Query gi|254781044|ref|YP_003065457.1| succinate dehydrogenase iron-sulfur subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 259
No_of_seqs 173 out of 1596
Neff 5.9
Searched_HMMs 39220
Date Mon May 30 03:36:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781044.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05950 sdhB succinate dehydr 100.0 0 0 585.7 20.8 233 27-259 2-235 (235)
2 PRK12575 succinate dehydrogena 100.0 0 0 577.0 20.7 234 25-259 2-235 (235)
3 PRK12577 succinate dehydrogena 100.0 0 0 578.9 18.7 228 27-258 2-242 (330)
4 PRK12385 fumarate reductase ir 100.0 0 0 569.7 21.9 232 24-257 2-234 (243)
5 PRK13552 frdB fumarate reducta 100.0 0 0 565.6 21.6 233 25-259 2-240 (240)
6 PRK12576 succinate dehydrogena 100.0 0 0 566.8 20.5 229 25-258 1-235 (311)
7 COG0479 FrdB Succinate dehydro 100.0 0 0 553.4 18.7 230 26-259 1-232 (234)
8 PRK08640 sdhB succinate dehydr 100.0 0 0 538.2 20.5 232 25-259 1-241 (252)
9 PRK12386 fumarate reductase ir 100.0 0 0 528.4 20.0 228 25-258 2-235 (250)
10 PRK06259 succinate dehydrogena 100.0 0 0 522.7 19.4 222 26-259 2-224 (491)
11 KOG3049 consensus 100.0 0 0 461.9 15.1 237 20-256 39-280 (288)
12 PRK07570 succinate dehydrogena 100.0 0 0 443.7 18.1 224 27-259 2-245 (247)
13 TIGR00384 dhsB succinate dehyd 100.0 0 0 325.5 7.7 219 32-251 1-236 (236)
14 TIGR03290 CoB_CoM_SS_C CoB--Co 99.6 5.3E-16 1.3E-20 119.6 5.1 80 167-259 1-80 (144)
15 COG1150 HdrC Heterodisulfide r 99.6 2E-15 5.1E-20 116.1 6.3 81 166-259 37-117 (195)
16 TIGR00273 TIGR00273 iron-sulfu 99.5 9.4E-15 2.4E-19 111.9 3.7 181 55-259 165-380 (450)
17 PRK11274 glcF glycolate oxidas 99.4 1.8E-13 4.6E-18 103.9 5.8 85 165-256 20-104 (407)
18 COG1139 Uncharacterized conser 99.4 1.9E-13 4.7E-18 103.8 2.8 84 163-258 303-391 (459)
19 PRK11168 glpC sn-glycerol-3-ph 99.4 4E-13 1E-17 101.8 4.1 81 166-257 9-90 (400)
20 PRK08493 NADH dehydrogenase su 99.3 7.3E-13 1.9E-17 100.1 1.5 184 49-241 10-220 (819)
21 TIGR03379 glycerol3P_GlpC glyc 99.3 2.5E-12 6.4E-17 96.8 4.0 82 166-258 3-85 (397)
22 TIGR01945 rnfC electron transp 99.2 4.4E-12 1.1E-16 95.3 2.4 84 157-258 361-444 (444)
23 COG0247 GlpC Fe-S oxidoreducta 99.2 1E-11 2.6E-16 93.1 3.1 86 164-257 5-90 (388)
24 PRK05035 electron transport co 99.1 5.6E-11 1.4E-15 88.4 3.1 74 164-255 372-445 (725)
25 PRK07569 bidirectional hydroge 99.1 3.8E-11 9.6E-16 89.5 1.1 171 49-241 12-206 (236)
26 COG3383 Uncharacterized anaero 99.0 2.8E-11 7.2E-16 90.3 -0.7 168 47-241 14-208 (978)
27 PRK09129 NADH dehydrogenase su 98.8 1.2E-09 3.2E-14 80.1 1.4 169 49-241 10-200 (777)
28 PRK07860 NADH dehydrogenase su 98.8 1.4E-09 3.4E-14 79.9 0.5 183 23-241 12-218 (809)
29 PRK08166 NADH dehydrogenase su 98.7 2.2E-09 5.5E-14 78.6 1.0 168 49-241 10-205 (858)
30 PRK09130 NADH dehydrogenase su 98.6 1.3E-08 3.3E-13 73.7 2.0 169 49-241 10-201 (680)
31 COG4656 RnfC Predicted NADH:ub 98.6 4.4E-08 1.1E-12 70.5 4.7 71 169-257 366-436 (529)
32 COG1034 NuoG NADH dehydrogenas 98.5 5.9E-08 1.5E-12 69.7 3.1 159 49-241 10-200 (693)
33 PRK00941 acetyl-CoA decarbonyl 98.4 2.5E-07 6.4E-12 65.8 4.7 77 161-256 395-471 (779)
34 cd01916 ACS_1 Acetyl-CoA synth 98.4 2.9E-07 7.3E-12 65.4 4.7 78 160-256 357-434 (731)
35 COG1152 CdhA CO dehydrogenase/ 98.4 3.5E-07 9E-12 64.9 4.3 81 157-256 389-469 (772)
36 cd00207 fer2 2Fe-2S iron-sulfu 98.3 4.8E-07 1.2E-11 64.0 3.3 59 46-114 8-84 (84)
37 TIGR00314 cdhA CO dehydrogenas 98.3 6.3E-07 1.6E-11 63.3 3.3 79 160-256 400-479 (795)
38 PRK09908 xanthine dehydrogenas 98.2 2E-06 5.1E-11 60.2 4.8 65 47-117 17-83 (159)
39 PRK11433 putative xanthine deh 98.2 6.3E-06 1.6E-10 57.1 6.8 77 25-117 49-127 (217)
40 TIGR03193 4hydroxCoAred 4-hydr 98.1 3.7E-06 9.3E-11 58.6 4.5 66 47-117 10-77 (148)
41 TIGR03198 pucE xanthine dehydr 98.0 4.8E-06 1.2E-10 57.8 3.7 66 47-117 12-79 (151)
42 PRK05352 Na(+)-translocating N 97.9 8E-06 2E-10 56.5 3.0 73 167-257 373-447 (448)
43 TIGR02936 fdxN_nitrog ferredox 97.8 2.9E-06 7.3E-11 59.2 -0.3 65 166-241 19-91 (96)
44 CHL00134 petF ferredoxin; Vali 97.8 3.7E-05 9.4E-10 52.3 4.8 43 47-96 16-59 (99)
45 PRK05713 hypothetical protein; 97.7 2.7E-05 6.8E-10 53.2 3.4 59 47-115 8-84 (312)
46 PRK12387 formate hydrogenlyase 97.7 3.6E-06 9.3E-11 58.6 -1.2 59 165-245 35-94 (178)
47 COG1453 Predicted oxidoreducta 97.7 9E-05 2.3E-09 49.9 5.8 81 169-258 294-384 (391)
48 CHL00014 ndhI NADH dehydrogena 97.7 6.1E-06 1.6E-10 57.2 -0.5 60 165-241 59-118 (173)
49 COG1143 NuoI Formate hydrogenl 97.7 6.2E-06 1.6E-10 57.1 -0.7 56 167-241 54-111 (172)
50 COG2080 CoxS Aerobic-type carb 97.6 6.1E-05 1.6E-09 51.0 4.1 67 46-118 11-80 (156)
51 PRK05888 NADH dehydrogenase su 97.6 5.3E-06 1.4E-10 57.6 -1.8 57 167-241 57-113 (172)
52 TIGR01971 NuoI NADH-quinone ox 97.6 5.3E-06 1.4E-10 57.6 -1.8 62 166-240 42-104 (129)
53 PRK11872 antC anthranilate dio 97.6 6E-05 1.5E-09 51.0 3.5 53 47-106 14-86 (340)
54 TIGR02163 napH_ ferredoxin-typ 97.6 1.1E-05 2.8E-10 55.6 -0.5 58 165-241 201-258 (263)
55 TIGR02176 pyruv_ox_red pyruvat 97.6 5.1E-06 1.3E-10 57.7 -2.2 68 165-240 696-770 (1194)
56 PRK09477 napH quinol dehydroge 97.5 1.1E-05 2.9E-10 55.5 -0.9 54 165-241 221-274 (287)
57 PRK08222 hydrogenase 4 subunit 97.5 9.9E-06 2.5E-10 55.9 -1.3 58 165-244 35-93 (181)
58 PRK12778 putative bifunctional 97.5 6.9E-05 1.8E-09 50.7 2.6 165 73-257 209-422 (760)
59 TIGR02745 ccoG_rdxA_fixG cytoc 97.4 2.5E-05 6.2E-10 53.4 -0.8 20 224-243 242-261 (474)
60 PRK13795 hypothetical protein; 97.4 3.1E-05 8E-10 52.8 -0.4 51 164-240 571-621 (630)
61 PRK07609 CDP-6-deoxy-delta-3,4 97.3 0.00018 4.5E-09 48.1 3.0 57 46-114 12-88 (337)
62 PRK08348 NADH-plastoquinone ox 97.3 2.4E-05 6.1E-10 53.5 -1.6 50 165-240 39-88 (111)
63 PRK12775 putative trifunctiona 97.3 0.00038 9.8E-09 46.0 4.4 163 80-256 217-416 (993)
64 TIGR03313 Se_sel_red_Mo probab 97.3 0.00047 1.2E-08 45.5 4.7 66 47-118 7-75 (951)
65 PTZ00038 ferredoxin; Provision 97.2 0.00077 2E-08 44.2 5.7 56 27-96 74-130 (172)
66 TIGR03311 Se_dep_Molyb_1 selen 97.2 0.00031 7.8E-09 46.6 3.6 58 55-116 14-73 (848)
67 PRK10713 2Fe-2S ferredoxin Yfa 97.2 0.00031 7.8E-09 46.6 3.1 42 47-96 12-54 (84)
68 TIGR02910 sulfite_red_A sulfit 97.1 7.1E-05 1.8E-09 50.6 -0.8 87 168-256 231-344 (346)
69 TIGR02494 PFLE_PFLC glycyl-rad 97.1 9.1E-05 2.3E-09 49.9 -0.4 60 161-240 41-101 (305)
70 PRK05113 electron transport co 96.9 9.5E-05 2.4E-09 49.8 -1.5 48 167-241 112-159 (184)
71 PRK09623 vorD 2-ketoisovalerat 96.9 0.00021 5.3E-09 47.7 0.1 49 165-240 48-96 (105)
72 PRK09624 porD pyuvate ferredox 96.9 0.00022 5.7E-09 47.5 0.1 49 165-240 48-96 (105)
73 PRK10684 HCP oxidoreductase, N 96.9 0.00058 1.5E-08 44.9 2.2 13 189-201 207-220 (335)
74 PRK09326 F420H2 dehydrogenase 96.9 0.00021 5.3E-09 47.7 -0.1 18 165-182 9-26 (346)
75 pfam00111 Fer2 2Fe-2S iron-sul 96.9 0.00057 1.5E-08 45.0 2.1 39 48-93 8-47 (78)
76 KOG3256 consensus 96.8 0.00022 5.7E-09 47.5 -0.2 59 165-241 108-166 (212)
77 COG0633 Fdx Ferredoxin [Energy 96.8 0.0011 2.7E-08 43.3 3.2 35 54-94 20-55 (102)
78 TIGR02912 sulfite_red_C sulfit 96.8 0.00022 5.5E-09 47.6 -0.6 54 162-240 169-222 (323)
79 TIGR03294 FrhG coenzyme F420 h 96.8 0.0027 7E-08 40.7 5.0 172 30-245 33-223 (228)
80 PRK09800 putative selenate red 96.7 0.00091 2.3E-08 43.7 2.3 45 74-118 4-51 (928)
81 PRK08318 dihydropyrimidine deh 96.7 0.00013 3.2E-09 49.0 -2.3 52 166-240 340-391 (413)
82 PRK10194 ferredoxin-type prote 96.7 0.00035 8.9E-09 46.3 -0.1 15 226-240 140-154 (164)
83 PRK09626 oorD 2-oxoglutarate-a 96.7 0.0002 5.1E-09 47.8 -1.4 63 158-240 6-68 (103)
84 TIGR03048 PS_I_psaC photosyste 96.7 0.0004 1E-08 45.9 0.1 54 168-241 8-61 (80)
85 PRK09898 hypothetical protein; 96.7 0.00065 1.7E-08 44.6 1.2 49 163-241 149-197 (208)
86 PRK12814 putative NADPH-depend 96.6 0.0024 6E-08 41.1 3.9 15 225-239 616-630 (652)
87 TIGR00402 napF ferredoxin-type 96.6 0.00031 7.8E-09 46.6 -0.7 50 167-242 38-88 (161)
88 PRK13984 putative oxidoreducta 96.6 0.00044 1.1E-08 45.7 -0.1 81 162-257 179-265 (604)
89 PRK09476 napG quinol dehydroge 96.6 0.00048 1.2E-08 45.4 0.0 16 226-241 185-200 (254)
90 CHL00065 psaC photosystem I su 96.5 0.00061 1.6E-08 44.8 0.2 54 168-241 9-62 (81)
91 TIGR00403 ndhI NADH-plastoquin 96.5 0.00048 1.2E-08 45.5 -0.6 61 164-241 59-119 (187)
92 PRK02651 photosystem I subunit 96.4 0.00073 1.9E-08 44.3 -0.0 54 168-241 9-62 (81)
93 PRK10330 electron transport pr 96.4 0.00061 1.6E-08 44.8 -0.5 62 165-242 84-152 (181)
94 PRK10882 hydrogenase 2 protein 96.3 0.0018 4.5E-08 41.9 1.7 74 156-257 132-222 (329)
95 TIGR02745 ccoG_rdxA_fixG cytoc 96.3 0.00086 2.2E-08 43.8 -0.1 40 165-237 240-279 (474)
96 PRK06991 ferredoxin; Provision 96.3 0.00053 1.3E-08 45.2 -1.2 48 167-241 84-131 (274)
97 COG0437 HybA Fe-S-cluster-cont 96.2 0.0013 3.3E-08 42.7 0.4 57 165-252 97-163 (203)
98 TIGR01945 rnfC electron transp 96.1 0.00084 2.1E-08 43.9 -0.8 28 224-251 371-398 (444)
99 TIGR02160 PA_CoA_Oxy5 phenylac 96.1 0.0024 6.1E-08 41.1 1.6 91 14-130 268-371 (371)
100 PRK06273 ferredoxin; Provision 96.1 0.00056 1.4E-08 45.0 -1.7 93 129-239 11-107 (163)
101 PRK08764 ferredoxin; Provision 96.1 0.00075 1.9E-08 44.2 -1.2 47 168-241 86-132 (138)
102 PRK07118 ferredoxin; Validated 96.0 0.00059 1.5E-08 44.9 -2.0 16 226-241 243-258 (276)
103 PRK13984 putative oxidoreducta 96.0 0.0029 7.3E-08 40.6 1.4 28 225-252 185-212 (604)
104 TIGR01944 rnfB electron transp 96.0 0.0016 4E-08 42.3 0.0 46 167-240 124-170 (213)
105 PRK12771 putative glutamate sy 96.0 0.0024 6.1E-08 41.1 0.9 16 226-241 538-553 (560)
106 PRK09625 porD pyruvate flavodo 95.9 0.0027 7E-08 40.7 0.8 52 164-242 52-103 (130)
107 COG1149 MinD superfamily P-loo 95.8 0.0034 8.8E-08 40.1 1.1 44 167-240 68-114 (284)
108 PRK07118 ferredoxin; Validated 95.6 0.0022 5.7E-08 41.3 -0.5 65 166-242 166-231 (276)
109 COG2768 Uncharacterized Fe-S c 95.6 0.0044 1.1E-07 39.4 1.0 46 167-241 192-237 (354)
110 TIGR02700 flavo_MJ0208 archaeo 95.5 0.0035 8.8E-08 40.1 0.2 101 109-240 87-195 (237)
111 TIGR03336 IOR_alpha indolepyru 95.4 0.0052 1.3E-07 39.0 1.0 45 165-240 547-593 (595)
112 PRK10882 hydrogenase 2 protein 95.3 0.0011 2.8E-08 43.2 -2.8 17 226-242 145-161 (329)
113 COG4231 Indolepyruvate ferredo 95.3 0.0029 7.5E-08 40.5 -0.7 51 163-241 572-624 (640)
114 PRK12769 putative oxidoreducta 95.1 0.0034 8.6E-08 40.2 -0.8 83 162-257 219-310 (654)
115 TIGR00314 cdhA CO dehydrogenas 95.1 0.022 5.6E-07 35.1 3.4 164 57-252 251-435 (795)
116 COG1145 NapF Ferredoxin [Energ 95.1 0.0062 1.6E-07 38.5 0.5 52 167-241 28-79 (99)
117 TIGR00397 mauM_napG MauM/NapG 94.6 0.01 2.5E-07 37.3 0.6 29 154-182 39-67 (213)
118 PRK05802 hypothetical protein; 94.3 0.011 2.8E-07 37.0 0.2 19 116-134 186-213 (328)
119 TIGR02963 xanthine_xdhA xanthi 94.2 0.097 2.5E-06 31.1 4.8 60 54-117 16-90 (515)
120 COG1148 HdrA Heterodisulfide r 94.1 0.017 4.3E-07 35.8 0.8 46 166-242 559-604 (622)
121 COG1146 Ferredoxin [Energy pro 93.9 0.0092 2.4E-07 37.5 -0.9 50 167-240 7-56 (68)
122 PRK05035 electron transport co 93.9 0.034 8.6E-07 34.0 2.0 28 225-252 376-403 (725)
123 PRK10194 ferredoxin-type prote 93.7 0.016 4E-07 36.0 -0.0 55 162-241 29-83 (164)
124 COG4656 RnfC Predicted NADH:ub 93.6 0.036 9.2E-07 33.8 1.8 24 160-183 396-419 (529)
125 COG1148 HdrA Heterodisulfide r 93.5 0.015 3.9E-07 36.1 -0.4 68 163-241 220-287 (622)
126 PRK09898 hypothetical protein; 93.4 0.0064 1.6E-07 38.5 -2.4 18 226-243 155-172 (208)
127 TIGR02484 CitB CitB domain pro 93.1 0.054 1.4E-06 32.7 2.0 73 160-257 8-86 (392)
128 TIGR03149 cyt_nit_nrfC cytochr 93.1 0.045 1.1E-06 33.2 1.6 20 163-182 120-139 (225)
129 TIGR01582 FDH-beta formate deh 92.9 0.028 7.1E-07 34.5 0.2 14 168-181 134-147 (293)
130 PRK09476 napG quinol dehydroge 92.8 0.025 6.4E-07 34.8 -0.1 23 161-183 52-74 (254)
131 TIGR03149 cyt_nit_nrfC cytochr 92.2 0.0056 1.4E-07 38.8 -4.1 17 168-184 92-110 (225)
132 PRK12810 gltD glutamate syntha 91.9 0.079 2E-06 31.7 1.5 12 243-254 448-459 (472)
133 PTZ00305 NADH:ubiquinone oxido 91.8 0.044 1.1E-06 33.2 0.1 58 53-114 81-141 (297)
134 COG2878 Predicted NADH:ubiquin 91.7 0.078 2E-06 31.7 1.4 51 164-241 111-161 (198)
135 COG1150 HdrC Heterodisulfide r 91.6 0.13 3.3E-06 30.3 2.3 21 162-182 77-97 (195)
136 KOG0430 consensus 91.5 0.41 1E-05 27.2 4.9 68 47-118 11-89 (1257)
137 PRK12769 putative oxidoreducta 91.4 0.17 4.3E-06 29.6 2.7 29 225-253 225-256 (654)
138 cd06219 DHOD_e_trans_like1 FAD 91.3 0.069 1.8E-06 32.0 0.7 10 191-200 186-195 (248)
139 COG0493 GltD NADPH-dependent g 91.3 0.26 6.7E-06 28.4 3.7 10 74-83 188-197 (457)
140 PRK12809 putative oxidoreducta 91.2 0.14 3.7E-06 30.1 2.3 83 162-257 202-293 (639)
141 cd01916 ACS_1 Acetyl-CoA synth 91.2 0.14 3.7E-06 30.1 2.3 27 225-251 365-391 (731)
142 COG2221 DsrA Dissimilatory sul 91.1 0.032 8.2E-07 34.1 -1.1 52 165-244 169-220 (317)
143 PRK09477 napH quinol dehydroge 91.1 0.086 2.2E-06 31.4 1.0 23 225-247 224-246 (287)
144 PRK00941 acetyl-CoA decarbonyl 91.0 0.16 4E-06 29.8 2.2 27 225-251 402-428 (779)
145 cd06192 DHOD_e_trans_like FAD/ 90.8 0.074 1.9E-06 31.9 0.5 10 191-200 184-193 (243)
146 TIGR00276 TIGR00276 iron-sulfu 90.1 0.039 1E-06 33.6 -1.5 66 169-240 173-238 (297)
147 PRK11749 putative oxidoreducta 90.0 0.18 4.7E-06 29.4 2.0 11 244-254 437-447 (460)
148 COG1142 HycB Fe-S-cluster-cont 89.9 0.072 1.8E-06 31.9 -0.2 21 162-182 76-96 (165)
149 COG1941 FrhG Coenzyme F420-red 89.8 0.089 2.3E-06 31.3 0.2 62 160-252 182-243 (247)
150 PRK12831 putative oxidoreducta 89.2 0.24 6.1E-06 28.7 2.0 37 44-83 177-215 (464)
151 COG1035 FrhB Coenzyme F420-red 89.2 0.15 3.8E-06 30.0 0.9 13 171-183 239-251 (332)
152 TIGR02066 dsrB sulfite reducta 88.8 0.046 1.2E-06 33.2 -1.9 22 165-186 236-257 (366)
153 COG1143 NuoI Formate hydrogenl 88.7 0.091 2.3E-06 31.3 -0.4 20 166-185 93-112 (172)
154 COG0437 HybA Fe-S-cluster-cont 88.6 0.016 4.1E-07 36.0 -4.4 18 226-243 101-118 (203)
155 CHL00014 ndhI NADH dehydrogena 88.5 0.095 2.4E-06 31.2 -0.4 20 165-184 99-118 (173)
156 PRK08348 NADH-plastoquinone ox 88.5 0.049 1.3E-06 32.9 -1.9 17 168-184 73-89 (111)
157 TIGR02512 Fe_only_hydrog hydro 88.1 0.14 3.5E-06 30.2 0.2 73 166-252 5-78 (380)
158 COG1600 Uncharacterized Fe-S p 88.1 0.52 1.3E-05 26.6 3.2 65 168-240 185-249 (337)
159 pfam00037 Fer4 4Fe-4S binding 88.0 0.15 3.8E-06 29.9 0.3 18 166-183 4-21 (26)
160 PRK00054 dihydroorotate dehydr 87.9 0.16 4.2E-06 29.7 0.5 40 191-231 185-224 (248)
161 TIGR01582 FDH-beta formate deh 87.9 0.15 3.7E-06 30.0 0.2 24 159-182 22-45 (293)
162 COG4630 XdhA Xanthine dehydrog 87.8 0.59 1.5E-05 26.3 3.3 68 54-126 24-108 (493)
163 PRK06222 ferredoxin-NADP(+) re 87.7 0.21 5.4E-06 29.0 1.0 65 191-257 187-264 (281)
164 TIGR02163 napH_ ferredoxin-typ 87.6 0.11 2.8E-06 30.8 -0.6 15 226-240 205-219 (263)
165 TIGR02176 pyruv_ox_red pyruvat 87.5 0.13 3.4E-06 30.3 -0.2 15 169-183 756-770 (1194)
166 COG1453 Predicted oxidoreducta 87.4 0.68 1.7E-05 25.9 3.4 28 223-253 292-319 (391)
167 COG1152 CdhA CO dehydrogenase/ 87.2 0.32 8.2E-06 27.9 1.6 27 225-251 400-426 (772)
168 PRK10330 electron transport pr 87.2 0.25 6.3E-06 28.6 1.0 46 169-242 57-104 (181)
169 TIGR02912 sulfite_red_C sulfit 86.7 0.083 2.1E-06 31.5 -1.6 25 161-185 200-224 (323)
170 KOG3256 consensus 86.7 0.1 2.6E-06 31.0 -1.1 20 165-184 147-166 (212)
171 PRK12387 formate hydrogenlyase 86.3 0.15 3.8E-06 30.0 -0.5 55 166-235 71-125 (178)
172 PRK09623 vorD 2-ketoisovalerat 86.3 0.17 4.4E-06 29.6 -0.2 17 166-182 79-95 (105)
173 TIGR03048 PS_I_psaC photosyste 86.2 0.18 4.6E-06 29.5 -0.1 28 166-193 43-70 (80)
174 TIGR02486 RDH reductive dehalo 86.0 0.17 4.4E-06 29.6 -0.3 114 109-255 184-318 (338)
175 TIGR01971 NuoI NADH-quinone ox 85.9 0.13 3.2E-06 30.4 -1.0 19 166-184 87-105 (129)
176 PRK12809 putative oxidoreducta 85.7 0.42 1.1E-05 27.2 1.6 28 225-252 208-238 (639)
177 COG1144 Pyruvate:ferredoxin ox 85.3 0.12 3E-06 30.6 -1.4 49 165-239 32-80 (91)
178 COG0479 FrdB Succinate dehydro 84.8 0.49 1.2E-05 26.8 1.5 34 223-256 140-178 (234)
179 TIGR02494 PFLE_PFLC glycyl-rad 84.6 0.37 9.3E-06 27.5 0.8 10 89-98 102-111 (305)
180 TIGR03290 CoB_CoM_SS_C CoB--Co 84.1 0.51 1.3E-05 26.6 1.4 19 164-182 42-60 (144)
181 PRK05888 NADH dehydrogenase su 83.9 0.54 1.4E-05 26.5 1.5 20 165-184 94-113 (172)
182 PRK12771 putative glutamate sy 83.9 0.27 6.9E-06 28.3 -0.1 14 227-240 508-521 (560)
183 TIGR02936 fdxN_nitrog ferredox 83.9 0.18 4.5E-06 29.5 -1.0 19 164-182 71-89 (96)
184 PRK08222 hydrogenase 4 subunit 83.8 0.2 5.2E-06 29.1 -0.7 19 166-184 71-89 (181)
185 PRK09624 porD pyuvate ferredox 83.6 0.28 7.1E-06 28.3 -0.1 21 164-184 77-97 (105)
186 PRK13795 hypothetical protein; 83.6 0.27 6.8E-06 28.4 -0.2 18 224-241 574-591 (630)
187 pfam00037 Fer4 4Fe-4S binding 82.8 0.44 1.1E-05 27.1 0.7 16 226-241 7-22 (26)
188 PRK12778 putative bifunctional 82.5 0.71 1.8E-05 25.8 1.6 29 225-253 337-367 (760)
189 COG3383 Uncharacterized anaero 82.3 0.19 4.8E-06 29.3 -1.4 33 163-195 187-219 (978)
190 KOG2282 consensus 82.3 3.8 9.8E-05 21.2 5.3 57 43-103 35-96 (708)
191 cd06218 DHOD_e_trans FAD/NAD b 82.0 0.5 1.3E-05 26.7 0.7 11 191-201 186-196 (246)
192 PRK09626 oorD 2-oxoglutarate-a 81.8 0.33 8.4E-06 27.8 -0.3 20 165-184 50-69 (103)
193 PRK12775 putative trifunctiona 81.7 0.87 2.2E-05 25.2 1.8 29 225-253 331-361 (993)
194 TIGR02179 PorD_KorD 2-oxoacid: 81.6 0.34 8.6E-06 27.8 -0.3 51 166-240 23-74 (84)
195 PRK05352 Na(+)-translocating N 81.6 0.8 2E-05 25.4 1.6 29 224-252 373-401 (448)
196 PRK02651 photosystem I subunit 80.7 0.38 9.8E-06 27.4 -0.3 29 165-193 43-71 (81)
197 TIGR02060 aprB adenylylsulfate 80.4 0.49 1.2E-05 26.8 0.2 50 167-241 7-61 (138)
198 PRK06259 succinate dehydrogena 80.2 0.45 1.1E-05 27.0 -0.1 21 162-182 183-203 (491)
199 TIGR03294 FrhG coenzyme F420 h 79.9 0.43 1.1E-05 27.1 -0.2 48 186-241 143-190 (228)
200 PRK08318 dihydropyrimidine deh 79.4 0.38 9.6E-06 27.5 -0.7 12 226-237 343-354 (413)
201 TIGR02700 flavo_MJ0208 archaeo 78.7 0.38 9.7E-06 27.4 -0.8 22 164-185 176-197 (237)
202 TIGR00273 TIGR00273 iron-sulfu 78.7 0.59 1.5E-05 26.2 0.2 16 168-183 346-361 (450)
203 CHL00065 psaC photosystem I su 78.5 0.52 1.3E-05 26.6 -0.2 18 167-184 45-62 (81)
204 TIGR03287 methan_mark_16 putat 78.4 0.84 2.1E-05 25.3 0.9 13 226-238 331-343 (391)
205 PRK09625 porD pyruvate flavodo 77.3 0.74 1.9E-05 25.6 0.3 19 165-183 83-101 (130)
206 TIGR03478 DMSO_red_II_bet DMSO 77.2 0.43 1.1E-05 27.1 -0.9 20 163-182 157-176 (321)
207 TIGR02910 sulfite_red_A sulfit 75.8 0.92 2.3E-05 25.1 0.5 14 226-239 232-245 (346)
208 COG1141 Fer Ferredoxin [Energy 75.5 1.1 2.7E-05 24.7 0.7 22 166-187 6-28 (68)
209 TIGR03478 DMSO_red_II_bet DMSO 75.5 0.57 1.4E-05 26.4 -0.7 54 163-242 124-179 (321)
210 PRK09853 putative selenate red 75.5 0.52 1.3E-05 26.6 -0.8 60 163-243 892-955 (1032)
211 PRK07569 bidirectional hydroge 75.5 0.48 1.2E-05 26.8 -1.0 21 165-185 187-207 (236)
212 pfam10418 DHODB_Fe-S_bind Iron 75.4 1.3 3.2E-05 24.2 1.1 25 77-101 3-27 (38)
213 TIGR03315 Se_ygfK putative sel 75.0 0.5 1.3E-05 26.7 -1.0 58 165-243 878-939 (1012)
214 PRK08345 cytochrome-c3 hydroge 74.9 0.99 2.5E-05 24.9 0.4 40 191-231 221-263 (292)
215 PRK08493 NADH dehydrogenase su 73.8 0.85 2.2E-05 25.3 -0.1 21 167-187 203-223 (819)
216 PRK12385 fumarate reductase ir 73.6 0.73 1.9E-05 25.7 -0.5 30 165-201 199-228 (243)
217 PRK05464 Na(+)-translocating N 73.2 3 7.7E-05 21.8 2.6 64 26-106 33-117 (408)
218 PRK05950 sdhB succinate dehydr 71.6 0.92 2.3E-05 25.1 -0.4 17 166-182 199-215 (235)
219 COG0348 NapH Polyferredoxin [E 70.5 0.76 1.9E-05 25.6 -1.0 16 169-184 246-261 (386)
220 COG1245 Predicted ATPase, RNas 69.4 1.3 3.3E-05 24.2 -0.0 19 90-108 370-388 (591)
221 TIGR01950 SoxR redox-sensitive 67.5 1.1 2.9E-05 24.5 -0.6 21 165-185 104-125 (142)
222 TIGR02007 fdx_isc ferredoxin, 67.5 7.6 0.00019 19.4 3.6 57 49-114 17-98 (110)
223 cd06221 sulfite_reductase_like 67.2 1.8 4.6E-05 23.3 0.4 13 191-203 196-208 (253)
