAAKGARVALLDRSE   49 (255)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             999979677899999999998799999996987


No 408
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.44  E-value=2.7  Score=20.51  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|-|||+|.=|..-|..++..|.+|+|++..+
T Consensus         5 ~VaViGaGtMG~gIA~~~a~aG~~V~l~D~~~   36 (503)
T PRK08268          5 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA   36 (503)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             89997968899999999993899089997998


No 409
>PRK08328 hypothetical protein; Provisional
Probab=82.42  E-value=2.3  Score=20.96  Aligned_cols=39  Identities=31%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      +.-|+|||.|.=|..+|..++..|. +..|++...+.-|+
T Consensus        27 ~s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD~D~ve~SN   66 (230)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGTVLLIDEQTPELSN   66 (230)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEEECCC
T ss_conf             5978998878789999999998489868987487875156


No 410
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=82.29  E-value=3.3  Score=19.94  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|-|||+|==|-|-|++|...|.+|++++-.+
T Consensus         3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~   34 (375)
T COG0026           3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA   34 (375)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             69997686999999999986497799956999


No 411
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730    This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer .   MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=82.22  E-value=1.9  Score=21.46  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      --|||||.|.=||.|+-=++-.|. +.+|++-..+..|+
T Consensus        25 s~vLivG~GGLGCAa~QYLa~AGvG~l~L~DfD~V~lSN   63 (240)
T TIGR02355        25 SKVLIVGLGGLGCAASQYLAAAGVGRLTLVDFDTVSLSN   63 (240)
T ss_pred             CCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCEEHHHH
T ss_conf             567778367034567888864366327886337100112


No 412
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.91  E-value=3.4  Score=19.85  Aligned_cols=38  Identities=34%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             058898996899999999998898-29999868988521
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      --|||||.|.=|+.+|.-++..|. ++.|++-..+.-|+
T Consensus        29 s~VlvvG~GGLG~~~~~yLa~aGvG~i~i~D~D~ve~sN   67 (355)
T PRK05597         29 AKVSVIGAGGLGSPALLYLAGAGVGHITIIDDDVVDLSN   67 (355)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCH
T ss_conf             968998777668999999998499759997299926121


No 413
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=81.60  E-value=3  Score=20.21  Aligned_cols=17  Identities=24%  Similarity=0.364  Sum_probs=9.2

Q ss_pred             HHHHHHHCCCCCCCCEE
Q ss_conf             99997643678654406
Q gi|254781043|r  341 SESARIFAGVDVTRDPI  357 (611)
Q Consensus       341 ~~~~~~~~g~D~~~~~i  357 (611)
                      ...++.|.|++|..+.|
T Consensus       247 ~~qF~lwTG~~p~~e~m  263 (272)
T PRK12550        247 VEQFVLYTGVRPTDELF  263 (272)
T ss_pred             HHHHHHHHCCCCCHHHH
T ss_conf             99999970999999999


No 414
>PRK06057 short chain dehydrogenase; Provisional
Probab=81.60  E-value=3.5  Score=19.77  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=19.9

Q ss_pred             EEEECCCHHHH--HHHHHHHHCCCCEEEEECC
Q ss_conf             88989968999--9999999889829999868
Q gi|254781043|r   20 VVVVGAGGAGL--RATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G~AGl--~AAi~A~e~G~~V~lieK~   49 (611)
                      |+||=||..|+  ..|...+++|++|++.+..
T Consensus         9 valVTGas~GIG~aia~~la~~Ga~Vvi~d~~   40 (255)
T PRK06057          9 VAVITGGASGIGLATARRMRAEGATVVVGDID   40 (255)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             89996848889999999999869989999698


No 415
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.26  E-value=2.5  Score=20.67  Aligned_cols=12  Identities=33%  Similarity=0.708  Sum_probs=7.2

Q ss_pred             CCEEEECCCCCC
Q ss_conf             724741576565
Q gi|254781043|r  207 KLVVLATGGYGR  218 (611)
Q Consensus       207 kaVILATGG~~~  218 (611)
                      +.+||.+||.++
T Consensus       128 ~vlIlGaGGaa~  139 (289)
T PRK12548        128 KLTIIGAGGAAT  139 (289)
T ss_pred             EEEEEECCHHHH
T ss_conf             479995216799


No 416
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.23  E-value=2.6  Score=20.63  Aligned_cols=11  Identities=45%  Similarity=0.881  Sum_probs=5.0

Q ss_pred             CCEEEECCCCC
Q ss_conf             72474157656
Q gi|254781043|r  207 KLVVLATGGYG  217 (611)
Q Consensus       207 kaVILATGG~~  217 (611)
                      +.+||-+||.+
T Consensus       129 ~vlilGaGGaa  139 (284)
T PRK12549        129 RVVQLGAGGAG  139 (284)
T ss_pred             EEEEECCCCHH
T ss_conf             18996566168


No 417
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.19  E-value=3.6  Score=19.68  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             CEEEECCCHHHHHH--HHHHHHCCCCEEEEECC
Q ss_conf             58898996899999--99999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRA--TLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~A--Ai~A~e~G~~V~lieK~   49 (611)
                      -|+||=||..|+-.  |...+++|++|++++..
T Consensus        10 KvalITGassGIG~aiA~~la~~Ga~Vvl~dr~   42 (296)
T PRK05872         10 KVVFVTGAARGVGAELARRLHARGAKVALVDLE   42 (296)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             879992710589999999999879989999899


No 418
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.09  E-value=3.6  Score=19.66  Aligned_cols=37  Identities=32%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             58898996899999999998898-29999868988521
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      -|+|||.|.=|...|..++..|. ++.+++...+..++
T Consensus         1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v~~~N   38 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSN   38 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             99999979899999999999379719999789875001


No 419
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710   ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=81.07  E-value=2.8  Score=20.43  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf             889899689999999999889--829999868
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKG--FKTACITKV   49 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G--~~V~lieK~   49 (611)
                      |.|||+|+=|+.-|..+++.|  .+|++|.+.
T Consensus         2 i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~   33 (332)
T TIGR00745         2 IAIIGAGAVGSLYGARLARAGANHDVTLLARG   33 (332)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             68995178899999998731899518999887


No 420
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.66  E-value=3  Score=20.25  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      .|-|||+|--||..|.-.++.|-+|+++++.+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             15898885568878999987098489995788


No 421
>PRK06483 short chain dehydrogenase; Provisional
Probab=80.65  E-value=3.8  Score=19.56  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=23.1

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899-689999999999889829999868
Q gi|254781043|r   19 DVVVVGA-GGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~-G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|||.|+ +.=|...|...+++|++|++..+.
T Consensus         4 tVlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~   35 (236)
T PRK06483          4 PILITGAGQRIGLALAKHLLAQGQPVIVSYRS   35 (236)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             79997899889999999999889989999598


No 422
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.51  E-value=3.4  Score=19.84  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=27.1

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             058898996899999999998898299998
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      ..+.||||-.=-+.-+-.++++|++|.++-
T Consensus         3 ~~iaviGGD~Rq~~l~~~L~~~g~~V~~~g   32 (296)
T PRK08306          3 MHIAVIGGDARQLELIRKLVELGAKVSLVG   32 (296)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             489997875899999999997799799983


No 423
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.26  E-value=3.5  Score=19.75  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=25.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|-|||+|.=|..=|...+..|.+|.+.+..
T Consensus         9 ~VaVIGaG~MG~giAa~~a~~G~~V~l~D~~   39 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPA   39 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             7999888788899999999479859999698


No 424
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=79.86  E-value=3.6  Score=19.68  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf             1058898996899999999998898-29999868
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKV   49 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~   49 (611)
                      ..-|||||+|-.|-.++-.+.+.|. +|.++.+.
T Consensus        12 ~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt   45 (134)
T pfam01488        12 GKKVLLIGAGEMARLAAKHLLSKGAKKITIANRT   45 (134)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             8989999960999999999997599889995475


