HHsearch alignment for GI: 254781044 and conserved domain: TIGR00402
>TIGR00402 napF ferredoxin-type protein NapF; InterPro: IPR004496 Members of this family are the ferredoxin-type protein subunits of nitrate reductase. These NapF proteins are involved in electron transfer, and contain iron-sulphur centres similar to those of bacterial-type 4FE-4S ferredoxins.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0006118 electron transport.
Probab=96.61 E-value=0.00031 Score=46.63 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=32.2
Q ss_pred HHHHHHHCCCHHHCCCEEE-CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 8888873131322820010-222101147889998851688843138899962286652767664734551899788
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWW-NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~-~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~ 242 (259)
T Consensus 38 ~a~CtrCg~C~saCennil~~g~~-G~p-----------------------~v~fdn--~eC~fCgkCa~aCp~~~f 88 (161)
T TIGR00402 38 VARCTRCGECLSACENNILQKGDA-GYP-----------------------EVEFDN--AECDFCGKCAEACPESLF 88 (161)
T ss_pred EEEECCCCCHHHHCCCCEEEECCC-CCE-----------------------EEEEEC--CCCCCCCHHHHHCCCCCC
T ss_conf 663188434030178450651678-850-----------------------688756--876722122642875557