224 COG2440 FixX Ferredoxin-like p 66.7 1.5 3.9E-05 23.7 -0.1 47 167-240 32-80 (99)
225 TIGR01316 gltA glutamate synth 66.4 1.9 4.8E-05 23.2 0.3 82 43-138 111-204 (462)
226 KOG3309 consensus 66.1 11 0.00028 18.4 6.9 55 27-93 41-95 (159)
227 pfam06542 PHA-1 Regulator prot 63.9 12 0.00031 18.1 4.6 107 60-184 7-133 (381)
228 TIGR02008 fdx_plant ferredoxin 62.7 3.2 8.2E-05 21.7 0.9 36 71-106 30-66 (96)
229 TIGR02951 DMSO_dmsB dimethylsu 60.7 1.7 4.2E-05 23.5 -0.8 17 226-242 97-113 (162)
230 pfam08882 Acetone_carb_G Aceto 57.3 6.1 0.00016 20.0 1.6 24 114-137 82-105 (106)
231 COG3894 Uncharacterized metal- 56.4 12 0.00031 18.1 3.0 46 54-105 15-79 (614)
232 TIGR01941 nqrF NADH:ubiquinone 55.2 17 0.00043 17.2 5.2 90 28-134 32-156 (425)
233 pfam11470 TUG GLUT4 regulating 46.8 18 0.00045 17.1 2.6 24 45-69 6-29 (65)
234 pfam02626 AHS2 Allophanate hyd 46.5 12 0.00032 18.0 1.8 45 71-115 37-82 (270)
235 TIGR02969 mam_aldehyde_ox alde 45.9 13 0.00033 17.9 1.8 64 48-116 13-88 (1334)
236 PRK13669 hypothetical protein; 43.5 14 0.00036 17.7 1.7 31 68-99 23-58 (78)
237 TIGR01318 gltD_gamma_fam gluta 43.2 14 0.00036 17.7 1.7 29 162-191 35-66 (480)
238 COG1984 DUR1 Allophanate hydro 42.5 19 0.00049 16.9 2.2 46 72-117 59-105 (314)
239 smart00797 AHS2 Allophanate hy 41.4 17 0.00042 17.3 1.8 45 71-115 37-82 (280)
240 pfam07293 DUF1450 Protein of u 39.2 18 0.00047 17.0 1.7 38 59-99 16-58 (78)
241 TIGR01317 GOGAT_sm_gam glutama 39.0 16 0.00042 17.3 1.4 83 165-258 40-135 (517)
242 COG1140 NarY Nitrate reductase 37.9 9.4 0.00024 18.8 0.1 17 167-183 180-198 (513)
243 PRK12566 glycine dehydrogenase 36.5 16 0.00041 17.4 1.1 36 58-95 480-515 (954)
244 PRK05367 glycine dehydrogenase 35.8 21 0.00053 16.7 1.5 36 58-95 479-514 (955)
245 TIGR01958 nuoE_fam NADH-quinon 34.3 20 0.00052 16.7 1.3 19 57-75 18-36 (153)
246 KOG0063 consensus 33.2 12 0.00029 18.2 -0.1 43 199-241 499-546 (592)
247 TIGR00280 L37a ribosomal prote 31.5 20 0.0005 16.8 0.9 14 220-233 50-63 (92)
248 COG4647 AcxC Acetone carboxyla 31.2 25 0.00063 16.2 1.3 24 114-137 134-157 (165)
249 PRK08364 sulfur carrier protei 29.9 24 0.00062 16.2 1.1 49 48-116 13-61 (67)
250 TIGR02479 FliA_WhiG RNA polyme 29.1 24 0.0006 16.3 0.9 29 34-66 43-71 (227)
251 TIGR01973 NuoG NADH-quinone ox 27.1 48 0.0012 14.4 3.0 153 47-241 5-213 (715)
252 TIGR02980 SigBFG RNA polymeras 26.2 15 0.00038 17.6 -0.5 18 32-51 46-63 (229)
253 TIGR02392 rpoH_proteo alternat 26.2 9.8 0.00025 18.7 -1.5 26 31-71 76-101 (279)
254 TIGR01660 narH nitrate reducta 26.1 14 0.00037 17.6 -0.6 106 110-241 110-231 (495)
255 PRK12779 putative bifunctional 25.9 28 0.0007 15.9 0.8 40 190-231 852-892 (944)
256 TIGR01408 Ube1 ubiquitin-activ 25.0 52 0.0013 14.2 3.4 52 44-102 933-986 (1033)
257 cd05567 PTS_IIB_mannitol PTS_I 24.9 34 0.00087 15.3 1.1 58 78-141 5-64 (87)
258 KOG3993 consensus 23.2 16 0.0004 17.4 -0.9 13 220-232 352-364 (500)
259 cd03557 L-arabinose_isomerase 22.5 58 0.0015 13.9 4.0 102 40-148 321-441 (484)
260 TIGR02997 Sig70-cyanoRpoD RNA 21.6 33 0.00085 15.4 0.5 25 55-79 133-164 (336)
261 pfam12225 MTHFR_C Methylene-te 21.3 35 0.00089 15.3 0.6 10 85-94 26-35 (98)
262 TIGR00483 EF-1_alpha translati 21.1 49 0.0012 14.4 1.3 31 38-68 203-236 (445)
263 PRK03976 rpl37ae 50S ribosomal 20.1 33 0.00085 15.4 0.3 12 221-232 51-62 (90)
No 1
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=0 Score=585.67 Aligned_cols=233 Identities=65% Similarity=1.221 Sum_probs=225.6
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHC
Q ss_conf 79999986368888887368998642678811678999999732876388404567735443031436126632110000
Q gi|254781044|r 27 LKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKD 106 (259)
Q Consensus 27 ~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~ 106 (259)
.+||+||||||+++.+||||+|+|++.+++|||||+|++||+++||||+||+|||+||||||||+|||+|+|||+|+|++
T Consensus 2 ~v~l~I~R~~p~~~~~~~~~~y~v~~~~~~~tvLdaL~~Ik~~~D~slafr~sCr~giCGSCam~ING~~~LAC~t~v~~ 81 (235)
T PRK05950 2 KVTFKIYRYNPDKDANPRMQTYEVDVDDCGPMVLDALIKIKNEQDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISD 81 (235)
T ss_pred EEEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCEEEEHHH
T ss_conf 68999997189989997069999478999981999999998614997589717898878767678899412230117002
Q ss_pred CC-CCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEE
Q ss_conf 47-85189864898044112451047999887542103466631101112207776544668888873131322820010
Q gi|254781044|r 107 IK-GAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 107 ~~-~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~~~ 185 (259)
+. ++|+||||++||||||||||+++||+++++++||+.+..+.+++|.+|+|+++++++++++||+||+|+++||++..
T Consensus 82 ~~~~~I~iePl~~fpVikDLvVD~~~~~~~~~~v~p~l~~~~~~~~~e~~~~pe~~~~~~~~~~CI~Cg~C~saCp~~~~ 161 (235)
T PRK05950 82 LKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPPAKERLQSPEEREKLDGLYECILCACCSTSCPSFWW 161 (235)
T ss_pred CCCCCEEEECCCCCCCCCCCEEECHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 48995899536569844540662499985201375376379999842233798899998868761412115744966502
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 22210114788999885168884313889996228665276766473455189978889999999999986129
Q gi|254781044|r 186 NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 (259)
Q Consensus 186 ~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rkl 259 (259)
+++.|+||++|+++|||+.|+||.+..+|++.+.+++|+|+|++|++|+++|||||+|+++|+.||++++++++
T Consensus 162 ~~~~flGP~al~~a~r~~~D~Rd~~~~eRl~~l~~~~G~~~C~~~~~C~~vCPK~I~p~~aI~~lkr~~~~~~~ 235 (235)
T PRK05950 162 NPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLERRV 235 (235)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 77566088999999875468765029999998607788107989587256287899989999999999997629
No 2
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=0 Score=577.01 Aligned_cols=234 Identities=50% Similarity=1.007 Sum_probs=225.5
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 60799999863688888873689986426788116789999997328763884045677354430314361266321100
Q gi|254781044|r 25 KNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDM 104 (259)
Q Consensus 25 ~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~ 104 (259)
+..+||+||||||+.|.+||||+|+|++.+.++||||+|++|| ++||||+||+|||+||||||||+|||+|+|||+|+|
T Consensus 2 ~~~~tl~I~R~~P~~d~~p~~~~y~v~~~~~~~tvLd~L~~ik-~~D~tLaFr~sCR~gICGSCam~ING~~~LAC~t~v 80 (235)
T PRK12575 2 ADTRILDIYRYDPDDGRAPRMQRYELAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGVCGSDAMNINGRNGLACVTSM 80 (235)
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHH-HCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEEH
T ss_conf 9727999983089999986068999586889871999999998-249983664578899787787588998665478786
Q ss_pred HCCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEE
Q ss_conf 00478518986489804411245104799988754210346663110111220777654466888887313132282001
Q gi|254781044|r 105 KDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 105 ~~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~~ 184 (259)
+++.++|+||||+|||||||||||+++||+++++++||+.+....+++|.+|+|+++++++++++||+||+|+++||++.
T Consensus 81 ~~~~~~i~IePl~~fpVIkDLVVD~~~~~~~~~~v~p~~~~~~~~~~~e~~~~p~~~~~~~~~~~CI~Cg~C~saCp~~~ 160 (235)
T PRK12575 81 QALPREIVLRPLPGLPVVRDLIVDMTSFFNQYHSVRPYLVNEGVPPERERLQTPQEREQLDGLYECILCACCSSACPSYW 160 (235)
T ss_pred HHCCCCEEEEECCCCCCCCCCEECCHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66578559998999962223266039999875522438614899885123379889998872887550333886646610
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 022210114788999885168884313889996228665276766473455189978889999999999986129
Q gi|254781044|r 185 WNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 (259)
Q Consensus 185 ~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rkl 259 (259)
.+++.|+||++|+++|||+.|+||+...+|++.+.+++|+|+|++|++|+++|||||+|+++|+.||+++++|+|
T Consensus 161 ~~~~~f~GP~al~~a~r~~~D~RD~~~~erl~~l~~~~g~~~C~~~~~C~~vCPK~I~p~~~I~~Lr~~~~~~~~ 235 (235)
T PRK12575 161 WNPDKFVGPAGLLQAYRFIVDSRDDASAARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARRAV 235 (235)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 085356086888877662158631459999998417898508988588246287899989999999999997309
No 3
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=0 Score=578.93 Aligned_cols=228 Identities=35% Similarity=0.673 Sum_probs=215.1
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHC
Q ss_conf 79999986368888887368998642678811678999999732876388404567735443031436126632110000
Q gi|254781044|r 27 LKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKD 106 (259)
Q Consensus 27 ~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~ 106 (259)
.++|+|+||+| +.+||||+|+|+++ +++||||+|++||+++||||+||+|||+||||||||+|||+++|||+|+|.+
T Consensus 2 ~v~~kI~R~~p--d~~p~~q~y~v~~~-~~~tvLdaL~~Ik~~~D~sLafR~sCr~giCGSCam~ING~~~LAC~t~v~d 78 (330)
T PRK12577 2 EVLFKILRQKQ--NSSPYVQTYTLEVD-PGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS 78 (330)
T ss_pred EEEEEEEECCC--CCCCEEEEEEEECC-CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCEEEEEEECCCHH
T ss_conf 68999981498--99975688997379-9987999999998623996354010478667756555888420133020055
Q ss_pred C-----------CCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 4-----------78518986489804411245104799988754210346663-11011122077765446688888731
Q gi|254781044|r 107 I-----------KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP-KPAKELLQSHEDRQKIDGLYECVMCA 174 (259)
Q Consensus 107 ~-----------~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~-~~~~e~~qsped~~~~~~~~~CI~CG 174 (259)
+ .++|+||||+|||||||||||+++||+++++++||+.+..+ .|++|++|+||++++++++++||+||
T Consensus 79 ~l~~~~~~~~~~~~~I~IePL~n~pVIkDLVVD~~~f~~k~~~vkP~l~~~~~~~p~~E~~qsPee~~k~~~~~~CIlCg 158 (330)
T PRK12577 79 ELARLSQSNSGVIPEITIAPLGNMPVIKDLVVDMSSFWQKLEAVDPYVSTAARQVPEREFLQTPEERSKLNQTGNCILCG 158 (330)
T ss_pred HHHHCCCCCCCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 54200123457788579986899961015621639999999860675447888898512368999999875667470106
Q ss_pred CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 313228200102221011478899988516888431388999622-8665276766473455189978889999999999
Q gi|254781044|r 175 CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLE-DPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMM 253 (259)
Q Consensus 175 ~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~-~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~ 253 (259)
+|+|+||++++|++ |+||++|++||||+.|+||++.++||+.+. +.+|+|+|++|++|++||||||+|+++|..||++
T Consensus 159 ~C~SaCp~~~~n~d-flGPaal~kA~Rf~~DsRD~~~~eRL~~~~~~~~GvW~C~~c~~C~~vCPK~I~P~~aI~~lr~~ 237 (330)
T PRK12577 159 ACYSECNAREVNPE-FVGPHALAKAQRLVADSRDTDTEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQE 237 (330)
T ss_pred CCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 31051877444877-63799999999871487767507789985378888652862274305096999999999999999
Q ss_pred HHHCC
Q ss_conf 98612
Q gi|254781044|r 254 LLDRK 258 (259)
Q Consensus 254 ~v~rk 258 (259)
+++++
T Consensus 238 ~~~~~ 242 (330)
T PRK12577 238 ILARK 242 (330)
T ss_pred HHHHC
T ss_conf 99834
No 4
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=0 Score=569.68 Aligned_cols=232 Identities=32% Similarity=0.607 Sum_probs=220.4
Q ss_pred CCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 86079999986368888887368998642678811678999999732876388404567735443031436126632110
Q gi|254781044|r 24 EKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKD 103 (259)
Q Consensus 24 ~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~ 103 (259)
+.+.+||+||||||++|.+||||+|+|+++ ++|||||+|++||+++||||+||+|||+||||||||+|||+|+|||+|+
T Consensus 2 em~~v~~~V~Ry~P~~d~~p~~~~y~v~~~-~~~tvLd~L~~Ik~~~D~sL~fr~sCr~giCGsCam~iNG~~~LAC~t~ 80 (243)
T PRK12385 2 EMKNLKIEVLRYNPETDTEPHSATYEVPYD-ETTSLLDALGYIKDNLDPDLSYRWSCRMAICGSCGMMVNNVPKLACKTF 80 (243)
T ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEECC-CCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEECCEEECCEEEE
T ss_conf 850899999985889999874489998579-9997999999998534998247557899977626689899640002541
Q ss_pred HHCCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf 0004785189864898044112451047999887542103466631-101112207776544668888873131322820
Q gi|254781044|r 104 MKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPK-PAKELLQSHEDRQKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 104 ~~~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~-~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~ 182 (259)
++++.++|+||||+|||||||||||++.||+++++++||+...... ++.+.+|+|+++++++++++||+||+|+|+||+
T Consensus 81 i~~~~~~i~iePl~~~pVikDLvVD~~~f~~k~~~v~p~l~~~~~~~~~~~~~~~p~~~~k~~~~~~CI~Cg~C~saCp~ 160 (243)
T PRK12385 81 LRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQ 160 (243)
T ss_pred HHHCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCC
T ss_conf 23268965997679996776778663999998661177220588898632345897899998601266552387642887
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 010222101147889998851688843138899962286652767664734551899788899999999999861
Q gi|254781044|r 183 YWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257 (259)
Q Consensus 183 ~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~r 257 (259)
+..|++ |+||++|.++|||+.||||..+.+|++.+.+++|+|+|++|++|+++|||||+|+.+|++||+++++.
T Consensus 161 ~~~~~~-flGPaal~~a~Rf~~D~RD~~~~eRl~~l~~~~Gv~~C~~~~~C~~vCPK~I~p~~aI~~lk~ea~k~ 234 (243)
T PRK12385 161 FGLNPE-FIGPAAITLAHRYNLDSRDHGKKERMAQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKD 234 (243)
T ss_pred CCCCCC-CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 566866-55999999999860497642368899973057981179885861372948989899999999999999
No 5
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=0 Score=565.57 Aligned_cols=233 Identities=29% Similarity=0.581 Sum_probs=216.4
Q ss_pred CCEEEEEEEEECCC-CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 60799999863688-88887368998642678811678999999732876388404567735443031436126632110
Q gi|254781044|r 25 KNLKEYRIYRWNPD-NKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKD 103 (259)
Q Consensus 25 ~~~~~~~i~R~~p~-~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~ 103 (259)
++.+||+|+||||+ .+.+||||+|+|+++ ++|||||+|++||+++||||+||+|||+||||||||+|||+|+|||+|+
T Consensus 2 ~k~vt~~I~R~~P~~~~~~p~~~~y~v~~~-~~~tvLdaL~~Ike~~D~sLaFr~sCR~giCGSCam~ING~p~LAC~t~ 80 (240)
T PRK13552 2 GRTLTFNIFRYDPQSPVSKPHMVTYQLEET-PGMTLFIALNLIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTL 80 (240)
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEECCC-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEECCEECCCCCCC
T ss_conf 956999999858999988861589995489-9987999999999724997046514567767866678899641000040
Q ss_pred HHCCCC-CEEEEECCCCEEEEEEEEEHHHHHHHH-HHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 000478-518986489804411245104799988-7542103466631--101112207776544668888873131322
Q gi|254781044|r 104 MKDIKG-AIAVYPLPHMSVIKDLVVDMSHFYSQH-RSIEPWLKTVSPK--PAKELLQSHEDRQKIDGLYECVMCACCSTS 179 (259)
Q Consensus 104 ~~~~~~-~i~iePl~~~pVikDLvVD~~~~~~~~-~~~~p~~~~~~~~--~~~e~~qsped~~~~~~~~~CI~CG~C~sa 179 (259)
++++++ +|+||||++||||||||||++.||+++ ++++||+.+.... .+.|.+|+|+++++++++++||+||+|+++
T Consensus 81 v~~~~~~~i~iePl~~fpVIkDLVVD~~~f~~~~~~~v~~~l~~~~~~~~~~~e~~~~~e~~~~~~~~~~CI~Cg~C~sa 160 (240)
T PRK13552 81 TSDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMAERVESWLHTKKEFDIHRLEERMEPEEAAEIYELDRCIECGCCVAA 160 (240)
T ss_pred HHHCCCCCEEEEECCCCCCCCCCEEECHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 00068995799889999611356540489999998616515426988886644577899999999989998875300323
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHH-HHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 820010222101147889998851688843138899-9622866527676647345518997888999999999998612
Q gi|254781044|r 180 CPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERL-DNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 180 CP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl-~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rk 258 (259)
||++.++++ |+||++|+++|||+.||||+...+|+ +.+.+++|+|+|++|++|+++|||||+|+++|+.|||++++.+
T Consensus 161 Cp~~~~~~~-f~GPaal~~a~r~~~D~RD~~~~erl~~~~~~~~G~~~C~~~~~C~~vCPK~I~p~~~I~~Lrr~~~~~~ 239 (240)
T PRK13552 161 CATKQMRPD-FVGAVGMNRIARFELDPRDERSDEDFYELIGNDDGVFGCMTLLGCEDNCPKDLPLQQQIAYLRRKMAATG 239 (240)
T ss_pred CCCHHHCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 852111536-6688999998886618843357999999852788853899978723719889998999999999999704
Q ss_pred C
Q ss_conf 9
Q gi|254781044|r 259 I 259 (259)
Q Consensus 259 l 259 (259)
|
T Consensus 240 ~ 240 (240)
T PRK13552 240 V 240 (240)
T ss_pred C
T ss_conf 9
No 6
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=0 Score=566.83 Aligned_cols=229 Identities=33% Similarity=0.657 Sum_probs=214.4
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 60799999863688888873689986426788116789999997328763884045677354430314361266321100
Q gi|254781044|r 25 KNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDM 104 (259)
Q Consensus 25 ~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~ 104 (259)
++.+||+||||||+++ +||||+|+++++ +++||||+|++||+++||||+||+|||+||||||||+|||+++|||+|++
T Consensus 1 ~~~v~~~I~Ry~P~~~-~p~~~~y~v~~~-~~~tvLd~L~~IK~~~D~sL~fR~sCr~giCGSCam~ING~~~LAC~t~v 78 (311)
T PRK12576 1 EKEVKFKVKRYDPEKG-ASWWQEYEVEVD-RGTQVTEALRRIKEEQDPTLAYRASCHMAVCGSCGMKINGEPRLACKTLV 78 (311)
T ss_pred CCEEEEEEEEECCCCC-CCCCEEEEEECC-CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEEH
T ss_conf 9568999997489999-956579999679-99979999999996149972674478888887575778993342122055
Q ss_pred HCC----CCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 004----78518986489804411245104799988754210346663--110111220777654466888887313132
Q gi|254781044|r 105 KDI----KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP--KPAKELLQSHEDRQKIDGLYECVMCACCST 178 (259)
Q Consensus 105 ~~~----~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~--~~~~e~~qsped~~~~~~~~~CI~CG~C~s 178 (259)
.++ +++|+||||+|||||||||||+++||+++++++||+.+..+ .+.+|++|+||++++++.+++||+||+|+|
T Consensus 79 ~d~~~~~~~~I~IePL~~~pVikDLvVD~~~f~~k~~~vkPwl~~~~~~~~~~~e~~qspee~~~l~~~~~CIlCg~C~s 158 (311)
T PRK12576 79 LDVAKEGNNVVTVEPLDNFKVVRDLIVDFDEFYERMRKVKPRLYPREEVLEGKGEYRLLPEDQMELWKFAQCIWCGLCVS 158 (311)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHH
T ss_conf 55410569968998689997322251136999999873276250588888986420479999998860543422507860
Q ss_pred HCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 28200102221011478899988516888431388999622866527676647345518997888999999999998612
Q gi|254781044|r 179 SCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 179 aCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rk 258 (259)
+||++.+|++ |+||++|+++|||+.||||+..++||+.+. +|+|+|++|++|++||||||+|+++|..||..+..++
T Consensus 159 ~Cp~~~~n~~-ylGPaal~ka~R~~~DsRD~~~~eRl~~~~--~Gvw~C~~c~~C~~vCPK~i~P~~aI~~lr~~~~~~~ 235 (311)
T PRK12576 159 ACPVVAIDEE-FLGPAALAKGYRFLADPRDTITEERIKILI--DSAWRCTFCYSCSNVCPKDVEPVTAIKKTRALTRLYK 235 (311)
T ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCHHHHHHHHH--CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 1899687988-658899999998746887651899999985--4871662164367558899989999999999999864
No 7
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=553.45 Aligned_cols=230 Identities=55% Similarity=1.012 Sum_probs=218.2
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 07999998636888888736899864267881167899999973287638840456773544303143612663211000
Q gi|254781044|r 26 NLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMK 105 (259)
Q Consensus 26 ~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~ 105 (259)
++++|+|+||||+.+ +||||+|+|+++ +||||||+|++||+++||||+||+|||+||||||||+|||+|+|||+|.|.