No 425
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=79.81  E-value=4  Score=19.39  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|.|||+|.=|..-|.-+++.|-+|.+.....
T Consensus         2 KI~IiGaG~wGtAla~~la~n~~~V~l~~r~~   33 (159)
T pfam01210         2 KIAVLGAGSWGTALAKVLARNGHEVRLWGRDE   33 (159)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             89999969999999999998799899999043


No 426
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=79.40  E-value=4.1  Score=19.30  Aligned_cols=39  Identities=18%  Similarity=0.350  Sum_probs=31.3

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      +-.|||||.|.=|+.+|.-++..|. ++.+++-..+.-|+
T Consensus        19 ~s~VlVvG~GGLG~~v~~~La~aGVg~i~ivD~D~Ve~sN   58 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTED   58 (198)
T ss_pred             HCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             0989998778899999999997499869999599635335


No 427
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.37  E-value=3.4  Score=19.84  Aligned_cols=29  Identities=17%  Similarity=0.082  Sum_probs=25.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             58898996899999999998898299998
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      -|+|+|.|.+|..||--+.++|+.+++..
T Consensus        10 kv~V~GlG~sG~aaa~~L~~~g~~~~v~~   38 (468)
T PRK04690         10 RVALWGWGREGRAAYRALRAQLPAQPLTV   38 (468)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEE
T ss_conf             79998347879999999996699049997


No 428
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=79.07  E-value=4.2  Score=19.24  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=26.5

Q ss_pred             ECEEEEC-CCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             0588989-968999999999988982999986
Q gi|254781043|r   18 YDVVVVG-AGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        18 ~DVlVIG-~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      .-++|+| .|.=|..+|.-++++|++|+|+..
T Consensus        29 ~~~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R   60 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGR   60 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             88999858857899999999983997999958


No 429
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.48  E-value=4.4  Score=19.13  Aligned_cols=36  Identities=33%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             8898996899999999998898-29999868988521
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      |||||+|+=|+-.+--++-.|. ++.|++-..+.-|+
T Consensus         2 VlvvGaGglGce~~k~La~~Gvg~i~iiD~D~Ie~SN   38 (234)
T cd01484           2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSN   38 (234)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCEECCCC
T ss_conf             8999488879999999998399869997599005677


No 430
>PRK08589 short chain dehydrogenase; Validated
Probab=78.48  E-value=4.4  Score=19.12  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             EEEECCC-HHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             8898996-8999999999988982999986
Q gi|254781043|r   20 VVVVGAG-GAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        20 VlVIG~G-~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      +||-|++ .=|...|...+++|++|++.+.
T Consensus         9 alVTGas~GIG~aiA~~la~~Ga~Vv~~d~   38 (272)
T PRK08589          9 AVITGASTGIGQASAIALAQEGAYVLAVDI   38 (272)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             999782569999999999986999999838


No 431
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.14  E-value=3.6  Score=19.68  Aligned_cols=30  Identities=23%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             CEEEECCCHHHHHH-HHHHHHCCCCEEEEEC
Q ss_conf             58898996899999-9999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRA-TLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~A-Ai~A~e~G~~V~lieK   48 (611)
                      -|.+||-|.+|+++ |.-++++|.+|..-++
T Consensus        10 ~ih~iGigG~GmsalA~~l~~~G~~V~gsD~   40 (459)
T PRK00421         10 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDL   40 (459)
T ss_pred             EEEEEEECHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             8999986688899999999968993999889


No 432
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=78.13  E-value=3.8  Score=19.54  Aligned_cols=12  Identities=33%  Similarity=0.678  Sum_probs=7.0

Q ss_pred             CCEEEECCCCCC
Q ss_conf             724741576565
Q gi|254781043|r  207 KLVVLATGGYGR  218 (611)
Q Consensus       207 kaVILATGG~~~  218 (611)
                      +.+|+.+||.++
T Consensus       126 ~~lIlGaGGaa~  137 (288)
T PRK12749        126 TMVLLGAGGAST  137 (288)
T ss_pred             EEEEEECCHHHH
T ss_conf             689982345889


No 433
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.46  E-value=4.7  Score=18.93  Aligned_cols=39  Identities=15%  Similarity=0.258  Sum_probs=32.4

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      ...|||||.|.-|+.+|.-++..|. ++.+++...+.-++
T Consensus        21 ~s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v~~sn   60 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEED   60 (197)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf             0959998878899999999998379869999899187777


No 434
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=77.07  E-value=1.1  Score=23.16  Aligned_cols=61  Identities=15%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCC-C-CCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf             6789999998731230311315652000134-4-301246898058708995067247415765
Q gi|254781043|r  155 AILHTLYGQALKNNAEFFIEYFALDLIINSE-G-CCVGVVAWQLETGEIHRFSAKLVVLATGGY  216 (611)
Q Consensus       155 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~d-G-~V~Gav~~~~~~G~~~~i~AkaVILATGG~  216 (611)
                      .++..|..-+.+++|++-++..+.++-++.. | +|.-++-. ..+++.....-.-.|+-|.|.
T Consensus       228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~-~~d~~~ieLt~dDlVfvTNgs  290 (587)
T COG4716         228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHV-LGDAETIELTPDDLVFVTNGS  290 (587)
T ss_pred             HHHHHHHHHHHHCCCCEEECCEEEEEEECCCCCHHHHHHHHH-HCCCCEEECCCCCEEEEECCE
T ss_conf             889999999987397547256776543114763668899987-357552543787659985560


No 435
>PRK00784 cobyric acid synthase; Provisional
Probab=77.02  E-value=0.42  Score=25.79  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=10.9

Q ss_pred             CHHHHHHHHH--HHHCCCCEEEE
Q ss_conf             6899999999--99889829999
Q gi|254781043|r   26 GGAGLRATLG--MAEKGFKTACI   46 (611)
Q Consensus        26 G~AGl~AAi~--A~e~G~~V~li   46 (611)
                      |=+=++||+.  .+++|.+|.=.
T Consensus        16 GKS~l~aaLCRi~~~~G~~VaPF   38 (492)
T PRK00784         16 GKSTLVAGLCRILARRGLRVAPF   38 (492)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             79999999999999589855785


No 436
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=76.91  E-value=2.7  Score=20.46  Aligned_cols=13  Identities=31%  Similarity=0.250  Sum_probs=5.5

Q ss_pred             CEEEECCCCCCCC
Q ss_conf             2474157656543
Q gi|254781043|r  208 LVVLATGGYGRAY  220 (611)
Q Consensus       208 aVILATGG~~~ly  220 (611)
                      -||.|--|+.+|.
T Consensus        91 ~vv~Ai~G~aGL~  103 (392)
T PRK12464         91 LVVSSIVGVAGLL  103 (392)
T ss_pred             EEEEECCCHHHHH
T ss_conf             8999445353469


No 437
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.86  E-value=4.9  Score=18.83  Aligned_cols=36  Identities=33%  Similarity=0.396  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             8898996899999999998898-29999868988521
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      |||||+|+-|+-.+--++-.|. ++.|++-..+..|+
T Consensus         2 VlvvGaGglG~e~lk~La~~Gvg~i~ivD~D~Ie~SN   38 (312)
T cd01489           2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSN   38 (312)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             8998888889999999998289859997199226101


No 438
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase; InterPro: IPR004572 Protoporphyrinogen oxidase (1.3.3.4 from EC) oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll, in the penultimate step in heme and porphyrin biosynthesis. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.; GO: 0004729 protoporphyrinogen oxidase activity, 0006118 electron transport, 0006779 porphyrin biosynthetic process.
Probab=76.82  E-value=4.6  Score=19.02  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             EECEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCC
Q ss_conf             10588989968999999999988------982999986898852
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEK------GFKTACITKVFPTRS   54 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~------G~~V~lieK~~~~~g   54 (611)
                      ..+++|||+|..|++.+......      +.++++.++.+..+|
T Consensus         2 ~~~~~~~ggg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg   45 (556)
T TIGR00562         2 KKEVVVVGGGISGLCAAYFLSKERPDKNLGVELTLFEADDRVGG   45 (556)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
T ss_conf             74168861761357888887652221247730588724665575


