HHsearch alignment for GI: 254781044 and conserved domain: PRK12577
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional.
Probab=100.00 E-value=0 Score=578.93 Aligned_cols=228 Identities=35% Similarity=0.673 Sum_probs=215.1
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHC
Q ss_conf 79999986368888887368998642678811678999999732876388404567735443031436126632110000
Q gi|254781044|r 27 LKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKD 106 (259)
Q Consensus 27 ~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~ 106 (259)
T Consensus 2 ~v~~kI~R~~p--d~~p~~q~y~v~~~-~~~tvLdaL~~Ik~~~D~sLafR~sCr~giCGSCam~ING~~~LAC~t~v~d 78 (330)
T PRK12577 2 EVLFKILRQKQ--NSSPYVQTYTLEVD-PGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS 78 (330)
T ss_pred EEEEEEEECCC--CCCCEEEEEEEECC-CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCEEEEEEECCCHH
T ss_conf 68999981498--99975688997379-9987999999998623996354010478667756555888420133020055
Q ss_pred C-----------CCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 4-----------78518986489804411245104799988754210346663-11011122077765446688888731
Q gi|254781044|r 107 I-----------KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP-KPAKELLQSHEDRQKIDGLYECVMCA 174 (259)
Q Consensus 107 ~-----------~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~-~~~~e~~qsped~~~~~~~~~CI~CG 174 (259)
T Consensus 79 ~l~~~~~~~~~~~~~I~IePL~n~pVIkDLVVD~~~f~~k~~~vkP~l~~~~~~~p~~E~~qsPee~~k~~~~~~CIlCg 158 (330)
T PRK12577 79 ELARLSQSNSGVIPEITIAPLGNMPVIKDLVVDMSSFWQKLEAVDPYVSTAARQVPEREFLQTPEERSKLNQTGNCILCG 158 (330)
T ss_pred HHHHCCCCCCCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 54200123457788579986899961015621639999999860675447888898512368999999875667470106
Q ss_pred CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 313228200102221011478899988516888431388999622-8665276766473455189978889999999999
Q gi|254781044|r 175 CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLE-DPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMM 253 (259)
Q Consensus 175 ~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~-~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~ 253 (259)
T Consensus 159 ~C~SaCp~~~~n~d-flGPaal~kA~Rf~~DsRD~~~~eRL~~~~~~~~GvW~C~~c~~C~~vCPK~I~P~~aI~~lr~~ 237 (330)
T PRK12577 159 ACYSECNAREVNPE-FVGPHALAKAQRLVADSRDTDTEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQE 237 (330)
T ss_pred CCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 31051877444877-63799999999871487767507789985378888652862274305096999999999999999
Q ss_pred HHHCC
Q ss_conf 98612
Q gi|254781044|r 254 LLDRK 258 (259)
Q Consensus 254 ~v~rk 258 (259)
T Consensus 238 ~~~~~ 242 (330)
T PRK12577 238 ILARK 242 (330)
T ss_pred HHHHC
T ss_conf 99834