T Consensus 1 ~~~~~~i~R~~p~~~-~p~~~~yev~~~-~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~ 78 (234)
T COG0479 1 MTLKFKIYRYNPDDD-KPYWQTYEVPYD-EGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMK 78 (234)
T ss_pred CCEEEEEEEECCCCC-CCEEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 927999999789999-850488883388-998399999999972599600355210776886645799826453122164
Q ss_pred CCCC-CEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCE
Q ss_conf 0478-5189864898044112451047999887542103466-6311011122077765446688888731313228200
Q gi|254781044|r 106 DIKG-AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTV-SPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSY 183 (259)
Q Consensus 106 ~~~~-~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~-~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~ 183 (259)
++.+ .|+||||++||||||||||++.||+++++++||+.+. ...++. ++|+||+++++++++.||+||+|+++||++
T Consensus 79 ~~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~-~~qspe~~~~~~~~~~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 79 DLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGE-RLQSPEEREKLDELSECILCGCCTAACPSI 157 (234)
T ss_pred HCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHCCCCCEECCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
T ss_conf 5567836986778998301225332899875341566055576678753-337999999997554362144404228753
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 1022210114788999885168884313889996228665276766473455189978889999999999986129
Q gi|254781044|r 184 WWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 (259)
Q Consensus 184 ~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rkl 259 (259)
++|+ .|+||++|.+||||+.||||++..+|++.+.+++|+|+|++|++|++||||||+|+.+|..||++++++++
T Consensus 158 ~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~~~ 232 (234)
T COG0479 158 WWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKRGL 232 (234)
T ss_pred CCCC-CCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2365-77688999999998549765341889985047887752616152314289999979999999999999740
No 8
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=0 Score=538.21 Aligned_cols=232 Identities=22% Similarity=0.452 Sum_probs=213.3
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH-------HCCCCEEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 60799999863688888873689986426788116789999997-------32876388404567735443031436126
Q gi|254781044|r 25 KNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKN-------KIDPTLTLRRSCREGICGSCGMNIDGTNT 97 (259)
Q Consensus 25 ~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~-------~~D~sl~fr~sCr~giCGsCa~~iNG~~~ 97 (259)
++.++|+|+||||+ +.+||||+|+|+++ ++|||||+|++|++ ++|++|+||+|||+||||||||+|||+|+
T Consensus 1 ~~~v~~~I~R~~~~-d~~~~~q~y~v~~~-~~~tvLdaL~~I~~~~~~~~ge~~~~l~fr~sCR~giCGSCam~ING~p~ 78 (252)
T PRK08640 1 QKTVRLIIKRQDGP-DSKPYWEEFEIPYR-PNMNVISALMEIRRNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGKPR 78 (252)
T ss_pred CCEEEEEEEECCCC-CCCCCEEEEEEECC-CCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCC
T ss_conf 95699999972899-99962489996179-99859999999986122333545787135425677768878768899212
Q ss_pred CCCCCCHHCCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 6321100004785189864898044112451047999887542103466631-101112207776544668888873131
Q gi|254781044|r 98 LACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPK-PAKELLQSHEDRQKIDGLYECVMCACC 176 (259)
Q Consensus 98 LAC~t~~~~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~-~~~e~~qsped~~~~~~~~~CI~CG~C 176 (259)
|||+|++.+++++|+||||++||||||||||+++||+++++++||+.+.... .+.+..|+|+++++++++++||+||+|
T Consensus 79 LAC~t~~~~~~~~I~iePl~~fpVirDLvVD~~~~~~k~~~i~p~l~~~~~~~~~~~~~~~~e~~~~~~~~~~CI~Cg~C 158 (252)
T PRK08640 79 QACTALIDQLEQPIRLEPMSKFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKQQWAYELSKCMTCGCC 158 (252)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCEEECEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 64563397649933998689996100036634789999986368346688778874456798999998665666654023
Q ss_pred HHHCCCEEECCCCCCCHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 322820010222101147889998851688-8431388999622866527676647345518997888999999999998
Q gi|254781044|r 177 STSCPSYWWNSDRYLGPAILLQAYRWLIDS-RDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLL 255 (259)
Q Consensus 177 ~saCP~~~~~~~~flGP~~l~~a~r~~~D~-rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v 255 (259)
+++||++..++ .|+||++|+++|||..|+ ||..+.+|++.+.+++|+|+|++|++|++||||||+|+++|+.|||.++
T Consensus 159 ~saCp~~~~~~-~f~GPaal~~a~r~~~dp~~d~~~~eRl~~~~~~~G~~~C~~~~~C~~vCPKgI~~~~~I~~lkr~~~ 237 (252)
T PRK08640 159 LEACPNVNEKS-DFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIAGCGNSQNCVRVCPKGIPLTTSIAAMNRETT 237 (252)
T ss_pred CCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 22376121360-00207999999861128887721899999964789820798968702408889998999999999999
Q ss_pred HCCC
Q ss_conf 6129
Q gi|254781044|r 256 DRKI 259 (259)
Q Consensus 256 ~rkl 259 (259)
+..+
T Consensus 238 k~~~ 241 (252)
T PRK08640 238 KQSF 241 (252)
T ss_pred HHHH
T ss_conf 9999
No 9
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=0 Score=528.39 Aligned_cols=228 Identities=26% Similarity=0.542 Sum_probs=210.1
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 60799999863688888873689986426788116789999997328763884045677354430314361266321100
Q gi|254781044|r 25 KNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDM 104 (259)
Q Consensus 25 ~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~ 104 (259)
++.+||+|||||| .+++||+|+|++++ ++||||+|++||+++||||+||+|||+||||||||+|||+|+|||+|+|
T Consensus 2 ~~~l~~kI~R~d~---~~g~~~~y~v~~~~-~~tvLdaL~~Ik~~~d~slafr~~CR~giCGsCam~ING~~~laC~t~v 77 (250)
T PRK12386 2 GYTAKFRVWRGDE---SGGELQDYTVEVNE-GEVVLDIIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRM 77 (250)
T ss_pred CCEEEEEEEECCC---CCCCEEEEEECCCC-CCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEECCEECHHHHCCC
T ss_conf 9615899983799---88987889941899-9809999999996159983386268888678675258985335650540
Q ss_pred HCCC--CCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf 0047--85189864898044112451047999887542103466631101112207776544668888873131322820
Q gi|254781044|r 105 KDIK--GAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 105 ~~~~--~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~ 182 (259)
+++. ++|+||||++||||||||||++.||+++++++||+.+....+ .+.+|+|+++++++++++||+||+|+++||+
T Consensus 78 ~~~~~~~~I~IePl~~fpVIkDLvVD~s~~~~k~~~v~~~~~~~~~~~-~~~~~~pe~~~~~~~~~~CI~CgaC~saCp~ 156 (250)
T PRK12386 78 STFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFAPPKDLQP-GEYRMAQEDVERSQEFRKCIECFLCQNVCHV 156 (250)
T ss_pred HHCCCCCEEEEEECCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 222899818997578997112655507488986300363158899996-0012898889999988775554554535786
Q ss_pred EEE---CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHH-HHHHHHHHHHHHCC
Q ss_conf 010---22210114788999885168884313889996228665276766473455189978889-99999999998612
Q gi|254781044|r 183 YWW---NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPA-KAIAKIKMMLLDRK 258 (259)
Q Consensus 183 ~~~---~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~-~~I~~LRr~~v~rk 258 (259)
+.. +++.|+||++++++|||..||||+ .++|+..+.+++|+|+|++|++|++||||||+|+ .+|..||+++++|+
T Consensus 157 ~~~~~~~~~~f~GP~al~ka~r~~~d~rD~-~~~r~~~~~~~~G~~~C~~~~~C~~vCPK~I~~~~~AI~~lr~~~~~r~ 235 (250)
T PRK12386 157 VRDHEENKPAFAGPRFLMRIAELEMHPLDT-RDRRAEDAQEEHGLGYCNITKCCTEVCPENIKITDNALIPMKERVADRK 235 (250)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 665533464773889999999744399755-9999998227888614988584203089999868999999999999714
No 10
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=0 Score=522.66 Aligned_cols=222 Identities=33% Similarity=0.629 Sum_probs=204.1
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 07999998636888888736899864267881167899999973287638840456773544303143612663211000
Q gi|254781044|r 26 NLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMK 105 (259)
Q Consensus 26 ~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~ 105 (259)
++++++|+||||++| +||||+|+|+++ ++|||||+|++||+++||||+||+|||+||||||||+|||+|+|||+|+++
T Consensus 2 ~~i~i~V~R~~pe~d-~p~~~~y~v~~~-e~mtvL~aL~~I~~~~d~tl~fr~sCr~giCGsCav~iNG~p~LAC~t~v~ 79 (491)
T PRK06259 2 KMIKVTVKRFEPETD-EPHFEEYEVPVT-EGMTVLDALEAINKTYDPNIAFRSSCRAGQCGSCAVRINGEPVLACKTEVE 79 (491)
T ss_pred CEEEEEEEEECCCCC-CCCCEEEEECCC-CCCHHHHHHHHHHHHCCCCEEHHHHCCCCCCCCCEEEECCEEEEEEEEECC
T ss_conf 528999996477789-855566761587-988099999999861299655152056876887878889967776555516
Q ss_pred CCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEE
Q ss_conf 04785189864898044112451047999887542103466631101112207776544668888873131322820010
Q gi|254781044|r 106 DIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 106 ~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~~~ 185 (259)
| +++|||| +||||||||||+++|++++++++||+.+..+.+. +..++|++.+++.++++||+||+|+|+||++..
T Consensus 80 d---~~~IePl-~fpVikDLvVD~~~~~~k~~~i~~~~~~~~~~~~-~~~~~pe~~~~~~~~~~CI~C~~C~s~Cp~~~~ 154 (491)
T PRK06259 80 D---GMIIEPL-DFPVIKDLVVDREPYYKKIATLRNYLQAKNEKIS-LEELTPEDIKDIKKLRGCIECLSCISMCPAIKV 154 (491)
T ss_pred C---CCEEECC-CCCCEECCEEECHHHHHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHCHHHCCHHHHCCCCCC
T ss_conf 8---8567348-8862100166629999999974422166765421-123799999988877634564323744876757
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCH-HHHHHHHHHHHHHCCC
Q ss_conf 2221011478899988516888431388999622866527676647345518997888-9999999999986129
Q gi|254781044|r 186 NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNP-AKAIAKIKMMLLDRKI 259 (259)
Q Consensus 186 ~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~-~~~I~~LRr~~v~rkl 259 (259)
+ .|+||++|.++|||..||||+...++. ++ .+|+|+|++|+.|++||||+|++ +++|+.||..+.+++.
T Consensus 155 -~-dy~GP~~~~~~~Rf~~DpRD~~~r~~~-a~--~~gl~~Ct~C~~C~~vCPK~i~~~~~~ie~~r~~~~~~g~ 224 (491)
T PRK06259 155 -S-DYPGPTFMRQLARFAFDPRDEGDREKE-AI--DEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRAKAFKEGY 224 (491)
T ss_pred -C-CCCCHHHHHHHHHHCCCCCCCCCHHHH-HH--HCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf -7-786889999999861688776006899-98--7797437635804443887677666899999999974568
No 11
>KOG3049 consensus
Probab=100.00 E-value=0 Score=461.91 Aligned_cols=237 Identities=66% Similarity=1.251 Sum_probs=223.0
Q ss_pred CCCCCCCEEEEEEEEECCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 77788607999998636888-88873689986426788116789999997328763884045677354430314361266
Q gi|254781044|r 20 APTGEKNLKEYRIYRWNPDN-KGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTL 98 (259)
Q Consensus 20 ~~~~~~~~~~~~i~R~~p~~-~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~L 98 (259)
.....+++.||.|+||||+. +.+|+.|+|+|++++.|.+|||||.+||+|+||||+||+|||+||||||||.|||.++|
T Consensus 39 ~~~~~~rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~NtL 118 (288)
T KOG3049 39 AAATGPRLKTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTL 118 (288)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECHHHCCHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCEECCCCCCEE
T ss_conf 21248764048888618998888863123663378625499999987402458731114444335540012134897415
Q ss_pred CCCCCHHC-CCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 32110000-47851898648980441124510479998875421034666311---011122077765446688888731
Q gi|254781044|r 99 ACVKDMKD-IKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKP---AKELLQSHEDRQKIDGLYECVMCA 174 (259)
Q Consensus 99 AC~t~~~~-~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~---~~e~~qsped~~~~~~~~~CI~CG 174 (259)
||...++. .....+|.|||++=||||||.|++.||+++++|+||+..+++.. ..|++|+.+|+.+++.++.||+|.
T Consensus 119 ACi~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYECILCA 198 (288)
T KOG3049 119 ACICKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYECILCA 198 (288)
T ss_pred EEEEEECCCCCCCCEEECCCCEEEEHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 78886236887431254275256612205327899998740158760488344611778887188787501278879888
Q ss_pred CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 31322820010222101147889998851688843138899962286652767664734551899788899999999999
Q gi|254781044|r 175 CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMML 254 (259)
Q Consensus 175 ~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~ 254 (259)
+|..+||+|++|+++||||++|++||||+.|+||+...+||+.++|+..+|+|++..+|+..||||++|+.+|.+++..+
T Consensus 199 CCsTSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~slyrCHtImNCtrtCPKgLNPg~aI~eiK~ll 278 (288)
T KOG3049 199 CCSTSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKLL 278 (288)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 75589950001732243789999877764224027799999986393142011222312301877798788999999999
Q ss_pred HH
Q ss_conf 86
Q gi|254781044|r 255 LD 256 (259)
Q Consensus 255 v~ 256 (259)
..
T Consensus 279 ~~ 280 (288)
T KOG3049 279 AG 280 (288)
T ss_pred HH
T ss_conf 76
No 12
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=100.00 E-value=0 Score=443.67 Aligned_cols=224 Identities=25% Similarity=0.437 Sum_probs=178.7
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCEEEECCCC------
Q ss_conf 79999986368888887368998642678811678999999732----87638840456773544303143612------
Q gi|254781044|r 27 LKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKI----DPTLTLRRSCREGICGSCGMNIDGTN------ 96 (259)
Q Consensus 27 ~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~----D~sl~fr~sCr~giCGsCa~~iNG~~------ 96 (259)
.++|+|||+++ .+.+||||+|+|+..+++||||+||++||+++ |.+|+||+|||+||||||||+|||+|
T Consensus 2 ~v~~~I~R~~~-~~~~p~~q~y~v~~~~~~mtVL~aL~~i~~~~~~~~~~pLsfR~sCr~giCGSCam~ING~p~~~~~~ 80 (247)
T PRK07570 2 KLTLKIWRQKG-PKAKGKFETYEVKDISPDMSFLEMLDVLNEQLILKGEEPVAFDHDCREGICGMCGLVINGRPHGPDRG 80 (247)
T ss_pred EEEEEEEECCC-CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 17999984799-98897328888068899884999999999987652699647742567776776841688852777656
Q ss_pred CCCCCCCHHCCC--CCEEEEEC--CCCEEEEEEEEEHHHHHHHHHHHHHCCCCCC-C-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 663211000047--85189864--8980441124510479998875421034666-3-1101112207776544668888
Q gi|254781044|r 97 TLACVKDMKDIK--GAIAVYPL--PHMSVIKDLVVDMSHFYSQHRSIEPWLKTVS-P-KPAKELLQSHEDRQKIDGLYEC 170 (259)
Q Consensus 97 ~LAC~t~~~~~~--~~i~iePl--~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~-~-~~~~e~~qsped~~~~~~~~~C 170 (259)
+|||+|++.++. ++|+|||| ++||||||||||++.| .++.++++|+.... . +++.+.++++++++++++++.|
T Consensus 81 ~LAC~t~v~~~~~g~~I~iePLr~~~fPVIkDLVVD~~~f-~k~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~C 159 (247)
T PRK07570 81 TTTCQLHMRSFKDGDTITIEPWRAKAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADLAMDAAAC 159 (247)
T ss_pred CCCEECHHHHCCCCCCEEECCCCCCCCCEEEEEEECCHHH-HHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHCHHHH
T ss_conf 5410251232788981377246567998301124203899-998864385405888899722356898899974352330
Q ss_pred HHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCC-HHHHHH---HHCCCCCCCCCCCCCCHHHHCCCCCCHHHH
Q ss_conf 8731313228200102221011478899988516888431-388999---622866527676647345518997888999
Q gi|254781044|r 171 VMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEF-QGERLD---NLEDPFRLYRCHTIMNCTQSCPKGLNPAKA 246 (259)
Q Consensus 171 I~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~-~~erl~---~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~ 246 (259)
|+||+|+++||+.. ...|+||. ++++..++++.. +++|.. ...+++|+|+|++|++|++|||||| |.++
T Consensus 160 I~Cg~C~saCPn~~--~~~f~ga~----~~~~~~~~~~~~~r~~r~~~~~~~~~~~G~~~C~~~~~C~~vCPK~I-p~~~ 232 (247)
T PRK07570 160 IGCGACVAACPNGS--AMLFTGAK----VSHLALLPQGQPERARRVRAMVDAMDEEGFGNCSNTGECEAVCPKGI-SLDN 232 (247)
T ss_pred HCCCHHHHCCCCCC--CCCCCHHH----HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CHHH
T ss_conf 11334441089862--22332576----64302375650557789999999874588658988687014087999-9999
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999986129
Q gi|254781044|r 247 IAKIKMMLLDRKI 259 (259)
Q Consensus 247 I~~LRr~~v~rkl 259 (259)
|+.|||+++++++
T Consensus 233 I~~lkre~~~~~~ 245 (247)
T PRK07570 233 IARMNREYLRAKF 245 (247)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999872
No 13
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein; InterPro: IPR004489 Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (1.3.99.1 from EC). In Escherichia coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This group also includes a region of the B subunit of a cytosolic archaeal fumarate reductase.; GO: 0016491 oxidoreductase activity, 0006099 tricarboxylic acid cycle, 0006118 electron transport.
Probab=100.00 E-value=0 Score=325.45 Aligned_cols=219 Identities=45% Similarity=0.963 Sum_probs=203.5
Q ss_pred EEEECCCCCCC-CCEEEEEEECCCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC
Q ss_conf 98636888888-73689986426788-11678999999732876388404567735443031436126632110000478
Q gi|254781044|r 32 IYRWNPDNKGN-PCMDTYYVDLDNCG-PMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG 109 (259)
Q Consensus 32 i~R~~p~~~~~-~~~~~y~v~~~~~~-~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~ 109 (259)
|.||+|+.+.. +||+.|++++++ + +++|++|.+|++++|++|+||++||.|+||+|++++||++.|||.+.+.+..+
T Consensus 1 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~c~~~~cg~c~~~~~~~~~l~c~~~~~~~~~ 79 (236)
T TIGR00384 1 VLRFNPDVDEAKPHLESYELPADE-GTLTLLDALGYIKDELDPSLAFRKSCRNGICGSCALKVNGKPRLACKTKVEDLGG 79 (236)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCC
T ss_conf 955577764101222210233334-3257899999875420321134544321001200000067420122322333101
Q ss_pred -----------CEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCC-CCC-CCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf -----------5189864898044112451047999887542103466631-101-112207776544668888873131
Q gi|254781044|r 110 -----------AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPK-PAK-ELLQSHEDRQKIDGLYECVMCACC 176 (259)
Q Consensus 110 -----------~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~-~~~-e~~qsped~~~~~~~~~CI~CG~C 176 (259)
.++|+||++|||+|||+||++.|+++++.++||+...... +.. +.+++|++.+++..+..||.||+|
T Consensus 80 ~~~~~~~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~~~~py~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~c~~c 159 (236)
T TIGR00384 80 PLKESNEEGTGVLTIEPLGNLPVIKDLVVDLGPFYEKLEAVKPYLIRKGRPEPGGKELLQTPEEREKLDGLSGCILCGAC 159 (236)
T ss_pred CHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 00010002565268620677521455553136788877655434422577732002343045788876666667777555
Q ss_pred HHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCHHHHCCCCCC-HHHHHHHHH
Q ss_conf 3228200102221011478899988516888431388999622-86652767664734551899788-899999999
Q gi|254781044|r 177 STSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLE-DPFRLYRCHTIMNCTQSCPKGLN-PAKAIAKIK 251 (259)
Q Consensus 177 ~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~-~~~gi~~C~~C~~C~~vCPkgI~-~~~~I~~LR 251 (259)
+++||.+..+++.|+||+++..++||..|+||.+...|+..+. +..|+|.|+.|+.|.++||++++ |..+|..++
T Consensus 160 ~~~cp~~~~~~~~~~gp~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~c~~~~~c~~~cp~~~~~p~~~~~~~~ 236 (236)
T TIGR00384 160 YSSCPAFWWNPDKFLGPAALTKAYRFLLDSRDGGTKDRLELLNNDSNGVWGCTTCGKCSEVCPKGLDPPGDAIEKLK 236 (236)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCC
T ss_conf 43202000353101246899999887404433102456765301212200123344444421221321356774139
No 14
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=99.61 E-value=5.3e-16 Score=119.62 Aligned_cols=80 Identities=19% Similarity=0.493 Sum_probs=62.8
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHH
Q ss_conf 88888731313228200102221011478899988516888431388999622866527676647345518997888999
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKA 246 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~ 246 (259)
+..|++||.|+++||+.... + ..|+.+++...+.. + +.+..+..+|.|++|+.|+++||+||++++.
T Consensus 1 l~~C~qCG~Cta~CP~~~~~-~--~~pR~iir~~~~G~--~--------e~vl~s~~lW~C~tC~~C~~~CP~gV~~~~v 67 (144)
T TIGR03290 1 VKACYQCGTCTGSCPSGRRT-S--YRTRLIIRKALLGL--K--------DEVISDDDLWMCTTCYTCQERCPRDVKITDI 67 (144)
T ss_pred CCCCCCCCCCCCCCCCCCCC-C--CCHHHHHHHHHCCC--H--------HHHCCCCCCCCCCCCCCHHHHCCCCCCHHHH
T ss_conf 97055799987849999888-9--89899999998688--0--------2330688630384737540134899988999
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999986129
Q gi|254781044|r 247 IAKIKMMLLDRKI 259 (259)
Q Consensus 247 I~~LRr~~v~rkl 259 (259)
|..||+.+++++.
T Consensus 68 I~~lR~~A~~~G~ 80 (144)
T TIGR03290 68 IKALRNLAAKKGF 80 (144)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998599
No 15
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=99.59 E-value=2e-15 Score=116.06 Aligned_cols=81 Identities=25% Similarity=0.564 Sum_probs=65.9
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHH
Q ss_conf 68888873131322820010222101147889998851688843138899962286652767664734551899788899
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAK 245 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~ 245 (259)
.+..|++||.|+++||+... .+ .+|+-+++.+++.. .+ ..+. .+.+|.|++|+.|.+.||+|++|.+
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~-t~--y~pR~ii~~~~~g~------~d---~il~-~~~lW~C~tCytC~eRCPr~v~i~~ 103 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRF-TD--YSPRKIIRKARLGL------VD---LILS-SESLWACVTCYTCTERCPRGVKIVE 103 (195)
T ss_pred HHHHHHCCCCCCCCCCCCCC-CC--CCHHHHHHHHHCCC------HH---HHHC-CCCCEEEEECHHHHHHCCCCCCHHH
T ss_conf 57676406866577887655-78--88899999998362------98---8861-7740664101204301899998999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999986129
Q gi|254781044|r 246 AIAKIKMMLLDRKI 259 (259)
Q Consensus 246 ~I~~LRr~~v~rkl 259 (259)
.|..||+.++++++
T Consensus 104 vv~~lR~~a~k~G~ 117 (195)
T COG1150 104 VVKALRNIAVKEGL 117 (195)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998143
No 16
>TIGR00273 TIGR00273 iron-sulfur cluster binding protein; InterPro: IPR004452 Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulphur clusters..