No 439
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=76.70  E-value=4.9  Score=18.80  Aligned_cols=20  Identities=15%  Similarity=0.174  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999998888999999999
Q gi|254781043|r  518 SDLVETLELQNLMINAIATV  537 (611)
Q Consensus       518 ~el~~~~el~~~l~~Ae~~~  537 (611)
                      .++..+=-+.....+|++|.
T Consensus       445 ~dl~~gAni~gf~rVA~Am~  464 (469)
T PTZ00079        445 KDLQAGANIAGFLKVADSYI  464 (469)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             98898212999999999999


No 440
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.65  E-value=4  Score=19.41  Aligned_cols=30  Identities=13%  Similarity=0.055  Sum_probs=24.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -|+|+|-|.+|..+|--+.++|..|++-++
T Consensus         2 Ki~V~GlG~sG~s~a~~L~~~g~~~i~dD~   31 (401)
T PRK03815          2 KISLFGYGKTTKALARFFVKNGGVDIYDDK   31 (401)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEECC
T ss_conf             399984777189999999948797999899


No 441
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=75.99  E-value=5.1  Score=18.68  Aligned_cols=30  Identities=20%  Similarity=0.457  Sum_probs=26.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -|.|+|+|.=|+..|..+++.|.+|+++-.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R   31 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVR   31 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             599987878999999999858995799810


No 442
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.98  E-value=5.1  Score=18.67  Aligned_cols=32  Identities=16%  Similarity=0.164  Sum_probs=28.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58898996899999999998898299998689
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      -|-|||+|.=|..=|...+..|.+|.|.+..+
T Consensus         4 kVAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~p   35 (489)
T PRK07531          4 KAACIGGGVIGGGWAARFLLNGWDVAVFDPHP   35 (489)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             79998718868999999995799699994887


No 443
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.35  E-value=3.7  Score=19.64  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=29.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             8898996899999999998898-29999868988521
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      |||||+|.=|+..|-.+...|. ++.+|+.+.+.-|+
T Consensus         2 vLllGaGtLGc~var~L~~~GV~~it~VD~~~Vs~SN   38 (307)
T cd01486           2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSN   38 (307)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEEEECCEEECCC
T ss_conf             7998577520699999998369858998499885566


No 444
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275   This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=74.71  E-value=3.7  Score=19.58  Aligned_cols=29  Identities=28%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             EEEECCCHHHHHHHHHHHHC--CCCEEEEEC
Q ss_conf             88989968999999999988--982999986
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEK--GFKTACITK   48 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~--G~~V~lieK   48 (611)
                      |=|||+|.-|-+.|..+|++  +.+|+|++=
T Consensus         4 isvIGAGfvGaTTAf~lA~KeLard~VLlDi   34 (308)
T TIGR01763         4 ISVIGAGFVGATTAFLLAEKELARDVVLLDI   34 (308)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             8997068612589999986740671689850


No 445
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.33  E-value=4.1  Score=19.29  Aligned_cols=27  Identities=30%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             588989968999999999988982999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTAC   45 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~l   45 (611)
                      -|+|+|.|.+|+.+|--+.+++..|.+
T Consensus         9 kvlV~GlG~sG~s~a~~L~~~~~~~~v   35 (438)
T PRK04663          9 NVVVVGLGITGLSVVKHLRKTQPQLTV   35 (438)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCCCEE
T ss_conf             499990678589999999966998469


No 446
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=73.84  E-value=3.4  Score=19.86  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=21.8

Q ss_pred             EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf             995067247415765654334210640144488788751-36533332
Q gi|254781043|r  202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME  248 (611)
Q Consensus       202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE  248 (611)
                      ..+..|.||+|  |||+           .|-|.++.+|. ||.+.=-|
T Consensus       206 ~liaGK~vVV~--GYG~-----------cGkG~A~r~rglGA~V~VtE  240 (430)
T pfam05221       206 VMIAGKVAVVC--GYGD-----------VGKGCAASLRGQGARVIVTE  240 (430)
T ss_pred             CEECCCEEEEE--CCCC-----------CCHHHHHHHHHCCCEEEEEC
T ss_conf             13427679995--5675-----------35789999842798899954


No 447
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases,  AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.69  E-value=3.6  Score=19.71  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=22.3

Q ss_pred             EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf             995067247415765654334210640144488788751-36533332
Q gi|254781043|r  202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME  248 (611)
Q Consensus       202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE  248 (611)
                      ..+..|.||+|  |||+           .|-|.++.++. ||.+.=-|
T Consensus       198 ~liaGK~vVV~--GYG~-----------~GkG~A~r~rglGA~V~VtE  232 (413)
T cd00401         198 VMIAGKVAVVA--GYGD-----------VGKGCAQSLRGQGARVIVTE  232 (413)
T ss_pred             HEECCCEEEEE--CCCC-----------CCHHHHHHHHHCCCEEEEEC
T ss_conf             12137779994--5776-----------35688998865898899971


No 448
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=73.64  E-value=5.1  Score=18.72  Aligned_cols=48  Identities=25%  Similarity=0.348  Sum_probs=34.8

Q ss_pred             HHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECC
Q ss_conf             9999873123031131565200013443012468980587089950672474157
Q gi|254781043|r  160 LYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATG  214 (611)
Q Consensus       160 L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATG  214 (611)
                      |...+.+.|++++.+.....++ . ++++.++-   ..+|.  .+.|.-||+|+|
T Consensus       193 L~~~le~~Gi~~~l~~~t~ei~-g-~~~~~~vr---~~DG~--~i~ad~VV~a~G  240 (793)
T COG1251         193 LRRKLEDLGIKVLLEKNTEEIV-G-EDKVEGVR---FADGT--EIPADLVVMAVG  240 (793)
T ss_pred             HHHHHHHHCCEEECCCHHHHHH-C-CCCEEEEE---ECCCC--CCCCEEEEEECC
T ss_conf             9999886060453132024564-5-76403676---05687--344206999623


No 449
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=73.63  E-value=2.6  Score=20.64  Aligned_cols=11  Identities=9%  Similarity=0.295  Sum_probs=4.0

Q ss_pred             HHHHHHHHHCC
Q ss_conf             98788766509
Q gi|254781043|r  470 REKMQRAMQLD  480 (611)
Q Consensus       470 ~~~Lq~iM~~~  480 (611)
                      .+-+.++|+.+
T Consensus       343 ~~iie~~l~~~  353 (385)
T COG0743         343 ARIIEKALERH  353 (385)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999860


No 450
>PRK06197 short chain dehydrogenase; Provisional
Probab=73.50  E-value=5.9  Score=18.27  Aligned_cols=48  Identities=25%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CCCCCCCCCCCCEEEEEECEEEECCCHHH--HHHHHHHHHCCCCEEEEECCC
Q ss_conf             98620005344133231058898996899--999999998898299998689
Q gi|254781043|r    1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAG--LRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus         1 ~~~~~~~~~~~~~~d~~~DVlVIG~G~AG--l~AAi~A~e~G~~V~lieK~~   50 (611)
                      |+||.--....|  |..=-|+||=||.+|  +.+|..++++|++|++..+..
T Consensus         1 ~~~~~~~~~~ip--DL~GK~~lITGa~sGIG~~~A~~La~~ga~Vil~~R~~   50 (306)
T PRK06197          1 MKNTKWTAADIP--DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL   50 (306)
T ss_pred             CCCCCCCHHHCC--CCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             987899865688--98999999916895999999999997849899997989


No 451
>PRK09414 glutamate dehydrogenase; Provisional
Probab=72.86  E-value=6.1  Score=18.18  Aligned_cols=19  Identities=16%  Similarity=0.106  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998888999999999
Q gi|254781043|r  519 DLVETLELQNLMINAIATV  537 (611)
Q Consensus       519 el~~~~el~~~l~~Ae~~~  537 (611)
                      ++..+--+.....+|++|.
T Consensus       423 ~l~~gA~i~g~~rVA~Am~  441 (446)
T PRK09414        423 NYVLGANIAGFVKVADAML  441 (446)
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             8999858999999999999


