HHsearch alignment for GI: 254781044 and conserved domain: PRK06259

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional.
Probab=100.00  E-value=0  Score=522.66  Aligned_cols=222  Identities=33%  Similarity=0.629  Sum_probs=204.1

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf             07999998636888888736899864267881167899999973287638840456773544303143612663211000
Q gi|254781044|r   26 NLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMK  105 (259)
Q Consensus        26 ~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~  105 (259)
T Consensus         2 ~~i~i~V~R~~pe~d-~p~~~~y~v~~~-e~mtvL~aL~~I~~~~d~tl~fr~sCr~giCGsCav~iNG~p~LAC~t~v~   79 (491)
T PRK06259          2 KMIKVTVKRFEPETD-EPHFEEYEVPVT-EGMTVLDALEAINKTYDPNIAFRSSCRAGQCGSCAVRINGEPVLACKTEVE   79 (491)
T ss_pred             CEEEEEEEEECCCCC-CCCCEEEEECCC-CCCHHHHHHHHHHHHCCCCEEHHHHCCCCCCCCCEEEECCEEEEEEEEECC
T ss_conf             528999996477789-855566761587-988099999999861299655152056876887878889967776555516


Q ss_pred             CCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEE
Q ss_conf             04785189864898044112451047999887542103466631101112207776544668888873131322820010
Q gi|254781044|r  106 DIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWW  185 (259)
Q Consensus       106 ~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~~~  185 (259)
T Consensus        80 d---~~~IePl-~fpVikDLvVD~~~~~~k~~~i~~~~~~~~~~~~-~~~~~pe~~~~~~~~~~CI~C~~C~s~Cp~~~~  154 (491)
T PRK06259         80 D---GMIIEPL-DFPVIKDLVVDREPYYKKIATLRNYLQAKNEKIS-LEELTPEDIKDIKKLRGCIECLSCISMCPAIKV  154 (491)
T ss_pred             C---CCEEECC-CCCCEECCEEECHHHHHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHCHHHCCHHHHCCCCCC
T ss_conf             8---8567348-8862100166629999999974422166765421-123799999988877634564323744876757


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCH-HHHHHHHHHHHHHCCC
Q ss_conf             2221011478899988516888431388999622866527676647345518997888-9999999999986129
Q gi|254781044|r  186 NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNP-AKAIAKIKMMLLDRKI  259 (259)
Q Consensus       186 ~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~-~~~I~~LRr~~v~rkl  259 (259)
T Consensus       155 -~-dy~GP~~~~~~~Rf~~DpRD~~~r~~~-a~--~~gl~~Ct~C~~C~~vCPK~i~~~~~~ie~~r~~~~~~g~  224 (491)
T PRK06259        155 -S-DYPGPTFMRQLARFAFDPRDEGDREKE-AI--DEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRAKAFKEGY  224 (491)
T ss_pred             -C-CCCCHHHHHHHHHHCCCCCCCCCHHHH-HH--HCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             -7-786889999999861688776006899-98--7797437635804443887677666899999999974568