Probab=99.51 E-value=9.4e-15 Score=111.86 Aligned_cols=181 Identities=18% Similarity=0.285 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----------CEEEE--CCC-CCCCCCCCHHCCCCCEEEEECCCCEE
Q ss_conf 881167899999973287638840456773544----------30314--361-26632110000478518986489804
Q gi|254781044|r 55 CGPMVLDGLLYIKNKIDPTLTLRRSCREGICGS----------CGMNI--DGT-NTLACVKDMKDIKGAIAVYPLPHMSV 121 (259)
Q Consensus 55 ~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGs----------Ca~~i--NG~-~~LAC~t~~~~~~~~i~iePl~~~pV 121 (259)
+...++.+=..+++++ |+|+- ||-|- |-+.= ||| .+.+|+|++.=.+=+=.++-..-+-|
T Consensus 165 pE~L~~~~R~~~R~~F---l~a~~----GisGcNfa~A~tG~i~Lv~NEGN~RlsTtlPkt~~A~~giEki~psF~d~~v 237 (450)
T TIGR00273 165 PEKLALIARKFMRKKF---LSADI----GISGCNFAIAETGSIFLVENEGNGRLSTTLPKTHIAVMGIEKIVPSFDDAEV 237 (450)
T ss_pred HHHHHHHHHHHHHHHH---HCCCC----CEEECCEEEECCCEEEEEEECCCHHHHCCCCCCEEEEEEHHHCCCCCCHHHH
T ss_conf 7899999999862665---11345----3000020465575189996257213212452230743113112677450899
Q ss_pred EEEEEEEHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCHHH---------------HHHHHHHHHHHHHCCCHHHCCCEEE
Q ss_conf 411245104799-988754210346663110111220777---------------6544668888873131322820010
Q gi|254781044|r 122 IKDLVVDMSHFY-SQHRSIEPWLKTVSPKPAKELLQSHED---------------RQKIDGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 122 ikDLvVD~~~~~-~~~~~~~p~~~~~~~~~~~e~~qsped---------------~~~~~~~~~CI~CG~C~saCP~~~~ 185 (259)
+.-|.+ +|.|+ ..+-....|+..-... + ...-|++ -+++.+.-+||+||+|...||+|.-
T Consensus 238 L~~~l~-~SAfvG~~~t~Y~n~~tgp~~~--G-~vDGP~E~H~illDNgRS~iL~~ekF~~~L~CiRCG~C~n~CPvY~~ 313 (450)
T TIGR00273 238 LKSMLA-RSAFVGVRLTAYINVLTGPRKE--G-DVDGPEEFHLILLDNGRSNILATEKFREVLACIRCGACLNECPVYRH 313 (450)
T ss_pred HHHHCC-CCCCCCCCCCCCCCCCCCCCCC--C-CCCCCCEEEEEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 987411-2111478875333101574005--8-88887426898983782111136568987413301234114860111
Q ss_pred -----CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf -----222101147889998851688843138899962286-65276766473455189978889999999999986129
Q gi|254781044|r 186 -----NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDP-FRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 (259)
Q Consensus 186 -----~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~-~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rkl 259 (259)
.++-|-||.+.+... +++ .+.|- +==|.|+.|++|.+|||..||..+.|.++|+..++++.
T Consensus 314 ~Ggh~YGs~Y~GPiG~v~Sp--~l~-----------g~~dYk~lPylssLCg~C~evCPv~IpL~~Lir~~R~~~ve~Gr 380 (450)
T TIGR00273 314 IGGHAYGSIYPGPIGAVVSP--LLG-----------GYNDYKELPYLSSLCGACREVCPVKIPLAELIREHRSDIVEKGR 380 (450)
T ss_pred CCCCCCCCCCCCHHHEEHHH--HHH-----------HHHHHHCCCCHHCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 46602453158712311113--541-----------04433112331034106788885110879999998788630685
No 17
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=99.43 E-value=1.8e-13 Score=103.88 Aligned_cols=85 Identities=25% Similarity=0.552 Sum_probs=65.5
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHH
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978889
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPA 244 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~ 244 (259)
..+.+||+||.|.++||+|.+.+++..+|++.+.+.|-+.++.+.....+. . +..|+.|+.|..+||.||+.+
T Consensus 20 ~~v~~Cv~CG~C~~~CPsy~~t~~E~~spRGRi~Llr~~l~g~~~~~~~~~-~------ld~Cl~C~~C~~~CP~gV~~~ 92 (407)
T PRK11274 20 AILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTEKTQL-H------LDRCLTCRNCETTCPSGVQYG 92 (407)
T ss_pred HHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH-H------HHHCCCCCCCCCCCCCCCCHH
T ss_conf 999977878866366988210278777950999999999829988778999-8------475718587465378999779
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999986
Q gi|254781044|r 245 KAIAKIKMMLLD 256 (259)
Q Consensus 245 ~~I~~LRr~~v~ 256 (259)
+.|...|..+.+
T Consensus 93 ~li~~~R~~~~~ 104 (407)
T PRK11274 93 RLLDIGRKVVEE 104 (407)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 18
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=99.38 E-value=1.9e-13 Score=103.83 Aligned_cols=84 Identities=21% Similarity=0.477 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHCCCHHHCCCEEEC-----CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf 446688888731313228200102-----221011478899988516888431388999622866527676647345518
Q gi|254781044|r 163 KIDGLYECVMCACCSTSCPSYWWN-----SDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSC 237 (259)
Q Consensus 163 ~~~~~~~CI~CG~C~saCP~~~~~-----~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vC 237 (259)
.+.+.-.||+||+|..+||+|..- +.-|.||.+-+... +.++-+ . ..+..+.|+.||.|.+||
T Consensus 303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~--~~~g~~--------~--~~~~~~~c~lcg~C~evC 370 (459)
T COG1139 303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSP--ILGGYD--------A--AGDLPYACSLCGACTEVC 370 (459)
T ss_pred HHHHHHHHHCCHHHHHCCHHHHHCCCEECCCCCCCCCCEEEEH--HHCCHH--------H--CCCCCHHHHHCCCCCCCC
T ss_conf 8999887600007651381566536720257468864226300--004433--------2--346212443315777768
Q ss_pred CCCCCHHHHHHHHHHHHHHCC
Q ss_conf 997888999999999998612
Q gi|254781044|r 238 PKGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 238 PkgI~~~~~I~~LRr~~v~rk 258 (259)
|..|++.+.|.++|+..++.+
T Consensus 371 Pv~Ipl~eli~~lR~~~~~~~ 391 (459)
T COG1139 371 PVKIPLPELIRKLRRVAAESG 391 (459)
T ss_pred CCCCCHHHHHHHHHHHHHHCC
T ss_conf 888988999999999986347
No 19
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=99.37 E-value=4e-13 Score=101.79 Aligned_cols=81 Identities=22% Similarity=0.481 Sum_probs=57.1
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHH-HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHH
Q ss_conf 68888873131322820010222101147889-99885168884313889996228665276766473455189978889
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILL-QAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPA 244 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~-~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~ 244 (259)
.++.||+||.|.++||++.+++ .|.||.... ...|+..+.. +.+ .+.+|.|++|++|+.+||.||++.
T Consensus 9 ~~d~C~~CG~C~~~CP~~~~~~-~~~~~~~~~~~~~~~~l~~~--------~~~--~e~ld~C~~C~~C~~~CP~~V~~~ 77 (400)
T PRK11168 9 SFDSCIKCTVCTTACPVARVNP-LYPGPKQAGPDGERLRLKDP--------ALY--DEALKYCSNCKRCEVACPSGVKIG 77 (400)
T ss_pred HHHHCCCCCCCCCCCCCCCCCC-CCCCCHHCCCHHHHHHCCCC--------HHH--HHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 9986668898813188732468-88881013707776440364--------233--466153747488374271999879
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999861
Q gi|254781044|r 245 KAIAKIKMMLLDR 257 (259)
Q Consensus 245 ~~I~~LRr~~v~r 257 (259)
+.|..+|...+++
T Consensus 78 ~li~~~R~~~~~~ 90 (400)
T PRK11168 78 DIIQRARAKYVTT 90 (400)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999875
No 20
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.29 E-value=7.3e-13 Score=100.14 Aligned_cols=184 Identities=15% Similarity=0.205 Sum_probs=91.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCEEEECCCCCCCCCCCHHCCCCCEEEEE------------
Q ss_conf 864267881167899999973287638840456-7735443031436126632110000478518986------------
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCR-EGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYP------------ 115 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr-~giCGsCa~~iNG~~~LAC~t~~~~~~~~i~ieP------------ 115 (259)
++++. +|+|||++..+.--+ =|+|-|.-.+. .|.|-.|-|.|+|+..+||.|++.+ ++.|.-
T Consensus 10 ~~~~~-~g~til~aa~~~gi~-IP~lCy~~~l~p~g~Cr~C~VEv~G~~~~sC~t~v~~---GM~V~T~s~~v~~~r~~v 84 (819)
T PRK08493 10 EIECQ-EGEYILNAARRNGIF-IPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKE---GMNILTNTPNLNDERNAI 84 (819)
T ss_pred EEEEC-CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC---CCEEEECCHHHHHHHHHH
T ss_conf 99969-999799999973998-5614489992968877663898789482674888899---999997999999999999
Q ss_pred ----CCCCEEEEEEEEEHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCHHH-H-HHHHHHHHHHHHCCCHHHCCCEEECCC
Q ss_conf ----48980441124510479998875-4210346663110111220777-6-544668888873131322820010222
Q gi|254781044|r 116 ----LPHMSVIKDLVVDMSHFYSQHRS-IEPWLKTVSPKPAKELLQSHED-R-QKIDGLYECVMCACCSTSCPSYWWNSD 188 (259)
Q Consensus 116 ----l~~~pVikDLvVD~~~~~~~~~~-~~p~~~~~~~~~~~e~~qsped-~-~~~~~~~~CI~CG~C~saCP~~~~~~~ 188 (259)
|.+.|+ .-.|-|.+.--+ ++. ...|=....+.+..... .|.+ . -..++...||+||.|+.+|.-...+..
T Consensus 85 ~e~ll~nHpl-~C~vCd~~g~C~-Lq~~~~~~gv~~~~~~~~~~~-~~~~~~~~~~~d~~~CI~C~rCVr~C~ev~g~~~ 161 (819)
T PRK08493 85 MQTYDVNHPL-ECGVCDKSGECE-LQNFTHEMRVNHQKYAIKDTH-KPHKSWGKINYDPSLCIVCERCVTVCKDKIGESA 161 (819)
T ss_pred HHHHHHCCCC-CCCCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 9999857998-788789878858-999999859998778766777-7567888466441317407689999887618633
Q ss_pred CCCCHHHH---HHHHHHHCCCCCCC---HHHHHHHH-CCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 10114788---99988516888431---38899962-28665276766473455189978
Q gi|254781044|r 189 RYLGPAIL---LQAYRWLIDSRDEF---QGERLDNL-EDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 189 ~flGP~~l---~~a~r~~~D~rD~~---~~erl~~l-~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
--+..+++ ...|.- .-++|.. .......+ ....+-..|..||+|+.+||.|-
T Consensus 162 l~~~~rG~~~~~~~~~~-~~~~d~~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~vCP~GA 220 (819)
T PRK08493 162 LKTVPRGLDAVDKSFKE-SMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGA 220 (819)
T ss_pred EEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 66513676443342234-344321001243443211356788767701142575397532
No 21
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=99.28 E-value=2.5e-12 Score=96.83 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=55.7
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHH-HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHH
Q ss_conf 688888731313228200102221011478899-9885168884313889996228665276766473455189978889
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQ-AYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPA 244 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~-a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~ 244 (259)
.+..||+||.|.++||++..+.. |.|+..... ..++.... .+.. ++.++.|+.|++|+.+||.||++.
T Consensus 3 ~~d~Ci~CG~C~~~CP~~~~~~~-~~g~~~~~~~g~~~~l~~--------~~~~--~~~l~~C~~C~~C~~~CP~gV~~~ 71 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVAKANPL-YPGPKQAGPDGERLRLKS--------AELY--DEALKYCTNCKRCEVACPSDVKIG 71 (397)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCC-CCCHHHCCHHHHHHHHCC--------CHHH--HHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 31227588988373868545788-887254084467665036--------4434--156163827688365387999878
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999998612
Q gi|254781044|r 245 KAIAKIKMMLLDRK 258 (259)
Q Consensus 245 ~~I~~LRr~~v~rk 258 (259)
+.|..+|....+++
T Consensus 72 ~li~~~R~~~~~~~ 85 (397)
T TIGR03379 72 DIIARARNKYQKKK 85 (397)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998726
No 22
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=99.21 E-value=4.4e-12 Score=95.31 Aligned_cols=84 Identities=23% Similarity=0.434 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 07776544668888873131322820010222101147889998851688843138899962286652767664734551
Q gi|254781044|r 157 SHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQS 236 (259)
Q Consensus 157 sped~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~v 236 (259)
+.+|...-.....||+||.|+++||+. |-|..|.+.++ .+.++.+. ++++.+|..||.|+.+
T Consensus 361 ~~~E~~~~~~~~~CIRCg~Cv~~CPm~-------L~P~~L~~~A~----------~~~~d~~~-~~~L~DCIECG~C~Y~ 422 (444)
T TIGR01945 361 DKEELTEPKPEKPCIRCGKCVNVCPMG-------LLPQQLNWLAK----------ADEFDEAA-EHNLMDCIECGSCSYV 422 (444)
T ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCC-------CHHHHHHHHHH----------HHHHHHHH-HCCCCEEEECCCCCCC
T ss_conf 701167874667884400101556744-------22799998753----------10168899-6388146612566542
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8997888999999999998612
Q gi|254781044|r 237 CPKGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 237 CPkgI~~~~~I~~LRr~~v~rk 258 (259)
||.+|++.+-|+.-|..+-.++
T Consensus 423 CPs~iPLV~Y~R~aK~~~~~~~ 444 (444)
T TIGR01945 423 CPSNIPLVQYIRQAKAKLREKK 444 (444)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8775258999988789861379
No 23
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=99.19 E-value=1e-11 Score=93.08 Aligned_cols=86 Identities=23% Similarity=0.462 Sum_probs=66.8
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCH
Q ss_conf 46688888731313228200102221011478899988516888431388999622866527676647345518997888
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNP 243 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~ 243 (259)
...+..|++||.|.++||++..+ +..+|+......|.....+... .+.. ...+|.|++|+.|+..||.+|++
T Consensus 5 ~~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~~~~~~~~~~~----~~~~--~~~~~~C~~C~~C~~~CP~~i~~ 76 (388)
T COG0247 5 FESLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPG----DEEV--YEALDTCLACGACATACPSGIDI 76 (388)
T ss_pred HHHHHHCCCCCCCCCCCCCHHCC--CCCCCCHHHHHHHHHHHCCCCC----HHHH--HHHHHHHCCHHHHHHHCCCCCCH
T ss_conf 43304346378452689841206--7788431588899998502651----1444--88877500536899848878974
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999861
Q gi|254781044|r 244 AKAIAKIKMMLLDR 257 (259)
Q Consensus 244 ~~~I~~LRr~~v~r 257 (259)
.+.|..+|+...++
T Consensus 77 ~~~~~~~r~~~~~~ 90 (388)
T COG0247 77 GDLIREARRKLAKG 90 (388)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88999999987642
No 24
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=99.09 E-value=5.6e-11 Score=88.42 Aligned_cols=74 Identities=22% Similarity=0.438 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCH
Q ss_conf 46688888731313228200102221011478899988516888431388999622866527676647345518997888
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNP 243 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~ 243 (259)
......||+||.|+.+||+. |-|..|.+.++- . .++.+. .+++++|..||.|+.|||.+|++
T Consensus 372 ~~~e~~CIRCG~Cv~aCP~~-------LlPqqL~w~ak~----~------~~dka~-~~~l~DCIECG~CaYVCPS~IPL 433 (725)
T PRK05035 372 PPPEQACIRCGACADACPAS-------LLPQQLYWFAKA----E------EHDKAE-EHNLFDCIECGACAYVCPSNIPL 433 (725)
T ss_pred CCCCCCCCCCCHHHHHCCCC-------CCHHHHHHHHHC----C------CHHHHH-HCCCCCCCCCCCCCEECCCCCCH
T ss_conf 88887775251367638997-------779999999876----7------799998-67996360028776268988848
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781044|r 244 AKAIAKIKMMLL 255 (259)
Q Consensus 244 ~~~I~~LRr~~v 255 (259)
..-+..-+..+-
T Consensus 434 VqYyR~aK~eI~ 445 (725)
T PRK05035 434 VQYYRQAKAEIR 445 (725)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 25
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.05 E-value=3.8e-11 Score=89.50 Aligned_cols=171 Identities=20% Similarity=0.292 Sum_probs=85.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEECCCCCC--CCCCCHHCCCCCEEEEECCCCEEEEE-
Q ss_conf 8642678811678999999732876388404-5677354430314361266--32110000478518986489804411-
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNIDGTNTL--ACVKDMKDIKGAIAVYPLPHMSVIKD- 124 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~iNG~~~L--AC~t~~~~~~~~i~iePl~~~pVikD- 124 (259)
++++. +|.|||||.....-+ =|+|-|.-. =-.|.|.-|.|.|+|.++| ||.|++.+ ++.|.- +-|-+++
T Consensus 12 ~v~v~-~G~tILeaa~~~Gi~-IP~LCy~~~l~~~G~CR~C~VEveG~~~lv~sC~t~v~e---GM~V~T--~s~~v~~~ 84 (236)
T PRK07569 12 LVSAR-EGETILQAAREAGIP-IPTLCHLEGVSDVGACRLCLVEVEGSNKLLPACVTPVAE---GMVVQT--NTPRLQEY 84 (236)
T ss_pred EEEEC-CCCHHHHHHHHCCCC-CCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC---CCEEEE--CCHHHHHH
T ss_conf 99968-989599999985998-472546899398886673279989985315663758899---848992--99899999
Q ss_pred ----------------EEEEHHHHHHHHHHH-HHCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEE
Q ss_conf ----------------245104799988754-21034666311--01112207776544668888873131322820010
Q gi|254781044|r 125 ----------------LVVDMSHFYSQHRSI-EPWLKTVSPKP--AKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 125 ----------------LvVD~~~~~~~~~~~-~p~~~~~~~~~--~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~~~ 185 (259)
++-|.+.-- .++.+ .-|-......+ .....+.........+..+||+||.|+.+|.-+..
T Consensus 85 Rk~~lellL~~H~~dC~~C~~~g~C-eLQ~la~~~g~~~~r~~~~~~~~~~d~s~p~i~~D~~rCI~CgRCVr~C~evqg 163 (236)
T PRK07569 85 RRMIVELLFAERNHVCAVCVANGNC-ELQDLAIEVGMDHVRFPYLFPKRPVDISHPRFGIDHNRCVLCTRCVRVCDEIEG 163 (236)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 9999999997276657634668874-899999985898776765467776568997467447738608779988875328
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-CCCCCCCCHHHHCCCCC
Q ss_conf 222101147889998851688843138899962286652-76766473455189978
Q gi|254781044|r 186 NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRL-YRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 186 ~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi-~~C~~C~~C~~vCPkgI 241 (259)
++ -++ -+.|- .+++-.. ..+.+.+- .+|.+||+|..+||.|-
T Consensus 164 ~~--ai~-----~~~RG-~~~~I~~------~~~~~~~~s~~C~~CG~Cv~vCPvGA 206 (236)
T PRK07569 164 AH--TWD-----VAGRG-VNSRVIA------DLNQPWGTSDACTSCGKCVQACPTGA 206 (236)
T ss_pred CC--EEE-----EECCC-CCCEEEC------CCCCCCCCCCCCCCCCCCHHCCCCHH
T ss_conf 73--688-----61479-8888836------77887444455212565342192022
No 26
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.02 E-value=2.8e-11 Score=90.27 Aligned_cols=168 Identities=21% Similarity=0.316 Sum_probs=91.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEECCCCCCCCCCCHHCCCCCEEEEECCCCEEEEEE
Q ss_conf 998642678811678999999732876388404-5677354430314361266321100004785189864898044112
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDL 125 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~iNG~~~LAC~t~~~~~~~~i~iePl~~~pVikDL 125 (259)
+++++ +|+|||++++.--- .-|.|.|.-+ =--+-|-+|-+.|||+-.-||.|.+.+ ++.|.- +-+-+||+
T Consensus 14 ~~~v~---~G~tiL~a~~~~gI-~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~d---Gm~v~t--~s~rvk~~ 84 (978)
T COG3383 14 SIEVE---EGTTILRAANRNGI-EIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVED---GMVVRT--NSERVKEA 84 (978)
T ss_pred EEECC---CCHHHHHHHHHCCC-CCCCEECCCCCCCCCCCCEEEEEECCCEECCCCCCCCC---CCEEEC--CCHHHHHH
T ss_conf 87527---87089999996598-55512236787865555368998568261321554267---828961--65889999
Q ss_pred -----------------EEEHH----HHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHH---HHHHHHHHHHHHCCCHHH
Q ss_conf -----------------45104----7999887542103466631--101112207776---544668888873131322
Q gi|254781044|r 126 -----------------VVDMS----HFYSQHRSIEPWLKTVSPK--PAKELLQSHEDR---QKIDGLYECVMCACCSTS 179 (259)
Q Consensus 126 -----------------vVD~~----~~~~~~~~~~p~~~~~~~~--~~~e~~qsped~---~~~~~~~~CI~CG~C~sa 179 (259)
|-|-. .+.+... .|=...... +.++ +-.+.|. -..++-.+||+||.|+.+
T Consensus 85 r~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~---~~gl~~q~y~y~~k~-~~~~~Des~Pfy~ydp~qCIlCgRCVea 160 (978)
T COG3383 85 RREAMDRILSNHPLYCTVCDNNNGDCELHNMVM---ALGLTEQRYPYEEKN-PPYPKDESNPFYIYDPNQCILCGRCVEA 160 (978)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH---HHCCCCCCCCCCCCC-CCCCCCCCCCEEEECCHHEEEHHHHHHH
T ss_conf 999999998638867612479998750878898---729874336766557-8887556797087562242425689999
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 82001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 180 CPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 180 CP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
|--+.++.. | .-.|+ ..|||-..... .+...-+|.+||+|++|||.+-
T Consensus 161 Cqevqv~ea--L-----~i~w~-~~~pRV~wd~~------~~i~~SSCVsCG~CvtVCP~nA 208 (978)
T COG3383 161 CQEVQVNEA--L-----TIDWR-GEDPRVIWDND------VPINESSCVSCGACVTVCPVNA 208 (978)
T ss_pred HHHHHCEEE--E-----EEECC-CCCCCEECCCC------CCCCCCCCCCCCCCCEECCHHH
T ss_conf 876413369--9-----86114-67760334789------7553012554576020156056
No 27
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.81 E-value=1.2e-09 Score=80.10 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=81.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEECC--CCCCCCCCCHHCCCCCEEEEE----------
Q ss_conf 8642678811678999999732876388404-567735443031436--126632110000478518986----------
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNIDG--TNTLACVKDMKDIKGAIAVYP---------- 115 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~iNG--~~~LAC~t~~~~~~~~i~ieP---------- 115 (259)
++++. +|+|||+|-..+.-+ =|+|-|.-. =-.|-|--|.|.|.| ++..||.|.+.+ ++.|.-
T Consensus 10 ~~~~~-~g~til~aa~~~gi~-iP~~C~~~~l~~~g~Cr~C~Vev~~~~~~~~aC~~~~~~---gm~v~t~~~~~~~~r~ 84 (777)
T PRK09129 10 KVEVP-EGSMVIEAADKAGIY-IPHFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTD---GMKVRTRSEKAVKAQK 84 (777)
T ss_pred EEEEC-CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC---CCEEEECCHHHHHHHH
T ss_conf 99969-999699999975998-775678999498985714799989984656141878899---9889949999999999
Q ss_pred ------CCCCEEEEEEEEEHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHCCCHHHCCCEEEC
Q ss_conf ------489804411245104799988754-210346663110111220777--65446688888731313228200102
Q gi|254781044|r 116 ------LPHMSVIKDLVVDMSHFYSQHRSI-EPWLKTVSPKPAKELLQSHED--RQKIDGLYECVMCACCSTSCPSYWWN 186 (259)
Q Consensus 116 ------l~~~pVikDLvVD~~~~~~~~~~~-~p~~~~~~~~~~~e~~qsped--~~~~~~~~~CI~CG~C~saCP~~~~~ 186 (259)
|.++|.= =++-|...-.+ ++.. ..|=.......+..+.....+ .--..+..+||+||.|+.+|.-+..+
T Consensus 85 ~~~e~ll~~hp~d-c~~c~~~g~c~-lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~e~~~~ 162 (777)
T PRK09129 85 SVMEFLLINHPLD-CPICDQGGECQ-LQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIAGV 162 (777)
T ss_pred HHHHHHHHCCCCC-CCCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 9999998569977-88688888768-999999868986556666667777678963562465141055788898763586
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 2210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 187 SDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 187 ~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.. ++-. .|... .++ .-..+.-+.|..||+|.++||.|-
T Consensus 163 ~~--~~~~-----------~rg~~--~~i--~~~~~~~~~~~~~G~cv~~CP~GA 200 (777)
T PRK09129 163 ME--LGMM-----------GRGEH--SEI--TTFVGKTVDSELSGNMIDLCPVGA 200 (777)
T ss_pred EE--EEEE-----------EECCC--CEE--ECCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 08--9999-----------50675--302--124798654122231565456441
No 28
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.76 E-value=1.4e-09 Score=79.87 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=90.0
Q ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEECCCC--CCC
Q ss_conf 886079999986368888887368998642678811678999999732876388404-56773544303143612--663
Q gi|254781044|r 23 GEKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNIDGTN--TLA 99 (259)
Q Consensus 23 ~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~iNG~~--~LA 99 (259)
..+.|+||.|- + ++|+|+ +|+|||+|-.+.--+ =|.|-|.-. =-.|.|--|.|.|+|.+ .-|
T Consensus 12 ~~~~mv~l~Id-------g----~~v~v~---~g~til~aa~~~Gi~-IP~fC~h~~L~~~g~CR~ClVev~g~~~~~~s 76 (809)
T PRK07860 12 PPPELVTLTID-------G----VEVSVP---KGTLVIRAAELIGIQ-IPRFCDHPLLDPVGACRQCLVEVEGQRKPLAS 76 (809)
T ss_pred CCCCCEEEEEC-------C----EEEEEC---CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 99880699999-------9----999969---999899999974998-56567999959888664528998999678806
Q ss_pred CCCCHHCCCCCEEEEECCCCEEEE--------EEEEE---------HHHHHHHHHH-HHHCCCCCCCCCCCCCCC-CHHH
Q ss_conf 211000047851898648980441--------12451---------0479998875-421034666311011122-0777
Q gi|254781044|r 100 CVKDMKDIKGAIAVYPLPHMSVIK--------DLVVD---------MSHFYSQHRS-IEPWLKTVSPKPAKELLQ-SHED 160 (259)
Q Consensus 100 C~t~~~~~~~~i~iePl~~~pVik--------DLvVD---------~~~~~~~~~~-~~p~~~~~~~~~~~e~~q-sped 160 (259)
|.|.+.| ++.|.---+-|.++ =|.++ ...--. ++. ...|=....+..+..+.. .|.+
T Consensus 77 C~tpv~~---Gm~V~T~~~s~~~~~~r~~vlE~ll~nHpldCpvCd~gGeC~-LQd~~~~~G~~~~r~~~~kr~~~~~~~ 152 (809)
T PRK07860 77 CTTTVTD---GMVVRTQLTSPVADKAQHGVMELLLINHPLDCPVCDKGGECP-LQNQAMSNGRAESRFTDVKRTFPKPIN 152 (809)
T ss_pred CCCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 1876899---988874389999999999999999857998898789889868-999999868997667776657888767
Q ss_pred --HHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCC
Q ss_conf --654466888887313132282001022210114788999885168884313889996228665276766473455189
Q gi|254781044|r 161 --RQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCP 238 (259)
Q Consensus 161 --~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCP 238 (259)
..-+.+..+||+|+.|+-.|--+..+. .+|-. .|... ..+.-..++-+.|..||+|+++||
T Consensus 153 ~~~~i~~d~~rCI~C~RCVR~c~ev~G~~--~l~~~-----------~RG~~----~~I~~~~~~~l~s~~sGncv~vCP 215 (809)
T PRK07860 153 ISAQVLLDRERCVLCARCTRFSDQIAGDP--FIELQ-----------ERGAL----QQVGIYEGEPFQSYFSGNTVQICP 215 (809)
T ss_pred CCCCEECCCCCCCCCCHHHHHHHHHCCCC--EEEEE-----------CCCCC----CCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 78742406773662818999998644874--68540-----------45775----644645898666531053665476
Q ss_pred CCC
Q ss_conf 978
Q gi|254781044|r 239 KGL 241 (259)
Q Consensus 239 kgI 241 (259)
.|.