No 452
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=72.57  E-value=0.7  Score=24.34  Aligned_cols=10  Identities=30%  Similarity=0.673  Sum_probs=4.7

Q ss_pred             HHCCCCEEEE
Q ss_conf             9889829999
Q gi|254781043|r   37 AEKGFKTACI   46 (611)
Q Consensus        37 ~e~G~~V~li   46 (611)
                      +..|.+|.=.
T Consensus        27 ~~~G~~V~PF   36 (486)
T COG1492          27 ARRGYRVAPF   36 (486)
T ss_pred             HHCCCCCCCC
T ss_conf             7357754787


No 453
>PRK10637 cysG siroheme synthase; Provisional
Probab=72.52  E-value=6.2  Score=18.13  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             058898996899999999998898299998689
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      --|||||+|--+.+=+-.+.+.|++|.|+....
T Consensus        13 k~vLVVGGG~vA~rK~~~Ll~agA~VtViap~~   45 (457)
T PRK10637         13 RDCLIVGGGDVAERKARLLLDAGARLTVNALAF   45 (457)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             869998998999999999987898799989989


No 454
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=72.17  E-value=4.1  Score=19.29  Aligned_cols=40  Identities=20%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             5344133231058898996899999999998898299998
Q gi|254781043|r    8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus         8 ~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      .+.++--..-..|||+|-|.||.+-|--+-..|..|+-|+
T Consensus       392 ~~plp~~~tg~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~ID  431 (1048)
T PRK06567        392 YAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAID  431 (1048)
T ss_pred             CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf             6878888899648999248652018899874787289865


No 455
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=71.87  E-value=6.4  Score=18.03  Aligned_cols=69  Identities=17%  Similarity=0.108  Sum_probs=34.8

Q ss_pred             CHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             68999999999988--9829999868988521041165342513789999999999989984588779999999999889
Q gi|254781043|r   26 GGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAP  103 (611)
Q Consensus        26 G~AGl~AAi~A~e~--G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~  103 (611)
                      -..+|..|+...+.  ..+++|+.-.    +.+++|++-+            .. +.+.     .-..++-...+.....
T Consensus        35 ~~~~L~~al~~~~~d~~vr~vVltg~----g~~F~AGaDl------------~e-~~~~-----~~~~~~~~~~~~~~~~   92 (715)
T PRK11730         35 TLASLGEALDALEAQSDLKGLLLTSA----KDAFIVGADI------------TE-FLSL-----FAVPEEELSQWLHFAN   92 (715)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECC----CCEEEECCCH------------HH-HHHC-----CCCCHHHHHHHHHHHH
T ss_conf             99999999999850999759999789----9815727087------------87-8525-----4688788988888889


Q ss_pred             HHHHHHHHCCCCC
Q ss_conf             9999999869981
Q gi|254781043|r  104 QSVYELEHYGVPF  116 (611)
Q Consensus       104 ~~i~~Le~~Gv~f  116 (611)
                      ..++.++.+..|.
T Consensus        93 ~~~~~ie~~~kPv  105 (715)
T PRK11730         93 SIFNRLEDLPVPT  105 (715)
T ss_pred             HHHHHHHCCCCCE
T ss_conf             9999997199988


No 456
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=71.71  E-value=6.5  Score=18.01  Aligned_cols=28  Identities=29%  Similarity=0.381  Sum_probs=19.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             5889899689999999999889829999
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACI   46 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~li   46 (611)
                      -|+|-|.|.-|..+|..+.+.|++|++.
T Consensus        30 ~VaIqG~GnVG~~~A~~l~~~Gakvvv~   57 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEEGAKLIVA   57 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             9999898799999999999679979998


No 457
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.54  E-value=6.6  Score=17.98  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             889899-689999999999889829999868
Q gi|254781043|r   20 VVVVGA-GGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~-G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      +||-|+ +.=|...|.+.+++|++|++..+.
T Consensus         8 alVTG~s~GIG~aia~~la~~Ga~V~i~~r~   38 (258)
T PRK07890          8 VVVSGVGPGLGTTLAVRAAREGADVVLAART   38 (258)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9996856589999999999879989999798


No 458
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.08  E-value=3.7  Score=19.60  Aligned_cols=34  Identities=35%  Similarity=0.549  Sum_probs=21.3

Q ss_pred             EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf             995067247415765654334210640144488788751-36533332
Q gi|254781043|r  202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME  248 (611)
Q Consensus       202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE  248 (611)
                      ..+..|.||+|  |||+           .|-|.++.+|. ||.+.=-|
T Consensus       204 ~llaGK~vVV~--GYG~-----------~GkG~A~~arg~GA~ViVtE  238 (427)
T PRK05476        204 VLIAGKVVVVA--GYGD-----------VGKGSAQRLRGLGARVIVTE  238 (427)
T ss_pred             CEECCCEEEEE--CCCC-----------CCCHHHHHHHCCCCEEEEEE
T ss_conf             21257379995--5665-----------56008998741898799980


No 459
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=70.49  E-value=3.5  Score=19.75  Aligned_cols=34  Identities=32%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             EEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHH-CCCCCCCC
Q ss_conf             995067247415765654334210640144488788751-36533332
Q gi|254781043|r  202 HRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA-GLPLQDME  248 (611)
Q Consensus       202 ~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~a-Ga~l~~mE  248 (611)
                      ..+..|.||+|  |||.           .|-|.++.++. ||.+.=-|
T Consensus       250 ~liaGK~vVV~--GYG~-----------~GkG~A~~~rg~GA~ViVtE  284 (476)
T PTZ00075        250 VMIAGKTVVVC--GYGD-----------VGKGCAQALRGFGARVVVTE  284 (476)
T ss_pred             CEECCCEEEEE--ECCC-----------CCHHHHHHHCCCCCEEEEEC
T ss_conf             34547589995--0453-----------01214766535897899961


No 460
>PRK04940 hypothetical protein; Provisional
Probab=70.48  E-value=6.1  Score=18.17  Aligned_cols=31  Identities=16%  Similarity=0.098  Sum_probs=23.2

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             0588989968999999999988982999986
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -++|+||+|+.|..|..-+-.-|.+.+|+..
T Consensus        60 ~~~liiGssLGGyyA~~l~~~~~~KaVliNP   90 (179)
T PRK04940         60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNP   90 (179)
T ss_pred             CCCEEEECCCHHHHHHHHHHHCCCCEEEECC
T ss_conf             8837995472389999999982986799889


No 461
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.99  E-value=7.1  Score=17.76  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=10.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             322222232156775566542026
Q gi|254781043|r  414 SLIDLVVFGRAAVIRASEMIDKSS  437 (611)
Q Consensus       414 sl~~~~vfG~~Ag~~aa~~~~~~~  437 (611)
                      ++...++.++.--+.+-+++....
T Consensus       280 ~i~GS~~g~~~d~~e~l~f~~~g~  303 (339)
T COG1064         280 SIVGSLVGTRADLEEALDFAAEGK  303 (339)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCC
T ss_conf             899972489999999999998189


No 462
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=69.80  E-value=7.1  Score=17.74  Aligned_cols=18  Identities=22%  Similarity=0.088  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHCCCCCC
Q ss_conf             999999999996262550
Q gi|254781043|r  530 MINAIATVYSAEARKESR  547 (611)
Q Consensus       530 l~~Ae~~~~aal~R~ESR  547 (611)
                      ..+|.++.++|+..--.|
T Consensus       389 ~~vA~AVa~aA~~~GvA~  406 (432)
T COG0281         389 SRVAVAVAKAAMEEGVAR  406 (432)
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             999999999999728666


No 463
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel  domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=69.72  E-value=6.6  Score=17.96  Aligned_cols=31  Identities=32%  Similarity=0.403  Sum_probs=26.3

