HHsearch alignment for GI: 254781044 and conserved domain: PRK05352
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional.
Probab=97.90 E-value=8e-06 Score=56.46 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=54.9
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCHHHHCCCCCCHH
Q ss_conf 888887313132282001022210114788999885168884313889996228665276766--473455189978889
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHT--IMNCTQSCPKGLNPA 244 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~--C~~C~~vCPkgI~~~ 244 (259)
T Consensus 373 ~Ra~I~~g~~e~v~P~d-------i~P~qL~ka~~----~~d------~e~~e-~lGi~e~~eED~alcsyvCpSK~e~~ 434 (448)
T PRK05352 373 ERAMVPIGNYERVMPLD-------ILPTLLLRALI----AGD------TDEAQ-ALGALELDEEDLALCTFVCPGKYEYG 434 (448)
T ss_pred CCCEEECCHHHHHCCCC-------CCHHHHHHHHH----CCC------HHHHH-HCCCCCCCHHHCCEEEEECCCHHHHH
T ss_conf 44378867476427885-------68999999987----069------99998-75990338536414645888612489
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999861
Q gi|254781044|r 245 KAIAKIKMMLLDR 257 (259)
Q Consensus 245 ~~I~~LRr~~v~r 257 (259)
T Consensus 435 ~i~r~~L~~~~kE 447 (448)
T PRK05352 435 PILRDCLDRIEKE 447 (448)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999764