RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62] (611 letters) >gnl|CDD|181641 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 598 Score = 1249 bits (3235), Expect = 0.0 Identities = 451/603 (74%), Positives = 498/603 (82%), Gaps = 8/603 (1%) Query: 9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA 68 S+Y +DH YDVVVVGAGGAGLRATLGMAE G KTACITKVFPTRSHTVAAQGGI+ASL Sbjct: 4 SAYKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLG 63 Query: 69 NMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRP 128 NM D W+WH+YDT+KGSDWLGD DAI+Y+ EAP +VYELEHYGVPFSR E GKIYQRP Sbjct: 64 NMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRP 123 Query: 129 FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC 188 FGG NYG+GPP QRTCAAADRTGHAILHTLY Q+LK+NAEFFIEYFALDLI++ G C Sbjct: 124 FGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVC 183 Query: 189 VGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME 248 GVVAW L+ G +HRF A +VVLATGGYGRAYFSATSAHTCTGDG GMV RAGLPLQDME Sbjct: 184 RGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDME 243 Query: 249 FVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEI 308 FVQFHPTGIYGAGCLITEGARGEGGYL NS+GERFMERYAPSAKDLASRDVVSR M +EI Sbjct: 244 FVQFHPTGIYGAGCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEI 303 Query: 309 REGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMG 368 REGRGVGK KDHI L+L+HLDP VL ERLPGISESA+IFAGVDVT++PIPV+PTVHYNMG Sbjct: 304 REGRGVGKKKDHIFLHLDHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMG 363 Query: 369 GIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIR 428 GIPTNY GEVL NP+ PGLMA+GEA C SVHGANRLGSNSLIDLVVFGRAA +R Sbjct: 364 GIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALR 423 Query: 429 ASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQD 488 A+E+I +P P L +CD+ +DRFDRLRHA+G PTA LR KMQR MQ DA VFRT + Sbjct: 424 AAEVIKPGAPHPPLPKDACDKALDRFDRLRHANGGTPTAELRLKMQRTMQEDAAVFRTGE 483 Query: 489 SLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG 548 L +G +S +W + D+KV DRSLIWNSDLVETLEL NLM A+ T+ SAE RKESRG Sbjct: 484 VLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRG 543 Query: 549 SHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKA 608 +HAREDF D RDD NW KH+L WVD + GK+KLDYRPVH L V Y I PK Sbjct: 544 AHAREDFPD-----RDDENWMKHTLAWVD-DKGKVKLDYRPVHLYTLTDDVQY--IPPKK 595 Query: 609 RVY 611 RVY Sbjct: 596 RVY 598 >gnl|CDD|185473 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional. Length = 617 Score = 996 bits (2578), Expect = 0.0 Identities = 380/609 (62%), Positives = 465/609 (76%), Gaps = 8/609 (1%) Query: 4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI 63 S +L S+Y +DH+YD VVVGAGGAGLRA LG+ E G+KTACI+K+FPTRSHTVAAQGGI Sbjct: 16 SGHLSSAYPVIDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGI 75 Query: 64 AASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGK 123 A+L NMT D W+WH YDT+KGSDWLGD DAIQY+ EAPQ+V ELE YG+PFSR + GK Sbjct: 76 NAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQYMCREAPQAVLELESYGLPFSRTKDGK 135 Query: 124 IYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIIN 183 IYQR FGG +G+G R AAADRTGHA+LHTLYGQ+LK + FFIEYFALDLI++ Sbjct: 136 IYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMD 195 Query: 184 SEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLP 243 +G C GV+A +E G IHRF A V+ATGGYGRAYFS TSAHTCTGDG MV+RAGLP Sbjct: 196 EDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLP 255 Query: 244 LQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRC 303 LQD+EFVQFHPTGIYGAGCLITEG RGEGG L NS+GERFMERYAP+AKDLASRDVVSR Sbjct: 256 LQDLEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRA 315 Query: 304 MMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363 M +EI EGRG G +KDHI+L L HL P L ERLPGISE+A+IFAGVDVT++PIPV+PTV Sbjct: 316 MTIEILEGRGCGPNKDHIYLDLTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTV 375 Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423 HYNMGGIPTN+ +VL + + ++ PGL+A GEA CASVHGANRLG+NSL+D+VVFGR Sbjct: 376 HYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGR 435 Query: 424 AAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGV 483 AA E++ P P L + + + R D++RH G + TA +R++MQR MQ A V Sbjct: 436 AAANTVMEILKPGRPQPDLPKDAGEASIARLDKIRHNKGDISTAQIRKRMQRTMQKHAAV 495 Query: 484 FRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEAR 543 FR +SL +G + ++ + D+K+ D+SL+WN+DL+ETLEL+NL+ A T+ SAEAR Sbjct: 496 FRIGESLQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEAR 555 Query: 544 KESRGSHAREDFKDGEFGGRDDVNWRKHSLCWV-DWNTGKIKLDYRPVHTELLCGGVDYS 602 KESRG+HAR+DF + RDD NW KH+L ++ D GK++L YRPV T L ++ Sbjct: 556 KESRGAHARDDFPE-----RDDKNWMKHTLSYIRDVKKGKVRLTYRPVITTPLDNEMET- 609 Query: 603 KIAPKARVY 611 + P RVY Sbjct: 610 -VPPAKRVY 617 >gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone] flavoprotein subunit. Length = 635 Score = 963 bits (2490), Expect = 0.0 Identities = 404/604 (66%), Positives = 481/604 (79%), Gaps = 9/604 (1%) Query: 8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL 67 +SSYT VDH+YD VVVGAGGAGLRA +G++E GF TACITK+FPTRSHTVAAQGGI A+L Sbjct: 41 RSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAAL 100 Query: 68 ANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQR 127 NMT D W+WH+YDT+KGSDWLGD DAIQY+ EAP++V ELE+YG+PFSR E GKIYQR Sbjct: 101 GNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQR 160 Query: 128 PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGC 187 FGG ++G+G R AADRTGHA+LHTLYGQA+K+N +FF+EYFALDLI++S+G Sbjct: 161 AFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGA 220 Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDM 247 C GV+A +E G +HRF A +LATGGYGRAYFSATSAHTCTGDG MVARAGLPLQD+ Sbjct: 221 CQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDL 280 Query: 248 EFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMME 307 EFVQFHPTGIYGAGCLITEG+RGEGG L NS+GERFMERYAP+AKDLASRDVVSR M ME Sbjct: 281 EFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTME 340 Query: 308 IREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNM 367 IREGRGVG KDHI+L+LNHL P VL+ERLPGISE+A IFAGVDVT++PIPV+PTVHYNM Sbjct: 341 IREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNM 400 Query: 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVI 427 GGIPTNY GEV+ +P+ PGLMA GEA CASVHGANRLG+NSL+D+VVFGRA Sbjct: 401 GGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 460 Query: 428 RASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQ 487 R +E+ L + ++ + D+LR+A+G +PT+ +R MQR MQ +A VFRTQ Sbjct: 461 RVAEIAKPGEKQKPLPKDAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQ 520 Query: 488 DSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESR 547 ++L +GC+ + WD D+KV DRSLIWNSDL+ETLEL+NL+INA T++SAEARKESR Sbjct: 521 ETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEARKESR 580 Query: 548 GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPK 607 G+HAREDF RDD NW KH+L + W GK++LDYRPVH L V+ PK Sbjct: 581 GAHAREDFTK-----RDDENWMKHTLGY--WEEGKVRLDYRPVHMNTLDDEVET--FPPK 631 Query: 608 ARVY 611 ARVY Sbjct: 632 ARVY 635 >gnl|CDD|130875 TIGR01816, sdhA_forward, succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase. Length = 565 Score = 879 bits (2274), Expect = 0.0 Identities = 365/576 (63%), Positives = 443/576 (76%), Gaps = 11/576 (1%) Query: 36 MAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95 +A+ G TAC+TK+FPTRSHTVAAQGGI+A+L NM D+W+WH+YDT+KGSDWLGD DAI Sbjct: 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAI 60 Query: 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHA 155 +Y+ +AP++V ELEH G+PFSR E GKIYQRPFGGH +++G+G +R CAAADRTGHA Sbjct: 61 EYMCKQAPEAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHA 120 Query: 156 ILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 ILHTLY Q LK + FF EYFALDL++ +G C GV+A+ LETGEIHRF AK VVLATGG Sbjct: 121 ILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGG 179 Query: 216 YGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYL 275 YGR YFS T+AHT TGDG GMV RAGLPLQDMEFVQFHPTGI GAGCLITEG RGEGG L Sbjct: 180 YGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGCLITEGCRGEGGIL 239 Query: 276 VNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQE 335 +N+ GERFMERYAP+AKDLASRDVVSR M +EIREGRGVG +KDH++L L+HL P VL+ Sbjct: 240 INANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEG 299 Query: 336 RLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMA 395 RLPGISE+AR FAGVD +DPIPV+PTVHYNMGGIPTNY G+VL + ++ PGL A Sbjct: 300 RLPGISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVL-RDGNGNDQIVPGLYA 358 Query: 396 IGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFD 455 GEA C SVHGANRLG+NSL+DLVVFGRAA + A+E S + + ++ + + R D Sbjct: 359 AGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGSDVKPMPPNAGEESVMRLD 418 Query: 456 RLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLI 515 +LR A G AALR ++QR+MQ AGVFRT + L G +S L + ++K++D+S + Sbjct: 419 KLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKISALKERYKNVKINDKSKV 478 Query: 516 WNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCW 575 WN+DLVE LELQNL+ A AT SAEARKESRG+HAREDF + RDD NW KH+L + Sbjct: 479 WNTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPE-----RDDENWLKHTLSY 533 Query: 576 VDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 VD NTGK+ L Y+PV + + + PK RVY Sbjct: 534 VDINTGKVLLSYKPVIFK----PLTVADFEPKKRVY 565 >gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. Length = 566 Score = 786 bits (2031), Expect = 0.0 Identities = 314/596 (52%), Positives = 398/596 (66%), Gaps = 33/596 (5%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DSWQW 77 DVV+VGAG AGLRA + A+ G TA I+KV+PTRSHTVAAQGG+AA+L N+ P DSW+W Sbjct: 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEW 60 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 H YDT+KGSD+L D DA++Y+ EAP+++ ELEH+GVPFSR G+I QRPFGGH ++ Sbjct: 61 HAYDTVKGSDYLADQDAVEYMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKD-- 118 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197 RTC AAD+TGHA+LHTLY Q LK FF EYFALDLI + +G GVVA+ L+ Sbjct: 119 ------RTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLK 171 Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257 TGEI F AK VVLATGGYGR Y + T+AH TGDG M RAG+PL+DMEFVQFHPTG+ Sbjct: 172 TGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGL 231 Query: 258 YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317 Y +G LITEG RGEGGYLVN GERFMERYAP +LA RDVVSR M EIREGRGVG Sbjct: 232 YPSGILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSP 291 Query: 318 -KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWG 376 D+++L L HL ++ERLP I E A+ FAGVD ++PIPV PT HY+MGGIPT+Y G Sbjct: 292 PGDYVYLDLRHLGEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTG 351 Query: 377 EVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436 V E GL A GE C SVHGANRLG NSL++LVVFGR A A+E K+ Sbjct: 352 RV------ICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKT 405 Query: 437 -SPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCR 495 +P ++ + D L ++G A +RE++ M + G+FRT++ L Sbjct: 406 GNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKAVD 465 Query: 496 NLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF 555 + L + +++++D+S ++N+DL+E LEL N++ A A RKESRG+HARED+ Sbjct: 466 EIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDY 525 Query: 556 KDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 + RDD NW KH+L + D N G +L+Y+P V +K P R Y Sbjct: 526 PE-----RDDENWLKHTLAYYD-NPGTPRLEYKP---------VTITKYEPAERKY 566 >gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 583 Score = 749 bits (1935), Expect = 0.0 Identities = 293/601 (48%), Positives = 395/601 (65%), Gaps = 26/601 (4%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75 H YDVV+VGAGGAG+RA + A +TA +TK++PTRSHT AAQGG+ A+LAN+ D+W Sbjct: 4 HRYDVVIVGAGGAGMRAAI-EAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNW 62 Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQN 135 +WH +DT+KG D+L D DA + +A EA +V +LE G+PF+R GKI QR FGGH ++ Sbjct: 63 EWHTFDTVKGGDYLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRD 122 Query: 136 YGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSE---GCCVGVV 192 +G+ P V+R C AADRTGH IL TLY +K+ EFF E++ LDL++ GVV Sbjct: 123 HGKAP-VRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVV 181 Query: 193 AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 A++L TGEIH F AK VV ATGG GR Y + ++AHT TGDG G+V R GLPL+DMEF QF Sbjct: 182 AYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQF 241 Query: 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGR 312 HPTG+ G G LI+E ARGEGG L N++GERFMERYAP+ KDLA RD+V+R M++E+REGR Sbjct: 242 HPTGLAGLGILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGR 301 Query: 313 GVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPT 372 G G +KD+++L L HL VL+ +LP I+E AR + GVD ++P+PV PT HY MGGIPT Sbjct: 302 GAGPNKDYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPT 361 Query: 373 NYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM 432 GEVL N PGL A GE C SVHGANRLG+NSL+D+ VFGR A I A+E Sbjct: 362 TVDGEVLRDN----TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEY 417 Query: 433 IDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSD 492 + + L + +++ + L G+ A +R ++Q++M +A VFRT+++L Sbjct: 418 ARGADFVD-LPENPEAMVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQ 476 Query: 493 GCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAR 552 ++ L + + V D+ +N+DL+E +EL L+ A TV A RKESRG HAR Sbjct: 477 ALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAR 536 Query: 553 EDFKDGEFGGRDDVNWRKHSLCWVDW--NTGKIKLDYRPVHTELLCGGVDYSKIAPKARV 610 ED+ + RDDVN+ KH++ + + I+LDY+PV ++ P R Sbjct: 537 EDYPN-----RDDVNYMKHTMAYKEGTDLLSDIRLDYKPVVQ---------TRYEPMERK 582 Query: 611 Y 611 Y Sbjct: 583 Y 583 >gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 591 Score = 703 bits (1816), Expect = 0.0 Identities = 314/597 (52%), Positives = 406/597 (68%), Gaps = 21/597 (3%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW 77 +DVV+VGAGG+G+RA+L +A G A ++KVFPTRSHTVAAQGGI ASL NM+ D+W + Sbjct: 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHY 72 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 H YDTIKGSDWLGD DAI+++ EAP VYELEH+G+PF RN G IYQRPFGGH NYG Sbjct: 73 HFYDTIKGSDWLGDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG 132 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197 E PVQR CAAADRTGHA+LHTLY Q + +FF+E+ ALDLI +++G +GV A ++E Sbjct: 133 E-KPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEME 191 Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257 TG+++ AK + ATGG GR + ++T+A TGDG GM ARAG+PLQDMEF QFHPTG+ Sbjct: 192 TGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHPTGV 251 Query: 258 YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317 GAG LITEG RGEGG L N GERFMERYAP+ KDLA RD VSR M EI+EGRG G + Sbjct: 252 AGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPN 311 Query: 318 KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGE 377 DH+ L L HL + +RLP I E A FA VD ++PIPV+PT+HY MGGIPTN G+ Sbjct: 312 GDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQ 371 Query: 378 VLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA---VIRASEMID 434 V+ S++ + G AIGE C SVHGANRLG+NSL+DLVVFGRAA ++ + Sbjct: 372 VVG-TSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQH 430 Query: 435 KSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGC 494 + P+P+ + D + R +L + + ++ MQ AGVFRTQ L +G Sbjct: 431 EHKPLPA---DAADFSLARLAKLDKSTSGEYAQDVANDIRATMQKHAGVFRTQALLDEGV 487 Query: 495 RNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARED 554 + L + + ++ + D+S ++N+ VE LE+ NL+ A AT+ SA ARKESRG+HA D Sbjct: 488 EQILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSD 547 Query: 555 FKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 ++ RDD NW KH+L W + +LDY+PV + L V+ + PKAR + Sbjct: 548 YEH-----RDDENWLKHTL----WYSEGNRLDYKPVQMKPLT--VES--VPPKARTF 591 >gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 588 Score = 700 bits (1808), Expect = 0.0 Identities = 304/602 (50%), Positives = 385/602 (63%), Gaps = 25/602 (4%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75 +D VV+GAGGAG+RA L +++ G A ++KVFPTRSHTV+AQGGI +L N D+W Sbjct: 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNW 65 Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQN 135 +WH+YDT+KGSD++GD DAI+Y+ P+++ ELEH G+PFSR + G+IYQRPFGG +N Sbjct: 66 EWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKN 125 Query: 136 YGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQ 195 +G G RT AAADRTGHA+LHTLY Q LKN+ F E++ALDL+ N +G VG A Sbjct: 126 FG-GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAIC 184 Query: 196 LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255 +ETGE+ F A+ VLATGG GR Y S T+AH TGDG GM RAG+P+QDME QFHPT Sbjct: 185 IETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPT 244 Query: 256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV- 314 GI GAG L+TEG RGEGGYL+N GERFMERYAP+AKDLA RDVV+R +M+EIREGRG Sbjct: 245 GIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304 Query: 315 GKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNY 374 G H L L+HL VL+ RLPGI E +R FA VD ++PIPVIPT HY MGGIPT Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKV 364 Query: 375 WGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434 G+ L N K + PGL A+GE C SVHGANRLG NSL+DLVVFGRAA + E + Sbjct: 365 TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424 Query: 435 KSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGC 494 + + S + + R +R + +R+ +Q MQ + VFR D+++ G Sbjct: 425 EQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKALQECMQNNFSVFREGDAMAKGL 484 Query: 495 RNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARED 554 L + + + + ++ D S +N+ +E LEL NLM A AT SA R ESRG+H+R D Sbjct: 485 EELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFD 544 Query: 555 FKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKI-----APKAR 609 F D RDD NW HSL Y P + V+ PK R Sbjct: 545 FPD-----RDDENWLCHSL-------------YLPETESMTRRSVNMEPKLRPAFPPKIR 586 Query: 610 VY 611 Y Sbjct: 587 TY 588 >gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 570 Score = 698 bits (1802), Expect = 0.0 Identities = 300/584 (51%), Positives = 389/584 (66%), Gaps = 16/584 (2%) Query: 30 LRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DSWQWHLYDTIKGSDW 88 +RA L +A+ G KTA +TKVFPTRSHTV+AQGGI ++A+ P D W+WH+YDT+KGSD+ Sbjct: 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDY 60 Query: 89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA 148 +GD DAI+Y+ P++V+ELEH G+PFSR E G+IYQRPFGG +++G+G RTCAA Sbjct: 61 IGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAA 120 Query: 149 ADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKL 208 ADRTGHA+LHTLY LKN F E++A+DL+ N +G VGV+A +ETGE +K Sbjct: 121 ADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKA 180 Query: 209 VVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGA 268 VLATGG GR Y S T+A TGDG GM RAG+P+QD+E QFHPTGI GAG L+TEG Sbjct: 181 TVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240 Query: 269 RGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHL 328 RGEGGYL+N GERFMERYAP+AKDLA RDVV+R M+ EI G G G +KDH+ L L+HL Sbjct: 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHL 300 Query: 329 DPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPER 388 VL RLPGI E ++ FA VD PIPV+PT HY MGG+ TN G+ + ++ ++ Sbjct: 301 GEEVLHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQ 360 Query: 389 FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCD 448 PGL A+GE C SVHGANRLG NSL+DLVVFGRAA + + + + S D Sbjct: 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGIEYRDASESDID 420 Query: 449 RIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLK 508 + R ++L G AALR ++Q MQ GVFRT + + G L+ L + +A++K Sbjct: 421 AALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480 Query: 509 VHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNW 568 ++D+S +N+ +E LELQNL+ A AT +AE RKESRG+HAREDF+D RDD NW Sbjct: 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFED-----RDDENW 535 Query: 569 RKHSLCW-VDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 H+L + + GK +++ P PK R Y Sbjct: 536 LCHTLYFPGEKRVGKRAVNFAPKTVP---------AFEPKVRTY 570 >gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 577 Score = 577 bits (1489), Expect = e-165 Identities = 258/581 (44%), Positives = 348/581 (59%), Gaps = 27/581 (4%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLANMTPD 73 YDVV+VG+G AGLRA + AE+ A ++K P RSH+V+A+GG AA L D Sbjct: 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGD 64 Query: 74 SWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHM 133 S+ H YDT+KGSD+L D DA++ EAP+ + L+H+GVP+SR G+I QRPFGG Sbjct: 65 SFDLHAYDTVKGSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGM- 123 Query: 134 QNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVV 192 RT AAD+TG I+HTLY +AL+ +N F+ E+F LI+ G GV Sbjct: 124 -------SFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVT 175 Query: 193 AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 A L+ GE F AK ++ATGG GR Y T AH+ TGDG + RAG+PL+DMEFVQF Sbjct: 176 AIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQF 235 Query: 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGR 312 HPTG+ +G LITE ARGEGGYL+N +GERFM+RYAP +LA RDVVSR +M EI EGR Sbjct: 236 HPTGLVPSGILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGR 295 Query: 313 GVGKSKD--HIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGI 370 G ++ L L HL + ERLP I E A+ +AG+D +PIPV P HY MGGI Sbjct: 296 GFKHESGLCYVGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGI 355 Query: 371 PTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS 430 T+ +G VL A+ + + GL A GEA SVHGANRLGSNS + +V+GR A +A+ Sbjct: 356 HTDVYGRVLTADGE----WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAA 411 Query: 431 EMIDKSSPIPSLDISSCDRIMDR-FDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDS 489 E K S ++ R FD+L +G P+ +R ++ M + G+FR + Sbjct: 412 EYALKRPAPSSPVEKLAEKEEKRIFDKLLKKEGGEPSYEIRRELNDIMDKNFGIFRDESG 471 Query: 490 LSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS 549 L++ + + L + ++++ D+S I+N+DL + LEL ++ A A R ESRG+ Sbjct: 472 LAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGA 531 Query: 550 HAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV 590 H R D+ RDD NW KH+L + G K+ Y PV Sbjct: 532 HYRLDYPK-----RDDENWLKHTLAYYT--GGGPKVTYTPV 565 >gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 575 Score = 561 bits (1447), Expect = e-160 Identities = 252/605 (41%), Positives = 341/605 (56%), Gaps = 44/605 (7%) Query: 18 YDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTP-DS 74 +DVV+VG G AG RA L + A + K P RSH+VAAQGGIAASL N+ P DS Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDS 63 Query: 75 WQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQ 134 W+ H +DT+KGSD+L D DA+ L EAP + +LEH GV FSR G+I QR FGGH Sbjct: 64 WEAHAFDTVKGSDYLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSH 123 Query: 135 NYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAW 194 N RTC AAD+TGHAILH L + + E++ + LI+ + GVV + Sbjct: 124 N--------RTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMY 174 Query: 195 QLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254 + G + AK V+ ATGGYGR + + ++ + TGDG M A AGLPL+DMEFVQFHP Sbjct: 175 HIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHP 234 Query: 255 TGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV 314 TG+Y G LI+E RGEG YL+NS+G+RFM YAPS +LA RD+ SR + +EIR GRG+ Sbjct: 235 TGLYPVGVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGI 294 Query: 315 G----KSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGI 370 ++L L H+ + R+P E A GVD +P+PV PTVHY MGGI Sbjct: 295 NPDGSAGGPFVYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGI 354 Query: 371 PTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR---AAVI 427 P N G V ++ + G A GE C SVHGANRLGSNSL++ VV+GR AA+ Sbjct: 355 PVNTDGRVR----RSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIA 410 Query: 428 RASEMIDKSSPIPSLDISS-CDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT 486 + +P +D R L G LR++ Q M GVFRT Sbjct: 411 EYVQ----GRKLPEVDEQRYLKEAKQRIQALLDQSGTYRINQLRQQFQDCMTDHCGVFRT 466 Query: 487 QDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKES 546 ++ + +G + L + + + D+ WN++L+E LEL++LM+ + SA R+ES Sbjct: 467 EEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQES 526 Query: 547 RGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAP 606 RG+H+RED+ RDD N+ KH+L + ++ I + Y P V + P Sbjct: 527 RGAHSREDYPQ-----RDDQNFLKHTLAY--YSPAGIDIQYMP---------VVITMFEP 570 Query: 607 KARVY 611 + R Y Sbjct: 571 QERKY 575 >gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated. Length = 582 Score = 484 bits (1248), Expect = e-137 Identities = 243/610 (39%), Positives = 346/610 (56%), Gaps = 52/610 (8%) Query: 19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ 76 D+ ++GAGGAGLRA + AE K A I+KV+P RSHTVAA+GG AA + DS+ Sbjct: 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQD--HDSFD 63 Query: 77 WHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNY 136 +H +DT+ G DWL + D ++Y P + +LE +G P+SR G + R FGG M+ Sbjct: 64 YHFHDTVAGGDWLCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG-MK-- 120 Query: 137 GEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQ 195 ++RT AAD+TG +LHTL+ +LK + F E+F LD++++ +G G+VA Sbjct: 121 -----IERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMN 174 Query: 196 LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255 + G + + A VV+ATGG GR Y T+ TGDG GM R G+PL+DMEFVQ+HPT Sbjct: 175 MMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPT 234 Query: 256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYA---------PSAK--DLASRDVVSRCM 304 G+ G+G L+TEG RGEGG LVN G R+++ Y P K +L RD VS+ Sbjct: 235 GLPGSGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAF 294 Query: 305 MMEIREGRGVGKSK-DHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363 E R+G + + D ++L L HL L ERLP I E A+ + GVD ++PIPV PT Sbjct: 295 WHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTA 354 Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423 HY MGGI T+ +N E GL A+GE +HGANRLGSNSL +LVVFGR Sbjct: 355 HYTMGGIETD----------QNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGR 404 Query: 424 