Q ss_pred             ECEEEECCCHHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf             0588989968999999999988-982999986
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEK-GFKTACITK   48 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~-G~~V~lieK   48 (611)
                      --|+|+|.|.+|...|--+++. +.+|.+.++
T Consensus        24 ~~v~v~G~G~vg~~ia~ll~~~~~k~V~~~d~   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf             58999778604289999999817970787155


No 464
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.60  E-value=6.2  Score=18.14  Aligned_cols=103  Identities=9%  Similarity=0.144  Sum_probs=44.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC------CCCCCCCHHHHHHH
Q ss_conf             3356643047643222222321---56775566542026566764002357888631010------37887136899987
Q gi|254781043|r  402 ASVHGANRLGSNSLIDLVVFGR---AAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLR------HADGHVPTAALREK  472 (611)
Q Consensus       402 ~g~hGanrlggnsl~~~~vfG~---~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~i~~~  472 (611)
                      .|+|=.|...-.-|.|-...-+   -+-..+..+++.....+....+.---...|+..+.      -...+.++.++-+.
T Consensus       444 iG~HFfnP~~~m~LVEVi~g~~Ts~et~~~~~~~~~~lgK~pv~v~d~pGFi~NRil~~~~~ea~~l~~eG~~~~~ID~a  523 (706)
T PRK11154        444 IGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVKDGAGFYVNRILAPYMNEAARLLLEGEPIEHIDAA  523 (706)
T ss_pred             EEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             55442577442642799437898389999999999975987899632374179999999999999999769999999999


Q ss_pred             HHHHHHCCCEEEE--CHHHHHHHHHHHHHHHHHHH
Q ss_conf             8876650972687--58999999999999999984
Q gi|254781043|r  473 MQRAMQLDAGVFR--TQDSLSDGCRNLSCLWDEMA  505 (611)
Q Consensus       473 Lq~iM~~~~gi~R--~~~~L~~al~~L~~l~~~~~  505 (611)
                      +++ .---+|+++  +.-+|..++...+.+.+.+.
T Consensus       524 ~~~-~G~pmGPf~l~D~vGlDv~~~v~~~l~~~~g  557 (706)
T PRK11154        524 LVK-FGFPVGPITLLDEVGIDVGTKIIPILEAALG  557 (706)
T ss_pred             HHH-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf             997-5998785688775267889999999998728


No 465
>pfam06408 consensus
Probab=69.19  E-value=7.4  Score=17.66  Aligned_cols=93  Identities=18%  Similarity=0.255  Sum_probs=61.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHC---CCCC
Q ss_conf             5889899689999999999889-----8299998689885210411653425137899999999999899845---8877
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGS---DWLG   90 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g---~~l~   90 (611)
                      -||+||.|.=|-. -+-+-++-     .++++|++..-...-..+..-|+.......++|+....+.-.++.|   +++.
T Consensus         3 ~Iv~iGfGSIgq~-~LPLl~rH~~~~~~~Itiid~~d~~~~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~gdflv   81 (471)
T pfam06408         3 PILMIGFGSIGRG-TLPLIERHFKFDRSNIVVIDPRDTKKDRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGGQGFCV   81 (471)
T ss_pred             CEEEECCCHHHHH-HHHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             7799875716742-067888760788789899767875456677875697688614587889999999862677788799


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999998899999999869981
Q gi|254781043|r   91 DVDAIQYLAMEAPQSVYELEHYGVPF  116 (611)
Q Consensus        91 d~~lv~~~~~~a~~~i~~Le~~Gv~f  116 (611)
                      |-..    --.+.+.++|+.+.|+.+
T Consensus        82 nLSv----niss~~ii~~C~e~GvlY  103 (471)
T pfam06408        82 NLSV----DTSSLDLMRLCREHGVLY  103 (471)
T ss_pred             EEEC----CCCHHHHHHHHHHHCCEE
T ss_conf             8011----578899999999809877


No 466
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=68.25  E-value=7.7  Score=17.53  Aligned_cols=39  Identities=28%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
Q ss_conf             1058898996899999999998898-29999868988521
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGF-KTACITKVFPTRSH   55 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~-~V~lieK~~~~~g~   55 (611)
                      +.-|+|||-|.-|.+|+=++++.|. +..||++..+.-++
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN   69 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTN   69 (263)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECHHCCCCC
T ss_conf             0948999458453999999998188818997120102223


No 467
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967    This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=67.80  E-value=5.7  Score=18.38  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             105889899689999999999889829999868
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      ...|.|||+|.=|---|--|++.|-.|.|-+..
T Consensus         5 ~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r   37 (508)
T TIGR02279         5 VVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIR   37 (508)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf             106899646852103899998259848872288


No 468
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms.  Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent.  As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=67.78  E-value=7.9  Score=17.47  Aligned_cols=31  Identities=29%  Similarity=0.410  Sum_probs=27.7

Q ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             0588989968999999999988982999986
Q gi|254781043|r   18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      --|+|-|.|.-|..+|..+.+.|++|+-++-
T Consensus        24 ~~vaVqGfGnVG~~~a~~l~~~GakvvavsD   54 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD   54 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9999989889999999999985998999985


No 469
>PRK07831 short chain dehydrogenase; Provisional
Probab=66.78  E-value=8.2  Score=17.34  Aligned_cols=31  Identities=26%  Similarity=0.208  Sum_probs=22.4

Q ss_pred             CEEEECCCH--HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             588989968--9999999999889829999868
Q gi|254781043|r   19 DVVVVGAGG--AGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~--AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      =+||.|++.  =|...|...+++|++|++.+..
T Consensus        18 valVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~   50 (261)
T PRK07831         18 VVVVTAAAGTGIGSATARRALEEGADVVISDIH   50 (261)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             499949996478999999999879989998087


No 470
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.75  E-value=8.2  Score=17.34  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             EEEECCCHHH--HHHHHHHHHCCCCEEEEECC
Q ss_conf             8898996899--99999999889829999868
Q gi|254781043|r   20 VVVVGAGGAG--LRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G~AG--l~AAi~A~e~G~~V~lieK~   49 (611)
                      |++|=||..|  ...|...+++|++|++....
T Consensus         7 valITGas~GIG~aiA~~la~~Ga~V~i~~r~   38 (235)
T PRK07326          7 AALVTGGSKGIGFAVAEALAAAGYRVAICARD   38 (235)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99993826799999999999879999999898


No 471
>PRK06484 short chain dehydrogenase; Validated
Probab=66.66  E-value=8.3  Score=17.33  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             EEEECCCHH--HHHHHHHHHHCCCCEEEEECC
Q ss_conf             889899689--999999999889829999868
Q gi|254781043|r   20 VVVVGAGGA--GLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G~A--Gl~AAi~A~e~G~~V~lieK~   49 (611)
                      |+||=||..  |...|...+++|++|+++++.
T Consensus         7 valVTGas~GIG~aiA~~la~~Ga~V~~~dr~   38 (530)
T PRK06484          7 VVLVTGAAGGIGRACCQRFARAGDRVVMADRD   38 (530)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99997836689999999999879999999688


No 472
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.22  E-value=8.4  Score=17.27  Aligned_cols=30  Identities=13%  Similarity=0.154  Sum_probs=22.3

Q ss_pred             EEEECCC---HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8898996---89999999999889829999868
Q gi|254781043|r   20 VVVVGAG---GAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G---~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      +||.|++   .=|...|..++++|++|++..+.
T Consensus        10 alITGaa~~~GIG~aiA~~La~~GA~V~i~~~~   42 (271)
T PRK06505         10 GLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             999799998549999999999869999998186


No 473
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=65.26  E-value=8.8  Score=17.15  Aligned_cols=39  Identities=13%  Similarity=0.262  Sum_probs=25.2