T Consensus 216 vGA 218 (809)
T PRK07860 216 VGA 218 (809)
T ss_pred CCC
T ss_conf 220
No 29
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.74 E-value=2.2e-09 Score=78.61 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=79.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEE-------CCCCCCCCCCCHHCCCCCEEEEE-----
Q ss_conf 8642678811678999999732876388404-5677354430314-------36126632110000478518986-----
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNI-------DGTNTLACVKDMKDIKGAIAVYP----- 115 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~i-------NG~~~LAC~t~~~~~~~~i~ieP----- 115 (259)
++++. +|.|||+|..+.--+ =|.|-|.-. =-.|.|-.|.|.| .|++..||.|.+.| ++.|.-
T Consensus 10 ~~~v~-~g~til~aa~~~Gi~-IP~~C~~~~l~~~g~CR~ClVev~~~~~~~~~~~~~sC~t~v~~---Gm~V~T~s~~v 84 (858)
T PRK08166 10 EYEVN-GADNLLQACLSLGID-IPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATD---GTFISIDDEEA 84 (858)
T ss_pred EEEEC-CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC---CCEEEECCHHH
T ss_conf 99858-999699999975998-66367999989887772218997226757887647020777899---99999799999
Q ss_pred -----------CCCCEEEEE-EEEEHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHCCCHHHC
Q ss_conf -----------489804411-245104799988754-210346663110111220777--65446688888731313228
Q gi|254781044|r 116 -----------LPHMSVIKD-LVVDMSHFYSQHRSI-EPWLKTVSPKPAKELLQSHED--RQKIDGLYECVMCACCSTSC 180 (259)
Q Consensus 116 -----------l~~~pVikD-LvVD~~~~~~~~~~~-~p~~~~~~~~~~~e~~qsped--~~~~~~~~~CI~CG~C~saC 180 (259)
|.|.|. | .|-|...--. ++.. ..|=....+.....+....++ .--..+..+||+||.|+-.|
T Consensus 85 ~~~r~~~le~ll~nHpl--dCpvCd~~G~C~-LQd~~~~~g~~~~r~~~~kr~~~~~~~~p~i~~d~~rCI~C~rCvR~c 161 (858)
T PRK08166 85 KAFRASVVEWLMTNHPH--DCPVCEEGGNCH-LQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYY 161 (858)
T ss_pred HHHHHHHHHHHHHCCCC--CCCCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
T ss_conf 99999999999847997--788379888768-999888719986656777877776678975562688363575565517
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 2001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 181 PSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 181 P~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
--+..+.+ +|-.. + ..++..-...+|...|-.||+|.++||.|-
T Consensus 162 ~ei~g~~~--~~~~g-----------~----~~~~~~~~~~~~~~~s~f~Gncv~vCPvGA 205 (858)
T PRK08166 162 KDYAGGTD--LGVYG-----------A----HDNVYFGRPEDGTLESEFSGNLVEVCPTGV 205 (858)
T ss_pred HHHCCCCC--EEEEE-----------C----CCCEEECCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 86548641--23563-----------1----441364266677556613453343077554
No 30
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.62 E-value=1.3e-08 Score=73.75 Aligned_cols=169 Identities=12% Similarity=0.152 Sum_probs=77.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEECCC---CCCCCCCCHHCCCCCEEEEEC--------
Q ss_conf 8642678811678999999732876388404-5677354430314361---266321100004785189864--------
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNIDGT---NTLACVKDMKDIKGAIAVYPL-------- 116 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~iNG~---~~LAC~t~~~~~~~~i~iePl-------- 116 (259)
+++++ +|+|||+|-...--+ =|.|-|--. =-.|.|--|.|.|.|. +.-||.|.+.+ +++|.--
T Consensus 10 ~~~v~-~g~til~A~~~~Gi~-IP~fCyh~~L~~~g~CR~ClVeve~~~pk~v~sC~t~v~~---gm~v~t~s~~v~~~r 84 (680)
T PRK09130 10 EIEVP-DGYTLLQACEAAGAE-IPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGE---GMVIKTNTPMVKKAR 84 (680)
T ss_pred EEEEC-CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC---CCEEEECCHHHHHHH
T ss_conf 99969-999699999975998-5625689994989855156999739968767310877899---999997999999999
Q ss_pred --------CCCEEEEEEEEEHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHCCCHHHCCCEEE
Q ss_conf --------8980441124510479998875-4210346663110111220777--6544668888873131322820010
Q gi|254781044|r 117 --------PHMSVIKDLVVDMSHFYSQHRS-IEPWLKTVSPKPAKELLQSHED--RQKIDGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 117 --------~~~pVikDLvVD~~~~~~~~~~-~~p~~~~~~~~~~~e~~qsped--~~~~~~~~~CI~CG~C~saCP~~~~ 185 (259)
-|+|. -=.|-|...--+ ++. ...|=....+..+.-+....++ .--..+..+||+|+.|+-.|--+..
T Consensus 85 ~~vle~ll~nHPl-DCpiCd~~GeC~-LQd~~~~~g~~~~r~~~~kr~~~~~~~gp~i~~~~~rCI~C~RCVR~~~ev~g 162 (680)
T PRK09130 85 EGVMEFLLINHPL-DCPICDQGGECD-LQDQAMAYGVDTSRFHENKRAVEDKYMGPLVKTAMTRCIHCTRCVRFATEVAG 162 (680)
T ss_pred HHHHHHHHHCCCC-CCCCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHCCCC
T ss_conf 9999999837997-798678888777-99999986899765676676776556896243053204225446777640368
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 22210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 186 NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 186 ~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.. .+|-. .|... .++---.+..+.+-.||+|.++||.|-
T Consensus 163 ~~--~lg~~-----------~RG~~----~~i~t~~~~~~~se~sGn~idvCPvGA 201 (680)
T PRK09130 163 VP--ELGAI-----------GRGED----MEITTYLEQALTSELSGNVIDLCPVGA 201 (680)
T ss_pred CC--EEEEE-----------CCCCC----CCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 75--57553-----------03665----676755578777644533232066444
No 31
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.62 E-value=4.4e-08 Score=70.46 Aligned_cols=71 Identities=23% Similarity=0.503 Sum_probs=50.3
Q ss_pred HHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHH
Q ss_conf 88873131322820010222101147889998851688843138899962286652767664734551899788899999
Q gi|254781044|r 169 ECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIA 248 (259)
Q Consensus 169 ~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~ 248 (259)
.||.||.|+.+||++ |-|..+....+. +...+++ .+.+..|..||.|..+||.+|++...+.
T Consensus 366 sCi~C~~C~d~CP~~-------Llp~ql~~~a~~-----~~~~e~~------~~~l~dCIECg~Ca~vCPs~iplvq~~r 427 (529)
T COG4656 366 SCIRCSLCADACPVN-------LLPQQLYWFAKG-----EQHDEEE------EHNLLDCIECGACAYVCPSNIPLVQYFR 427 (529)
T ss_pred CCCCHHHHHHHCCCC-------CCHHHHHHHHHH-----HHHHHHH------HHHHHHHHHHCCCHHCCCCCCCHHHHHH
T ss_conf 150477787747512-------588886677654-----2456888------8776652550731100777788899999
Q ss_pred HHHHHHHHC
Q ss_conf 999999861
Q gi|254781044|r 249 KIKMMLLDR 257 (259)
Q Consensus 249 ~LRr~~v~r 257 (259)
..+..+...
T Consensus 428 ~~Ka~i~~~ 436 (529)
T COG4656 428 QEKAEILAQ 436 (529)
T ss_pred HHHHHHHHH
T ss_conf 999999863
No 32
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.52 E-value=5.9e-08 Score=69.67 Aligned_cols=159 Identities=18% Similarity=0.320 Sum_probs=85.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEECC--CCCCCCCCCHHCCCCCEEEEECCCCEEEEEE
Q ss_conf 86426788116789999997328763884045-67735443031436--1266321100004785189864898044112
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNIDG--TNTLACVKDMKDIKGAIAVYPLPHMSVIKDL 125 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iNG--~~~LAC~t~~~~~~~~i~iePl~~~pVikDL 125 (259)
++++++ |.|||+|....--+ =|.|-|-..| -.|-|.-|.|.|+| ++.-+|.|++.+ +++|.
T Consensus 10 ei~v~~-g~tvLqAa~~aGi~-IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~d---GM~I~----------- 73 (693)
T COG1034 10 EIEVPE-GETVLQAAREAGID-IPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTD---GMVIS----------- 73 (693)
T ss_pred EEECCC-CCHHHHHHHHCCCC-CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC---CEEEE-----------
T ss_conf 986189-72899999985998-772103578874453257799966888625301650678---81885-----------
Q ss_pred EEEHHHHHHHHHHHHHCCCCCCC-------CCCCCCCC---------------------CHHHHHHH-HHHHHHHHHCCC
Q ss_conf 45104799988754210346663-------11011122---------------------07776544-668888873131
Q gi|254781044|r 126 VVDMSHFYSQHRSIEPWLKTVSP-------KPAKELLQ---------------------SHEDRQKI-DGLYECVMCACC 176 (259)
Q Consensus 126 vVD~~~~~~~~~~~~p~~~~~~~-------~~~~e~~q---------------------sped~~~~-~~~~~CI~CG~C 176 (259)
.+.+...+..+.+.-|+-.--| ..+.-.+| .+.-...+ .+..+||.|+.|
T Consensus 74 -T~s~~vk~~R~~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~dm~RCI~C~RC 152 (693)
T COG1034 74 -TNSEEVKKAREGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYDMNRCILCTRC 152 (693)
T ss_pred -CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEECHHH
T ss_conf -2899999999999999981699878856899975367889983877543433454323334431321002401341666
Q ss_pred HHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 32282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 177 STSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 177 ~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+-.|--+.... .+| ++ .|.... ..---.++.+.=..||+|+++||.|.
T Consensus 153 VR~c~eiaG~~--~l~---------~~--~rg~~~----~i~t~~~~~l~se~cGncv~vCPvGA 200 (693)
T COG1034 153 VRFCKEIAGTH--ELG---------VI--KRGENS----EIGTYLDQPLESELCGNCVDVCPVGA 200 (693)
T ss_pred HHHHHHHCCCC--CCC---------EE--ECCCCC----EEECCCCCCCCCCCCCCEEEECCCCC
T ss_conf 77666406862--001---------01--068872----24022466422111566225465323
No 33
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=98.44 E-value=2.5e-07 Score=65.78 Aligned_cols=77 Identities=25% Similarity=0.420 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 65446688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 161 RQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 161 ~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
.+..+.+.+|..||-|.-+||.... -|-++..|.. .| -.-|..+.+ .|..|+.|+++||++
T Consensus 395 ~e~~~~a~~Ct~C~~C~~~CPn~l~------I~eam~~a~~-----gd---ls~l~~l~d-----~CigCgrCE~~C~k~ 455 (779)
T PRK00941 395 EELKELAKKCTECGWCVRACPNELP------IPEAMEAAAK-----GD---LSKLADLYD-----VCIGCGRCEQVCPKN 455 (779)
T ss_pred HHHHHHHHHCCCCCHHHHHCCCCCC------HHHHHHHHHC-----CC---CHHHHHHHH-----HHHHHHHHHHHCCCC
T ss_conf 9999999864323226653988686------2789998860-----78---078899988-----620020187754468
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8889999999999986
Q gi|254781044|r 241 LNPAKAIAKIKMMLLD 256 (259)
Q Consensus 241 I~~~~~I~~LRr~~v~ 256 (259)
|++.+.|...-+..++
T Consensus 456 ipI~~~i~~Aa~~~i~ 471 (779)
T PRK00941 456 IPILSMIEKAAQHKIK 471 (779)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8558899998899863
No 34
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=98.43 E-value=2.9e-07 Score=65.43 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 76544668888873131322820010222101147889998851688843138899962286652767664734551899
Q gi|254781044|r 160 DRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK 239 (259)
Q Consensus 160 d~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk 239 (259)
+.+..+.+.+|..||-|.-+||.... -|-++..+.. .| -.-|..+.+ .|..|+.|+++||+
T Consensus 357 ~~e~~~~a~~Ct~C~~C~~~CPn~l~------I~eam~~a~~-----gd---ls~l~~l~d-----~CvgCgrCE~~C~k 417 (731)
T cd01916 357 DEEFQELAAKCTDCGWCTRACPNSLR------IKEAMEAAKE-----GD---FSGLADLFD-----QCVGCGRCEQECPK 417 (731)
T ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCC------HHHHHHHHHC-----CC---CHHHHHHHH-----HHHHHHHHHHHCCC
T ss_conf 89999999865323226654988686------3889998760-----78---078899988-----62002018775446
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 78889999999999986
Q gi|254781044|r 240 GLNPAKAIAKIKMMLLD 256 (259)
Q Consensus 240 gI~~~~~I~~LRr~~v~ 256 (259)
+|++.+.|...-+..++
T Consensus 418 ~ipI~~~i~~Aa~~~i~ 434 (731)
T cd01916 418 EIPIINMIEKAARERIK 434 (731)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 88558899998999863
No 35
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=98.39 E-value=3.5e-07 Score=64.87 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 07776544668888873131322820010222101147889998851688843138899962286652767664734551
Q gi|254781044|r 157 SHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQS 236 (259)
Q Consensus 157 sped~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~v 236 (259)
.|.+-+..+.+.+|..||-|.-+||... --|-++..|.. ..-..|+.+.+ .|..|+.|..+
T Consensus 389 ~p~~ee~~e~a~kc~~cG~C~~~CP~~l------~i~eam~~A~~--------Gd~~~l~~l~d-----~C~~C~rCEq~ 449 (772)
T COG1152 389 KPDDEEFMEYARKCTYCGNCMRACPNEL------DIPEAMEYAAK--------GDFSKLEDLHD-----VCIGCGRCEQV 449 (772)
T ss_pred CCCHHHHHHHHHHCCCCCCHHCCCCCCC------CHHHHHHHHHC--------CCHHHHHHHHH-----HHHHHHHHHHH
T ss_conf 9976899999986654452110397546------64778887651--------77577788887-----74311036551
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 89978889999999999986
Q gi|254781044|r 237 CPKGLNPAKAIAKIKMMLLD 256 (259)
Q Consensus 237 CPkgI~~~~~I~~LRr~~v~ 256 (259)
||++|++...|.+.-+..++
T Consensus 450 Cpk~ipi~nm~~~a~~~~~~ 469 (772)
T COG1152 450 CPKNIPILNMIEKAAQKRIK 469 (772)
T ss_pred CCCCCCHHHHHHHHHHHHHH
T ss_conf 76567423578788887655
No 36
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.30 E-value=4.8e-07 Score=64.03 Aligned_cols=59 Identities=27% Similarity=0.582 Sum_probs=45.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC------------------CCCCCCCCCCHHCC
Q ss_conf 899864267881167899999973287638840456773544303143------------------61266321100004
Q gi|254781044|r 46 DTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNID------------------GTNTLACVKDMKDI 107 (259)
Q Consensus 46 ~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iN------------------G~~~LAC~t~~~~~ 107 (259)
+.+++++++ +.|+|+++.+ + . +.+.++|+.|.||+|.++|+ +..+|||++++.+
T Consensus 8 ~~~~~~v~~-~~tlL~~~~~-~-g----i~~~~~C~~G~CgtC~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~- 79 (84)
T cd00207 8 SGVEVEVPE-GETLLDAARE-A-G----IDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTD- 79 (84)
T ss_pred CEEEEEECC-CCCHHHHHHH-C-C----CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCEEEEEECEECC-
T ss_conf 638999897-9729999998-4-9----996613079856889789978827467554568778628879841398888-
Q ss_pred CCCEEEE
Q ss_conf 7851898
Q gi|254781044|r 108 KGAIAVY 114 (259)
Q Consensus 108 ~~~i~ie 114 (259)
.++|+
T Consensus 80 --d~~ie 84 (84)
T cd00207 80 --GLVIE 84 (84)
T ss_pred --CEEEC
T ss_conf --81889
No 37
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=98.26 E-value=6.3e-07 Score=63.29 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH-CCCCCCCCCCCCCCHHHHCC
Q ss_conf 76544668888873131322820010222101147889998851688843138899962-28665276766473455189
Q gi|254781044|r 160 DRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNL-EDPFRLYRCHTIMNCTQSCP 238 (259)
Q Consensus 160 d~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l-~~~~gi~~C~~C~~C~~vCP 238 (259)
+-+.++.+.+|.+||-|.-+||...--. -++.+|. +.-|-. .|..+ .+ .|..||.|+.+||
T Consensus 400 ~~~~~E~a~~CT~Cg~C~~~CP~~l~v~------~am~~A~----~tGd~s---kL~~~~~~-----~C~aCgrCEq~Cp 461 (795)
T TIGR00314 400 EEELMELAKKCTQCGNCTRACPNSLRVK------EAMAKAE----KTGDLS---KLEELLEE-----VCYACGRCEQVCP 461 (795)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHH------HHHHHHH----HCCCHH---HHHHHHHH-----HCCCCCCCHHCCC
T ss_conf 7899999983678877544587865179------9999997----348866---89999998-----4455675130278
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 978889999999999986
Q gi|254781044|r 239 KGLNPAKAIAKIKMMLLD 256 (259)
Q Consensus 239 kgI~~~~~I~~LRr~~v~ 256 (259)
++|++.+.+.+.....+.
T Consensus 462 knipIv~m~~~a~~~~~~ 479 (795)
T TIGR00314 462 KNIPIVSMVTKAGEDRLK 479 (795)
T ss_pred CCCCEEEHHHHHHHHHHH
T ss_conf 988245132466477754
No 38
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=98.21 E-value=2e-06 Score=60.21 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=51.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEECC
Q ss_conf 998642678811678999999732876388404567735443031436126632110000478--51898648
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPLP 117 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl~ 117 (259)
.|+++++ +++++||.|+. . +-.+-+.+|.+|.||+|++.|||+++.+|.+.+..+++ ..|||=|.
T Consensus 17 ~~~~~~~-p~~~Ll~~LR~----~-gltg~K~GC~~G~CGaCTVlvdG~~v~SCl~~a~~~~G~~I~TiEGl~ 83 (159)
T PRK09908 17 PFQLHAA-PGTPLSELLRE----Q-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEA 83 (159)
T ss_pred EEEEECC-CCCCHHHHHHH----C-CCCCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHCCCCEEEEECCCC
T ss_conf 9898579-99999999985----8-797787642785898868998992973548759873997899862576
No 39
>PRK11433 putative xanthine dehydrogenase iron-sulfur-binding subunit; Provisional
Probab=98.18 E-value=6.3e-06 Score=57.11 Aligned_cols=77 Identities=22% Similarity=0.427 Sum_probs=56.3
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 60799999863688888873689986426788116789999997328763884045677354430314361266321100
Q gi|254781044|r 25 KNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDM 104 (259)
Q Consensus 25 ~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~ 104 (259)
...|+|.|- + +.+++++++ ..|+||+|+.--. + -.-..+|.+|.||+|.|.|||+++.+|.+..
T Consensus 49 ~~~v~l~VN-------G----~~~~~~vdp-~ttLLd~LRe~Lg-L---TGtK~GC~~G~CGACTVlvDG~~v~SCl~la 112 (217)
T PRK11433 49 ISPVTFKVN-------G----KTEQLELDT-RTTLLDALREHLH-L---TGTKKGCDHGQCGACTVLVNGRRLNACLTLA 112 (217)
T ss_pred CCEEEEEEC-------C----EEEEEECCC-CCCHHHHHHHHCC-C---CCCCCCCCCCCCCCCEEEECCCEEECCCCHH
T ss_conf 630799999-------9----997874389-8889999998639-9---7568888997788988999982833640748
Q ss_pred HCCCC--CEEEEECC
Q ss_conf 00478--51898648
Q gi|254781044|r 105 KDIKG--AIAVYPLP 117 (259)
Q Consensus 105 ~~~~~--~i~iePl~ 117 (259)
....+ ..|||=|.
T Consensus 113 ~~~~G~~ItTIEGL~ 127 (217)
T PRK11433 113 VMHQGAEITTIEGLG 127 (217)
T ss_pred HHCCCCEEEEEECCC
T ss_conf 762897799852347
No 40
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=98.11 E-value=3.7e-06 Score=58.57 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=51.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEECC
Q ss_conf 998642678811678999999732876388404567735443031436126632110000478--51898648
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPLP 117 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl~ 117 (259)
.++++++ +++++||.|+.-.. --.-+.+|.+|.||+|++.|||+++.+|.+.+...++ ..|||=|.
T Consensus 10 ~~~~~v~-~~~~Lld~LR~~lg----ltgtK~GC~~G~CGACTVlvdG~~v~SCl~~a~~~~g~~I~TvEGl~ 77 (148)
T TIGR03193 10 WREDAVA-DNMLLVDYLRDTVG----LTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLA 77 (148)
T ss_pred EEEEECC-CCCCHHHHHHHCCC----CCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 9885379-98999999873069----96058885888887748999991855028479985893699742446
No 41
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=98.02 E-value=4.8e-06 Score=57.83 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=51.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEECC
Q ss_conf 998642678811678999999732876388404567735443031436126632110000478--51898648
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPLP 117 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl~ 117 (259)
.++++++ +++++||.|+.- . +--.-+.+|.+|.||+|++.|||+++.+|.+....+++ ..|||=|.
T Consensus 12 ~~~~~~~-~~~~Ll~~LR~~---l-gltgtK~GC~~G~CGACTVlvdG~~v~SCl~~a~~~~G~~I~TvEGl~ 79 (151)
T TIGR03198 12 AWEVAAV-PTTRLSDLLRKE---L-QLTGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIA 79 (151)
T ss_pred EEEEECC-CCCCHHHHHHHC---C-CCCCCCCCCCCCCCCCCEEEECCCEEEEHHHHHHHHCCCEEEECCCCC
T ss_conf 9897379-998899999730---7-996678651887999618998993987306339873897899604456
No 42
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=97.90 E-value=8e-06 Score=56.46 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=54.9
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCHHHHCCCCCCHH
Q ss_conf 888887313132282001022210114788999885168884313889996228665276766--473455189978889
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHT--IMNCTQSCPKGLNPA 244 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~--C~~C~~vCPkgI~~~ 244 (259)
.+.||.||.|..+||.- +-|..|.++.. ..| ++.+. ..|++.|.. |+.|+.|||..++..
T Consensus 373 ~Ra~I~~g~~e~v~P~d-------i~P~qL~ka~~----~~d------~e~~e-~lGi~e~~eED~alcsyvCpSK~e~~ 434 (448)
T PRK05352 373 ERAMVPIGNYERVMPLD-------ILPTLLLRALI----AGD------TDEAQ-ALGALELDEEDLALCTFVCPGKYEYG 434 (448)
T ss_pred CCCEEECCHHHHHCCCC-------CCHHHHHHHHH----CCC------HHHHH-HCCCCCCCHHHCCEEEEECCCHHHHH
T ss_conf 44378867476427885-------68999999987----069------99998-75990338536414645888612489
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999861
Q gi|254781044|r 245 KAIAKIKMMLLDR 257 (259)
Q Consensus 245 ~~I~~LRr~~v~r 257 (259)
..|.+.-..+.+.
T Consensus 435 ~i~r~~L~~~~kE 447 (448)
T PRK05352 435 PILRDCLDRIEKE 447 (448)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999764
No 43
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=97.82 E-value=2.9e-06 Score=59.22 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCHHHCC--CEEECC----CCCCCHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf 6888887313132282--001022----210114788999885168884313--88999622866527676647345518
Q gi|254781044|r 166 GLYECVMCACCSTSCP--SYWWNS----DRYLGPAILLQAYRWLIDSRDEFQ--GERLDNLEDPFRLYRCHTIMNCTQSC 237 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP--~~~~~~----~~flGP~~l~~a~r~~~D~rD~~~--~erl~~l~~~~gi~~C~~C~~C~~vC 237 (259)
+..+||.||+|+-+|+ |+...+ .+++.|.. |..|... .+|+-++... -.+|.-|++|..||
T Consensus 19 D~~kCIGCGRCfKVCgr~Vl~L~G~~EeGE~V~~~~---------de~d~dDdE~~rkvM~~~~--~~~CIGC~AC~rVC 87 (96)
T TIGR02936 19 DQEKCIGCGRCFKVCGRDVLTLKGINEEGELVDPSD---------DEEDDDDDEIERKVMVLAN--PGNCIGCGACARVC 87 (96)
T ss_pred CHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC---------CCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCC
T ss_conf 431075454631417867642221246785763888---------8733468873442777428--77850423477056
Q ss_pred CCCC
Q ss_conf 9978
Q gi|254781044|r 238 PKGL 241 (259)
Q Consensus 238 PkgI 241 (259)
||+=
T Consensus 88 Pk~C 91 (96)
T TIGR02936 88 PKKC 91 (96)
T ss_pred CCCC
T ss_conf 8863
No 44
>CHL00134 petF ferredoxin; Validated
Probab=97.78 E-value=3.7e-05 Score=52.34 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=32.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCCC
Q ss_conf 998642678811678999999732876388404567735443031-43612
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGTN 96 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~~ 96 (259)
++.+++. ++.|||+++.+. -+.+-++||+|.||+|.++ +.|+.
