HHsearch alignment for GI: 254781044 and conserved domain: PRK08348

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=97.29  E-value=2.4e-05  Score=53.48  Aligned_cols=50  Identities=32%  Similarity=0.616  Sum_probs=32.6

Q ss_pred             HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf             6688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r  165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG  240 (259)
Q Consensus       165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg  240 (259)
T Consensus        39 ~d~dkCigC~~C~~~CP~~aI~---~------------~~~~~------~--~~i~---~~~Ci~Cg~C~~~CP~~   88 (111)
T PRK08348         39 YNVDKCVGCRMCVTVCPAGVFV---Y------------LPEIR------K--VALW---TGRCVFCGQCVDVCPTG   88 (111)
T ss_pred             CCCCCCCCCCHHHHHCCCCCCE---E------------CCCCC------E--EEEC---CCCCCCCCCCCCCCCCC
T ss_conf             6855282807287759322067---5------------27766------6--7877---79085388757737728