Q ss_pred             CEEEEEECEEEECCCHHHHH--HHHHHHHCCCCEEEEECCC
Q ss_conf             13323105889899689999--9999998898299998689
Q gi|254781043|r   12 TYVDHSYDVVVVGAGGAGLR--ATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        12 ~~~d~~~DVlVIG~G~AGl~--AAi~A~e~G~~V~lieK~~   50 (611)
                      ++|+.+=-|++|=||..|+-  .|...+++|++|++++...
T Consensus         3 ~~~~L~gKvalVTGgs~GIG~aia~~la~~Ga~V~~~d~~~   43 (266)
T PRK06171          3 TWLNLQGKIIIVTGGSSGIGLAIVEELLAQGANVQMVDIHG   43 (266)
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             86389999799947787899999999998799999997885


No 474
>PRK05693 short chain dehydrogenase; Provisional
Probab=65.15  E-value=8.8  Score=17.14  Aligned_cols=30  Identities=17%  Similarity=0.367  Sum_probs=19.7

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             889899-689999999999889829999868
Q gi|254781043|r   20 VVVVGA-GGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~-G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      |||-|+ ..=|...|.+.+++|.+|++..+.
T Consensus         4 vlITGassGIG~alA~~la~~G~~V~~~~R~   34 (274)
T PRK05693          4 VLITGCSSGIGRALADAFKAAGYEVWATARK   34 (274)
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9994888589999999999879999999799


No 475
>TIGR00518 alaDH alanine dehydrogenase; InterPro: IPR008141 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0000286 alanine dehydrogenase activity, 0006118 electron transport.
Probab=64.92  E-value=4.8  Score=18.86  Aligned_cols=36  Identities=11%  Similarity=0.115  Sum_probs=21.1

Q ss_pred             CCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             413323105889899689999999999889829999868988
Q gi|254781043|r   11 YTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT   52 (611)
Q Consensus        11 ~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~   52 (611)
                      .++.+.++-|-+.-+|.+      +...+|-+|++-+-....
T Consensus         7 ~e~k~~e~~~~~~p~g~~------~l~~~gh~~~~~~g~g~g   42 (372)
T TIGR00518         7 KEIKNNEFRVALTPGGVA------ELLSRGHEVLVEAGAGLG   42 (372)
T ss_pred             CCCCCCCCEEEECCHHHH------HHHHCCCEEEEECCCCCC
T ss_conf             422465322432623589------886166546754166556


No 476
>KOG1371 consensus
Probab=64.85  E-value=8.5  Score=17.26  Aligned_cols=31  Identities=26%  Similarity=0.547  Sum_probs=27.0

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             588989-9689999999999889829999868
Q gi|254781043|r   19 DVVVVG-AGGAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG-~G~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      -|||.| +|.-|.-+++++.++|..|++++-.
T Consensus         4 ~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl   35 (343)
T KOG1371           4 HVLVTGGAGYIGSHTVLALLKRGYGVVIVDNL   35 (343)
T ss_pred             EEEEECCCCCEEHHHHHHHHHCCCCEEEEECC
T ss_conf             79996687631059999998679817998243


No 477
>pfam05728 UPF0227 Uncharacterized protein family (UPF0227). Despite being classed as uncharacterized proteins, the members of this family are almost certainly enzymes that are distantly related to the pfam00561.
Probab=64.68  E-value=9  Score=17.08  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=19.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      ++++|||.+.|..|..=|-+-+.+.+||..
T Consensus        60 ~~~LiGSSLGGfyAt~lae~~~~~aVLINP   89 (187)
T pfam05728        60 NPLLVGSSLGGYYATWLGFRCGLRQVLFNP   89 (187)
T ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEECC
T ss_conf             748994270799999999863987799758


No 478
>PRK08017 short chain dehydrogenase; Provisional
Probab=64.62  E-value=9  Score=17.07  Aligned_cols=30  Identities=27%  Similarity=0.594  Sum_probs=20.3

Q ss_pred             EEEECCC-HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8898996-89999999999889829999868
Q gi|254781043|r   20 VVVVGAG-GAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G-~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      |||.|++ .=|...|.+.+++|.+|+++.+.
T Consensus         5 vlITGassGIG~a~A~~la~~G~~V~~~~r~   35 (256)
T PRK08017          5 VLITGCSSGIGLESALELKRQGFRVLAGCRK   35 (256)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9996587689999999999879999999699


No 479
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=63.97  E-value=6.1  Score=18.21  Aligned_cols=15  Identities=13%  Similarity=0.071  Sum_probs=7.8

Q ss_pred             EEEEEE-C----CCCHHHHH
Q ss_conf             468861-1----17989999
Q gi|254781043|r  320 HIHLYL-N----HLDPAVLQ  334 (611)
Q Consensus       320 ~v~ld~-~----~~~~~~l~  334 (611)
                      -+||+. +    +++++.++
T Consensus       156 ~iYLEaGSGa~~~vp~~vi~  175 (231)
T pfam01884       156 IFYLEAGSGAPGPVPEEVIA  175 (231)
T ss_pred             EEEEECCCCCCCCCCHHHHH
T ss_conf             89997589999998999999


No 480
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.61  E-value=9.4  Score=16.95  Aligned_cols=31  Identities=19%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             CEEEECCCHHHHH--HHHHHHHCCCCEEEEECC
Q ss_conf             5889899689999--999999889829999868
Q gi|254781043|r   19 DVVVVGAGGAGLR--ATLGMAEKGFKTACITKV   49 (611)
Q Consensus        19 DVlVIG~G~AGl~--AAi~A~e~G~~V~lieK~   49 (611)
                      -|+||=||..|+-  .|...+++|++|+++...
T Consensus         9 KvalVTGas~GIG~aia~~la~~Ga~Vv~~~~~   41 (251)
T PRK12481          9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA   41 (251)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             989994867689999999999869999997898


No 481
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=63.34  E-value=9.5  Score=16.92  Aligned_cols=29  Identities=24%  Similarity=0.428  Sum_probs=26.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             58898996899999999998898299998
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      .|||++.|-..+++.-++.+.|.+++++-
T Consensus         3 kvLIanrGeiA~ri~rt~re~gi~~v~i~   31 (109)
T pfam00289         3 KVLVANRGEIAVRIIRALRELGIETVAVN   31 (109)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             89998887999999999998699799996


No 482
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=63.30  E-value=6.6  Score=17.95  Aligned_cols=20  Identities=10%  Similarity=-0.019  Sum_probs=8.8

Q ss_pred             CCCCCEECCHHHHHHHHHCC
Q ss_conf             21064014448878875136
Q gi|254781043|r  223 ATSAHTCTGDGAGMVARAGL  242 (611)
Q Consensus       223 ~t~~~~~tGdG~~mA~~aGa  242 (611)
                      +.||....|.=+..+-..+.
T Consensus        87 s~np~~lig~~~~aa~~~~~  106 (229)
T PRK04169         87 SRDPYWIIGAQVEAAKEYGD  106 (229)
T ss_pred             CCCCHHHHHHHHHHHHHHHC
T ss_conf             89913667899989987510


No 483
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=63.19  E-value=9.6  Score=16.91  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=26.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             588989968999999999988982999986
Q gi|254781043|r   19 DVVVVGAGGAGLRATLGMAEKGFKTACITK   48 (611)
Q Consensus        19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK   48 (611)
                      -|.|||-|+=|-+-|+++++.|.+|.-++.
T Consensus         3 kI~IiGlGLIGgSla~al~~~~~~V~g~d~   32 (280)
T PRK07417          3 NIGIVGLGLIGGSLGLDLRSLGHTVYGVSR   32 (280)
T ss_pred             EEEEEECCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             899993185799999999968997999979


