HHsearch alignment for GI: 254781044 and conserved domain: PRK08348
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=97.29 E-value=2.4e-05 Score=53.48 Aligned_cols=50 Identities=32% Similarity=0.616 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 6688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
T Consensus 39 ~d~dkCigC~~C~~~CP~~aI~---~------------~~~~~------~--~~i~---~~~Ci~Cg~C~~~CP~~ 88 (111)
T PRK08348 39 YNVDKCVGCRMCVTVCPAGVFV---Y------------LPEIR------K--VALW---TGRCVFCGQCVDVCPTG 88 (111)
T ss_pred CCCCCCCCCCHHHHHCCCCCCE---E------------CCCCC------E--EEEC---CCCCCCCCCCCCCCCCC
T ss_conf 6855282807287759322067---5------------27766------6--7877---79085388757737728