T Consensus 16 ~~t~~v~-~~etiL~aa~~~------Gi~lp~~Cr~G~CgtC~~~l~~G~V 59 (99)
T CHL00134 16 DVTIDCP-DDQYILDAAEEQ------GIDLPYSCRAGACSTCAGKVTEGTV 59 (99)
T ss_pred EEEEEEC-CCCCHHHHHHHC------CCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 8999939-898099999885------9997866788069988449988248
No 45
>PRK05713 hypothetical protein; Provisional
Probab=97.72 E-value=2.7e-05 Score=53.19 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=42.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCCC-----------------CCCCCCCHHCCC
Q ss_conf 998642678811678999999732876388404567735443031-43612-----------------663211000047
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGTN-----------------TLACVKDMKDIK 108 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~~-----------------~LAC~t~~~~~~ 108 (259)
...+++. +|.|||+++.+- -+.+.|+||.|.||+|-++ +.|.. +|+|+++...
T Consensus 8 ~~~f~~~-~getlL~aal~~------gi~lp~~C~~G~CgtCk~~l~~G~v~~~~~~~l~~~~~~~g~~L~Cq~~~~s-- 78 (312)
T PRK05713 8 ERRWTVP-TGSNLLDALNAA------GVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVG-- 78 (312)
T ss_pred CEEEEEC-CCCHHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCEEEEECCEECC--
T ss_conf 9899958-998399999985------9986276969068036779998853246567699779848858840589897--
Q ss_pred CCEEEEE
Q ss_conf 8518986
Q gi|254781044|r 109 GAIAVYP 115 (259)
Q Consensus 109 ~~i~ieP 115 (259)
.++||+
T Consensus 79 -D~~ie~ 84 (312)
T PRK05713 79 -DLRVEV 84 (312)
T ss_pred -CEEEEE
T ss_conf -659985
No 46
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=97.71 E-value=3.6e-06 Score=58.58 Aligned_cols=59 Identities=27% Similarity=0.534 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC-CCH
Q ss_conf 6688888731313228200102221011478899988516888431388999622866527676647345518997-888
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG-LNP 243 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg-I~~ 243 (259)
.+..+||.||.|..+||+-...- ..|... ..+.-.+ ...+|+.||.|+++||.+ |..
T Consensus 35 ~d~ekCigC~~C~~~CP~~AI~~---------------~~~~~~---~~~~~~i----d~~rCifCG~C~evCPt~AI~l 92 (178)
T PRK12387 35 YNPQQCIGCAACVNACPSNALTV---------------ETDLAT---GELAWQF----NLGRCIFCGRCEEVCPTAAIKL 92 (178)
T ss_pred CCCHHCCCHHHHHHHCCCCCCEE---------------EECCCC---CCEEEEE----CCCCCCCCCHHHHHCCCCCCCC
T ss_conf 78311628479996586312875---------------404778---8357886----3040668671566688242233
Q ss_pred HH
Q ss_conf 99
Q gi|254781044|r 244 AK 245 (259)
Q Consensus 244 ~~ 245 (259)
+.
T Consensus 93 t~ 94 (178)
T PRK12387 93 SQ 94 (178)
T ss_pred CH
T ss_conf 61
No 47
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=97.70 E-value=9e-05 Score=49.93 Aligned_cols=81 Identities=26% Similarity=0.463 Sum_probs=50.5
Q ss_pred HHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHH--HHCCCCCCCHHHHHHHHCCC--------CCCCCCCCCCCHHHHCC
Q ss_conf 888731313228200102221011478899988--51688843138899962286--------65276766473455189
Q gi|254781044|r 169 ECVMCACCSTSCPSYWWNSDRYLGPAILLQAYR--WLIDSRDEFQGERLDNLEDP--------FRLYRCHTIMNCTQSCP 238 (259)
Q Consensus 169 ~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r--~~~D~rD~~~~erl~~l~~~--------~gi~~C~~C~~C~~vCP 238 (259)
.|+.|..|.. ||.- .| -|..| +.|. ...|.-+.+ .-+...+... .....|+.||.|.+.||
T Consensus 294 ~Ct~C~yC~P-CP~g-In-----IP~~f-~lyN~~~~~~~~~~~-~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CP 364 (391)
T COG1453 294 PCTGCRYCLP-CPSG-IN-----IPEIF-RLYNLAVAFDDVDYA-KFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCP 364 (391)
T ss_pred CCCCCCCCCC-CCCC-CC-----HHHHH-HHHHHHHHHCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 9862541476-9888-77-----68899-998888862450235-88999984567567887442245634331533499
Q ss_pred CCCCHHHHHHHHHHHHHHCC
Q ss_conf 97888999999999998612
Q gi|254781044|r 239 KGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 239 kgI~~~~~I~~LRr~~v~rk 258 (259)
.+|++.....+.++.+-.+.
T Consensus 365 q~l~Ip~~Lk~v~~~leg~~ 384 (391)
T COG1453 365 QHLDIPELLKEVHEELEGED 384 (391)
T ss_pred CCCCHHHHHHHHHHHHCCHH
T ss_conf 75867899999999961057
No 48
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.68 E-value=6.1e-06 Score=57.17 Aligned_cols=60 Identities=23% Similarity=0.509 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+..+||.|+.|..+||+-...-+ +. .....+..++..- + -.+..|+.||.|+|+||.+-
T Consensus 59 ~~~dkCI~C~~C~~vCP~~~i~Vd-----------~~----~~~~~~kK~~~~y-~-ID~grCIFCG~CvEaCPtdA 118 (173)
T CHL00014 59 FEFDKCIACEVCVRVCPIDLPVVD-----------WK----LETDIRKKRLLNY-S-IDFGICIFCGNCVEYCPTNC 118 (173)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEEC-----------CC----CCCCCCCCEEEEE-E-ECCCCCCCCCCCCCCCCCCC
T ss_conf 584117244369865977761633-----------55----6788885011467-7-56162130367110178680
No 49
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.65 E-value=6.2e-06 Score=57.13 Aligned_cols=56 Identities=23% Similarity=0.511 Sum_probs=33.5
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCC--CCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888887313132282001022210114788999885168884--313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRD--EFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD--~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
-..||.|+.|..+||+-... +..+++. ..+....-.+ ...+|+.||.|+++||.+-
T Consensus 54 ~~~CIgC~lCa~iCP~~aI~---------------m~~~~~~~~g~~~~~~~~I----n~grCIfCg~C~e~CPt~A 111 (172)
T COG1143 54 RDKCIGCGLCANICPANAIT---------------METAERKVDGRKKPKRPDI----NLGRCIFCGLCVEVCPTGA 111 (172)
T ss_pred CCCCCCHHHHHHHCCCCCEE---------------EEECCCCCCCCCCCCCCEE----CCCCCCCCCCHHHHCCHHH
T ss_conf 35782616888639847318---------------9976567888421334314----3351261175142396656
No 50
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.64 E-value=6.1e-05 Score=50.97 Aligned_cols=67 Identities=24% Similarity=0.441 Sum_probs=51.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEECCC
Q ss_conf 89986426788116789999997328763-88404567735443031436126632110000478--518986489
Q gi|254781044|r 46 DTYYVDLDNCGPMVLDGLLYIKNKIDPTL-TLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPLPH 118 (259)
Q Consensus 46 ~~y~v~~~~~~~tvld~L~~ik~~~D~sl-~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl~~ 118 (259)
+.++++++ +++++|++|+.--. | .-.++|-.|.||+|.+.+||+++.+|.+......+ ..|||=|..
T Consensus 11 ~~~~~~~~-p~~~Ll~~LRd~l~-----ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~~ 80 (156)
T COG2080 11 EPVELDVD-PRTPLLDVLRDELG-----LTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLAK 80 (156)
T ss_pred EEEEEEEC-CCCHHHHHHHHHCC-----CCCCCCCCCCCCCCCEEEEECCEEEHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 58899758-99829999998528-----877677888723795099999958417889999957985997422267
No 51
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.59 E-value=5.3e-06 Score=57.56 Aligned_cols=57 Identities=23% Similarity=0.452 Sum_probs=33.2
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..+||.||.|..+||+-...=...- ++ +.. +.....+ -.+.+|+.||.|+++||.+-
T Consensus 57 ~ekCi~C~lC~~~CP~~~I~i~~~~-------------~~-~g~---k~~~~~~-Id~~rCifCGlCve~CP~~A 113 (172)
T PRK05888 57 EERCIACKLCEAICPANAITIEAAE-------------RE-DGR---RRTTRYD-INFGRCIFCGFCEEACPTDA 113 (172)
T ss_pred CEECCCCCCHHHHCCCCCCEEEEEC-------------CC-CCC---EEEEEEE-ECCCCCCCCCCCCCCCCCCC
T ss_conf 7403577655655887767898750-------------89-985---7745777-53460578888221088872
No 52
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I; InterPro: IPR010226 This entry represents the I subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain 'I' subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=97.59 E-value=5.3e-06 Score=57.55 Aligned_cols=62 Identities=21% Similarity=0.451 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 688888731313228200102221011478899988516-888431388999622866527676647345518997
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLI-DSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~-D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
...+||.|..|..+||+....= ..++-.. .|-+.. ..|+. -.+- .+.+|+.||.|+|+||.+
T Consensus 42 G~e~CiaC~LC~~~CP~~~I~~----------~~~~~~~enPv~~g-~r~~~-~y~I-n~grCifCGlC~E~CP~~ 104 (129)
T TIGR01971 42 GEEKCIACELCARVCPADAIRV----------VTEERETENPVEDG-KRRLK-FYQI-NFGRCIFCGLCEEACPTD 104 (129)
T ss_pred CCCEEECCCCEEECCCCCCCEE----------EECCCCCCCCCCCC-CCCCC-CCCC-CCEEEEEEECCCCCCCCH
T ss_conf 9713564301000075444156----------52038888873236-52378-9621-321222330751127101
No 53
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.59 E-value=6e-05 Score=51.04 Aligned_cols=53 Identities=32% Similarity=0.693 Sum_probs=39.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCC-------------------CCCCCCCCHHC
Q ss_conf 998642678811678999999732876388404567735443031-4361-------------------26632110000
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGT-------------------NTLACVKDMKD 106 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~-------------------~~LAC~t~~~~ 106 (259)
++++++. ++.|||||+.+- .+.+.|+||.|.||+|-.+ +.|. .+|||++....
T Consensus 14 ~~~~~~~-~~etiL~aal~~------Gi~lp~~C~~G~Cg~Ck~~~~~G~v~~~~~~~~~l~~~e~~~g~~L~Cq~~~~s 86 (340)
T PRK11872 14 TLFIPVN-HDELLLDAALRQ------GINLPLDCREGVCGTCQGRCETGIYSQDYVDEDALSERDLEQRKMLACQTRVKS 86 (340)
T ss_pred EEEEEEC-CCCHHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCHHHHHCCEEEEEECEECC
T ss_conf 7999838-999399999976------998637899967613878999884002666535489779855908986378777
No 54
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family; InterPro: IPR011886 Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.; GO: 0005506 iron ion binding, 0006118 electron transport.
Probab=97.57 E-value=1.1e-05 Score=55.63 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+-.+|-.||.|..+||.-+ ++..+.+ +..|.. ++.. .+.+ .+|++||.|-||||.++
T Consensus 201 ~~~~~C~~Cm~C~~vCpEp~----------VL~~~~k---~~~~~~-~~s~-~V~S----gdC~~CGRCIDVC~~~v 258 (263)
T TIGR02163 201 SDREKCTNCMDCFNVCPEPQ----------VLRMPLK---KEEDAK-GGST-LVLS----GDCINCGRCIDVCAEDV 258 (263)
T ss_pred CCHHCCCCCCCCCCCCCCHH----------HCCCCCC---CCCCCC-CCCC-EEEC----CCCCCCCCEEEECCCCC
T ss_conf 02322687757760158520----------1250006---755556-7982-3666----24156676124427662
No 55
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=97.56 E-value=5.1e-06 Score=57.68 Aligned_cols=68 Identities=18% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCHHHCCCEE-----ECCCCC-CCHHHHHHHHHHHCCCCCCC-HHHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf 66888887313132282001-----022210-11478899988516888431-388999622866527676647345518
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYW-----WNSDRY-LGPAILLQAYRWLIDSRDEF-QGERLDNLEDPFRLYRCHTIMNCTQSC 237 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~-----~~~~~f-lGP~~l~~a~r~~~D~rD~~-~~erl~~l~~~~gi~~C~~C~~C~~vC 237 (259)
+....||+||-|.-+||=.. .++++- --|..|. ..|.+... ..-+..+-.+ .-.||.|++|+++|
T Consensus 696 W~~d~CiqCnqCa~VCPHaaIR~~l~~~ee~~~AP~~F~-----~~d~kGK~~~g~kyrIQvs---~~DCtGCglCvd~C 767 (1194)
T TIGR02176 696 WKSDNCIQCNQCAFVCPHAAIRPFLLDEEELEKAPEGFK-----SLDAKGKELEGLKYRIQVS---VEDCTGCGLCVDIC 767 (1194)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCE-----EECCCCCCCCCCCEEEEEC---CCCCCCCCCCCCCC
T ss_conf 565665347885433764787776427157635898647-----7134367889870068742---75035763420358
Q ss_pred CCC
Q ss_conf 997
Q gi|254781044|r 238 PKG 240 (259)
Q Consensus 238 Pkg 240 (259)
|..
T Consensus 768 Pa~ 770 (1194)
T TIGR02176 768 PAK 770 (1194)
T ss_pred CCC
T ss_conf 588
No 56
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.52 E-value=1.1e-05 Score=55.51 Aligned_cols=54 Identities=20% Similarity=0.453 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+..+|+.|+.|+.+||.-.. +.|... ..+.. ..+. -..|++||+|.++||.+.
T Consensus 221 ~~~~~C~~C~~C~~VCP~~~v-----ir~~l~---------~~~~~-----~~v~----~~eCI~CG~CIDvC~~~a 274 (287)
T PRK09477 221 HDREKCTRCMDCFHVCPEPQV-----LRPPLK---------GKQSS-----PQVL----SGDCTTCGRCIDVCSEDV 274 (287)
T ss_pred CCCCCCCCCCHHHHHCCCCCC-----CCHHHC---------CCCCC-----CCCC----CCCCCCHHHHHHHHCCCC
T ss_conf 788758092357675799542-----444431---------44446-----8848----831053659996718155
No 57
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.51 E-value=9.9e-06 Score=55.87 Aligned_cols=58 Identities=24% Similarity=0.520 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC-CCH
Q ss_conf 6688888731313228200102221011478899988516888431388999622866527676647345518997-888
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG-LNP 243 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg-I~~ 243 (259)
.+..+||.||+|..+||+-...- ..|..+. .|.-.+ -+.+|+.||.|+++||.+ |..
T Consensus 35 ~d~ekCIgC~~C~~~CP~~AI~~---------------~~d~~~~---~r~~~i----d~grCIfCG~C~EvCPt~AI~l 92 (181)
T PRK08222 35 LMPSQCIACGACACACPANALTI---------------QTDDQQN---SRTWQL----YLGRCIYCGRCEEVCPTRAIQL 92 (181)
T ss_pred CCHHHCCCHHHHHHHCCCCCCEE---------------EECCCCC---CEEEEE----CCCCCCCCCHHHHHCCCCCCCC
T ss_conf 68101845328987586026687---------------6226788---568885----2661678772441488142067
Q ss_pred H
Q ss_conf 9
Q gi|254781044|r 244 A 244 (259)
Q Consensus 244 ~ 244 (259)
+
T Consensus 93 t 93 (181)
T PRK08222 93 T 93 (181)
T ss_pred C
T ss_conf 7
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.48 E-value=6.9e-05 Score=50.66 Aligned_cols=165 Identities=21% Similarity=0.335 Sum_probs=82.9
Q ss_pred CEEEEECCCCCCCCCCEEEECCCCCCCCCC----------------CHHCCC-----CCEEEEECCCCEEEEEEEEEHHH
Q ss_conf 638840456773544303143612663211----------------000047-----85189864898044112451047
Q gi|254781044|r 73 TLTLRRSCREGICGSCGMNIDGTNTLACVK----------------DMKDIK-----GAIAVYPLPHMSVIKDLVVDMSH 131 (259)
Q Consensus 73 sl~fr~sCr~giCGsCa~~iNG~~~LAC~t----------------~~~~~~-----~~i~iePl~~~pVikDLvVD~~~ 131 (259)
||.=-.-+..|.||+|-+.|.|+.+.||.- ++..++ ....+++.. -.+.|..+-..
T Consensus 209 sln~iMvDgtGmCG~CRv~v~g~~kfaCvDGPeFd~h~Vd~d~~~~R~~~yk~~ek~~~~~~~~~~---~~~~~~~~~~~ 285 (760)
T PRK12778 209 SLNTIMVDGTGMCGACRITVGGKTKFVCVDGPEFDGHQVDFDEMLKRMGAFKTIEREELHKLDECE---ATKEIDGRTAP 285 (760)
T ss_pred EEECEEECCCCCCCEEEEEECCEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCC
T ss_conf 840868726775340699989989898562897566065799999998876888765431124455---42124433331
Q ss_pred HHH-HHHHHHH---CCCCCCCCCCCCCCCCHHHH---------------HHHHHHHHHHHHC--CCHHHCCCEEECCCCC
Q ss_conf 999-8875421---03466631101112207776---------------5446688888731--3132282001022210
Q gi|254781044|r 132 FYS-QHRSIEP---WLKTVSPKPAKELLQSHEDR---------------QKIDGLYECVMCA--CCSTSCPSYWWNSDRY 190 (259)
Q Consensus 132 ~~~-~~~~~~p---~~~~~~~~~~~e~~qsped~---------------~~~~~~~~CI~CG--~C~saCP~~~~~~~~f 190 (259)
+-. ..+..+| +..+..+-|+ |.|+.+ +.+.++.+|+.|+ .|+..||+.. +-
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~ev~~gyt~e~A~~EA~RCl~C~~p~C~~gCPv~i-dI--- 357 (760)
T PRK12778 286 WRAALRKAIKPKERMAIPRVQMNE----LDAEYRSHSRKEEVNQGLTEEQAVTEAQRCLDCANPGCMNGCPVGI-DI--- 357 (760)
T ss_pred CHHHHHHCCCCHHHCCCCCCCCCC----CCHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC-CH---
T ss_conf 105667513807545788766887----7977764161646525999999999998975799985454899999-77---
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-----CCCCCCCHHHHCCCCCC--HHHHHHHHHHHHHHC
Q ss_conf 11478899988516888431388999622866527-----67664734551899788--899999999999861
Q gi|254781044|r 191 LGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLY-----RCHTIMNCTQSCPKGLN--PAKAIAKIKMMLLDR 257 (259)
Q Consensus 191 lGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~-----~C~~C~~C~~vCPkgI~--~~~~I~~LRr~~v~r 257 (259)
|..+....+ .+ -.+-++.+.+.+.+- =|-+=..|+..|=.+.. -.=+|..|+|-+.+.
T Consensus 358 --P~fI~~i~~----g~---~~~A~~~i~e~N~lP~icGRVCP~e~~CE~~C~r~~~~~epVaIg~LeRf~aD~ 422 (760)
T PRK12778 358 --PRFIKNIER----GE---FLEAAKTLKETSALPAVCGRVCPQEKQCESKCIHLKMGKEAVAIGYLERFAADW 422 (760)
T ss_pred --HHHHHHHHC----CC---HHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHCCCCCCCCCEEECHHHHHHHHH
T ss_conf --999999986----99---999999998629816676084988577388607888798981778889999999
No 59
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein CcoG; InterPro: IPR014116 Member of this ferredoxin-like protein family, include FixG, CcoG and RdxA,. They are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else; it is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum..
Probab=97.37 E-value=2.5e-05 Score=53.44 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=14.5
Q ss_pred CCCCCCCCCHHHHCCCCCCH
Q ss_conf 27676647345518997888
Q gi|254781044|r 224 LYRCHTIMNCTQSCPKGLNP 243 (259)
Q Consensus 224 i~~C~~C~~C~~vCPkgI~~ 243 (259)
+..|+.|..|+.|||.||++
T Consensus 242 ~GDCvdC~~CV~VCPTGIDI 261 (474)
T TIGR02745 242 LGDCVDCNLCVQVCPTGIDI 261 (474)
T ss_pred CCCCCCCCCCCCCCCCCEEC
T ss_conf 78624776554242572022
No 60
>PRK13795 hypothetical protein; Provisional
Probab=97.36 E-value=3.1e-05 Score=52.78 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 46688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
+..+..|..||.|.+.||+-+..-+ + +.. ....++ -.|++|+.|+++||.-
T Consensus 571 i~R~~~C~gCg~C~~~CP~gAi~i~---~------------~~~--------~i~Vd~---~~CihC~~C~~~Cp~~ 621 (630)
T PRK13795 571 VRRAAICTGCGVCVGWCPTGAISID---E------------KKK--------KIVVDE---EKCIHCGKCMEVCPLV 621 (630)
T ss_pred HHHHHHCCCCCHHHHHCCCCCEEEE---C------------CCC--------EEEECC---HHCCCHHHHHHHCCEE
T ss_conf 9998747897346633788847973---6------------886--------497471---3277437776238732
No 61
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.31 E-value=0.00018 Score=48.12 Aligned_cols=57 Identities=26% Similarity=0.579 Sum_probs=40.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCC-------------------CCCCCCCCHH
Q ss_conf 8998642678811678999999732876388404567735443031-4361-------------------2663211000
Q gi|254781044|r 46 DTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGT-------------------NTLACVKDMK 105 (259)
Q Consensus 46 ~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~-------------------~~LAC~t~~~ 105 (259)
.+|+++ +|.|||+++.+- -+.+.|+||.|.||+|-++ +.|. -.|||+++..
T Consensus 12 ~~~~~~---~~etlL~aa~~~------gi~~p~~C~~G~Cg~Ck~~~~~G~v~~~~~~~~~l~~~e~~~g~~L~C~~~~~ 82 (337)
T PRK07609 12 RQFTVE---PDETILDAALRQ------GIHLPYSCKNGACGSCKAKLLEGEVEQGPHQASALSGEERAAGEILTCCAKPL 82 (337)
T ss_pred EEEEEC---CCCHHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCHHHHHCCEEEEEEEEEC
T ss_conf 399979---999699999986------99874789991370388999988484277654668988985794998425778
Q ss_pred CCCCCEEEE
Q ss_conf 047851898
Q gi|254781044|r 106 DIKGAIAVY 114 (259)
Q Consensus 106 ~~~~~i~ie 114 (259)
. .++||
T Consensus 83 s---D~~ie 88 (337)
T PRK07609 83 S---DLELE 88 (337)
T ss_pred C---CCEEE
T ss_conf 8---83898
No 62
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.29 E-value=2.4e-05 Score=53.48 Aligned_cols=50 Identities=32% Similarity=0.616 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 6688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
.+..+||.||.|+.+||+-... + ..+.+ + ...+ ...|+.||.|+++||.+
T Consensus 39 ~d~dkCigC~~C~~~CP~~aI~---~------------~~~~~------~--~~i~---~~~Ci~Cg~C~~~CP~~ 88 (111)
T PRK08348 39 YNVDKCVGCRMCVTVCPAGVFV---Y------------LPEIR------K--VALW---TGRCVFCGQCVDVCPTG 88 (111)
T ss_pred CCCCCCCCCCHHHHHCCCCCCE---E------------CCCCC------E--EEEC---CCCCCCCCCCCCCCCCC
T ss_conf 6855282807287759322067---5------------27766------6--7877---79085388757737728
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.27 E-value=0.00038 Score=46.03 Aligned_cols=163 Identities=21% Similarity=0.398 Sum_probs=81.6
Q ss_pred CCCCCCCCCEEEECCCCCCCCCC------CHHCC----------C--CCEEEEE-CCCCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 56773544303143612663211------00004----------7--8518986-4898044112451047999887542
Q gi|254781044|r 80 CREGICGSCGMNIDGTNTLACVK------DMKDI----------K--GAIAVYP-LPHMSVIKDLVVDMSHFYSQHRSIE 140 (259)
Q Consensus 80 Cr~giCGsCa~~iNG~~~LAC~t------~~~~~----------~--~~i~ieP-l~~~pVikDLvVD~~~~~~~~~~~~ 140 (259)
-..|+||+|-+.|.|+.+.||.- +.-|+ + .....+- ...-+.-++|..+...-+++.+...
T Consensus 217 DGTGMCGaCRVtVgGe~KFACVDGPEFDgh~VDfdEl~~Rq~~yK~eE~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 296 (993)
T PRK12775 217 DGTGMCGSCRVTVGGEVKFACVDGPDFDGHKVDFKELHARQKRFKTEEDKANEHFAHVCNLEKQLIVEGKRNYKKLATLV 296 (993)
T ss_pred CCCCCCCCEEEEECCEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHCC
T ss_conf 56875341389989989999664888567244799999998764445400112443325620222321240021242148
Q ss_pred HCCCCCCCCCCCCCCCCHH-------HHHHHHHHHHHHHHC--CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 1034666311011122077-------765446688888731--3132282001022210114788999885168884313
Q gi|254781044|r 141 PWLKTVSPKPAKELLQSHE-------DRQKIDGLYECVMCA--CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQ 211 (259)
Q Consensus 141 p~~~~~~~~~~~e~~qspe-------d~~~~~~~~~CI~CG--~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~ 211 (259)
|--.+....+..++...=+ .-..+.++.+|++|. .|+..||+.. + -|..+.+... .|-
T Consensus 297 p~~~pmpeqdp~~R~~nF~EV~lGyt~e~A~~EA~RCLqCk~p~Cv~GCPV~i-d-----IP~FI~~I~~-----gdf-- 363 (993)
T PRK12775 297 PHQTPMPERDAVERATNFKEVNLGYSVEEALQEAERCIQCIKPTCIAGCPVGI-D-----IPVFIRNILV-----RDF-- 363 (993)
T ss_pred CCCCCCCCCCHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC-C-----HHHHHHHHHC-----CCH--
T ss_conf 87788998997787368413115899999999998850898997677998988-7-----5999999973-----889--
Q ss_pred HHHHHHHCCCCCCC-----CCCCCCCHHHHCCCCC----CHHHHHHHHHHHHHH
Q ss_conf 88999622866527-----6766473455189978----889999999999986
Q gi|254781044|r 212 GERLDNLEDPFRLY-----RCHTIMNCTQSCPKGL----NPAKAIAKIKMMLLD 256 (259)
Q Consensus 212 ~erl~~l~~~~gi~-----~C~~C~~C~~vCPkgI----~~~~~I~~LRr~~v~ 256 (259)
.+-++.+.+.+.+= =|-+=..|...|=-+- .| -+|-.|.|-+.+
T Consensus 364 ~~A~~iI~e~n~LPaICGRVCPQE~qCEg~Cvl~~~~k~ep-VaIG~LERFvaD 416 (993)
T PRK12775 364 DAALETIYESSIFPSICGRVCPQETQCEAQCIIRRYKKHEP-VAIGRLERFVGD 416 (993)
T ss_pred HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC-EEECHHHHHHHH
T ss_conf 99999997538851765365895035020247776789888-687532766645
No 64
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=97.25 E-value=0.00047 Score=45.48 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=49.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEECCC
Q ss_conf 998642678811678999999732876388404567-735443031436126632110000478--518986489
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCRE-GICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPLPH 118 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~-giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl~~ 118 (259)
..++... ++.+++++|. ++ +-++-+..|-+ |.||+|++.|||+++-+|.+.+..+.+ ..|||=|..