No 484
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454    Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=63.10  E-value=5.9  Score=18.28  Aligned_cols=98  Identities=20%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC--CCEE-ECCCCCCCCCCCCCEEECC
Q ss_conf             688611179899999853799999764367865440675203310012342157--7158-5377888533227603402
Q gi|254781043|r  321 IHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNY--WGEV-LDANSKNPERFAPGLMAIG  397 (611)
Q Consensus       321 v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~--~g~v-~~~~~~~~~t~i~GLyAaG  397 (611)
                      |-+|++  +++.++..|   .+....|-|+|+.-           .+-||.+..  ..+. +....-|..-...|-|=.-
T Consensus       492 l~~DvT--~e~~v~~~f---~~v~~~yGGvD~vv-----------~nAGi~~S~p~~~t~r~~~W~l~~di~atG~FLVa  555 (709)
T TIGR02632       492 LKLDVT--DEEAVKAAF---AEVALAYGGVDIVV-----------NNAGIAVSSPLEETERLEEWDLNLDILATGYFLVA  555 (709)
T ss_pred             EEEEEC--CHHHHHHHH---HHHHHHHCCEEEEE-----------ECCCHHCCCCCHHHHHHHHHHHCCEEEEECCHHHH
T ss_conf             276317--589999999---99999749847876-----------52530105770232215543201201012003588


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             12203356643047643222222321567755665420
Q gi|254781043|r  398 EAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK  435 (611)
Q Consensus       398 e~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~  435 (611)
                      .-|. -+.=.--||||-..=+.+-+-.|++++..|+..
T Consensus       556 reA~-r~~~~Q~lGG~~VfiaSkNav~A~kn~~AY~aa  592 (709)
T TIGR02632       556 REAA-RLMRKQGLGGNIVFIASKNAVVAGKNASAYSAA  592 (709)
T ss_pred             HHHH-HHHHHCCCCCCEEEECCEEEEEECCCCCHHHHH
T ss_conf             8999-999731798556776110001117884055589


No 485
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=62.73  E-value=9.8  Score=16.85  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEE
Q ss_conf             889899689999999999889829999868988521041165342
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA   64 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~   64 (611)
                      |+|=|.|..|..+|.-+.+.|++|+-|+    ..+++++..-|++
T Consensus        41 vaIQGfGnVG~~aA~~l~e~GakvVaVs----D~~G~i~~~~Gld   81 (254)
T cd05313          41 VAISGSGNVAQYAAEKLLELGAKVVTLS----DSKGYVYDPDGFT   81 (254)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEE----CCCCEEECCCCCC
T ss_conf             9998977999999999997799799998----5785088799998


No 486
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.60  E-value=9.8  Score=16.84  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             88989968999999999988982999
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTAC   45 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~l   45 (611)
                      |+|+|.|.+|+.+|--+++.+..|+.
T Consensus         9 v~V~GlG~sG~a~~~~L~~~~~~~~~   34 (450)
T PRK01368          9 IGVFGLGKTGISVYEELQNKYDLIVY   34 (450)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEE
T ss_conf             89995878799999999719998999


No 487
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=62.56  E-value=8.6  Score=17.22  Aligned_cols=32  Identities=22%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             88989968999999999988982999986898
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFP   51 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~   51 (611)
                      |+|.|=|=.|=-+|.+++..|++|+|-|-.|+
T Consensus       212 vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI  243 (420)
T COG0499         212 VVVAGYGWVGRGIAMRLRGMGARVIVTEVDPI  243 (420)
T ss_pred             EEEECCCCCCHHHHHHHHCCCCEEEEEECCCH
T ss_conf             99963564436699986228986999824817


No 488
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.09  E-value=10  Score=16.78  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=0.0

Q ss_pred             EEEECCC---HHHHHHHHHHHHCCCCEEEE
Q ss_conf             8898996---89999999999889829999
Q gi|254781043|r   20 VVVVGAG---GAGLRATLGMAEKGFKTACI   46 (611)
Q Consensus        20 VlVIG~G---~AGl~AAi~A~e~G~~V~li   46 (611)
                      +||-|++   .=|...|.+.+++|++|++.
T Consensus         9 alVTGas~~~GIG~aiA~~la~~Ga~Vvi~   38 (257)
T PRK12859          9 AVVTGVSRLDGIGAAICKELAEAGYDIFFT   38 (257)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             999288999862999999999879989998


No 489
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=61.97  E-value=8.4  Score=17.29  Aligned_cols=28  Identities=14%  Similarity=0.210  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898996899999999998898299998
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      |||||+|..|..-.+-....=.+++++|
T Consensus        80 VLiiGgGdG~tlRevlkh~~ve~i~~VE  107 (282)
T COG0421          80 VLIIGGGDGGTLREVLKHLPVERITMVE  107 (282)
T ss_pred             EEEECCCCCHHHHHHHHCCCCCEEEEEE
T ss_conf             9998897669999998368843379997


No 490
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=60.99  E-value=10  Score=16.65  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=0.0

Q ss_pred             EEEECCCHHHH--HHHHHHHHCCCCEEEEECCC
Q ss_conf             88989968999--99999998898299998689
Q gi|254781043|r   20 VVVVGAGGAGL--RATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        20 VlVIG~G~AGl--~AAi~A~e~G~~V~lieK~~   50 (611)
                      |+|+|-|..|.  .+|--++++|..|.+.+..+
T Consensus         2 i~i~GlG~tG~G~a~a~~L~~~g~~~~~~D~~~   34 (476)
T TIGR01087         2 ILILGLGKTGRGVAVARFLKKKGAEVTVTDDDP   34 (476)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             789986751078999999997298799998452


No 491
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.98  E-value=10  Score=16.65  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             EEEECCC---HHHHHHHHHHHHCCCCEEEE
Q ss_conf             8898996---89999999999889829999
Q gi|254781043|r   20 VVVVGAG---GAGLRATLGMAEKGFKTACI   46 (611)
Q Consensus        20 VlVIG~G---~AGl~AAi~A~e~G~~V~li   46 (611)
                      +||-|++   .=|...|...+++|++|++.
T Consensus         9 ~lVTGaag~rGIG~aiA~~la~~Ga~Vvi~   38 (256)
T PRK08594          9 YVVMGVANKRSIAWGIARSLHNAGAKLVFT   38 (256)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             999899999639999999999879999997


No 492
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=60.64  E-value=11  Score=16.61  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=0.0

Q ss_pred             EEEECCC-HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8898996-89999999999889829999868
Q gi|254781043|r   20 VVVVGAG-GAGLRATLGMAEKGFKTACITKV   49 (611)
Q Consensus        20 VlVIG~G-~AGl~AAi~A~e~G~~V~lieK~   49 (611)
                      |||-|++ .=|...|.+.+++|++|++..+.
T Consensus         3 VlITGas~GIG~aiA~~la~~Ga~V~i~~r~   33 (259)
T PRK08340          3 VLVTASSRGIGFNVARELLKKGARVVISSRN   33 (259)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9997587789999999999879999999799


No 493
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=60.47  E-value=11  Score=16.60  Aligned_cols=27  Identities=33%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCC-CCEEEE
Q ss_conf             889899689999999999889-829999
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKG-FKTACI   46 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G-~~V~li   46 (611)
                      |||||+|--|.-+|-.+.++| .+|+++
T Consensus       188 ~LliGAGeMg~Lva~~L~~~~v~~~~i~  215 (436)
T TIGR01035       188 VLLIGAGEMGELVAKHLREKGVGKVLIA  215 (436)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8998274579999999964895289885


No 494
>PRK07825 short chain dehydrogenase; Provisional
Probab=60.17  E-value=11  Score=16.56  Aligned_cols=147  Identities=14%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHH--HHHCCCCEEEEECCCCCCCCCHHCCCCE-EEECCCCCCCCHHHHHHHHHHHCCCC-------
Q ss_conf             8898996899999999--9988982999986898852104116534-25137899999999999899845887-------
Q gi|254781043|r   20 VVVVGAGGAGLRATLG--MAEKGFKTACITKVFPTRSHTVAAQGGI-AASLANMTPDSWQWHLYDTIKGSDWL-------   89 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~--A~e~G~~V~lieK~~~~~g~s~~A~GGi-~a~~~~~~~Ds~~~~~~Dt~~~g~~l-------   89 (611)
                      |++|=||..|+-.|+.  .+++|++|++.+.....--.....-+.. ....+-.++++++..++.+.+.-..+       
T Consensus         7 vvlITGassGIG~a~A~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~DVtd~~~v~~~~~~~~~~~G~iDiLVNNA   86 (273)
T PRK07825          7 VIAITGGARGIGLATARALAALGAKVAIGDLDEALAKESAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNA   86 (273)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             89992623399999999999879989999799999999998607855999147999999999999999709977899878