AAVIRASEMIDKSSPIPS--LDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA 481 A +A+E + P LD + D + R L + +G A +R++M +M+ Sbjct: 405 VAGEQAAERAATAGPGNEAALDAQAAD-VEQRLKALVNQEGGENWAKIRDEMGLSMEEGC 463 Query: 482 GVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAE 541 G++RT + + L+ L + +++ D S ++N+DL+ T+EL + A +SA Sbjct: 464 GIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSAL 523 Query: 542 ARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDY 601 ARKESRG+H R D RDDVN+ KH+L + + + G +++Y V Sbjct: 524 ARKESRGAHQR---LDEGCTERDDVNFLKHTLAFYNAD-GTPRIEYSDVKI--------- 570 Query: 602 SKIAPKARVY 611 +K P RVY Sbjct: 571 TKSPPAKRVY 580 >gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 566 Score = 464 bits (1195), Expect = e-131 Identities = 243/598 (40%), Positives = 351/598 (58%), Gaps = 39/598 (6%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL-ANMTP-DS 74 YD VV+G G AGL + +A GFK A I+KVFPTRSH+ AA+GGIAA + N P D+ Sbjct: 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDN 64 Query: 75 WQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQ 134 + YDT+KG D+L D DA + L+ ++ + V LE +G F+R G++ R FGG Q Sbjct: 65 PDYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGG--Q 122 Query: 135 NYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAW 194 Y RT D+TG A+LHTL+ + N +F+ E+F+LDL+ + VG+VA Sbjct: 123 TY------PRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAM 175 Query: 195 QLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254 Q++T F K VVLATGG G Y T+++ TGDG G+ RAG L+D EFVQFHP Sbjct: 176 QMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHP 235 Query: 255 TGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV 314 T +Y + LI+E ARGEGG L N KGERFM +YAP DLA RD+VSR ++ EIREGRG Sbjct: 236 TALYPSDVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGF 295 Query: 315 GKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNY 374 ++ L L HL ++ERL E+A+ FAGVD +PIPV P HY MGGI Sbjct: 296 --PGGYVGLDLTHLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGID--- 350 Query: 375 WGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434 +D + +NP+ GL + GEA C SVHGANRLGSNSL+D +VFG+ + + Sbjct: 351 ----VDIDGRNPD--IVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 Query: 435 KSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDG 493 + P+ + ++++D + ++ V + EK++ M G++R + L + Sbjct: 405 SNPGNPTSNYEKEAEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLLNA 464 Query: 494 CRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARE 553 ++ L ++++ V D+S ++N++ LEL+N++ A+ SA RKESRG+H R Sbjct: 465 MSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRT 524 Query: 554 DFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 D+ D RDD NW KH++ ++ NT +++ ++PV ++ P+ RVY Sbjct: 525 DYPD-----RDDNNWLKHTIAYLRGNT--VEVTFKPVKI---------TRWKPEPRVY 566 >gnl|CDD|162238 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. Length = 580 Score = 447 bits (1150), Expect = e-126 Identities = 241/609 (39%), Positives = 333/609 (54%), Gaps = 50/609 (8%) Query: 19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ 76 D+ V+GAGGAGLRA + AE A I+KV+P RSHTVAA+GG AA + DS Sbjct: 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGD--DDSLD 62 Query: 77 WHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNY 136 H +DT+ G DWL + D ++Y EAP+ + +LEH+G P+SR G++ R FGG M+ Sbjct: 63 EHFHDTVSGGDWLCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGG-MK-- 119 Query: 137 GEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQ 195 +RT AAD+TG +LHTL+ +L + E+F DL+++ +G G+VA + Sbjct: 120 -----KERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIE 173 Query: 196 LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255 + G + A VVLATGG GR Y T+ TGDG M R G+PL+DMEFVQ+HPT Sbjct: 174 MAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPT 233 Query: 256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYA---------PSAK--DLASRDVVSRCM 304 G+ G G L+TEG RGEGG LVN G R+++ Y P K +L RD VS+ Sbjct: 234 GLPGTGILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAF 293 Query: 305 MMEIREGRGVGKSK-DHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363 E +G + D ++L L HL +L ERLP I E A+ + VD ++PIPV PTV Sbjct: 294 WHEHNKGNTIDTPYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTV 353 Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423 HY MGGI T+ N E GL A+GE +HGANRLGSNSL +LVVFGR Sbjct: 354 HYTMGGIETD----------INCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGR 403 Query: 424 AAVIRASEMIDKSSPIPSLDISSCDR-IMDRFDRLRHADGHVPTAALREKMQRAMQLDAG 482 A A+E + I + R + R +RL G A +R +M M+ G Sbjct: 404 RAGEAAAERAARHQKSNESAIRAQARTVELRLERLLSQHGGENWADIRAEMGATMESGCG 463 Query: 483 VFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEA 542 ++R + L+ L + + D S ++N+DL+ +EL + A A V+SA Sbjct: 464 IYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALR 523 Query: 543 RKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYS 602 RKESRG+H R D E RDDV++ KH+L + + + G +++ Y PV + Sbjct: 524 RKESRGAHQRLDEGCTE---RDDVHFLKHTLAFRE-SDGTLRVGYSPVKI---------T 570 Query: 603 KIAPKARVY 611 + P RVY Sbjct: 571 RWPPGERVY 579 >gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit; Provisional. Length = 657 Score = 406 bits (1045), Expect = e-113 Identities = 220/614 (35%), Positives = 304/614 (49%), Gaps = 72/614 (11%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP--- 72 D +V+GAG AGLR + A++G T ++ V RSH+ AAQGG+ ASL N Sbjct: 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEG 63 Query: 73 DSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGK--------- 123 D+ H DT+KGSDW D + + AP++V EL +GVP++R AG Sbjct: 64 DNEDVHFADTVKGSDWGCDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEK 123 Query: 124 ------------IYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF 171 I R FGG + RTC AD TGH +L+ + +A+K Sbjct: 124 VTITEKEEAHGLINARDFGGTKK--------WRTCYTADGTGHTMLYAVDNEAIKLGVPV 175 Query: 172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTG 231 A+ LI + + C G V L TGE+ + AK ++ATGGYGR Y T+A C G Sbjct: 176 HDRKEAIALIHDGKRC-YGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEG 234 Query: 232 DGAGMVARAGL-PLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPS 290 GA + G+ PL +ME VQFHPT I +G L+TEG RG+GG L + G RFM Y P Sbjct: 235 IGAAIALETGVAPLGNMEAVQFHPTAIVPSGILVTEGCRGDGGLLRDKDGYRFMPDYEPE 294 Query: 291 AKDLASRDVVSRCMMMEIREGRGVGKSK--DHIHLYLNHLDPAVLQERLPGISESARIFA 348 K+LASRDVVSR M IR+G+GV KS H+ L + L ++ L + E F Sbjct: 295 KKELASRDVVSRRMTEHIRKGKGV-KSPYGPHLWLDIRILGRKHIETNLREVQEICENFL 353 Query: 349 GVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAP---GLMAIGEAGCASVH 405 G+D +D IPV PT HY+MGGI TN GE + GL + GEA C +H Sbjct: 354 GIDPAKDWIPVRPTQHYSMGGIRTNPTGE------------SYGLKGLFSAGEAACWDMH 401 Query: 406 GANRLGSNSLIDLVVFGRAAVIRASEMID--KSSPIPSLDISS------CDRIMDRFDRL 457 G NRLG NSL + VV G I + D + L+I + + DR D L Sbjct: 402 GFNRLGGNSLAETVVAGM---IVGKYVADFCLGN---ELEIDTALVEKFVKKQQDRIDEL 455 Query: 458 RHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWN 517 +G ++ +MQ M G+FR L + L L + ++ + + N Sbjct: 456 IAGEGKENVFEIKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGAN 515 Query: 518 SDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLC-WV 576 +L E L + ++ A+ Y A AR ESRG+HARED+ R+D +W +L W Sbjct: 516 PELEEALRVPRMLKLALCVAYGALARTESRGAHAREDYPK-----RNDRDWLNRTLASWP 570 Query: 577 DWNTGKIKLDYRPV 590 + + L+Y P+ Sbjct: 571 EGEALEPTLEYEPL 584 >gnl|CDD|180495 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 543 Score = 386 bits (993), Expect = e-107 Identities = 204/555 (36%), Positives = 288/555 (51%), Gaps = 62/555 (11%) Query: 19 DVVVVGAGGAGLRATLG--------MAEKG--FKTACITKVFPTRSHTVAAQGGIAASLA 68 DV+++G+GGAG RA + + KG K+ C TV A+GG A L Sbjct: 9 DVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSGC----------TVMAEGGYNAVLN 58 Query: 69 NMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRP 128 DS++ H DT+KG +L D ++ L EAP+ + +LE +G F R E G+I QRP Sbjct: 59 P--EDSFEKHFEDTMKGGAYLNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRP 116 Query: 129 FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC 188 FGG Q++ RTC A DRTGH ++ L +K + E A+ LI++ Sbjct: 117 FGG--QSF------NRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREV 168 Query: 189 VGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME 248 +G + L GEI AK +LATGG G+ Y ++ TGDG + RAG L DME Sbjct: 169 IGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDME 228 Query: 249 FVQFHPTGI----YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM 304 VQFHPTG+ G G L+TE RGEGG L N GERFM+RY P +L++RDVV+R + Sbjct: 229 MVQFHPTGMVYPYSGRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAI 288 Query: 305 MMEIREGRGVGKSKDHIHLYLN--HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPT 362 EI+EGRG +H +YL+ HL V++E+L + E GVD+ ++P+ V PT Sbjct: 289 YTEIQEGRGT----NHGGVYLDVTHLPDEVIEEKLETMLEQFLDV-GVDIRKEPMEVAPT 343 Query: 363 VHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFG 422 H+ MGGI N E PGL A GE VHGANRLG N+L D VFG Sbjct: 344 AHHFMGGIRINEDCETN----------IPGLFACGEV-AGGVHGANRLGGNALADTQVFG 392 Query: 423 RAAVIRASEMIDKSSPIPSLDISSCD--RIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480 A A++ + + D RI L +G + L +++++ M Sbjct: 393 AIAGKSAAKNAENNEFKKVNRSVEEDIARIKSEIKFL---NGSINPYDLIDELKKTMWDY 449 Query: 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA 540 + R + L ++ L +++ DLKV+ D + LEL+N+++ A + SA Sbjct: 450 VSIVRNEKGLKKALEEINELKEKLKDLKVNGI-----VDFNKALELENMILVAELVIKSA 504 Query: 541 EARKESRGSHAREDF 555 RKESRG+H RED+ Sbjct: 505 LLRKESRGAHYREDY 519 >gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 626 Score = 372 bits (957), Expect = e-103 Identities = 216/625 (34%), Positives = 310/625 (49%), Gaps = 84/625 (13%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DS 74 HSYDVVV+GAGGAGLRA + E+G + A + K ++HTV A+GG AA++ N+ P D+ Sbjct: 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDN 66 Query: 75 WQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQ 134 WQ H DT++G +L + + A EAP V+ELE YG F R + G+I QR FGGH Sbjct: 67 WQVHFRDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGH-- 124 Query: 135 NYGEGPPVQRTCAAADRTGHAILHTL---------YGQALKNNAEFFIEYFALDLI---I 182 P R DRTG ++ TL A + E I+ FA I + Sbjct: 125 ---TYP---RLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELL 178 Query: 183 NSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGL 242 G G + E+G F A VVLATGG G+++ +++ TGDG + RAG Sbjct: 179 KDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGA 238 Query: 243 PLQDMEFVQFHPTGIYGA----GCLITEGARGEGGYLVNSKGERFMERYAPSA------- 291 L +MEFVQFHPTG+ G L+TEG RG+GG L NS+G+RFM Y P Sbjct: 239 TLINMEFVQFHPTGMVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAE 298 Query: 292 ------------------KDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN---HLDP 330 +L RD V+R + E++ GRG H +YL+ L Sbjct: 299 TEEEADRWYKDNDNNRRPPELLPRDEVARAINSEVKAGRG----SPHGGVYLDIASRLPA 354 Query: 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFA 390 ++ RLP + + A VD+T++P+ V PT HY MGG+ EV D ++ Sbjct: 355 EEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGV------EV-DPDTGAAT--V 405 Query: 391 PGLMAIGEAGCAS-VHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDR 449 PGL A GE CA +HG+NRLG NSL DL+VFGR A + A++ + P++ + D Sbjct: 406 PGLFAAGE--CAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDA 463 Query: 450 IMDR----FDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMA 505 F+ R A P L ++Q+ M G+ R +D + L+ L + A Sbjct: 464 AAREALAPFE--RPAGAENPY-TLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAA 520 Query: 506 DLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD 565 ++ V + +N L+L+N+++ + +A R ESRG H R+D D Sbjct: 521 NVSV-EGHRQYNPGWHLALDLRNMLLVSECVARAALERTESRGGHTRDDHPGM------D 573 Query: 566 VNWRKHSL-CWVDWNTGKIKLDYRP 589 WR+ +L C D G + + +P Sbjct: 574 PEWRRINLVCRADPVGGHVTVTRQP 598 >gnl|CDD|161923 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. Length = 488 Score = 330 bits (849), Expect = 5e-91 Identities = 195/547 (35%), Positives = 264/547 (48%), Gaps = 67/547 (12%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75 HS DVVV+G+G AGL A L +A++G ++K T ++ AQGGIAA LA DS Sbjct: 1 HSCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAE--TDSI 57 Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQN 135 H+ DT+ + D +A++++ +A +V L GV F R+E G GGH Sbjct: 58 DSHVEDTLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYR 117 Query: 136 YGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAW 194 R AAD TG ++ TL +AL + N ALDL+I + G VGV W Sbjct: 118 --------RILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVW 168 Query: 195 QLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254 ET E A VVLATGG G+ Y T+ TGDG + RAG+ ++D+EF QFHP Sbjct: 169 NRETVET--CHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHP 226 Query: 255 TGIYGAGC---LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG 311 T +Y LITE RGEG YLV+ G RFM + P +LA RD+V+R + E++ G Sbjct: 227 TALYKPRARYFLITEAVRGEGAYLVDRDGTRFMADFHPRG-ELAPRDIVARAIDHEMKRG 285 Query: 312 RGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIP 371 D + L + ++ ++R P I AG+D TR+PIPV+P HY GGI Sbjct: 286 GA-----DCVFLDASGIEA--FRQRFPTIYAKCL-GAGIDPTREPIPVVPAAHYTCGGIS 337 