T Consensus 7 ~~~~~~~-~~~~l~~~lr----~~-~~~~~k~gc~~~G~CGaCtVl~dG~~~~sC~~~~~~~~g~~v~T~egl~~ 75 (951)
T TIGR03313 7 PQTLECK-LGENVQTLLF----NM-GMHSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQ 75 (951)
T ss_pred EEEECCC-CCCHHHHHHH----HC-CCCCCCCCCCCCCCCCCCEEEECCEEEEHHHCCHHHHCCCEEEEECCCCC
T ss_conf 7574268-1224999999----76-89467525489988761589998918451033198857987996146698
No 65
>PTZ00038 ferredoxin; Provisional
Probab=97.24 E-value=0.00077 Score=44.17 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=39.1
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCCC
Q ss_conf 79999986368888887368998642678811678999999732876388404567735443031-43612
Q gi|254781044|r 27 LKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGTN 96 (259)
Q Consensus 27 ~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~~ 96 (259)
..-++|.=-.|+.+ .+++++ ++.++|||..+. -+..-+|||+|.||+|+.+ +.|..
T Consensus 74 ~l~y~v~l~tp~g~-----~~ieC~---eDE~ILDAAer~------GI~LPySCR~G~CgTCkakLisGeV 130 (172)
T PTZ00038 74 KLYYNVKLRTPEGE-----KVIECD---EDEYILEAAERQ------GVELPYSCRGGSCSTCAAKLVEGEV 130 (172)
T ss_pred CEEEEEEEECCCCC-----EEEECC---CCCHHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 15899999889997-----768689---986599999984------9987777778618888179998148
No 66
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=97.24 E-value=0.00031 Score=46.64 Aligned_cols=58 Identities=24% Similarity=0.448 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEEC
Q ss_conf 8811678999999732876388404567735443031436126632110000478--5189864
Q gi|254781044|r 55 CGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPL 116 (259)
Q Consensus 55 ~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl 116 (259)
++.++++.|.. +. +=.+-...|.+|.||+|.+.|||+++-+|.+.+..+.+ .+|||=|
T Consensus 14 ~~~~L~~~LR~---~l-~~~~~K~gC~~G~CGaCtv~~dg~~~~sC~~~~~~~~g~~v~T~egl 73 (848)
T TIGR03311 14 EEKKLLEFLRE---DL-RLTGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGL 73 (848)
T ss_pred CCCHHHHHHHH---HC-CCCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHCCCCEEEECCCC
T ss_conf 98719999988---76-99510157389998867899899185442514988289889953777
No 67
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=97.17 E-value=0.00031 Score=46.63 Aligned_cols=42 Identities=29% Similarity=0.595 Sum_probs=30.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCCC
Q ss_conf 998642678811678999999732876388404567735443031-43612
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGTN 96 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~~ 96 (259)
+|++. +...++||+|..- -+.+.|+||+|.||+|-.+ +.|+-
T Consensus 12 ~~~~~--~~~~sLL~al~~~------gv~~~~sCr~G~CGtCk~~l~~GeV 54 (84)
T PRK10713 12 QLLCQ--DEHPSLLAALESH------NVAVEYQCREGYCGSCRTRLVAGQV 54 (84)
T ss_pred EEEEC--CCCCHHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 99957--9967699999986------9998568889768888779897777
No 68
>TIGR02910 sulfite_red_A sulfite reductase, subunit A; InterPro: IPR014259 This entry represents subunit A, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=97.10 E-value=7.1e-05 Score=50.56 Aligned_cols=87 Identities=23% Similarity=0.384 Sum_probs=51.2
Q ss_pred HHHHHHCCCHHHCCCEE----------ECCCCCCCHHHHHHHHH------HHCCC---C-CCCHHHHHHHHC---C---C
Q ss_conf 88887313132282001----------02221011478899988------51688---8-431388999622---8---6
Q gi|254781044|r 168 YECVMCACCSTSCPSYW----------WNSDRYLGPAILLQAYR------WLIDS---R-DEFQGERLDNLE---D---P 221 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~----------~~~~~flGP~~l~~a~r------~~~D~---r-D~~~~erl~~l~---~---~ 221 (259)
.+||-||+|..+||+-. .|+. .|=+=-++|.= -+.-+ | +.+..-|.+.++ | -
T Consensus 231 sRCI~CGRCn~vCPTCtCf~mqDvfY~dN~~--~GERRRvWASC~vdGFt~mAGGh~FR~~~G~RmRfkvmHKv~DYkkR 308 (346)
T TIGR02910 231 SRCIACGRCNTVCPTCTCFSMQDVFYKDNKK--AGERRRVWASCMVDGFTNMAGGHGFREKKGQRMRFKVMHKVNDYKKR 308 (346)
T ss_pred HCCCCCCCCCCCCCCCCCCCEEEEEEECCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC
T ss_conf 0344577768888763333035455503678--88723221153058865555776532578861123431021100001
Q ss_pred CCC-CCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 652-76766473455189978889999999999986
Q gi|254781044|r 222 FRL-YRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLD 256 (259)
Q Consensus 222 ~gi-~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~ 256 (259)
+|. ..|+.||.|-+.||.=|+--..|.+|...+-+
T Consensus 309 ~GyeHMCVGCGRCDD~CpeYIsFSnciNKl~~~v~e 344 (346)
T TIGR02910 309 NGYEHMCVGCGRCDDICPEYISFSNCINKLKAAVKE 344 (346)
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 686300324777466672034565566653235421
No 69
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=97.08 E-value=9.1e-05 Score=49.91 Aligned_cols=60 Identities=25% Similarity=0.562 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHCCCHHHCCCE-EECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 65446688888731313228200-10222101147889998851688843138899962286652767664734551899
Q gi|254781044|r 161 RQKIDGLYECVMCACCSTSCPSY-WWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK 239 (259)
Q Consensus 161 ~~~~~~~~~CI~CG~C~saCP~~-~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk 239 (259)
.+.++...+||.||.|+.+||.- .. +. +.+.. ..+++.... .. --.|+.|+.|+++||.
T Consensus 41 ~~~~f~~~~C~~C~~C~~~C~~~IHT-kt-----a~~~~----~~~~~~~~~------~~----~~~c~~Cg~C~~~Cp~ 100 (305)
T TIGR02494 41 PELLFKENRCLGCGKCVEVCPAGIHT-KT-----ARLVE----RLDGRNIIS------IR----REKCTGCGKCTEACPS 100 (305)
T ss_pred CCEEEECCCCCCCCHHHHHCCCCCCC-CH-----HHHHH----HHCCCCCEE------EC----CCCCCCCCCHHHCCCC
T ss_conf 10242002344300145432454233-20-----67787----641786010------00----0177411101103840
Q ss_pred C
Q ss_conf 7
Q gi|254781044|r 240 G 240 (259)
Q Consensus 240 g 240 (259)
+
T Consensus 101 ~ 101 (305)
T TIGR02494 101 G 101 (305)
T ss_pred H
T ss_conf 0
No 70
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=96.91 E-value=9.5e-05 Score=49.80 Aligned_cols=48 Identities=19% Similarity=0.451 Sum_probs=31.6
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
...||.||.|..+||.-..... .+ .+..++. -.|+.|+.|.++||+++
T Consensus 112 ~~~CiGcg~Cv~~CP~dAI~~~------------------~~-----~~~~V~~----d~C~gCg~Cv~~CP~~~ 159 (184)
T PRK05113 112 EDNCIGCTKCIQACPVDAIVGA------------------TK-----AMHTVIS----DLCTGCDLCVAPCPTDC 159 (184)
T ss_pred CCCCCCCCHHHHHCCCCCEECC------------------CC-----CCEEECH----HHCCCCCHHHHHCCCCC
T ss_conf 5248886811201994627768------------------99-----8869786----46808352546558673
No 71
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.90 E-value=0.00021 Score=47.68 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 6688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
.+..+||.||.|+.+||.-... + ..|. ...++ ...|..||.|.++||.+
T Consensus 48 vD~eKCi~Cg~C~~~CP~~AI~----~-----------~~dg--------~~~ID----~d~C~GCG~C~~~CP~~ 96 (105)
T PRK09623 48 VDESKCVKCYICWKFCPEPAIY----I-----------KEDG--------YVAID----YDYCKGCGICANECPTK 96 (105)
T ss_pred CCHHHCCCCCCHHHHCCCCCEE----E-----------CCCC--------CEEEC----HHHCCCHHHHHHHCCHH
T ss_conf 2462584851346470998089----7-----------4998--------48868----66892863887767997
No 72
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.88 E-value=0.00022 Score=47.50 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 6688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
.+..+||.||.|+.+||.-...-+ .+.. ..+ | .-.|..||.|.++||.+
T Consensus 48 id~dkCi~Cg~C~~~CP~~AI~~d---------------e~g~--------~~i-D---~d~C~GCG~Ca~~CP~~ 96 (105)
T PRK09624 48 FNRDKCVRCYLCYIYCPEPAIYLD---------------EEGY--------PVF-D---YDYCKGCGICANECPTK 96 (105)
T ss_pred ECHHHCCCCCCHHHHCCCCEEEEC---------------CCCC--------EEE-C---HHHCCCCCHHHHHCCHH
T ss_conf 744268282122425095607987---------------9988--------885-7---65785705545257983
No 73
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=96.88 E-value=0.00058 Score=44.93 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=7.8
Q ss_pred CCC-CHHHHHHHHH
Q ss_conf 101-1478899988
Q gi|254781044|r 189 RYL-GPAILLQAYR 201 (259)
Q Consensus 189 ~fl-GP~~l~~a~r 201 (259)
-|+ ||..|+.+.+
T Consensus 207 vY~CGP~~~m~a~~ 220 (335)
T PRK10684 207 VMTCGPAPYMDWVE 220 (335)
T ss_pred EEEECCHHHHHHHH
T ss_conf 99979899999999
No 74
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=96.87 E-value=0.00021 Score=47.66 Aligned_cols=18 Identities=28% Similarity=0.778 Sum_probs=11.5
Q ss_pred HHHHHHHHHCCCHHHCCC
Q ss_conf 668888873131322820
Q gi|254781044|r 165 DGLYECVMCACCSTSCPS 182 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~ 182 (259)
-+...|+.||+|+++||.
T Consensus 9 id~glCtGCGaCvavCP~ 26 (346)
T PRK09326 9 INHDVCAACGACEAVCPI 26 (346)
T ss_pred CCCCCCCCCHHHHHHCCC
T ss_conf 059845786027760577
No 75
>pfam00111 Fer2 2Fe-2S iron-sulfur cluster binding domain. Several members of the Prosite family are not included since they only contain the active site.
Probab=96.86 E-value=0.00057 Score=44.97 Aligned_cols=39 Identities=26% Similarity=0.596 Sum_probs=28.0
Q ss_pred EEEECCCCCCH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 98642678811-67899999973287638840456773544303143
Q gi|254781044|r 48 YYVDLDNCGPM-VLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNID 93 (259)
Q Consensus 48 y~v~~~~~~~t-vld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iN 93 (259)
+++++.+ +.+ +|+++.. . .+.+.++|+.|.||+|-++|.
T Consensus 8 ~~~~~~~-~~t~lL~a~~~----~--g~~i~~~C~~G~CgtC~v~v~ 47 (78)
T pfam00111 8 VTIEVPD-GETTLLDAAEE----A--GIDIPYSCRGGGCGTCAVKVL 47 (78)
T ss_pred EEEEECC-CCCHHHHHHHH----C--CCCCCCCCCCEECCCCEEEEE
T ss_conf 6999889-97689999998----5--999746689848079988998
No 76
>KOG3256 consensus
Probab=96.82 E-value=0.00022 Score=47.49 Aligned_cols=59 Identities=20% Similarity=0.523 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+..+||-|-.|.++||+-...-+. ..|... ..|...-+-+ ...|..||.|.++||.+-
T Consensus 108 ~geerCIACklCeavCPaqaitiea---------------e~r~dg-srRttrYdID--mtkCIyCG~CqEaCPvda 166 (212)
T KOG3256 108 SGEERCIACKLCEAVCPAQAITIEA---------------EERTDG-SRRTTRYDID--MTKCIYCGFCQEACPVDA 166 (212)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEE---------------EECCCC-CCCCEEECCC--CEEEEEECCHHHHCCCCC
T ss_conf 8521213678888748744545522---------------213775-4210210445--214656045364387231
No 77
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=96.82 E-value=0.0011 Score=43.30 Aligned_cols=35 Identities=29% Similarity=0.734 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE-CC
Q ss_conf 788116789999997328763884045677354430314-36
Q gi|254781044|r 54 NCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI-DG 94 (259)
Q Consensus 54 ~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i-NG 94 (259)
..|.|+||++.... +-..++||.|.||+|.++| .|
T Consensus 20 ~~g~tiLe~a~~~g------i~i~~~C~~g~C~TC~v~v~~G 55 (102)
T COG0633 20 NEGETLLEAAERNG------IPIEYACRGGACGTCRVKVLEG 55 (102)
T ss_pred CCCCHHHHHHHHCC------CCCCCCCCCCCCCCCEEEECCC
T ss_conf 79977999998869------9626068997248768998447
No 78
>TIGR02912 sulfite_red_C sulfite reductase, subunit C; InterPro: IPR014261 This entry represents subunit C, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=96.77 E-value=0.00022 Score=47.56 Aligned_cols=54 Identities=19% Similarity=0.419 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 5446688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 162 QKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 162 ~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
+.-++.++||.||+|+.+|.-..++ .-. +. -.+.+.++. .|..||+|...||.+
T Consensus 169 ~~~y~~~rC~gC~ACV~~C~~~~~G------aL~------~~----------N~Kvvr~~~---~CIGCGECv~~CPT~ 222 (323)
T TIGR02912 169 EPRYDADRCIGCGACVKVCKKKAVG------ALS------LE----------NYKVVRDES---KCIGCGECVLKCPTG 222 (323)
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCE------EEE------EE----------CCEEEECCC---CEECCCCHHHCCCCC
T ss_conf 5442655331324678403432210------223------10----------422565277---500353013208864
No 79
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=96.76 E-value=0.0027 Score=40.74 Aligned_cols=172 Identities=16% Similarity=0.259 Sum_probs=76.6
Q ss_pred EEEEEECCC-CCCCCCEEEEEEECCCCCC-----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE--ECCC------
Q ss_conf 999863688-8888736899864267881-----1678999999732876388404567735443031--4361------
Q gi|254781044|r 30 YRIYRWNPD-NKGNPCMDTYYVDLDNCGP-----MVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN--IDGT------ 95 (259)
Q Consensus 30 ~~i~R~~p~-~~~~~~~~~y~v~~~~~~~-----tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~--iNG~------ 95 (259)
+....|.|. +|.+ .+.+|.|.+-+.+. .-++.|..|+++-.-=+|| |+||.. |++-
T Consensus 33 v~divy~~~l~d~k-e~pe~DValVEGsV~~~~e~~le~ikeiRekskilVA~---------GaCA~~GGI~~~~~ggq~ 102 (228)
T TIGR03294 33 IADLVYCQTLADAR-EIPEMDVALVEGSVCLQDEHSLEEIKELREKAKVVVAL---------GACAATGNFTRYSRGGQQ 102 (228)
T ss_pred HHEEEECHHHCCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEE---------ECCCCCCCCCEECCCCCC
T ss_conf 23247440111576-58885189995501578677799999999868889996---------412102882000258877
Q ss_pred --CCCCCCCCHHCCCCCEEEE-ECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCHHHHHHHHHHHHH
Q ss_conf --2663211000047851898-6489804411245104799988754210346663110--1112207776544668888
Q gi|254781044|r 96 --NTLACVKDMKDIKGAIAVY-PLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPA--KELLQSHEDRQKIDGLYEC 170 (259)
Q Consensus 96 --~~LAC~t~~~~~~~~i~ie-Pl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~--~e~~qsped~~~~~~~~~C 170 (259)
|...=. ..+.+.|.+. -+||=|.-.|.|.. .+-.-+..-+||+.+...-.+ ++.- -=.-.++.-.-.-|
T Consensus 103 ~~P~~e~~---~Pi~~vV~VD~~iPGCPP~pe~I~~--~~~all~G~~~yl~p~~~~~~~~~~~c-gcdl~~~vin~~LC 176 (228)
T TIGR03294 103 AQPQHESF---VPITDVIDVDLAIPGCPPSPEAIRN--VCVALLNGDMEYLQPLAALAEEGTEAC-GCDLMTKVVNQGLC 176 (228)
T ss_pred CCCCCCCC---CCHHHEEEECEECCCCCCCHHHHHH--HHHHHHCCCCHHCCCHHHHHHCCCCCC-CCHHHHHCCCCCCC
T ss_conf 88875552---5601447616782799849899999--999997399221254799972386345-75037752463216
Q ss_pred HHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHH
Q ss_conf 873131322820010222101147889998851688843138899962286652767664734551899788899
Q gi|254781044|r 171 VMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAK 245 (259)
Q Consensus 171 I~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~ 245 (259)
|.||.|.++||+-+..- .|.+. .++. -.|..||.|..+||+..-|..
T Consensus 177 ~GCg~Ca~~Cp~~AI~~----------------~~gkp--------~i~~----~~Ci~CG~C~~~CPr~~~p~~ 223 (228)
T TIGR03294 177 MGCGTCAAACPTRAIEM----------------EDGRP--------NVNR----DRCIKCGACYVQCPRAFWPEY 223 (228)
T ss_pred CCCHHHHHHCCCCCCEE----------------ECCCE--------EECH----HHCCCCCCCCCCCCCCCCCHH
T ss_conf 78157785488576256----------------53836--------7763----227767744121976428655
No 80
>PRK09800 putative selenate reductase subunit YgfN; Provisional
Probab=96.72 E-value=0.00091 Score=43.70 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=37.0
Q ss_pred EEEEECCCC-CCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEECCC
Q ss_conf 388404567-735443031436126632110000478--518986489
Q gi|254781044|r 74 LTLRRSCRE-GICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPLPH 118 (259)
Q Consensus 74 l~fr~sCr~-giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl~~ 118 (259)
.+.+.+|-. |.||+|++.|||+++-||.+.+..+.+ ..|||=|..
T Consensus 4 ~~v~~gc~~~G~CGaCtVl~dG~~~~sC~~~~~~~~g~~v~T~egl~~ 51 (928)
T PRK09800 4 HSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLGK 51 (928)
T ss_pred CCCCCCCCCCCCCCCCEEEECCEEEEHHHCCHHHHCCCEEEEECCCCC
T ss_conf 554778799968750489998918352035498828987996157798
No 81
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=96.70 E-value=0.00013 Score=49.05 Aligned_cols=52 Identities=27% Similarity=0.672 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
+...||.||.|+-+|- ++. | +|..+. . ..|.-.+.++ .|+.|+-|..+||..
T Consensus 340 ~~~~Ci~Cg~C~~~C~----d~~-~-------qai~~~--~-----~~~~~~v~~~----~C~gC~LC~~vCPv~ 391 (413)
T PRK08318 340 DQDKCIGCGRCYIACE----DTS-H-------QAIEWD--D-----GTRTPEVNDE----ECVGCNLCAHVCPVE 391 (413)
T ss_pred CHHHCCCCCCEEEEEC----CCC-E-------EEEEEC--C-----CCCCEEECCC----CCCCCCCCCCCCCCC
T ss_conf 7313899888444616----787-2-------206862--8-----8873266766----479867702018976
No 82
>PRK10194 ferredoxin-type protein; Provisional
Probab=96.69 E-value=0.00035 Score=46.29 Aligned_cols=15 Identities=33% Similarity=0.809 Sum_probs=9.4
Q ss_pred CCCCCCCHHHHCCCC
Q ss_conf 676647345518997
Q gi|254781044|r 226 RCHTIMNCTQSCPKG 240 (259)
Q Consensus 226 ~C~~C~~C~~vCPkg 240 (259)
.|+.||.|..+||.+
T Consensus 140 ~C~GCG~C~~~CP~~ 154 (164)
T PRK10194 140 LCNGCGACAASCPVS 154 (164)
T ss_pred CCCCCCCHHHHCCCC
T ss_conf 788642014208987
No 83
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.67 E-value=0.0002 Score=47.78 Aligned_cols=63 Identities=19% Similarity=0.436 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf 77765446688888731313228200102221011478899988516888431388999622866527676647345518
Q gi|254781044|r 158 HEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSC 237 (259)
Q Consensus 158 ped~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vC 237 (259)
|++.--.-+-.+|+.||.|+++||.-.. .+..|+.... ......++ + -.|+.||.|..+|
T Consensus 6 p~n~pV~Vde~~C~gC~~Cv~~CP~~~l---------------~m~~d~~~~~-G~~~~vv~-p---e~CIgCG~Ce~~C 65 (103)
T PRK09626 6 PDNTPVWVDESRCKACDICVSYCPAGVL---------------AMRIEPHAVL-GKMIEVVY-P---ESCIGCRECELHC 65 (103)
T ss_pred CCCCCEEECCCCCCCCCHHHHHCCHHHH---------------HHCCCCCCCC-CCCCCCCC-H---HHCCCCCHHHHHC
T ss_conf 9898488640107771288887776564---------------3245644345-65422168-3---3583827575548
Q ss_pred CCC
Q ss_conf 997
Q gi|254781044|r 238 PKG 240 (259)
Q Consensus 238 Pkg 240 (259)
|..
T Consensus 66 Pd~ 68 (103)
T PRK09626 66 PDF 68 (103)
T ss_pred CHH
T ss_conf 823
No 84
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.66 E-value=0.0004 Score=45.93 Aligned_cols=54 Identities=20% Similarity=0.544 Sum_probs=32.5
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..||.||.|+.+||+-.. ++ -|.|..+...+..+. .--+|..|+.|+.+||.+-
T Consensus 8 D~CIgC~~CvrvCPt~vi---eM--------------Vp~dg~~~~q~~~~~---RtedCIGC~~CE~aCPtda 61 (80)
T TIGR03048 8 DTCIGCTQCVRACPTDVL---EM--------------VPWDGCKAGQIASAP---RTEDCVGCKRCESACPTDF 61 (80)
T ss_pred CCCCCCHHHHHHCCCCCE---EE--------------CCCCCCCCCCCCCCC---CCCCCCCCCHHHHCCCCCC
T ss_conf 406680466865884514---52--------------246665446455788---6100556213443089873
No 85
>PRK09898 hypothetical protein; Provisional
Probab=96.66 E-value=0.00065 Score=44.62 Aligned_cols=49 Identities=22% Similarity=0.632 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 4466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 163 KIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 163 ~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+.+...||.|+.|+.+||-... ++ |+.+. -...|..|++|+++||.|-
T Consensus 149 v~~d~~~CigC~~C~~aCP~~~~----~~-------------~~~~~-------------~~~KC~lC~~Cv~~CP~~A 197 (208)
T PRK09898 149 ITVDHKRCIGCSACTTACPWMMA----TV-------------NTESK-------------KSSKCVLCGECANACPTGA 197 (208)
T ss_pred EEEEHHHCCCCCHHHHHCCCCCC----EE-------------CCCCC-------------CCCCCCCHHHHHHHCCHHC
T ss_conf 99877768041189973999985----76-------------78889-------------6684868669998671201
No 86
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.64 E-value=0.0024 Score=41.13 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=13.1
Q ss_pred CCCCCCCCHHHHCCC
Q ss_conf 767664734551899
Q gi|254781044|r 225 YRCHTIMNCTQSCPK 239 (259)
Q Consensus 225 ~~C~~C~~C~~vCPk 239 (259)
-.|..||.|+.+|-.
T Consensus 616 ~kCi~Cg~Cv~~c~e 630 (652)
T PRK12814 616 EKCVDCGICVRTLEE 630 (652)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 645334689999886
No 87
>TIGR00402 napF ferredoxin-type protein NapF; InterPro: IPR004496 Members of this family are the ferredoxin-type protein subunits of nitrate reductase. These NapF proteins are involved in electron transfer, and contain iron-sulphur centres similar to those of bacterial-type 4FE-4S ferredoxins.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0006118 electron transport.
