HHsearch alignment for GI: 254781044 and conserved domain: PRK05352

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional.
Probab=97.90  E-value=8e-06  Score=56.46  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCHHHHCCCCCCHH
Q ss_conf             888887313132282001022210114788999885168884313889996228665276766--473455189978889
Q gi|254781044|r  167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHT--IMNCTQSCPKGLNPA  244 (259)
Q Consensus       167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~--C~~C~~vCPkgI~~~  244 (259)
T Consensus       373 ~Ra~I~~g~~e~v~P~d-------i~P~qL~ka~~----~~d------~e~~e-~lGi~e~~eED~alcsyvCpSK~e~~  434 (448)
T PRK05352        373 ERAMVPIGNYERVMPLD-------ILPTLLLRALI----AGD------TDEAQ-ALGALELDEEDLALCTFVCPGKYEYG  434 (448)
T ss_pred             CCCEEECCHHHHHCCCC-------CCHHHHHHHHH----CCC------HHHHH-HCCCCCCCHHHCCEEEEECCCHHHHH
T ss_conf             44378867476427885-------68999999987----069------99998-75990338536414645888612489


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999999861
Q gi|254781044|r  245 KAIAKIKMMLLDR  257 (259)
Q Consensus       245 ~~I~~LRr~~v~r  257 (259)
T Consensus       435 ~i~r~~L~~~~kE  447 (448)
T PRK05352        435 PILRDCLDRIEKE  447 (448)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999764