HHsearch alignment for GI: 254781044 and conserved domain: TIGR03048
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.66 E-value=0.0004 Score=45.93 Aligned_cols=54 Identities=20% Similarity=0.544 Sum_probs=32.5
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
T Consensus 8 D~CIgC~~CvrvCPt~vi---eM--------------Vp~dg~~~~q~~~~~---RtedCIGC~~CE~aCPtda 61 (80)
T TIGR03048 8 DTCIGCTQCVRACPTDVL---EM--------------VPWDGCKAGQIASAP---RTEDCVGCKRCESACPTDF 61 (80)
T ss_pred CCCCCCHHHHHHCCCCCE---EE--------------CCCCCCCCCCCCCCC---CCCCCCCCCHHHHCCCCCC
T ss_conf 406680466865884514---52--------------246665446455788---6100556213443089873