Query: 372 TNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 + G PGL AIGE C +HGANRL SNSL++ +VFG +A S Sbjct: 338 VDDHGRTT----------VPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 Query: 432 MIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQL---DAGVFRTQD 488 +S I + R + DR L+ M AG+ R Sbjct: 388 RPPYASDISTSPPWDEPRSENPDDR----------VVLQHNMSELRSFMWDYAGIVRLTK 437 Query: 489 SLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG 548 SL R L L E ++ EL+NL+ A SA R+ESRG Sbjct: 438 SLERALRRLVMLQQE-----------------IDEYELRNLVQVAKLITRSALMREESRG 480 Query: 549 SHAREDF 555 +H R D+ Sbjct: 481 AHFRLDY 487 >gnl|CDD|181220 PRK08071, PRK08071, L-aspartate oxidase; Provisional. Length = 510 Score = 312 bits (801), Expect = 2e-85 Identities = 192/562 (34%), Positives = 272/562 (48%), Gaps = 69/562 (12%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWH 78 DV+++G+G A L + + + ITK S++ AQGGIAA++A T DS H Sbjct: 5 DVIIIGSGIAALTVAKELCHE-YNVIIITKKTKRNSNSHLAQGGIAAAVA--TYDSPNDH 61 Query: 79 LYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGE 138 DT+ + A++YL E P+ + EL G+PF +E G ++ G H + Sbjct: 62 FEDTLVAGCHHNNERAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKR--- 118 Query: 139 GPPVQRTC-AAADRTGHAILHTLYGQALKNNAEFFIEY-FALDLIINSEGCCVGVVAWQL 196 R A D TG +L L + + + +E +DLII G C+GV+ + Sbjct: 119 -----RILHAGGDATGKNLLEHLLQELVPHVT--VVEQEMVIDLII-ENGRCIGVL-TKD 169 Query: 197 ETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTG 256 G++ R+ A VVLA+GG G Y ++ T TGDG M RAG L D+EF+QFHPT Sbjct: 170 SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTM 229 Query: 257 IYGAG-C--LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRG 313 +Y G C L++E RGEG L+N G RFM P DLA RDVV+R + E+ G Sbjct: 230 LYANGRCVGLVSEAVRGEGAVLINEDGRRFMMGIHPL-ADLAPRDVVARAIHEELLSGEK 288 Query: 314 VGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTN 373 V YLN +ER P IS GVD+ IPV+P H+ MGG+ TN Sbjct: 289 V---------YLNISSIQNFEERFPTISALCEK-NGVDIETKRIPVVPGAHFLMGGVKTN 338 Query: 374 YWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI 433 GE PGL AIGE C VHGANRL SNSL++ +VFG+ RA+E I Sbjct: 339 LDGETS----------IPGLYAIGEVACTGVHGANRLASNSLLEGLVFGK----RAAEHI 384 Query: 434 DKSSPIPSLDISSCDRIMDRFDRL--RHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS 491 + R+ ++ H+PT +E++Q M G+ RT+ SLS Sbjct: 385 -LTKATK-------PRLNPFAEKEKKFIVLNHLPT---KEEIQEKMMKYVGIVRTEQSLS 433 Query: 492 DGCRNLS--CLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS 549 + R L + + + D E +EL +++ A V SA R ESRG Sbjct: 434 EAKRWLEKYGVRNMILDHDALTN---------EEIELSHMLTVAKLIVVSALQRTESRGG 484 Query: 550 HAREDFKDGEFGGRDDVNWRKH 571 H R D+ + G++ V ++ Sbjct: 485 HYRSDYPHRNWRGKEIVRTKRK 506 >gnl|CDD|178411 PLN02815, PLN02815, L-aspartate oxidase. Length = 594 Score = 307 bits (789), Expect = 4e-84 Identities = 199/571 (34%), Positives = 278/571 (48%), Gaps = 78/571 (13%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW 77 +D +V+G+G AGLR L +AE G A ITK P S+T AQGG++A L DS + Sbjct: 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLD--PSDSVES 86 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 H+ DTI +L D + ++ + E P+ V EL G F E G ++ GGH + Sbjct: 87 HMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHH-- 144 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAE--FFIEYFALDLIINSEG---CCVGVV 192 R AAD TG I L +A+KN+ FF +FA+DL+ + +G C G Sbjct: 145 ------RIVHAADMTGREIERALL-EAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGAD 197 Query: 193 AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 TGE+ RF +K+ +LA+GG G Y S T+ TGDG M RA + +MEFVQF Sbjct: 198 VLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQF 257 Query: 253 HPTGIYGAGC------------LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300 HPT + G LITE RG+GG L N GERFM Y A +LA RDVV Sbjct: 258 HPTALADEGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDERA-ELAPRDVV 316 Query: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGI-SESARIFAGVDVTRDPIPV 359 +R + ++++ + ++ L ++H + P I +E + G+D+T+ PIPV Sbjct: 317 ARSIDDQLKKRN-----EKYVLLDISHKPREEILSHFPNIAAECLKR--GLDITKQPIPV 369 Query: 360 IPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLV 419 +P HY GG+ T GE N + GL A GE C +HGANRL SNSL++ + Sbjct: 370 VPAAHYMCGGVRTGLQGE---TNVQ-------GLYAAGEVACTGLHGANRLASNSLLEAL 419 Query: 420 VFGRAAVIRASEMIDKSS----------PIPSLDISSCDRIMDRFDRLRHADGHVPTAAL 469 VF R AV + S + P + D +MD TA + Sbjct: 420 VFARRAV-QPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEW--------TAVV 470 Query: 470 REKMQRAMQLDAGVFRTQDSLS---DGCRNLSCLWDEMADLKVHDRSLIWNSDLV--ETL 524 R+++QR M G+ R+ + L L W+ + L H W +V E Sbjct: 471 RKELQRIMWNYVGIVRSTERLETAERKLEELEAEWEAI--LFRHG----WKPTMVGLEAC 524 Query: 525 ELQNLMINAIATVYSAEARKESRGSHAREDF 555 E++NL A V SA ARKESRG H D+ Sbjct: 525 EMRNLFCVAKLVVSSALARKESRGLHYTTDY 555 >gnl|CDD|180957 PRK07395, PRK07395, L-aspartate oxidase; Provisional. Length = 553 Score = 307 bits (789), Expect = 4e-84 Identities = 188/585 (32%), Positives = 281/585 (48%), Gaps = 78/585 (13%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ 76 +DV+VVG+G AGL A L + + ITK S + AQGGIAA++A DS + Sbjct: 9 QFDVLVVGSGAAGLYAALCLPSH-LRVGLITKDTLKTSASDWAQGGIAAAIAPD--DSPK 65 Query: 77 WHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRN--------EAGKIYQRP 128 H DT+K L D +A+++L +AP+++ L GV F R+ EA + RP Sbjct: 66 LHYEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAA--HSRP 123 Query: 129 FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL-KNNAEFFIEYFALDLIINSE-G 186 R AAD TG AI+ TL Q L + N E + AL L + E G Sbjct: 124 ---------------RVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETG 168 Query: 187 CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD 246 C G+ L G+I A V+LATGG G+ + T+ TGDG + RAG L+D Sbjct: 169 RCQGISL--LYQGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRD 226 Query: 247 MEFVQFHPTGIYGAGC---LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRC 303 +EF QFHPT + G LI+E RGEG +LV+++G RF Y P A +LA RDVVSR Sbjct: 227 LEFFQFHPTALTKPGAPRFLISEAVRGEGAHLVDAQGRRFAFDYHP-AGELAPRDVVSRA 285 Query: 304 MMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363 + +++ + H+ L L + ++ R P I + + G+DV ++PIPV P Sbjct: 286 IFSHLQK-TATDPATAHVWLDLRPIPAERIRRRFPNIIRVCQKW-GIDVFQEPIPVAPAA 343 Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFG- 422 HY MGG+ T+ L+ + PGL A+GE VHGANRL SNSL++ +VF Sbjct: 344 HYWMGGVVTD-----LNNQTS-----IPGLYAVGETASTGVHGANRLASNSLLECLVFAA 393 Query: 423 RAAVIRASEMIDKSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA 481 + A + S +P + + + ++++ +R+++ + A Sbjct: 394 QLAQLELPIEPPASPDLPPISFIIDASQWKNEQEQIQR---------IRQELPELVWQSA 444 Query: 482 GVFRTQDSLSDGCRNLSCLWDEMADLKVH--------DRSLIWNSDLVET-----LELQN 528 G+ R D+L + ++A L + +++ +N E E +N Sbjct: 445 GICREADTLERAIAQVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRN 504 Query: 529 LMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSL 573 L+ A + SA R ESRG H R D+ D W+ H+L Sbjct: 505 LLDIAYLILKSALFRTESRGGHYRLDYPQ------TDPAWQVHTL 543 >gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional. Length = 536 Score = 303 bits (779), Expect = 7e-83 Identities = 180/556 (32%), Positives = 267/556 (48%), Gaps = 52/556 (9%) Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPD 73 +H DV+++G+G AGL L +AE + A ++K + T AQGGIAA L D Sbjct: 5 PEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLD--ETD 61 Query: 74 SWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHM 133 S + H+ DT+ L D DA++++A A ++V L GVPF+ +E G H+ Sbjct: 62 SIESHVEDTLIAGAGLCDEDAVRFIAENAREAVQWLIDQGVPFTTDEQ---ANGEEGYHL 118 Query: 134 QNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIEYFALDLII-----NSEGC 187 G G +R AAD TG A+ TL +A + N + A+DLI Sbjct: 119 TREG-GHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRR 177 Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDM 247 VG + AK VVLATGG + Y T+ +GDG M RAG + +M Sbjct: 178 VVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANM 237 Query: 248 EFVQFHPTGIYGAGC---LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM 304 EF QFHPT +Y LITE RGEG YL G RFM + A +LA RD+V+R + Sbjct: 238 EFNQFHPTCLYHPQARSFLITEALRGEGAYLKLPDGTRFMPDFDERA-ELAPRDIVARAI 296 Query: 305 MMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVH 364 E++ G D ++L ++H +++ P I E G+D+T++PIPV+P H Sbjct: 297 DHEMKR-LGA----DCVYLDISHKPADFIRQHFPTIYERCLEL-GIDITKEPIPVVPAAH 350 Query: 365 YNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRA 424 Y GG+ ++D + + GL AIGE +HGANR+ SNSL++ +V+GR+ Sbjct: 351 YTCGGV-------MVDLHGRTD---LDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRS 400 Query: 425 A---VIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA 481 A ++ +P+ D S R+ +D V +++ M Sbjct: 401 AAEDILSRLPKAPMPPTLPAWDES----------RVTDSDEEVVIQHNWHELRLFMWDYV 450 Query: 482 GVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAE 541 G+ RT L + L E+ + + R +++L LEL+NL+ A V A Sbjct: 451 GIVRTTKRLERALHRIRLLQQEIDEYYANFRV---SNNL---LELRNLVQVAELIVRCAM 504 Query: 542 ARKESRGSHAREDFKD 557 RKESRG H D+ + Sbjct: 505 ERKESRGLHYTLDYPE 520 >gnl|CDD|181125 PRK07804, PRK07804, L-aspartate oxidase; Provisional. Length = 541 Score = 282 bits (723), Expect = 2e-76 Identities = 197/575 (34%), Positives = 255/575 (44%), Gaps = 94/575 (16%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQW 77 DVVVVG+G AGL A L G + +TK T AQGGIAA L +P++ Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEA--- 74 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNY- 136 H+ DT+ L D DA++ L E P++V EL G F + G+ GGH + Sbjct: 75 HVADTLVAGAGLCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRI 134 Query: 137 ------GEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVG 190 G VQR AA R L AL ALDL+ + G G Sbjct: 135 VHAGGDATGAEVQRALDAAVR--ADPLDIREH-AL-----------ALDLLTDGTGAVAG 180 Query: 191 VVAWQLETGE------IHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL 244 V L G +H A VVLATGG G+ Y + T+ TGDG + RAG + Sbjct: 181 VTLHVLGEGSPDGVGAVH---APAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAV 237 Query: 245 QDMEFVQFHPTGIY-GAGC-----LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRD 298 D+EFVQFHPT ++ G LI+E RGEG LV+++G RFM P A DLA RD Sbjct: 238 SDLEFVQFHPTVLFLGPAAGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLA-DLAPRD 296 Query: 299 VVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIP 358 VV++ + ++ H+YL+ R P I+ S R AG+D R PIP Sbjct: 297 VVAKAIDRRMKA-------TGDDHVYLDARGIEGFARRFPTITASCRA-AGIDPVRQPIP 348 Query: 359 VIPTVHYNMGGIPTNYWG--EVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLI 416 V P HY+ GG+ T+ +G V PGL A GE C VHGANRL SNSL+ Sbjct: 349 VAPAAHYSCGGVVTDVYGRTSV------------PGLYAAGEVACTGVHGANRLASNSLL 396 Query: 417 DLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRA 476 + +V G A A+ + R + + A R ++QRA Sbjct: 397 EGLVVGERAGAAAAAHAAAAGR-------------PRATPAVGPEPGLLPALDRAELQRA 443 Query: 477 MQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIAT 536 M AGV R+ L+ L A +V E NL + A A Sbjct: 444 MTRGAGVLRSAAGLARAADRL----AAGAPARVVPG--------RADWEDTNLTLVARAL 491 Query: 537 VYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKH 571 V +A AR ESRG H REDF D DD W + Sbjct: 492 VAAALARTESRGCHWREDFPD-----TDD-EWARS 520 >gnl|CDD|181516 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 589 Score = 281 bits (720), Expect = 5e-76 Identities = 192/614 (31%), Positives = 284/614 (46%), Gaps = 62/614 (10%) Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP--DSWQW 77 V+VVG G AGL AT+ AE G + V RSH+V AQGGI ++ N DS Sbjct: 6 VIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAV-NTKGEGDSPWI 64 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 H DT+ G D+L + ++ + AP ++ L+ GV F+R G + R FGG + + Sbjct: 65 HFDDTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHH-- 122 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA----LDLIINSEGCCVGVVA 193 RT A TG +L+ L Q + + + L +++ EG C G+VA Sbjct: 123 ------RTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVA 176 Query: 194 WQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253 L T EI F A V++ATGG G + +T++ TG A V + G + EF+Q H Sbjct: 177 QDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIH 236 Query: 254 PTGIYGAGC--LITEGARGEGGYL-VNSKGER--FMERYAPSAKDLASRDVVSRCMMMEI 308 PT I G L++E ARGEGG + G+ F+E P+ +L RD+ +R EI Sbjct: 237 PTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATR----EI 292 Query: 309 -----REGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363 + G+ ++ ++L L+H DP L +L GI E F G D + P+ + P V Sbjct: 293 FDVCVEQKLGI-NGENMVYLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAV 351 Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423 HY+MGG+ +Y + PGL A GE S HGANRLG+NSL+ + G Sbjct: 352 HYSMGGLWVDY----------DQMTNIPGLFAAGECD-YSYHGANRLGANSLLSAIYGGM 400 Query: 424 AAVIRASEMIDKSSPIPSLDISSCD------RIMDRFDRLRHADGHVPTAALREKMQRAM 477 A A E I K + D+SS + ++FD + DG L +++ M Sbjct: 401 VAGPNAVEYI-KGLGKSADDVSSSVFEQALKQEQEKFDNILSMDGTENAYVLHKELGEWM 459 Query: 478 QLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATV 537 + V R D L + + L + + V+D S N T +L N++ A Sbjct: 460 TDNVTVVRENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVIT 519 Query: 538 YSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCG 