HHsearch alignment for GI: 254781044 and conserved domain: TIGR00314
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=95.13 E-value=0.022 Score=35.14 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCEEEEECC-CCEEEEE----E-EEE--
Q ss_conf 1167899999973287638840456773544303143612663211000047851898648-9804411----2-451--
Q gi|254781044|r 57 PMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLP-HMSVIKD----L-VVD-- 128 (259)
Q Consensus 57 ~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~i~iePl~-~~pVikD----L-vVD-- 128 (259)
T Consensus 251 ~p~~~i~dYleEn~~eD-~v------e~~GiCCtA~-------D~TRy~~ka--Kvvgpls~QL~~iRaG~aDV~v~DEQ 314 (795)
T TIGR00314 251 LPGADIADYLEENGMED-EV------ELCGICCTAI-------DMTRYNEKA--KVVGPLSRQLRVIRAGVADVIVVDEQ 314 (795)
T ss_pred CCHHHHHHHHHHCCCCC-CE------EEECCCCCCC-------CHHHHCCCC--CEECCCHHCEEEEECCCCCEEEECCC
T ss_conf 45125788875168403-04------5303000431-------010010478--34532010104435178737997473
Q ss_pred --HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHH-HHHHHHHHCCCHHHCC-CEEECCCCCCCHHHHHHHHHHH
Q ss_conf --047999887542103466631101-1122077765446-6888887313132282-0010222101147889998851
Q gi|254781044|r 129 --MSHFYSQHRSIEPWLKTVSPKPAK-ELLQSHEDRQKID-GLYECVMCACCSTSCP-SYWWNSDRYLGPAILLQAYRWL 203 (259)
Q Consensus 129 --~~~~~~~~~~~~p~~~~~~~~~~~-e~~qsped~~~~~-~~~~CI~CG~C~saCP-~~~~~~~~flGP~~l~~a~r~~ 203 (259)
T Consensus 315 CiRaD~Le~~~K~g~~~IaT~~k~~~gLpD~~~~~~~~Iv~~L~~--------g~~~g~llldp~KVG~VAv~vA~--~~ 384 (795)
T TIGR00314 315 CIRADILEEVKKLGIPLIATNDKACLGLPDVSDEDPDKIVDYLLS--------GNLPGALLLDPEKVGEVAVEVAK--AV 384 (795)
T ss_pred CHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCHHHHHHHHHC--------CCCCEEEEECCCCCCCHHHHHHH--HH
T ss_conf 012789999986586067341788513877776887789999853--------88657886073225634588999--87
Q ss_pred CCCC-CC---C----HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 6888-43---1----388999622866527676647345518997888999999999
Q gi|254781044|r 204 IDSR-DE---F----QGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKM 252 (259)
Q Consensus 204 ~D~r-D~---~----~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr 252 (259)
T Consensus 385 ~k~r~~~rk~k~~~~~~~~~E~------a~~CT~Cg~C~~~CP~~l~v~~am~~A~~ 435 (795)
T TIGR00314 385 AKKRKDERKIKKLPDEEELMEL------AKKCTQCGNCTRACPNSLRVKEAMAKAEK 435 (795)
T ss_pred HHCCCCCCCCCCCCCHHHHHHH------HHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 2103774334777777899999------98367887754458786517999999973