HHsearch alignment for GI: 254781044 and conserved domain: TIGR03294
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=96.76 E-value=0.0027 Score=40.74 Aligned_cols=172 Identities=16% Similarity=0.259 Sum_probs=76.6
Q ss_pred EEEEEECCC-CCCCCCEEEEEEECCCCCC-----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE--ECCC------
Q ss_conf 999863688-8888736899864267881-----1678999999732876388404567735443031--4361------
Q gi|254781044|r 30 YRIYRWNPD-NKGNPCMDTYYVDLDNCGP-----MVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN--IDGT------ 95 (259)
Q Consensus 30 ~~i~R~~p~-~~~~~~~~~y~v~~~~~~~-----tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~--iNG~------ 95 (259)
T Consensus 33 v~divy~~~l~d~k-e~pe~DValVEGsV~~~~e~~le~ikeiRekskilVA~---------GaCA~~GGI~~~~~ggq~ 102 (228)
T TIGR03294 33 IADLVYCQTLADAR-EIPEMDVALVEGSVCLQDEHSLEEIKELREKAKVVVAL---------GACAATGNFTRYSRGGQQ 102 (228)
T ss_pred HHEEEECHHHCCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEE---------ECCCCCCCCCEECCCCCC
T ss_conf 23247440111576-58885189995501578677799999999868889996---------412102882000258877
Q ss_pred --CCCCCCCCHHCCCCCEEEE-ECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCHHHHHHHHHHHHH
Q ss_conf --2663211000047851898-6489804411245104799988754210346663110--1112207776544668888
Q gi|254781044|r 96 --NTLACVKDMKDIKGAIAVY-PLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPA--KELLQSHEDRQKIDGLYEC 170 (259)
Q Consensus 96 --~~LAC~t~~~~~~~~i~ie-Pl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~--~e~~qsped~~~~~~~~~C 170 (259)
T Consensus 103 ~~P~~e~~---~Pi~~vV~VD~~iPGCPP~pe~I~~--~~~all~G~~~yl~p~~~~~~~~~~~c-gcdl~~~vin~~LC 176 (228)
T TIGR03294 103 AQPQHESF---VPITDVIDVDLAIPGCPPSPEAIRN--VCVALLNGDMEYLQPLAALAEEGTEAC-GCDLMTKVVNQGLC 176 (228)
T ss_pred CCCCCCCC---CCHHHEEEECEECCCCCCCHHHHHH--HHHHHHCCCCHHCCCHHHHHHCCCCCC-CCHHHHHCCCCCCC
T ss_conf 88875552---5601447616782799849899999--999997399221254799972386345-75037752463216
Q ss_pred HHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHH
Q ss_conf 873131322820010222101147889998851688843138899962286652767664734551899788899
Q gi|254781044|r 171 VMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAK 245 (259)
Q Consensus 171 I~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~ 245 (259)
T Consensus 177 ~GCg~Ca~~Cp~~AI~~----------------~~gkp--------~i~~----~~Ci~CG~C~~~CPr~~~p~~ 223 (228)
T TIGR03294 177 MGCGTCAAACPTRAIEM----------------EDGRP--------NVNR----DRCIKCGACYVQCPRAFWPEY 223 (228)
T ss_pred CCCHHHHHHCCCCCCEE----------------ECCCE--------EECH----HHCCCCCCCCCCCCCCCCCHH
T ss_conf 78157785488576256----------------53836--------7763----227767744121976428655