597 A R ESRG+H + +F + R+D NW K ++ + + Y Sbjct: 520 IGALNRNESRGAHYKPEFPE-----RNDENWLKTTMATYTPEGEEPEFSYED-------- 566 Query: 598 GVDYSKIAPKARVY 611 VD S I P+ R Y Sbjct: 567 -VDTSLIPPRKRDY 579 >gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. Length = 603 Score = 268 bits (687), Expect = 3e-72 Identities = 175/635 (27%), Positives = 266/635 (41%), Gaps = 75/635 (11%) Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKV-FPTRSHTVAAQGGI-AASLANMTPDSWQW 77 V+VVG G AG A +AE G+ + V P R+H++AAQGGI A DS Sbjct: 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWR 60 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 H DT+KG D+ ++ LA+ +P+ + ++ GVPF+R G + R FGG Sbjct: 61 HFDDTVKGGDFRARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ---- 116 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA----LDLIINSEGCCVGVVA 193 V RT A +TG +L L + A +E + LD+I+ G++A Sbjct: 117 ----VSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIA 172 Query: 194 WQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253 L TGEI SA V+LATGGYG + +T+A A G + EF+Q H Sbjct: 173 RNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIH 232 Query: 254 PTGIYGAGC------LITEGARGEG--------------GYLVNSKGERFMERYAPSAKD 293 PT I G L++E R +G + K + F+ER P+ + Sbjct: 233 PTAIPVDGTWQSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGN 292 Query: 294 LASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP----AVLQERLPGISESARIFAG 349 L RD+ SR + G+GVG ++ ++L + D + + + E F G Sbjct: 293 LVPRDIASRAIFQVCDAGKGVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTG 352 Query: 350 VDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR 409 D + P+ + P VHY MGG+ +Y + PGL A GE S HGANR Sbjct: 353 DDPYKVPMRIFPAVHYTMGGLWVDY----------DQMTNIPGLFAAGECD-FSQHGANR 401 Query: 410 LGSNSLIDLVVFGRAA----------VIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRH 459 LG+NSL+ + G A +SE + + +P ++ +RFDRL Sbjct: 402 LGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQAALA---EEQERFDRLLK 458 Query: 460 ADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMAD-LKVHDRSLIWNS 518 G L ++ M + GV R + L + L + + + + N Sbjct: 459 MRGDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQ 518 Query: 519 DLVETLELQNLMINAIATVYSAEARKESRGSHAREDF--KDGEFGGRDDVNWRKHSLCWV 576 L + + + A A R ES G+H R +F DGE R+D + K + Sbjct: 519 VLEFARRVADYLELAELMCLDALNRNESCGAHFRPEFPTPDGE-AERNDEEFLKVTAWEF 577 Query: 577 DWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 + Y +D+ + P+ R Y Sbjct: 578 QGENDAPEFHYEE---------LDFELVPPRKRDY 603 >gnl|CDD|181010 PRK07512, PRK07512, L-aspartate oxidase; Provisional. Length = 513 Score = 267 bits (686), Expect = 4e-72 Identities = 177/544 (32%), Positives = 228/544 (41%), Gaps = 78/544 (14%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK-VFPTRSHTVAAQGGIAASLANMTPDSWQW 77 V+VG G AGL A L +A + ++ + + AQGGIAA+L DS Sbjct: 11 RPVIVGGGLAGLMAALKLAPR--PVVVLSPAPLGEGASSAWAQGGIAAALG--PDDSPAL 66 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 H DT+ L D + EAP ++ +L GVPF R+ G++ H + Sbjct: 67 HAADTLAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSR--- 123 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197 + D G AI+ L + +E ++ +G GV+A Sbjct: 124 --RRIVH--VGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLA--AT 177 Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257 G A+ VVLATGG G Y T+ G G + ARAG + D EFVQFHPT I Sbjct: 178 AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAI 237 Query: 258 YGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV 314 L TE RGEG L+N GERFM P A +LA RDVV+R + EI GRG Sbjct: 238 DIGRDPAPLATEALRGEGAILINEDGERFMADIHPGA-ELAPRDVVARAVFAEIAAGRGA 296 Query: 315 GKSKDHIHLYLNHLDP--AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPT 372 +L+ A R P + + R AG+D R PIPV P HY+MGGI Sbjct: 297 ---------FLDARAALGAHFATRFPTVYAACRS-AGIDPARQPIPVAPAAHYHMGGIAV 346 Query: 373 NYWGEVLDANSKNPERFA-PGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 + G R + PGL A GE +HGANRL SNSL++ VVF RA+E Sbjct: 347 DADG-----------RSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAA----RAAE 391 Query: 432 MIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS 491 I +P A A LR M R GV R D L Sbjct: 392 DI-AGTPAA--------AAAPLSAAAAPALDPADLALLRPIMSR----HVGVLRDADGLR 438 Query: 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHA 551 L L +D L+I A+A A AR+ESRG+H Sbjct: 439 RAIAALLPLEAGAGPA----------ADPATV----ALLI-AVA----ALAREESRGAHF 479 Query: 552 REDF 555 R DF Sbjct: 480 RTDF 483 >gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional. Length = 433 Score = 259 bits (663), Expect = 2e-69 Identities = 138/447 (30%), Positives = 222/447 (49%), Gaps = 49/447 (10%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW 77 DV++VG+G AGL + L + K K ++K +T AQGGI+ + D Sbjct: 5 ADVLIVGSGVAGLYSALNL-RKDLKILMVSKGKLNECNTYLAQGGISVARNK---DDITS 60 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 + DT+K + +++A++ LA E+ +++ +L G+ F ++E Y + G H N Sbjct: 61 FVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE-GAHSVN-- 117 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQL 196 R D TG + L + K N + +D+I N + C+G + L Sbjct: 118 ------RIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAIC--L 168 Query: 197 ETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTG 256 + + +K+ +LATGG G + ++T+ TGDG + R + ++D++++Q HPT Sbjct: 169 KDNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTA 228 Query: 257 IYGAGC-----LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG 311 Y LI+E RGEGG L+NSKGERF+ +L RDVV++ ++ E+++ Sbjct: 229 FYEETIEGKKFLISESVRGEGGKLLNSKGERFV-------DELLPRDVVTKAILEEMKK- 280 Query: 312 RGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIP 371 S +++L + LD L+ R P I E + G+D+T+D IPV P HY MGGI Sbjct: 281 ---TGSN-YVYLDITFLDKDFLKNRFPTIYEEC-LKRGIDITKDAIPVSPAQHYFMGGIK 335 Query: 372 TNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 +D NSK + L A GE C VHGANRL SNSL++ +VF + R +E Sbjct: 336 -------VDLNSKTSMK---NLYAFGEVSCTGVHGANRLASNSLLEGLVFSK----RGAE 381 Query: 432 MIDKSSPIPSLDISSCDRIMDRFDRLR 458 I+ L+I+ + + Sbjct: 382 KINSEIDNIKLNITKVYTLKHDVEYYS 408 >gnl|CDD|181412 PRK08401, PRK08401, L-aspartate oxidase; Provisional. Length = 466 Score = 215 bits (550), Expect = 2e-56 Identities = 160/538 (29%), Positives = 239/538 (44%), Gaps = 96/538 (17%) Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHL 79 V +VG G AGL A + +A+KGF I +S++ AQ GIA + + DS + H+ Sbjct: 4 VGIVGGGLAGLTAAISLAKKGFDVTIIGPG-IKKSNSYLAQAGIAFPI--LEGDSIRAHV 60 Query: 80 YDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEG 139 DTI+ ++ D + + + ++ ++ L G+ F NE GGH Sbjct: 61 LDTIRAGKYINDEEVVWNVISKSSEAYDFLTSLGLEFEGNELE-------GGH------- 106 Query: 140 PPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG 199 R + TG I+ LY A + FI FA +L I + G GV G Sbjct: 107 -SFPRVFTIKNETGKHIIKILYKHA-RELGVNFIRGFAEELAIKN-GKAYGVFL----DG 159 Query: 200 EIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYG 259 E+ +F A V+ATGG+ + + G G G P +D+EFVQFHPTG G Sbjct: 160 ELLKFDA--TVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIG 217 Query: 260 AGC--LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317 LI+E RG G LV GERF+ +L +RD+V+R + +++EG+GV Sbjct: 218 KRGTYLISEAVRGAGAKLVTGDGERFV-------NELETRDIVARAIYRKMQEGKGV--- 267 Query: 318 KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGE 377 +L+ + R P I R G+D +RD IPV P HY +GGI + + Sbjct: 268 ------FLDATGIEDFKRRFPQIYAFLRK-EGIDPSRDLIPVTPIAHYTIGGISVDTF-- 318 Query: 378 VLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS 437 KN L AIGEA HGANRL SNSL++ +V G + + I + Sbjct: 319 -YRTGIKN-------LYAIGEAASNGFHGANRLASNSLLECIVSG----LEVARTISRER 366 Query: 438 PIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNL 497 P ++ + + H ++RE + AG+ R+++SL +G + L Sbjct: 367 P----------KLREVKEPPYHGYELGDVDSIREILWN----HAGIVRSEESLREGLKKL 412 Query: 498 SCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF 555 ++ R L + A + A AR+ESRG+H REDF Sbjct: 413 E-------GIEADPR----------------LKLLAKGVLECALAREESRGAHYREDF 447 >gnl|CDD|181040 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 640 Score = 198 bits (507), Expect = 2e-51 Identities = 193/646 (29%), Positives = 276/646 (42%), Gaps = 94/646 (14%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-----PTRSHTVAAQGGIAASLANMTP 72 +DV+VVG G AG A + E G+ KVF P R+H++AAQGGI A+ Sbjct: 36 FDVIVVGTGLAGASAAATLGELGYNV----KVFCYQDSPRRAHSIAAQGGINAAKNYQND 91 Query: 73 -DSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGG 131 DS YDT+KG D+ + LA + + + GVPF+R G + R FGG Sbjct: 92 GDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGG 151 Query: 132 HMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL-----KNNAEFFIEYFALDLIINSEG 186 Q V RT A +TG +L Y QAL + + LDL++ +G Sbjct: 152 -AQ-------VSRTFYARGQTGQQLLLGAY-QALSRQIAAGTVKMYTRTEMLDLVV-VDG 201 Query: 187 CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD 246 G+VA L TGEI R +A VVLATGGYG ++ +T+A + G + Sbjct: 202 RARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFAN 261 Query: 247 MEFVQFHPTGIYGAG------CLITEGARGEGGYLVNSK------------GER--FMER 286 F Q HPT I +G L++E R +G V K ER ++ER Sbjct: 262 PCFTQIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEEERDYYLER 321 Query: 287 YAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHL----YLNHLDPAVLQERLPGISE 342 P+ +L RDV SR GRGVG + ++L + L V++ER + + Sbjct: 322 RYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFD 381 Query: 343 SARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCA 402 G + P+ + P VHY MGG+ +Y N PGL IGEA Sbjct: 382 MYERITGENPYETPMRIYPAVHYTMGGLWVDY----------NLMSTIPGLFVIGEANF- 430 Query: 403 SVHGANRLGSNSLIDLVV---FGRAAVIRASEMIDKSSPIPSLDISSCD----RIMDRFD 455 S HGANRLG+++L+ + F I +P S D + DR D Sbjct: 431 SDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKVSTDHPEFKEAEAEVQDRID 490 Query: 456 RLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDE-MADLKVHDRSL 514 RL + G + ++ + M G+ R ++ L + L +E +++V + Sbjct: 491 RLLNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSAD 550 Query: 515 IWNSDL------VETLELQNLMINAIATVYSAEARKESRGSHAREDF--KDGEFGGRDDV 566 N +L + LEL LM A R+ES G H RE+ +DGE RDD Sbjct: 551 ELNQELEKAGRVADFLELGELM------CRDALHREESCGGHFREEHQTEDGE-ALRDDE 603 Query: 567 NWRKHSLCWVDWNTGKIKLDYRPV-HTELLCGGVDYSKIAPKARVY 611 N+ + W GK PV H E L ++ + R Y Sbjct: 604 NF-AYVAAWEYKGDGK-----EPVLHKEPL----EFENVKLAQRSY 639 >gnl|CDD|162543 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. Length = 439 Score = 163 bits (414), Expect = 1e-40 Identities = 141/473 (29%), Positives = 192/473 (40%), Gaps = 102/473 (21%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG---IAASLANMT---- 71 DVVVVG+G AGL A L + G + + P GG IAA N Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMP-------VIGGNSAIAAGGMNAAGTDQ 53 Query: 72 ------PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIY 125 DS + + DT+KG + D + ++ LA E+ + GV ++ + Sbjct: 54 QKALGIEDSPELFIKDTLKGGRGINDPELVRILAEES-ADAVDWLQDGVGARLDDLIQ-- 110 Query: 126 QRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSE 185 GGH P +G I+ LY +A K + + DLI + + Sbjct: 111 ---LGGHSVPRAHRP------TGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ 161 Query: 186 GCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR------AY------FSATSAHTCTGDG 233 G VGVV + + I+ +AK VVLATGG+G Y +T+ TGDG Sbjct: 162 GTVVGVVV-KGKGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDG 220 Query: 234 AGMVARAGLPLQDMEFVQFHPTG-IYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAK 292 M + G L DM+++Q HPT G LI+E RG G LVN GERFM Sbjct: 221 LLMAEKIGAALVDMDYIQAHPTASPDEGGFLISEAVRGYGAILVNKTGERFMN------- 273 Query: 293 DLASRDVVSRCMMMEIREGRGVG-------KSKDHIHLYLNHLDPAVLQE--------RL 337 +LA+RD VS I G + N+ V + + Sbjct: 274 ELATRDTVS----DAILAQPGKSAYLIFDDDVYKKAEMVDNYYRLGVAYKGDSLEELAKQ 329 Query: 338 PGISESA----------------------RIFAGVDVTRDPIPVI---PTVHYNMGGIPT 372 GI +A + D+++ P I P VH+ MGG+ Sbjct: 330 FGIPAAALKKTVKDYNEYVASGKDTPFGRPMDMPDDLSKSPYYAIKVTPGVHHTMGGVKI 389 Query: 373 NYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA 425 N EVLDA K PGL A GE VHGANRLG N++ D +VFGR A Sbjct: 390 NTKAEVLDAQGKP----IPGLFAAGEV-TGGVHGANRLGGNAIADCIVFGRIA 437 >gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated. Length = 506 Score = 134 bits (340), Expect = 5e-32 Identities = 132/484 (27%), Positives = 198/484 (40%), Gaps = 81/484 (16%) Query: 8 KSSYT---YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA 64 K+SYT + YD+V+VGAGGAG+ A + + G + K+ +T+ A G+ Sbjct: 49 KTSYTDPSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMN 108 Query: 65 AS-----LANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRN 119 AS A DS +T+KG D ++Y + ++ L+ G+ Sbjct: 109 ASETKFQKAQGIADSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGI----- 163 Query: 120 EAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA-- 177 K+ G M +RT D G A+ L LKN E I F Sbjct: 164 ---KLDNLTITGGMS-------EKRTHRPHD--GSAVGGYLVDGLLKNVQERKIPLFVNA 211 Query: 178 -LDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR------------AYFSAT 224 + I +G GV ++ E S+K VV+ TGG+G + T Sbjct: 212 DVTKITEKDGKVTGVKV-KINGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTT 270 Query: 225 SAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFM 284 + TGDG M+ + G DM+ +Q HPT LI E RGEG LVN KG+RF Sbjct: 271 NQEGSTGDGIKMIEKLGGTTVDMDQIQIHPTVQQSKSYLIGEAVRGEGAILVNQKGKRFG 330 Query: 285 -----------------ERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNH 327 E+YA D +D V + E +G + I Sbjct: 331 NELDTRDKVSAAINKLPEKYAYVVFDSGVKDRVK---AIAQYEEKGFVEEGKTIDELAKK 387 Query: 328 LD-PA-VLQERLPGISESARI--------FAGVD--VTRDP---IPVIPTVHYNMGGIPT 372 ++ PA L + L +++ + G+D ++ P I + P +HY MGG+ Sbjct: 388 INVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDLSTGPYYAIKIAPGIHYTMGGVKI 447 Query: 373 NYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM 432 N EVL + GL A GE +HG NR+G NS+ D+++FGR A +++E Sbjct: 448 NTNTEVLKKDGSP----ITGLYAAGEV-TGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 Query: 433 IDKS 436 Sbjct: 503 AKAQ 506 >gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional. Length = 554 Score = 94.7 bits (236), Expect = 6e-20 Identities = 146/623 (23%), Positives = 238/623 (38%), Gaps = 127/623 (20%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAA---SLANM-- 70 D++V+G G AG A + E+ A +V V G I+ L N Sbjct: 8 VETDILVIGGGTAGPMAAIKAKER--NPAL--RVLLLEKANVKRSGAISMGMDGLNNAVI 63 Query: 71 ----TPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAG---- 122 TP+ + + TI +D + D A+ A + +++ +L+ +GV F ++E G Sbjct: 64 PGHATPEQYTKEI--TI-ANDGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAV 120 Query: 123 -KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLI 181 K++ HM +Y GH I LY Q + A L+ Sbjct: 121 KKVH------HMGSY----------VLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLL 164 Query: 182 INSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR-----------AYFSATSAHTCT 230 +++G G + + TGE AK V+L G GR Y + T+A Sbjct: 165 TDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNA---- 220 Query: 231 GDGAGMVARAGLPLQDMEFVQFHP--TGIYGAGCLITEGARGEGGYLVNSKGERFMERYA 288 GDG M AG L ++E Q +P G C G GGY N+KGERF+E Sbjct: 221 GDGYAMAYHAGAELANLECFQINPLIKDYNGPACAYVTGPL--GGYTANAKGERFIECDY 278 Query: 289 PSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESAR--- 345 S + MM E + G + L L+HL +Q + + R Sbjct: 279 WSGQ-----------MMWEFYQELQSGNGP--VFLKLDHLAEETIQTIETILHTNERPSR 325 Query: 346 --IFA--GVDVTRDPIP-VIPTVHYNMG----GIPTNYWGEVLDANSKNPERFAPGLMAI 396 G D + + I + + G G+ N E PGL A Sbjct: 326 GRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETT----------VPGLYAA 375 Query: 397 GEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDR-FD 455 G+ ASV N ++ +G A A+E + +P +D + + R Sbjct: 376 GDM--ASV------PHNYMLGAFTYGWFAGENAAEYVA-GRDLPEVDAAQVEAERARVLA 426 Query: 456 RLRHADGHVPTAALREKMQRAMQ--LDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRS 513 L DG +P A + K++R + L + + G + + + +++ +K D Sbjct: 427 PLHREDG-LPPAQVEYKLRRLVNDYLQPP--KVTRKMEIGLQRFAEIREDLERIKARD-- 481 Query: 514 LIWNSDLVETLELQNLM----INAIATVYSAEARKESRGS--HAREDFKDGEFGGRDDVN 567 + +L+ LE+ ++ + A A+++ R ESR H R DF + R+D Sbjct: 482 --PH-ELMRALEVSSIRDCAEMAARASLF----RTESRWGLYHYRVDFPE-----RNDAE 529 Query: 568 WRKHSLCWVDWNTGKIKLDYRPV 590 W H+ D + G++ RPV Sbjct: 530 WFCHTHLRKDED-GRMVSFKRPV 551 >gnl|CDD|180733 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha; Validated. Length = 608 Score = 76.5 bits (189), Expect = 2e-14 Identities = 145/661 (21%), Positives = 242/661 (36%), Gaps = 150/661 (22%) Query: 14 VDHSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLA--- 68 V+ D++++G G AG A E K + K RS VA G++A A Sbjct: 8 VEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQ--GLSAINAYIG 65 Query: 69 -NMTPDSWQWHLYDTIKGSDWLGDV--DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIY 125 TP+ + ++ D +G V D + +A V+ E +G+P ++E GK Y Sbjct: 66 EGETPEDY----VRYVRK-DLMGIVREDLVYDIARHVDSVVHLFEEWGLPIWKDENGK-Y 119 Query: 126 QRPFGG---HMQNYGEG--PPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL 180 R G M N GE P V AA G +L N F + Sbjct: 120 VR--RGRWQIMIN-GESYKPIVAE--AAKKALGDNVL----------NRVFITDL----- 159 Query: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG----Y---------GRAYFSATSAH 227 + + G V + + + + F AK V++ATGG Y GR ++ + Sbjct: 160 -LVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFN-- 216 Query: 228 TCTGDGAGMVARAG--LPLQDMEFVQFH------PTGIYGAGCLITEGARGEGGYLVNSK 279 TG G M RAG + + F+ P G + VN+ Sbjct: 217 --TGSGYAMGIRAGAEMTTFENRFIPLRFKDGYGPVGAW---------FLLFKAKAVNAL 265 Query: 280 GERFMERYAPSAKDLASRD---VVSRC-----MMMEIREGRGVGKSKDHIHLYLNH-LDP 330 GE + + A K + C + E + GRG I++ L Sbjct: 266 GEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEENKAGRG------PIYMDTEEALQD 319 Query: 331 AVLQERL--------PGISESARIFAGVDV--TRDPIPVIPTVHYNMGGIPT--NYW--- 375 L+ L PG A ++A ++ + ++ T Y +G YW Sbjct: 320 KHLESELWEDFLDMTPGQ---ALLWAAQNIEPEEENSEIMGTEPYIVGSHSGASGYWVSG 376 Query: 376 -GEVLDANSK---NPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431 + + K N GL A G+ S H + S S + GR A A Sbjct: 377 PEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGSFAE----GRIAAKAAVR 429 Query: 432 MI-DKSSPIPSLDISSCDRI-------MDRFDRLRHA-------DGHVPTAALREKMQRA 476 I D P +D + + ++R++ + ++ L E++Q+ Sbjct: 430 YILDNKDEKPEIDDDQIEELKKEIYAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKI 489 Query: 477 M-QLDAGV---FRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMIN 532 M + G+ + T + L + L + +E ++ K+ R L +L+ EL++ ++ Sbjct: 490 MDEYAGGISTNYTTNEKLLEIALELLEMLEEDSE-KLAARDL---HELMRCWELKHRLLV 545 Query: 533 AIATVYSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV 590 A A + RKE+R G + R D+ G+DD NW+ D TG+ + P Sbjct: 546 AEAHIRHLLFRKETRWPGYYERADYP-----GKDDENWKCFVNSRYDPGTGEWTIRKLPY 600 Query: 591 H 591 + Sbjct: 601 Y 601 >gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional. Length = 1167 Score = 66.7 bits (163), Expect = 1e-11 Identities = 48/142 (33%), Positives = 64/142 (45%), Gaps = 29/142 (20%) Query: 199 GEIHRFSAKLVVLATGGYG---------RAY------FSATSAHTCTGDGAGMVARAGLP 243 G++ A V+LATGG+ R Y F T+ TGDG + + G Sbjct: 602 GQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTTNGPWATGDGVKLARKLGAT 661 Query: 244 LQDMEFVQFHPTGIYG-------AGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLAS 296 L DM+ VQ HPTG+ L E RG GG L+N GERF+ +L Sbjct: 662 LVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFV-------NELDL 714 Query: 297 RDVVSRCMMMEIREGRGVGKSK 318 R VVS+ ++ + E G G SK Sbjct: 715 RSVVSQAIIAQGNEYPGSGGSK 736 Score = 59.4 bits (144), Expect = 3e-09 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Query: 359 VIPTVHYNMGGIPTNYWGEVL-DANSKNP---ERFAPGLMAIGEAGCASVHGANRLGSNS 414 V P++HY MGG + E+ + NS N R GL GE VHG NRLG NS Sbjct: 825 VTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEV-TGGVHGGNRLGGNS 883 Query: 415 LIDLVVFGRAAVIRASEMIDKSS 437 L++ VVFG+ A RA+ ++ K Sbjct: 884 LLECVVFGKIAGDRAATILQKKK 906 >gnl|CDD|184334 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing protein; Provisional. Length = 897 Score = 66.8 bits (163), Expect = 2e-11 Identities = 144/593 (24%), Positives = 220/593 (37%), Gaps = 108/593 (18%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVA-AQGGI--AASLANMTPDSW 75 DV+V+G G AG A L AE G + K S +A G+ A P+ + Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDY 74 Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPF---GGH 132 + + + +D + + + A V LE YGV F ++E G+ R G + Sbjct: 75 ---VAEITRANDGIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSY 131 Query: 133 MQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK--NNAEFFIEYFALDL-IINSEGCCV 189 + EG V++ LY + IE + + ++ G V Sbjct: 132 VLPMPEGKDVKKA--------------LYRVLRQRSMRERIRIENRLMPVRVLTEGGRAV 177 Query: 190 GVVAWQLETGEIHRFSAKLVVLATGGYGR------AYFSATSAH-TCTGDGAGMVARAGL 242 G A TGE AK V+LATG GR Y T + T GDG M AG Sbjct: 178 GAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGA 237 Query: 243 PLQDMEFVQFHP--TGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300 L +E Q +P G C A GGY VN++GERF++ D Sbjct: 238 ELSGIECFQINPLIKDYNGPACAYV--ANPFGGYQVNAQGERFVD-----------SDYW 284 Query: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI 360 S MM E++ R + ++ I+L ++HL P L I + P Sbjct: 285 SGQMMAEVK--REIESARGPIYLKVSHL-PEETLSALESILHTTE-----------RPTR 330 Query: 361 PTVHYNMG---------------GIPTNY--WGEVLDANSKNPERFAPGLMAIGEAGCAS 403 T H N G G+ + + G +D +++ PGL A G+ C Sbjct: 331 GTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTT---VPGLYAAGDLACVP 387 Query: 404 VHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS---PIPSLDISSCDRIMDRFDRLRHA 460 N +I VFG A A+ + + +P+ ++ ++ R LRH Sbjct: 388 --------HNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPADQLAEAHELIYR--PLRHP 437 Query: 461 DGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDL 520 DG P + K++R + +T LS + E+A + +L Sbjct: 438 DGP-PQPQVEYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGMGART-----PHEL 491 Query: 521 VETLELQNLMINAIATVYSAEARKESRGS--HAREDFKDGEFGGRDDVNWRKH 571 + E+ + A S+ R ESR H R D + RDD +W H Sbjct: 492 MRCAEVSFIRDCAEMAARSSLTRTESRWGLYHDRADLPE-----RDDASWGYH 539 >gnl|CDD|162677 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. Length = 614 Score = 63.4 bits (154), Expect = 2e-10 Identities = 156/665 (23%), Positives = 240/665 (36%), Gaps = 150/665 (22%) Query: 19 DVVVVGAG----GAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDS 74 D+++VG G GA A +KG K + K RS VA G++A + Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQ--GLSAINTYLGTRF 58 Query: 75 WQWHLYDTIK--GSDWLGDV--DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFG 130 + + D ++ +D +G V D I +A SV+ E +G+P Y R Sbjct: 59 GENNAEDYVRYVRTDLMGLVREDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGR 118 Query: 131 GHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNA-EFFIEYFALDLII--NSEGC 187 + +GE + +A KN + F F + L++ N+ Sbjct: 119 WQIMIHGESYKP-----------------IVAEAAKNALGDIFERIFIVKLLLDKNTPNR 161 Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGG-------------YGRAYFSATSAHTCTGDGA 234 G V + + E+H F AK V++A GG GRA+++ +A G Sbjct: 162 IAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNA----GSTY 217 Query: 235 GMVARAGLPLQDME--FVQFH---PTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAP 289 M A+AG + ME FV G GA L+ + N KGE + Sbjct: 218 TMCAQAGAEMTQMENRFVPARFKDGYGPVGAWFLLFK------AKATNGKGEEYCATNRA 271 Query: 290 SAKDLASR-----DVVSRC-----MMMEIREGRG--------------VGKSKDHIHLYL 325 K R V+ C M+ E+REGRG K HL Sbjct: 272 MLKPYEGRGYAKPHVIPTCLRNHMMLREMREGRGPIYMDTKEALQDPFATDKKQQKHLEE 331 Query: 326 ----NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGG------------ 369 + LD V Q L + VD ++PT Y MG Sbjct: 332 EAWEDFLDMTVGQANLWAATN-------VDPEERGSEIMPTEPYLMGSHSGCCGIWVSGP 384 Query: 370 ---IPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAV 426 +P Y +V A N GL G+ AS H + S S + GR A Sbjct: 385 EDWVPEEY--KVRAAKVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTE----GRIAA 435 Query: 427 IRASEMIDKSSPIPSLDISSCDRI-------MDRFDRLRHA--DGHV------PTAALRE 471 A I ++ + + M+ ++ ++A V P L Sbjct: 436 KAAVRWILDHKDFKPEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGL-M 494 Query: 472 KMQRAM-QLDAGV---FRTQDSLSDGCRNLSCLWDEMADL-KVHDRSLIWNSDLVETLEL 526 ++Q+ M + GV + T ++L D L + +E DL K+ R L +L+ EL Sbjct: 495 RLQKCMDEYGGGVTTYYMTNEALLDTGLKLMAMLEE--DLEKLAARDL---HELLRAWEL 549 Query: 527 QNLMINAIATVYSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIK 584 + + A + RKE+R G + R DF G DD NW+ D TG+ Sbjct: 550 YHRLWTVEAHMQHILFRKETRWPGYYYRADFL-----GLDDENWKCFVNSKYDPATGETT 604 Query: 585 LDYRP 589 ++ +P Sbjct: 605 IEKKP 609 >gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). Length = 617 Score = 49.7 bits (119), Expect = 2e-06 Identities = 50/216 (23%), Positives = 71/216 (32%), Gaps = 74/216 (34%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVA------AQGGIAASLANMT 71 +DV+V+G G AG A L A G KT +T T+ A GG A Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL----DTIGKCSCNPAIGGPAKG----- 51 Query: 72 PDSWQWHLYDTIKGSDWLG-------DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKI 124 L +K D LG D +Q+ Sbjct: 52 ------IL---VKEIDALGGLMGKAADKAGLQF--------------------------- 75 Query: 125 YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF-FIEYFALDLIIN 183 + N +GP V+ T A D+ + AL+N + DLI+ Sbjct: 76 -------RVLNSSKGPAVRATRAQIDKVLYR---KAMRNALENQPNLSLFQGEVEDLILE 125 Query: 184 SEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219 GVV + G +F AK V++ TG + R Sbjct: 126 DNDEIKGVV---TQDGL--KFRAKAVIITTGTFLRG 156 >gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated. Length = 618 Score = 42.3 bits (101), Expect = 4e-04 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 10/56 (17%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ------GGIA 64 YDV+VVG G AG A L A G KT +T T+ GGIA Sbjct: 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLT----HNLDTIGQMSCNPAIGGIA 53 Score = 35.8 bits (84), Expect = 0.030 Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 12/84 (14%) Query: 133 MQNYGEGPPVQRTCAAADRT--GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVG 190 M N +GP V+ A ADR A+ L Q N + F + DLI+ G VG Sbjct: 81 MLNTSKGPAVRALRAQADRKLYRAAMREILENQ---PNLDLF-QGEVEDLIVE-NGRVVG 135 Query: 191 VVAWQLETGEIHRFSAKLVVLATG 214 VV + G F AK VVL TG Sbjct: 136 VV---TQDGL--EFRAKAVVLTTG 154 >gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional. Length = 388 Score = 41.4 