HHsearch alignment for GI: 254781043 and conserved domain: pfam06039
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.46 E-value=2.8e-06 Score=59.67 Aligned_cols=195 Identities=22% Similarity=0.200 Sum_probs=100.5
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCCC--C-CH--HH----
Q ss_conf 2310588989968999999999988--9829999868988---52104-116534251--378999--9-99--99----
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMTP--D-SW--QW---- 77 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~~--D-s~--~~---- 77 (611)
T Consensus 2 ~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~I 81 (489)
T pfam06039 2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKI 81 (489)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 96102999996288999999999759987489998147525550788665521000213414887656884427999999
Q ss_pred ---------HHHHHHHHCCCCCCHHHH-H-----------HHHHHHHHHHHHHHH----CCCCCCCCCCCCEEEECCCCC
Q ss_conf ---------999899845887799999-9-----------999988999999998----699813279985510014641
Q gi|254781043|r 78 ---------HLYDTIKGSDWLGDVDAI-Q-----------YLAMEAPQSVYELEH----YGVPFSRNEAGKIYQRPFGGH 132 (611)
Q Consensus 78 ---------~~~Dt~~~g~~l~d~~lv-~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~~~~gg~ 132 (611)
T Consensus 82 neqFe~Srqfws~lv~~g-~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~-~i~~w-~P-- 156 (489)
T pfam06039 82 NEQFQISRQFWAYLVKEG-VLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPE-KIKEW-VP-- 156 (489)
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHH-HHHHH-CC--
T ss_conf 999999999999998758-98985785056881589877698899999999850587867778447989-99864-48--
Q ss_pred CCCCCCCCCCC-EEEE--ECCCC---CHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEEC
Q ss_conf 14567876564-0798--66654---26678999999873-123031131565200013443012468980587089950
Q gi|254781043|r 133 MQNYGEGPPVQ-RTCA--AADRT---GHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFS 205 (611)
Q Consensus 133 ~~~~~~g~~~~-R~~~--~~d~t---G~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~ 205 (611)
T Consensus 157 --Lv~~gR~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~-v~v~~~~~~~~~~~~ 233 (489)
T pfam06039 157 --LMMEGRDPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWT-VTVKDLNTGDKRTIK 233 (489)
T ss_pred --CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEE-EEEEECCCCCEEEEE
T ss_conf --00379797885579944887401189999999999851898289927885345888999879-999865789748998
Q ss_pred CCCEEEECCCCC
Q ss_conf 672474157656
Q gi|254781043|r 206 AKLVVLATGGYG 217 (611)
Q Consensus 206 AkaVILATGG~~ 217 (611)
T Consensus 234 A~fVfvgAGG~s 245 (489)
T pfam06039 234 AKFVFIGAGGGA 245 (489)
T ss_pred ECEEEECCCHHH
T ss_conf 267998887577