Q ss_pred             -----------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHHH
Q ss_conf             -----------7999999999988999999998699813279985510014641145678765640798666542-6678
Q gi|254781043|r   90 -----------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAIL  157 (611)
Q Consensus        90 -----------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i~  157 (611)
                                 .+++.-+.+--+-.-.+......-=.+.+...|.+...     +...+.-..-....|++-+-+ ..+.
T Consensus        87 Gi~~~~~~~e~~~e~~~~~~~vNl~g~~~~~~~~lp~M~~~~~G~IVni-----sS~ag~~~~p~~~~Y~ASK~av~g~t  161 (273)
T PRK07825         87 GIMPVGPFLDEPDRATRRILDVNVYGVILGSKLAAPRMVPRGRGHIVNV-----ASLAGKIAVPGMATYCASKHAVVGLT  161 (273)
T ss_pred             CCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE-----ECHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             7789987343999999999886039999999999999997399479998-----47676477999835999999999999


Q ss_pred             HHHHHHHHHCCCEE
Q ss_conf             99999987312303
Q gi|254781043|r  158 HTLYGQALKNNAEF  171 (611)
Q Consensus       158 ~~L~~~~~~~gv~i  171 (611)
                      ++|..+....||++
T Consensus       162 ~sLa~El~~~gIrV  175 (273)
T PRK07825        162 DALRLELRPTGVHV  175 (273)
T ss_pred             HHHHHHHCCCCCEE
T ss_conf             99999852309599


No 495
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.93  E-value=11  Score=16.53  Aligned_cols=31  Identities=19%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             EEEEC-CCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             88989-96899999999998898299998689
Q gi|254781043|r   20 VVVVG-AGGAGLRATLGMAEKGFKTACITKVF   50 (611)
Q Consensus        20 VlVIG-~G~AGl~AAi~A~e~G~~V~lieK~~   50 (611)
                      +||.| ++.=|...|..++++|++|++..+..
T Consensus         8 ~lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~   39 (238)
T PRK05786          8 VLIVGVSPGLGYAVAYFALREGASVYAFARSE   39 (238)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             99928987899999999998799999996988


No 496
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=59.90  E-value=11  Score=16.53  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEECEEEECCCHH-HHHHHHHHHHCCCCEEEEEC
Q ss_conf             0534413323105889899689-99999999988982999986
Q gi|254781043|r    7 LKSSYTYVDHSYDVVVVGAGGA-GLRATLGMAEKGFKTACITK   48 (611)
Q Consensus         7 ~~~~~~~~d~~~DVlVIG~G~A-Gl~AAi~A~e~G~~V~lieK   48 (611)
                      |+..+..-.+  =+||-|++.. |...|...+++|++|++++.
T Consensus         2 m~~lf~L~gK--valVTGas~GIG~aia~~la~~Ga~V~i~~~   42 (278)
T PRK08277          2 MNNLFSLKGK--VAVITGGGGVLGGAMAKELARAGAKVAILDR   42 (278)
T ss_pred             CCCCCCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             4006388999--8999586748999999999987998999979


No 497
>PRK02947 hypothetical protein; Provisional
Probab=59.45  E-value=11  Score=16.48  Aligned_cols=29  Identities=28%  Similarity=0.527  Sum_probs=0.0

Q ss_pred             CEEEE----CCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             58898----996899999999998898299998
Q gi|254781043|r   19 DVVVV----GAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus        19 DVlVI----G~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      ||+||    |--.+-.-+|+.|+++|++|+.|+
T Consensus       109 Dvlii~SnSG~N~~pVE~A~~ak~~G~~VIaiT  141 (247)
T PRK02947        109 DVLIIVSNSGRNAVPIEMALEAKERGAKVIAVT  141 (247)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             889999678777689999999998699699996


No 498
>KOG2304 consensus
Probab=59.42  E-value=9.8  Score=16.84  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898996899999999998898299998
Q gi|254781043|r   20 VVVVGAGGAGLRATLGMAEKGFKTACIT   47 (611)
Q Consensus        20 VlVIG~G~AGl~AAi~A~e~G~~V~lie   47 (611)
                      |-|||+|.-|.--|--++..|.+|.|++
T Consensus        14 V~ivGaG~MGSGIAQv~a~sg~~V~l~d   41 (298)
T KOG2304          14 VAIVGAGQMGSGIAQVAATSGLNVWLVD   41 (298)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf             4787566432039999885199469854


No 499
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110   This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=59.33  E-value=11  Score=16.47  Aligned_cols=30  Identities=30%  Similarity=0.470  Sum_probs=0.0

Q ss_pred             EEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf             898996899999999998898-299998689
Q gi|254781043|r   21 VVVGAGGAGLRATLGMAEKGF-KTACITKVF   50 (611)
Q Consensus        21 lVIG~G~AGl~AAi~A~e~G~-~V~lieK~~   50 (611)
                      ||||+|.+.-.|-..+++.|. ++.||.+.+
T Consensus       134 lviGaGGtsrAA~yaL~sLG~~~I~~inR~~  164 (291)
T TIGR01809       134 LVIGAGGTSRAAVYALASLGVKDIYVINRSK  164 (291)
T ss_pred             EEECCCCHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf             8883872148999999866997069973586


No 500
>PRK08628 short chain dehydrogenase; Provisional
Probab=59.28  E-value=11  Score=16.46  Aligned_cols=147  Identities=16%  Similarity=0.145  Sum_probs=0.0

Q ss_pred             EEEE--CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC----
Q ss_conf             8898--99689999999999889829999868988521----0411653425137899999999999899845887----
Q gi|254781043|r   20 VVVV--GAGGAGLRATLGMAEKGFKTACITKVFPTRSH----TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWL----   89 (611)
Q Consensus        20 VlVI--G~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~----s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l----   89 (611)
                      |+||  |++.=|...|...+++|++|++++........    .......+....+-.++++++..++.+++.-..+    
T Consensus         9 valVTG~s~GIG~a~a~~la~~Ga~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~v~~~~~~~g~iDiLV   88 (258)
T PRK08628          9 VVIVTGGASGIGAAISLRLAEEGAIPVVFGRSAPDDEFAEELRALQPRAEFVQVDLQDDAQCRDAVAQTVAKFGRIDGLV   88 (258)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             89992777789999999999879989998088023999999995399789999527999999999999999829988999


Q ss_pred             ------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCC-HHH
Q ss_conf             ------------7999999999988999999998699813279985510014641145678765640798666542-667
Q gi|254781043|r   90 ------------GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTG-HAI  156 (611)
Q Consensus        90 ------------~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG-~~i  156 (611)
                                  ...+-.....+--....-+|.+.-+|+-+...|.+...     +.............|+..+.| ..+
T Consensus        89 nnAGi~~~~~~e~~~e~~~~~~~~Nl~~~~~l~~~~~p~l~~~~GsIIni-----sS~~a~~~~~~~~~Y~asKaal~~l  163 (258)
T PRK08628         89 NNAGVNDGVGLDAGRDAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNI-----SSKTALTGQGGTSGYAAAKGAQLGL  163 (258)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-----ECHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             88822788777899999999999874999999999999888549549998-----1221016799848899999999999


Q ss_pred             HHHHHHHHHHCCCEE
Q ss_conf             899999987312303
Q gi|254781043|r  157 LHTLYGQALKNNAEF  171 (611)
Q Consensus       157 ~~~L~~~~~~~gv~i  171 (611)
                      .+.|..+..+.||++
T Consensus       164 tr~lA~e~~~~gIRv  178 (258)
T PRK08628        164 TREWAVALAKDGVRV  178 (258)
T ss_pred             HHHHHHHHCCCCEEE
T ss_conf             999999964119599


Done!