bits (98), Expect = 7e-04 Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46 D+ V+G G AGL A + +A G A + Sbjct: 7 HTDIAVIGGGPAGLAAAIALARAGASVALV 36 >gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 557 Score = 40.8 bits (96), Expect = 0.001 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG 62 YDVVVVG+G AG+ A L A +G T + K P + A GG Sbjct: 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKA-PHYGGSTARSGG 51 Score = 29.6 bits (67), Expect = 2.5 Identities = 39/121 (32%), Positives = 48/121 (39%), Gaps = 21/121 (17%) Query: 186 GCCVGVVAWQLETGEIHRFSAKL-VVLATGG----------YGRAYFSA---TSAHTCTG 231 G GV A E+GE A+ V+LA+GG Y RA A TG Sbjct: 239 GRVTGVHA--AESGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTG 296 Query: 232 DG--AGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGE-GGYLVNSKGERFMERYA 288 DG AG + G L M+ + PT G R G +VN G+RFM A Sbjct: 297 DGILAGE--KLGAALDLMDDAWWGPTIPLPGGPWFALSERNLPGSIIVNMSGKRFMNESA 354 Query: 289 P 289 P Sbjct: 355 P 355 >gnl|CDD|180529 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated. Length = 475 Score = 39.5 bits (93), Expect = 0.003 Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACI 46 +DVVV+GAG G A + A+ G K ACI Sbjct: 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACI 33 >gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 557 Score = 39.0 bits (91), Expect = 0.003 Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 D +YDVVVVG+GG G+ A L A+ G + + K Sbjct: 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEK 37 Score = 30.5 bits (69), Expect = 1.5 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 24/178 (13%) Query: 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVL 211 G A++ + AL + +LI+ +G VGVV + G A + V+L Sbjct: 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVV--VRDGREVLIRARRGVLL 263 Query: 212 ATGGYG------RAYFSA------TSAHTC-TGDGAGMVARAGLPLQDMEFVQFHPTGIY 258 A+GG+G + Y T+A+ TG+ R G L M+ + P Sbjct: 264 ASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAWWVPGAPL 323 Query: 259 GAGCLITEGARGE----GGYLVNSKGERFMER---YAPSAKDLASRDVVSRCMMMEIR 309 G E G +V+ G RF+ Y + + ++D V M+M+ R Sbjct: 324 PNGGPRPYMHNSERSKPGSIIVDRAGRRFVNEAGSYMEVGRAMYAQDAVPAWMIMDSR 381 >gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated. Length = 492 Score = 39.1 bits (92), Expect = 0.003 Identities = 80/312 (25%), Positives = 108/312 (34%), Gaps = 63/312 (20%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI-------AASL 67 D DVVVVG G AG A + A G + + + A GG+ A Sbjct: 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLER-AAGAGGATALSGGVIYLGGGTAVQK 76 Query: 68 ANMTPDSWQWHL-YDTIKGSDWLGDVDA--IQYLAMEAPQSVYELEHYGVPFSR------ 118 A DS + Y + VD ++ + + LE GVPF R Sbjct: 77 AAGFEDSPENMYAYLRVAVGP---GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEK 133 Query: 119 -----NEAGKIY-----QRPFGGHMQNYGEGPPVQRT---CAAADRTGHAILHTLYGQ-A 164 N+ G Y PF P R D G A+L + A Sbjct: 134 TSYPPNDEGLYYSGNEKAWPFAEI------AKPAPRGHRVQGPGDSGGGAMLMDPLAKRA 187 Query: 165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQL-ETGEIHRFSAKLVVLATGG-------- 215 + + A LI++ +G VGV A + ET I + K VVLA GG Sbjct: 188 AALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIR--ARKGVVLAAGGFAMNREMV 245 Query: 216 --YGRAYFSATSAHTCTGDGAG--MVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGE 271 Y AY T DG+G + AG M+ V A I + Sbjct: 246 ARYAPAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVF--------AWRFIYPPSALL 297 Query: 272 GGYLVNSKGERF 283 G LVN++G+RF Sbjct: 298 RGILVNARGQRF 309 >gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 584 Score = 38.3 bits (89), Expect = 0.006 Identities = 19/50 (38%), Positives = 25/50 (50%) Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI 63 D DV+VVG+GG G+ A L A +G T + K T + GGI Sbjct: 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGI 57 >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed. Length = 471 Score = 38.0 bits (89), Expect = 0.007 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 VVV+GAG AG A A+ G +T C+ + Sbjct: 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVER 35 >gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated. Length = 422 Score = 37.5 bits (88), Expect = 0.009 Identities = 15/31 (48%), Positives = 20/31 (64%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 +DV+V+G G AGL A L AE G + A + K Sbjct: 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAK 33 >gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated. Length = 463 Score = 37.5 bits (88), Expect = 0.010 Identities = 13/30 (43%), Positives = 15/30 (50%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46 YD +V+GAG AG A G K A I Sbjct: 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALI 34 >gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 277 Score = 37.3 bits (87), Expect = 0.013 Identities = 15/30 (50%), Positives = 19/30 (63%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48 DVV++G G AGL A + +A G K A I K Sbjct: 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEK 30 >gnl|CDD|132421 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. Length = 419 Score = 37.3 bits (87), Expect = 0.013 Identities = 14/30 (46%), Positives = 19/30 (63%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT 47 +DV+++G G AGL L +AE G K A I Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIA 30 >gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional. Length = 257 Score = 37.1 bits (87), Expect = 0.013 Identities = 13/26 (50%), Positives = 17/26 (65%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTA 44 DV +VGAG +GL A +A+ G K A Sbjct: 27 DVAIVGAGPSGLTAAYYLAKAGLKVA 52 >gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed. Length = 391 Score = 36.9 bits (86), Expect = 0.015 Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 + D+ +VG G G LG+A+ GF A + P Sbjct: 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPA 40 >gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). Length = 300 Score = 36.5 bits (85), Expect = 0.019 Identities = 15/34 (44%), Positives = 20/34 (58%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51 YDV+++GAG AGL A + A KT I + P Sbjct: 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP 34 >gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated. Length = 460 Score = 36.3 bits (85), Expect = 0.021 Identities = 16/32 (50%), Positives = 19/32 (59%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 YDV+V+GAG AG A A+ G K A I K Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 >gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. Length = 295 Score = 36.1 bits (84), Expect = 0.024 Identities = 16/31 (51%), Positives = 20/31 (64%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 YDVVVVGAG AG A +A+KG + + K Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEK 31 Score = 28.1 bits (63), Expect = 8.1 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 +A + AE + LD+ I+ + V + GE +AK+V+ A G Sbjct: 100 RAQEAGAELRLGTTVLDVEIHDDR-----VVVIVRGGE-GTVTAKIVIGADGSRSI 149 >gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase. Length = 447 Score = 36.2 bits (84), Expect = 0.025 Identities = 13/29 (44%), Positives = 16/29 (55%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46 D+VVVG G AGL ++E G CI Sbjct: 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCI 57 >gnl|CDD|162881 TIGR02485, CobZ_N-term, precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). Length = 432 Score = 36.0 bits (83), Expect = 0.027 Identities = 86/339 (25%), Positives = 111/339 (32%), Gaps = 57/339 (16%) Query: 130 GGHMQNYGEGP-PVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY-FALDLIINSEGC 187 G H+Q G P R A G A+ + LY A + E I Y A+D I Sbjct: 98 GVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFD 155 Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGGYG------RAYFSATSAH-----TCTGDG--- 233 L T HR + + +VLA GG G R + T G Sbjct: 156 GAHDGP--LTTVGTHRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLL 213 Query: 234 ----AGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFM----- 284 A G P D V + G ++T + G +V G RF Sbjct: 214 LQLLAEGAQAIGDP-TDGHVVAVDARAPFHDGGIVTRIDGMQLGIVVGRDGRRFADEGAI 272 Query: 285 ---ERYAPSAKDLASR-----------DVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330 ERYA + LASR D R M + L +DP Sbjct: 273 RGPERYAVWGRQLASRPGQRAYILLDADAAKRLPPMAC---PPLSADTLEELAGLLGIDP 329 Query: 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNM-GGIPTNYWGEVLDANSK---NP 386 L E L + + R A I V+P Y M GI +G V+DA ++ N Sbjct: 330 GGLAETLDRPNAAPRTGA------RMILVVPFHAYPMIPGITFTRYGLVVDATARVRLND 383 Query: 387 ERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA 425 L A G +V G L L VFGR A Sbjct: 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIA 422 >gnl|CDD|163151 TIGR03140, AhpF, alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. Length = 515 Score = 35.4 bits (82), Expect = 0.044 Identities = 15/30 (50%), Positives = 19/30 (63%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT 47 YDV+VVG G AG A + A KG +TA + Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 >gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 461 Score = 35.3 bits (82), Expect = 0.045 Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 +YDVVV+G G G A + A+ G K A + K Sbjct: 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 >gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase. Length = 529 Score = 35.1 bits (81), Expect = 0.047 Identities = 18/51 (35%), Positives = 25/51 (49%) Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM 70 VV+GAGGAG G EKG + + + A GG A +LA++ Sbjct: 382 FVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADL 432 >gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed. Length = 462 Score = 35.1 bits (82), Expect = 0.055 Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 YDV+V+GAG G A + A+ G K A + K Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK 35 >gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed. Length = 578 Score = 34.3 bits (79), Expect = 0.081 Identities = 14/28 (50%), Positives = 18/28 (64%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFK 42 D +DV+V+GAG AG+ A L A G K Sbjct: 14 DAEFDVIVIGAGAAGMSAALFAAIAGLK 41 >gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated. Length = 466 Score = 34.5 bits (80), Expect = 0.089 Identities = 50/221 (22%), Positives = 75/221 (33%), Gaps = 48/221 (21%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM--TP 72 DV+V+G G A L A L E G V + +GG + N+ Sbjct: 2 ASMVDVLVIGGGNAALCAALAAREAG------ASVLLLEAAPREWRGGNSRHTRNLRCMH 55 Query: 73 DSWQWHLYDTIKGSDWLGDVDAI----------QYLAMEAPQSVYELEHYGVPFSRNEAG 122 D+ Q L ++ D+ + + L E+ + +GV F Sbjct: 56 DAPQDVLVGAYPEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRF------ 109 Query: 123 KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY------GQALKNNAEFFIEYF 176 Q P G + V RT A G A+++ LY G ++ +A Sbjct: 110 ---QPPLSGAL-------HVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAP------ 153 Query: 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 L ++ G A G R AK VVLA GG+ Sbjct: 154 VTALELDDGRFV-GARAGSAAGGAE-RIRAKAVVLAAGGFE 192 >gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. Length = 254 Score = 34.0 bits (78), Expect = 0.10 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACI 46 DV++VGAG +GL A +A+ G K + Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVL 50 >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed. Length = 466 Score = 34.1 bits (78), Expect = 0.11 Identities = 13/30 (43%), Positives = 18/30 (60%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46 SYDVV++G G G A + + G K AC+ Sbjct: 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACV 32 >gnl|CDD|184363 PRK13879, PRK13879, conjugal transfer protein TrbJ; Provisional. Length = 253 Score = 33.9 bits (78), Expect = 0.14 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 524 LELQNLMI---NAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNW 568 L+++ L+I NAIAT A+A KE++ + A E + G + NW Sbjct: 206 LQIRGLLIAQQNAIATRMQADADKEAQQAAAAEQLRSGSYRKSPAKNW 253 >gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional. Length = 572 Score = 33.3 bits (76), Expect = 0.19 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 H+YDVVVVG+G GL A + A G K + K Sbjct: 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK 39 Score = 32.5 bits (74), Expect = 0.30 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 18/105 (17%) Query: 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLA 212 G A+ L A + + A L + G GV Q G + + + VVLA Sbjct: 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRV-QGPDGAVTVEATRGVVLA 271 Query: 213 TGGY----------------GRAYFSATSAHTCTGDGAGMVARAG 241 TGG+ GR +++ A T TGDG + G Sbjct: 272 TGGFPNDVDRRKELFPRTPTGREHWTLAPAET-TGDGISLAESVG 315 >gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed. Length = 549 Score = 33.3 bits (77), Expect = 0.20 Identities = 13/28 (46%), Positives = 17/28 (60%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFK 42 DV+VVGAG AGL A +A+ G + Sbjct: 2 AMDADVIVVGAGLAGLVAAAELADAGKR 29 >gnl|CDD|162359 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 Score = 33.3 bits (76), Expect = 0.21 