HHsearch alignment for GI: 254781044 and conserved domain: PRK09477

>PRK09477 napH quinol dehydrogenase membrane component; Provisional.
Probab=97.52  E-value=1.1e-05  Score=55.51  Aligned_cols=54  Identities=20%  Similarity=0.453  Sum_probs=33.0

Q ss_pred             HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r  165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL  241 (259)
Q Consensus       165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI  241 (259)
T Consensus       221 ~~~~~C~~C~~C~~VCP~~~v-----ir~~l~---------~~~~~-----~~v~----~~eCI~CG~CIDvC~~~a  274 (287)
T PRK09477        221 HDREKCTRCMDCFHVCPEPQV-----LRPPLK---------GKQSS-----PQVL----SGDCTTCGRCIDVCSEDV  274 (287)
T ss_pred             CCCCCCCCCCHHHHHCCCCCC-----CCHHHC---------CCCCC-----CCCC----CCCCCCHHHHHHHHCCCC
T ss_conf             788758092357675799542-----444431---------44446-----8848----831053659996718155