HHsearch alignment for GI: 254781044 and conserved domain: COG0479
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=553.45 Aligned_cols=230 Identities=55% Similarity=1.012 Sum_probs=218.2
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 07999998636888888736899864267881167899999973287638840456773544303143612663211000
Q gi|254781044|r 26 NLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMK 105 (259)
Q Consensus 26 ~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~ 105 (259)
T Consensus 1 ~~~~~~i~R~~p~~~-~p~~~~yev~~~-~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~ 78 (234)
T COG0479 1 MTLKFKIYRYNPDDD-KPYWQTYEVPYD-EGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMK 78 (234)
T ss_pred CCEEEEEEEECCCCC-CCEEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 927999999789999-850488883388-998399999999972599600355210776886645799826453122164
Q ss_pred CCCC-CEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCE
Q ss_conf 0478-5189864898044112451047999887542103466-6311011122077765446688888731313228200
Q gi|254781044|r 106 DIKG-AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTV-SPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSY 183 (259)
Q Consensus 106 ~~~~-~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~-~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~ 183 (259)
T Consensus 79 ~~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~-~~qspe~~~~~~~~~~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 79 DLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGE-RLQSPEEREKLDELSECILCGCCTAACPSI 157 (234)
T ss_pred HCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHCCCCCEECCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
T ss_conf 5567836986778998301225332899875341566055576678753-337999999997554362144404228753
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 1022210114788999885168884313889996228665276766473455189978889999999999986129
Q gi|254781044|r 184 WWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 (259)
Q Consensus 184 ~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rkl 259 (259)
T Consensus 158 ~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~~~ 232 (234)
T COG0479 158 WWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKRGL 232 (234)
T ss_pred CCCC-CCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2365-77688999999998549765341889985047887752616152314289999979999999999999740