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 17/97 (17%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI------------ 63 + YD++V+G G GL A A+ G K + V PT T GG Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60 Query: 64 --AASLANMTPDS--WQWHLYDTIKGSDWLGDVDAIQ 96 AA L DS + W++ +T+K DW +A+Q Sbjct: 61 HQAALLGQALKDSRNYGWNVEETVK-HDWNRLSEAVQ 96 >gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional. Length = 392 Score = 33.0 bits (76), Expect = 0.26 Identities = 14/32 (43%), Positives = 16/32 (50%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACI 46 D+VVVGAG AGL +A G K I Sbjct: 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLI 32 >gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed. Length = 466 Score = 32.7 bits (75), Expect = 0.30 Identities = 16/31 (51%), Positives = 20/31 (64%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 YDVVV+GAG G A + A+ G KTA + K Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35 >gnl|CDD|178382 PLN02785, PLN02785, Protein HOTHEAD. Length = 587 Score = 32.5 bits (74), Expect = 0.30 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Query: 4 SSNLKSSYTYVDHSYDVVVVGAGGAG--LRATL 34 SS+ SS + D +YD +VVG G AG L ATL Sbjct: 42 SSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATL 74 >gnl|CDD|184512 PRK14108, PRK14108, bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional. Length = 986 Score = 32.7 bits (75), Expect = 0.32 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 22/101 (21%) Query: 376 GEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK 435 G++ + PE+ GL+ +G GA L +S IDL+VF D+ Sbjct: 171 GKLNLPDRDAPEK-GSGLIVLGMGK----LGAGELNYSSDIDLIVF-----------FDE 214 Query: 436 SSPIPSLDISSCD---RIMDRFDRL---RHADGHVPTAALR 470 ++PI I + R+ R R+ R DG+V LR Sbjct: 215 TAPILGDPIEAQPFFVRLTRRLVRILQERTGDGYVFRVDLR 255 >gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional. Length = 517 Score = 32.4 bits (75), Expect = 0.36 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 YDV+VVG G AG A + A KG +T + + F Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF 244 >gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. Length = 985 Score = 32.4 bits (74), Expect = 0.38 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 10 SYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFK 42 +Y V+ DV+VVGAG AGL A L A G + Sbjct: 156 TYDKVNAHCDVLVVGAGPAGLAAALAAARAGAR 188 >gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional. Length = 388 Score = 32.2 bits (74), Expect = 0.44 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 22/113 (19%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75 +DVVVVG G G L +A+ G + A + P R D+W Sbjct: 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRP----------------ADDAW 47 Query: 76 QWHLYDTIKGS-DWLGDVDAIQYLAMEAPQSVYELEHYG-----VPFSRNEAG 122 +Y S +L + Q L VY++ +G + FS +AG Sbjct: 48 DSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVFGDAHARLHFSAYQAG 100 >gnl|CDD|162675 TIGR02053, MerA, mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. Length = 463 Score = 31.6 bits (72), Expect = 0.62 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46 YD+V++G+G A A + AE G A + Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMV 29 >gnl|CDD|179973 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional. Length = 461 Score = 31.7 bits (73), Expect = 0.66 Identities = 13/33 (39%), Positives = 21/33 (63%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 + YD+VV+G+G AG A + A+ G + A I + Sbjct: 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36 >gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated. Length = 415 Score = 31.1 bits (71), Expect = 0.82 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Query: 1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACI 46 S L S+ + +YDV +VG G GL + + G + A I Sbjct: 5 AATSPTLPSTRSL---TYDVAIVGGGIVGLTLAAALKDSGLRIALI 47 >gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional. Length = 384 Score = 30.9 bits (70), Expect = 0.88 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46 YD+ VVG G G LG A++G A I Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVI 32 >gnl|CDD|180075 PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional. Length = 308 Score = 30.9 bits (71), Expect = 0.95 Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 37/133 (27%) Query: 257 IYGAGCLITEGARGEGGY--------LVNSKGERFMERYAPSAKDLASRDVVSRCM---- 304 IYG G LIT GE G L+ +G R + A K + + RC Sbjct: 144 IYGIGVLIT----GESGIGKSETALELI-KRGHRLVADDAVDIKRIGPDTLEGRCPELLQ 198 Query: 305 -MMEIREGRGVG-------------KSKDHIHL--YLNHLDPAVLQERLPGISESARIFA 348 ++EIR G+G + K I L L D +RL G+ E Sbjct: 199 HLLEIR---GLGIIDVRTLFGATAVRDKKRIQLVVELEEWDEDKEYDRL-GLDEETEEIL 254 Query: 349 GVDVTRDPIPVIP 361 GV + + IPV P Sbjct: 255 GVKIPKITIPVRP 267 >gnl|CDD|178820 PRK00046, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional. Length = 334 Score = 30.9 bits (71), Expect = 0.98 Identities = 10/20 (50%), Positives = 10/20 (50%) Query: 187 CCVGVVAWQLETGEIHRFSA 206 C V A L TGE R SA Sbjct: 137 VCDYVEALDLATGEFVRLSA 156 >gnl|CDD|116565 pfam07955, DUF1687, Protein of unknown function (DUF1687). This is a putative redox protein which is predicted to have a thioredoxin fold containing a single active cysteine. Length = 135 Score = 30.9 bits (70), Expect = 1.0 Identities = 8/28 (28%), Positives = 12/28 (42%) Query: 567 NWRKHSLCWVDWNTGKIKLDYRPVHTEL 594 + K WVDW G + D + + L Sbjct: 108 LFNKQRPLWVDWEKGLVGTDKQSLKELL 135 >gnl|CDD|163241 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. Length = 516 Score = 30.4 bits (69), Expect = 1.3 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217 A ++ A F Y + +I G GV +TGE R A++V+ A G + Sbjct: 137 DAQEHGARIF-TYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 >gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed. Length = 574 Score = 30.0 bits (68), Expect = 1.6 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA 64 + + DV+V+G+G GL A + + G + K P T A GG+ Sbjct: 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKE-PVFGGTTAFSGGVL 55 Score = 30.0 bits (68), Expect = 1.7 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 18/77 (23%) Query: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY----------------GRAYFSAT 224 ++ G VG GE + + VVLA GG+ G + S Sbjct: 240 LLTEGGRVVGARVID-AGGERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPV 298 Query: 225 SAHTCTGDGAGMVARAG 241 A TGDG + G Sbjct: 299 PA-GNTGDGIRLAEAVG 314 >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional. Length = 659 Score = 30.3 bits (68), Expect = 1.7 Identities = 14/45 (31%), Positives = 19/45 (42%) Query: 3 NSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT 47 N S + D YDV ++G G G A + E+G K T Sbjct: 102 NGFATSQSMNFSDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFT 146 >gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed. Length = 581 Score = 30.1 bits (68), Expect = 1.7 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA 64 D DV+V+G+G AGL A + A G K + K P T A GG Sbjct: 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD-PVFGGTTAWSGGWM 58 >gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional. Length = 400 Score = 29.4 bits (66), Expect = 2.9 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 21 VVVGAGGAGLRATLGMAEKGFKTACITK 48 ++ GAG AGL A L +A +G+ I K Sbjct: 6 LIAGAGVAGLSAALELAARGWAVTIIEK 33 >gnl|CDD|181043 PRK07576, PRK07576, short chain dehydrogenase; Provisional. Length = 264 Score = 29.2 bits (66), Expect = 3.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKT 43 DV+V GA G GM+ GFKT Sbjct: 88 DVLVSGAAGNFPAPAAGMSANGFKT 112 >gnl|CDD|178123 PLN02507, PLN02507, glutathione reductase. Length = 499 Score = 29.0 bits (65), Expect = 3.8 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTA-CITKVFPTRSHTVAAQGG 62 +D+ V+GAG G+RA A G K C P S ++ GG Sbjct: 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGG 71 >gnl|CDD|181741 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional. Length = 427 Score = 29.1 bits (66), Expect = 3.9 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 236 MVARAGLPLQDMEFVQFH 253 ++AR GL LQD +F + H Sbjct: 318 LLARNGLTLQDFDFYEIH 335 >gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional. Length = 429 Score = 28.8 bits (64), Expect = 4.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 D +D +VVGAG AG A L MA G I + Sbjct: 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36 >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 Score = 28.6 bits (64), Expect = 4.7 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 YD++++G G AGL A + T I K Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK 35 >gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis. Length = 357 Score = 28.6 bits (64), Expect = 4.8 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 2/19 (10%) Query: 12 TYVDHSYDVVVVGAGGAGL 30 TY D DVV+VGAG AGL Sbjct: 89 TYADT--DVVIVGAGSAGL 105 >gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase. Length = 496 Score = 28.4 bits (64), Expect = 5.2 Identities = 11/20 (55%), Positives = 12/20 (60%) Query: 13 YVDHSYDVVVVGAGGAGLRA 32 S DV VVGAG +GL A Sbjct: 8 AAASSKDVAVVGAGVSGLAA 27 >gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. Length = 380 Score = 28.3 bits (63), Expect = 5.5 Identities = 14/37 (37%), Positives = 20/37 (54%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54 +DV+VVGAG G A +A+ G KT + + S Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS 37 >gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. Length = 385 Score = 28.3 bits (64), Expect = 5.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACI 46 D+V+VG G GL L +A G K A I Sbjct: 1 DIVIVGGGMVGLALALALARSGLKIALI 28 >gnl|CDD|179932 PRK05092, PRK05092, PII uridylyl-transferase; Provisional. Length = 931 Score = 28.3 bits (64), Expect = 6.3 Identities = 9/12 (75%), Positives = 9/12 (75%) Query: 208 LVVLATGGYGRA 219 L VLA GGYGR Sbjct: 106 LAVLAVGGYGRG 117 >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional. Length = 499 Score = 28.3 bits (63), Expect = 6.4 Identities = 17/48 (35%), Positives = 21/48 (43%) Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG 62 YD+VV+G G G+ A A G K A V P+ T GG Sbjct: 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGG 50 >gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365 Score = 28.0 bits (63), Expect = 6.8 Identities = 11/29 (37%), Positives = 15/29 (51%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46 YD+++VGAG GL A +G I Sbjct: 1 YDLIIVGAGILGLAHAYAAARRGLSVTVI 29 >gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. Length = 493 Score = 28.2 bits (63), Expect = 7.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKT 43 YD +V+G+G GL +A KG K Sbjct: 1 YDAIVIGSGIGGLVTATQLAVKGAKV 26 >gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). Length = 388 Score = 27.8 bits (62), Expect = 7.6 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 YDV V+G G +G A +A G +T + + Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLER 31 >gnl|CDD|165509 PHA03250, PHA03250, UL35; Provisional. Length = 564 Score = 27.8 bits (62), Expect = 7.8 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 303 CMMMEIREGRGVGKSKDHIHLYLNHLDPAVL-QERLPGISESARIFAGVDVTRDPIPVIP 361 ++ME R +G + + + YL PA L + P A +FA V R P Sbjct: 439 SLIME-GAARQLGLTPEQLMAYL-EATPAPLGTDTEPDGEPEADLFADVSR-RPARPSSK 495 Query: 362 TVHYNMGG 369 + GG Sbjct: 496 DLERPPGG 503 >gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional. Length = 1019 Score = 28.0 bits (63), Expect = 7.9 Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 20 VVVVGAGGAGLRATLGMAEKGFK 42 V V+GAG AGL A +A G Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHP 564 >gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional. Length = 400 Score = 27.7 bits (62), Expect = 8.8 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52 S DVV+ G G GL G+ G + A + + P Sbjct: 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional. Length = 561 Score = 27.7 bits (61), Expect = 9.5 Identities = 13/45 (28%), Positives = 18/45 (40%) Query: 4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 SS YD++V+G G G+ A A K A + K Sbjct: 35 SSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEK 79 >gnl|CDD|178949 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed. Length = 278 Score = 27.5 bits (62), Expect = 9.6 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHL 79 ++++GAGGA L + + G I R+ A + +A + L Sbjct: 126 ILILGAGGAARAVILPLLDLGVAEITIV----NRTVERAEE--LAKLFGALGKAELDLEL 179 Query: 80 YDTIKGSD 87 + + D Sbjct: 180 QEELADFD 187 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0723 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 10,273,784 Number of extensions: 684881 Number of successful extensions: 1812 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1583 Number of HSP's successfully gapped: 151 Length of query: 611 Length of database: 5,994,473 Length adjustment: 99 Effective length of query: 512 Effective length of database: 3,855,281 Effective search space: 1973903872 Effective search space used: 1973903872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (26.9 bits)