HHsearch alignment for GI: 254781044 and conserved domain: PRK09477
>PRK09477 napH quinol dehydrogenase membrane component; Provisional.
Probab=97.52 E-value=1.1e-05 Score=55.51 Aligned_cols=54 Identities=20% Similarity=0.453 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
T Consensus 221 ~~~~~C~~C~~C~~VCP~~~v-----ir~~l~---------~~~~~-----~~v~----~~eCI~CG~CIDvC~~~a 274 (287)
T PRK09477 221 HDREKCTRCMDCFHVCPEPQV-----LRPPLK---------GKQSS-----PQVL----SGDCTTCGRCIDVCSEDV 274 (287)
T ss_pred CCCCCCCCCCHHHHHCCCCCC-----CCHHHC---------CCCCC-----CCCC----CCCCCCHHHHHHHHCCCC
T ss_conf 788758092357675799542-----444431---------44446-----8848----831053659996718155