Probab=96.61 E-value=0.00031 Score=46.63 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=32.2
Q ss_pred HHHHHHHCCCHHHCCCEEE-CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 8888873131322820010-222101147889998851688843138899962286652767664734551899788
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWW-NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~-~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~ 242 (259)
++.|.+||.|.++||+-.. .++. ..| .+.=++ ..|+.||+|+++||..|=
T Consensus 38 ~a~CtrCg~C~saCennil~~g~~-G~p-----------------------~v~fdn--~eC~fCgkCa~aCp~~~f 88 (161)
T TIGR00402 38 VARCTRCGECLSACENNILQKGDA-GYP-----------------------EVEFDN--AECDFCGKCAEACPESLF 88 (161)
T ss_pred EEEECCCCCHHHHCCCCEEEECCC-CCE-----------------------EEEEEC--CCCCCCCHHHHHCCCCCC
T ss_conf 663188434030178450651678-850-----------------------688756--876722122642875557
No 88
>PRK13984 putative oxidoreductase; Provisional
Probab=96.59 E-value=0.00044 Score=45.68 Aligned_cols=81 Identities=26% Similarity=0.462 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-----CCCCCCCCHHHH
Q ss_conf 544668888873131322820010222101147889998851688843138899962286652-----767664734551
Q gi|254781044|r 162 QKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRL-----YRCHTIMNCTQS 236 (259)
Q Consensus 162 ~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi-----~~C~~C~~C~~v 236 (259)
+...++.+|+.||.|.+.||+...= |..+..++ ..+- ++-++.+...+-+ .=|.+ .|+.+
T Consensus 179 ~A~~eA~RCl~Cg~C~~~CP~~n~I------P~~i~lv~----~G~~---~eA~~~i~~tN~fP~icGRVCP~--~CE~a 243 (604)
T PRK13984 179 QAMKEAARCVECGICTDTCPAHMQI------PDYIKAIY----KDDL---EEGLRWLYKTNPLSAVCGRVCTH--KCETV 243 (604)
T ss_pred HHHHHHHHCCCCHHHHCCCCCCCCH------HHHHHHHH----CCCH---HHHHHHHHHHCCHHHHHHCCCCC--HHHHH
T ss_conf 9999998725880210079999976------89999998----7899---99999998768803475378985--01786
Q ss_pred CCCCCCH-HHHHHHHHHHHHHC
Q ss_conf 8997888-99999999999861
Q gi|254781044|r 237 CPKGLNP-AKAIAKIKMMLLDR 257 (259)
Q Consensus 237 CPkgI~~-~~~I~~LRr~~v~r 257 (259)
|=.++.- .=.|..|+|.+.++
T Consensus 244 C~~~~~~~pVaI~~lER~iaD~ 265 (604)
T PRK13984 244 CSVGHRGEPIAIRWLKRYIVDN 265 (604)
T ss_pred HCCCCCCCCEEECHHHHHHHHH
T ss_conf 3289989982536678888507
No 89
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=96.58 E-value=0.00048 Score=45.45 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=11.1
Q ss_pred CCCCCCCHHHHCCCCC
Q ss_conf 6766473455189978
Q gi|254781044|r 226 RCHTIMNCTQSCPKGL 241 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI 241 (259)
.||.||.|+.+|+.+-
T Consensus 185 ~CTGCG~CE~aCv~e~ 200 (254)
T PRK09476 185 ACTGCGKCEKACVLEK 200 (254)
T ss_pred CCCCCCCHHHCCCCCC
T ss_conf 5787731211227886
No 90
>CHL00065 psaC photosystem I subunit VII
Probab=96.51 E-value=0.00061 Score=44.77 Aligned_cols=54 Identities=20% Similarity=0.548 Sum_probs=33.6
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..||.|+.|+.+||.-.. .+.|+|..+...+.... ..-.|+.|+.|..+||.+-
T Consensus 9 D~CiGC~~Cvr~CP~dvi-----------------emvp~dg~k~~q~~~~~---R~EdCiGC~~Ce~aCPtda 62 (81)
T CHL00065 9 DTCIGCTQCVRACPTDVL-----------------EMIPWDGCKAKQIASAP---RTEDCVGCKRCESACPTDF 62 (81)
T ss_pred EECCCHHHHHHHCCCCHH-----------------HCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC
T ss_conf 343685789886883010-----------------01234455545335667---6132766653535589986
No 91
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=96.46 E-value=0.00048 Score=45.45 Aligned_cols=61 Identities=21% Similarity=0.467 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..++.+||-|-.|+-+||.-.--- -|++.. ..+...|..-.-+.| -|..||+|++.||.+.
T Consensus 59 hfefdkCiaCevCvrvCPi~lP~v-----------dW~~~k----~~k~k~l~~ysidfG--vCifCGnCveyCPtnC 119 (187)
T TIGR00403 59 HFEFDKCIACEVCVRVCPINLPVV-----------DWEFEK----AIKKKQLKNYSIDFG--VCIFCGNCVEYCPTNC 119 (187)
T ss_pred EEEECCEEEEEEEEEEECCCCCEE-----------CHHHHH----HHHHHHHHHHHHHCC--EEEEECCCCCCCCCCC
T ss_conf 653133344234567621436312-----------045554----677767753000000--4676447210057530
No 92
>PRK02651 photosystem I subunit VII; Provisional
Probab=96.37 E-value=0.00073 Score=44.30 Aligned_cols=54 Identities=20% Similarity=0.539 Sum_probs=32.7
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..||.|+.|+.+||+-.. ++ + |+|..+. ..+......-.|..|+.|+.+||.+-
T Consensus 9 D~CIgC~qCV~~CPt~Vl---eM------------v--p~~g~k~---~q~~~~pR~edCIGCk~Ce~aCPtd~ 62 (81)
T PRK02651 9 DTCIGCTQCVRACPLDVL---EM------------V--PWDGCKA---GQIASSPRTEDCVGCKRCETACPTDF 62 (81)
T ss_pred CCCCCHHHHHHHCCCCCE---EE------------C--CCCCCCC---CCCCCCCCHHHCCCHHHHHHCCCCCC
T ss_conf 313674566865887603---64------------2--4677613---50225884543335144663089985
No 93
>PRK10330 electron transport protein HydN; Provisional
Probab=96.37 E-value=0.00061 Score=44.78 Aligned_cols=62 Identities=21% Similarity=0.405 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCC-CHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCC------HHHHC
Q ss_conf 668888873131322820010222101-14788999885168884313889996228665276766473------45518
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYL-GPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMN------CTQSC 237 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~fl-GP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~------C~~vC 237 (259)
.+...||.|+.|..+||--.. ++. .|.. +. .... +.......-+..|+.|.. |+++|
T Consensus 84 vd~~~CiGC~~C~~ACPyga~---~~~~~p~~-----~~----~~~~----~~~~~~~~~~~KCd~C~~R~~~PACV~aC 147 (181)
T PRK10330 84 VMQERCIGCKTCVVACPYGAM---EVVVRPVI-----RN----SGAG----LNVRAEKAEANKCDLCNHREDGPACMAAC 147 (181)
T ss_pred ECCCCCCCCCCHHHCCCCCCC---CCCCCCCC-----CC----CCCC----CCCCCCCCEEEEEECCCCCCCCCHHHHHC
T ss_conf 854729272930133999983---50456552-----23----4666----55545552588630133678886006778
Q ss_pred CCCCC
Q ss_conf 99788
Q gi|254781044|r 238 PKGLN 242 (259)
Q Consensus 238 PkgI~ 242 (259)
|.+--
T Consensus 148 Pt~Al 152 (181)
T PRK10330 148 PTHAL 152 (181)
T ss_pred CCCCE
T ss_conf 82211
No 94
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=96.32 E-value=0.0018 Score=41.89 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC----
Q ss_conf 2077765446688888731313228200102221011478899988516888431388999622866527676647----
Q gi|254781044|r 156 QSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIM---- 231 (259)
Q Consensus 156 qsped~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~---- 231 (259)
..+++-.-+.+-..||.|+.|..+||-- - |. |..|.. ..-++.|+.|.
T Consensus 132 k~~~~G~V~~d~~~CiGC~~C~~aCP~~---i-----P~-------~~~~~~-------------~~~i~KC~~C~~~~~ 183 (329)
T PRK10882 132 KDPKTGIVHYDKDVCTGCRYCMVACPFN---V-----PK-------YDYNNP-------------FGAIHKCELCNQKGV 183 (329)
T ss_pred ECCCCCEEEECCCEECCCCHHHHCCCCC---C-----CC-------CCCCCC-------------CCCEEECCCCCCCCH
T ss_conf 7689954997157007710675439999---9-----74-------235578-------------986413889878532
Q ss_pred ---------CHHHHCCCCCC----HHHHHHHHHHHHHHC
Q ss_conf ---------34551899788----899999999999861
Q gi|254781044|r 232 ---------NCTQSCPKGLN----PAKAIAKIKMMLLDR 257 (259)
Q Consensus 232 ---------~C~~vCPkgI~----~~~~I~~LRr~~v~r 257 (259)
+|+++||.|-- -.+.|...++++...
T Consensus 184 dRi~~G~~PACv~aCPtgAl~FG~R~ell~~A~~Ri~~~ 222 (329)
T PRK10882 184 ERLDKGGLPGCVEVCPTGAVIFGTREELLAEAKRRLALK 222 (329)
T ss_pred HHHHCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHC
T ss_conf 588789987045137423343258999999999999848
No 95
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein CcoG; InterPro: IPR014116 Member of this ferredoxin-like protein family, include FixG, CcoG and RdxA,. They are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else; it is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum..
Probab=96.29 E-value=0.00086 Score=43.84 Aligned_cols=40 Identities=38% Similarity=0.767 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf 6688888731313228200102221011478899988516888431388999622866527676647345518
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSC 237 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vC 237 (259)
..+-+||.|-.|+.+||+. .|=||..+- .|.+|++|.++|
T Consensus 240 ~~~GDCvdC~~CV~VCPTG--------------------IDIRdGlQl-------------ECInC~~CIDAC 279 (474)
T TIGR02745 240 KPLGDCVDCNLCVQVCPTG--------------------IDIRDGLQL-------------ECINCGLCIDAC 279 (474)
T ss_pred CCCCCCCCCCCCCCCCCCC--------------------EECCCCCHH-------------HHHHHHHHHHHH
T ss_conf 7478624776554242572--------------------022334246-------------543177687444
No 96
>PRK06991 ferredoxin; Provisional
Probab=96.27 E-value=0.00053 Score=45.18 Aligned_cols=48 Identities=21% Similarity=0.528 Sum_probs=32.3
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
-..||.|..|..+||+= ..+|-..+ +..+..+ .||.|..|...||.+.
T Consensus 84 E~~CIGCT~CI~aCPVD-----AIvGA~k~------------------mHtVi~d----~CTGCeLCI~pCPvDC 131 (274)
T PRK06991 84 EQLCIGCTLCMQACPVD-----AIVGAPKQ------------------MHTVVAD----LCTGCDLCVPPCPVDC 131 (274)
T ss_pred CCCCCCCHHHHHCCCCH-----HEECCCCC------------------CEEECHH----HCCCCCCCCCCCCCCC
T ss_conf 88781720343119800-----15526776------------------6165642----1899672456698320
No 97
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.17 E-value=0.0013 Score=42.72 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=39.2
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCCCCCC------C---CHH
Q ss_conf 66888887313132282001022210114788999885168884313889996228665-2767664------7---345
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFR-LYRCHTI------M---NCT 234 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~g-i~~C~~C------~---~C~ 234 (259)
.+-..||.|+.|..+||--. .|+.+ ..+ ++.|+.| | +|+
T Consensus 97 vd~d~CIGC~yCi~ACPyga----~~~~~---------------------------~~~~~~KCt~C~~ri~~g~~PaCV 145 (203)
T COG0437 97 VDKDLCIGCGYCIAACPYGA----PQFNP---------------------------DKGVVDKCTFCVDRVAVGKLPACV 145 (203)
T ss_pred ECCCCCCCCHHHHHHCCCCC----CEECC---------------------------CCCCCCCCCCCHHHHHCCCCCCEE
T ss_conf 65872247347786499888----56576---------------------------667123467617677559997400
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 518997888999999999
Q gi|254781044|r 235 QSCPKGLNPAKAIAKIKM 252 (259)
Q Consensus 235 ~vCPkgI~~~~~I~~LRr 252 (259)
++||.+--.-..|.+++.
T Consensus 146 ~~CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 146 EACPTGALIFGDIDDPKS 163 (203)
T ss_pred CCCCCCCCCCCCHHHCCH
T ss_conf 148866541152221214
No 98
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=96.14 E-value=0.00084 Score=43.93 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=21.5
Q ss_pred CCCCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 2767664734551899788899999999
Q gi|254781044|r 224 LYRCHTIMNCTQSCPKGLNPAKAIAKIK 251 (259)
Q Consensus 224 i~~C~~C~~C~~vCPkgI~~~~~I~~LR 251 (259)
--.|..|+.|+++||.++.|..+-...+
T Consensus 371 ~~~CIRCg~Cv~~CPm~L~P~~L~~~A~ 398 (444)
T TIGR01945 371 EKPCIRCGKCVNVCPMGLLPQQLNWLAK 398 (444)
T ss_pred CCCCCCHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 6788440010155674422799998753
No 99
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=96.13 E-value=0.0024 Score=41.09 Aligned_cols=91 Identities=23% Similarity=0.392 Sum_probs=56.3
Q ss_pred CCCEECC-CCCCCCEEEEEEEEECCCCCCCC-CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-EE
Q ss_conf 3720227-77886079999986368888887-368998642678811678999999732876388404567735443-03
Q gi|254781044|r 14 RGKIWNA-PTGEKNLKEYRIYRWNPDNKGNP-CMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSC-GM 90 (259)
Q Consensus 14 ~G~~~~~-~~~~~~~~~~~i~R~~p~~~~~~-~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsC-a~ 90 (259)
+++.+-+ +.+....||+..- +.. .-.++ .....||||+=++..- +|= |+|..||||+| |-
T Consensus 268 ~~~~~~~~~~g~~~~vtv~~D-------G~~Gr~~~~----~a~~~SvLdaAlr~r~----DlP--fACkgGVCgTCrAk 330 (371)
T TIGR02160 268 EVRHEVEDPEGDQAKVTVTLD-------GLSGREISL----SAEDESVLDAALRARP----DLP--FACKGGVCGTCRAK 330 (371)
T ss_pred CCCCEECCCCCCCCEEEEEEE-------CCCCCEEEC----CCCCCCHHHHHHHCCC----CCC--CCCCCCCCCCEEEE
T ss_conf 872101388899526999970-------887614402----4466502579985588----887--11578835120478
Q ss_pred EECCCCCCCCCCCHHCCCCCEEEEEC----------CCCEEEEEEEEEHH
Q ss_conf 14361266321100004785189864----------89804411245104
Q gi|254781044|r 91 NIDGTNTLACVKDMKDIKGAIAVYPL----------PHMSVIKDLVVDMS 130 (259)
Q Consensus 91 ~iNG~~~LAC~t~~~~~~~~i~iePl----------~~~pVikDLvVD~~ 130 (259)
.+.|+ ..|+. .-+|||- ..+|++-+||||.+
T Consensus 331 v~~G~------v~M~~---NYaLE~~ev~AGYvLtCQa~P~~~~lvvdyD 371 (371)
T TIGR02160 331 VLEGK------VEMEK---NYALEPDEVDAGYVLTCQALPLSDKLVVDYD 371 (371)
T ss_pred EEECE------EEECC---CCCCCCCHHHCCCEEECCCCCCCCEEEEECC
T ss_conf 87251------42055---7578850232374300046567561377219
No 100
>PRK06273 ferredoxin; Provisional
Probab=96.12 E-value=0.00056 Score=45.01 Aligned_cols=93 Identities=19% Similarity=0.364 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC---CCCCH-HHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 0479998875421034666311011---12207-7765446688888731313228200102221011478899988516
Q gi|254781044|r 129 MSHFYSQHRSIEPWLKTVSPKPAKE---LLQSH-EDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLI 204 (259)
Q Consensus 129 ~~~~~~~~~~~~p~~~~~~~~~~~e---~~qsp-ed~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~ 204 (259)
.+.+|++++++- +.++. ....| .+.+- -+..+.-.-..||.||-|.++||+-+.. ..-+.|-.+...|-
T Consensus 11 l~G~Y~NleRIi--fgsdr-~Td~Emr~~IL~G~Ve~~~~V~e~~CIGC~GCaNvCPT~AIe-M~~~ePVkite~~v--- 83 (163)
T PRK06273 11 ISGIYENLERII--FGSDR-YTSKEMRAEILTGNVELPKKVFEELCIGCGGCANACPTKAIE-MIPVEPVKITETYV--- 83 (163)
T ss_pred HHHHHHHHHHHE--ECCCC-CCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCEEEECCHH---
T ss_conf 987775145403--33675-330999999972875687667588643655500238877557-77656567411033---
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 88843138899962286652767664734551899
Q gi|254781044|r 205 DSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK 239 (259)
Q Consensus 205 D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk 239 (259)
.+.+..++ -..|..|+.|.+.||.
T Consensus 84 -------K~~iP~id----~ekCV~C~yCHDFCPv 107 (163)
T PRK06273 84 -------KEAIPKID----YEKCVYCLYCHDFCPV 107 (163)
T ss_pred -------HHCCCCCC----HHHEEEEEECCCCCHH
T ss_conf -------31266467----3320798873652438
No 101
>PRK08764 ferredoxin; Provisional
Probab=96.07 E-value=0.00075 Score=44.21 Aligned_cols=47 Identities=21% Similarity=0.573 Sum_probs=31.1
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..||.||.|..+||.=...+. +. .+..+..+ .||.|+.|..+||+++
T Consensus 86 ~~CiGcg~Ci~aCpfDAI~~~----~~-------------------~~~~V~~~----~CtGCg~Cv~~CP~~~ 132 (138)
T PRK08764 86 ADCIGCTKCIQACPVDAIVGG----AK-------------------HMHTVIAP----LCTGCELCVPACPVDC 132 (138)
T ss_pred CCCCCCCHHHHHCCCCCEECC----CC-------------------CCEEECHH----HCCCCCHHHHHCCCCH
T ss_conf 888773978741995517558----88-------------------88265865----6878356556467133
No 102
>PRK07118 ferredoxin; Validated
Probab=96.02 E-value=0.00059 Score=44.89 Aligned_cols=16 Identities=25% Similarity=0.870 Sum_probs=11.9
Q ss_pred CCCCCCCHHHHCCCCC
Q ss_conf 6766473455189978
Q gi|254781044|r 226 RCHTIMNCTQSCPKGL 241 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI 241 (259)
.|+.|+.|.++||.+.
T Consensus 243 kC~~CG~Cv~~CPt~a 258 (276)
T PRK07118 243 KCTSCGKCVEKCPTKA 258 (276)
T ss_pred HCCHHHHHHHHCCHHH
T ss_conf 4864669987686245
No 103
>PRK13984 putative oxidoreductase; Provisional
Probab=96.00 E-value=0.0029 Score=40.62 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=25.2
Q ss_pred CCCCCCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 7676647345518997888999999999
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGLNPAKAIAKIKM 252 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI~~~~~I~~LRr 252 (259)
-+|..|+.|...||.++++.+.|..+.+
T Consensus 185 ~RCl~Cg~C~~~CP~~n~IP~~i~lv~~ 212 (604)
T PRK13984 185 ARCVECGICTDTCPAHMQIPDYIKAIYK 212 (604)
T ss_pred HHCCCCHHHHCCCCCCCCHHHHHHHHHC
T ss_conf 8725880210079999976899999987
No 104
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit; InterPro: IPR010207 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the B subunit.; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=95.98 E-value=0.0016 Score=42.26 Aligned_cols=46 Identities=26% Similarity=0.711 Sum_probs=32.4
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCH-HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 888887313132282001022210114-78899988516888431388999622866527676647345518997
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGP-AILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP-~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
-.+||.|-.|..+||+ |.-+|- +++.- .+.+ .||.|-.|.+.||.+
T Consensus 124 E~~CIGCTKCiqaCPV-----DAIVGa~k~mHT------------------Vi~d-----~CTGCdLCv~pCPtd 170 (213)
T TIGR01944 124 EENCIGCTKCIQACPV-----DAIVGAAKAMHT------------------VIAD-----ECTGCDLCVEPCPTD 170 (213)
T ss_pred CCCCCCCCCCCCCCCC-----CCCCCCCCHHHH------------------HHHH-----HCCCCCCCCCCCCCC
T ss_conf 6768485422345885-----301067860301------------------2564-----357832224576967
No 105
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.95 E-value=0.0024 Score=41.11 Aligned_cols=16 Identities=31% Similarity=0.964 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHCCCCC
Q ss_conf 6766473455189978
Q gi|254781044|r 226 RCHTIMNCTQSCPKGL 241 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI 241 (259)
.|..||.|..+||.|.
T Consensus 538 ~Ci~CG~C~~~CP~ga 553 (560)
T PRK12771 538 KCTGCHICSDVCPTGY 553 (560)
T ss_pred HCCCCCCHHHHCCCCC
T ss_conf 4667462142289873
No 106
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=95.86 E-value=0.0027 Score=40.73 Aligned_cols=52 Identities=25% Similarity=0.565 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 4668888873131322820010222101147889998851688843138899962286652767664734551899788
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~ 242 (259)
+.+...||.|+.|.-.||...... ++. .+..++ .-.|..||.|+++||.+..
T Consensus 52 V~d~ekCi~C~~Cw~yCPD~aI~~-------------------~~~----k~~~iD----YdyCKGCGICa~vCP~~~k 103 (130)
T PRK09625 52 VHNNDICINCFNCWVYCPDASILS-------------------RDK----KLKGVD----YSHCKGCGVCVDVCPTNPK 103 (130)
T ss_pred CCCHHHCCCCCHHHCCCCCCEEEE-------------------ECC----EEEEEC----HHHCCCCCHHHHHCCCCCC
T ss_conf 517535897230003089837882-------------------389----135657----6770062214654799960
No 107
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.78 E-value=0.0034 Score=40.11 Aligned_cols=44 Identities=18% Similarity=0.468 Sum_probs=27.2
Q ss_pred HHHHHHHCCCHHHCCCEEE---CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 8888873131322820010---2221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWW---NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~---~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
..+|+.||.|..+|+--.. .+..| ..+ -..|..|+.|..+||.+
T Consensus 68 ~e~C~~CG~C~~vC~f~Ai~~~~~~~~------------~~~------------------~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 68 PEKCIRCGKCAEVCRFGAIVVLPGGKP------------VLN------------------PDLCEGCGACSIVCPEP 114 (284)
T ss_pred HHHCCCCCCHHHHCCCCEEEECCCCCE------------ECC------------------CCCCCCCCCCEEECCCC
T ss_conf 577430172687678880897378860------------028------------------02026766333247876
No 108
>PRK07118 ferredoxin; Validated
Probab=95.60 E-value=0.0022 Score=41.30 Aligned_cols=65 Identities=20% Similarity=0.429 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC-CC
Q ss_conf 688888731313228200102221011478899988516888431388999622866527676647345518997-88
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG-LN 242 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg-I~ 242 (259)
+...|+.||.|..+||..... +-|..- ..+..-.++|.....+ ..- + -.|..|+.|+.+||.+ |.
T Consensus 166 d~~~C~~Cg~C~~~CP~~~I~----~~p~~~--~~~V~C~s~dkg~~v~--~~C-~---~gCIgC~~C~k~CP~~AI~ 231 (276)
T PRK07118 166 DEEKCTGCGACVKACPKNVIE----LIPKSA--RVFVACNSKDKGKAVK--KVC-E---VGCIGCGKCVKACPAEAIT 231 (276)
T ss_pred EHHHCCCCCHHHHHCCHHHHH----CCCCCC--CEEEECCCCCCHHHHH--HHH-C---CCCCCCHHHHHHCCCCCEE
T ss_conf 165688846044464755763----176666--2477545665337788--630-1---2586627888758826499
No 109
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=95.58 E-value=0.0044 Score=39.44 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=33.0
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
-.+|+.||.|++-||+.+... | +.. .+ +.-.|..|+.|.++||-|.
T Consensus 192 e~kc~~c~~cv~~cp~~Ai~~--~-------~~~----------------~I----~~~~ci~c~~c~~ac~~ga 237 (354)
T COG2768 192 EEKCYDCGLCVKICPVGAITL--T-------KVV----------------KI----DYEKCIGCGQCMEACPYGA 237 (354)
T ss_pred EECCCCCCHHHHHCCCCCEEC--C-------CCE----------------EE----CHHHCCCHHHHHHHCCCCC
T ss_conf 311035313666387751111--0-------013----------------53----3233543022554366765
No 110
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=95.50 E-value=0.0035 Score=40.10 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=55.2
Q ss_pred CCEEEEECCCCEEEE------EEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH--HC
Q ss_conf 851898648980441------1245104799988754210346663110111220777654466888887313132--28
Q gi|254781044|r 109 GAIAVYPLPHMSVIK------DLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCST--SC 180 (259)
Q Consensus 109 ~~i~iePl~~~pVik------DLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~s--aC 180 (259)
|-+.+.|-.+-.|=| |=.|-----.+---.++.|+.|-+-+.+.=.-..|-.. +-.+|=.|+.|.. +|
T Consensus 87 D~LivsPAT~NTVaKia~GIADsLVTNAvaQAgKG~Vpv~vVPvDye~gii~T~~PY~i----drk~Ck~C~~C~~re~C 162 (237)
T TIGR02700 87 DLLIVSPATANTVAKIAYGIADSLVTNAVAQAGKGDVPVLVVPVDYEEGIISTKLPYAI----DRKKCKLCEKCVDREAC 162 (237)
T ss_pred CEEEECCCCCCCHHHEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCHHH----HHHHCCCCCCCCCCCCC
T ss_conf 65787585102001100021003567677522377543588875214776652076156----68741247889873457
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 181 PSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 181 P~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
|.-+- +.+|... |.--|-.|..||.|.++||-+
T Consensus 163 P~~AI-------------------~~~dg~~--------d~I~LlkC~GCG~Cke~CPyn 195 (237)
T TIGR02700 163 PREAI-------------------SKKDGVV--------DEIRLLKCVGCGKCKEVCPYN 195 (237)
T ss_pred CCHHH-------------------HHCCCCC--------CEEEEEECCCCCCCCCCCCHH
T ss_conf 71133-------------------4107810--------111001024788753358544
No 111
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=95.45 E-value=0.0052 Score=38.99 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCCH--HHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 6688888731313--228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 165 DGLYECVMCACCS--TSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 165 ~~~~~CI~CG~C~--saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
-+...|..||.|. +.||+....+ .+ ..+ |. .|+.|+.|.++||.+
T Consensus 547 In~~vC~gCg~C~~~s~Cpai~~~~------------------~k--------~~i-d~----~Cngc~~C~~~CP~~ 593 (595)
T TIGR03336 547 VDQDKCIGCKKCIKELGCPAIEPED------------------KE--------AVI-DP----LCTGCGVCAQICPFD 593 (595)
T ss_pred ECHHHCCCCCCCCCCCCCCEEEECC------------------CE--------EEE-CC----CCCCCCCHHHHCCCC
T ss_conf 7353278840003343782177359------------------90--------788-85----054977446548898
No 112
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=95.34 E-value=0.0011 Score=43.23 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHCCCCCC
Q ss_conf 67664734551899788
Q gi|254781044|r 226 RCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI~ 242 (259)
.|+.|+.|..+||-+|+
T Consensus 145 ~CiGC~~C~~aCP~~iP 161 (329)
T PRK10882 145 VCTGCRYCMVACPFNVP 161 (329)
T ss_pred EECCCCHHHHCCCCCCC
T ss_conf 00771067543999997
No 113
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=95.27 E-value=0.0029 Score=40.54 Aligned_cols=51 Identities=24% Similarity=0.516 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCH--HHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 446688888731313--228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 163 KIDGLYECVMCACCS--TSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 163 ~~~~~~~CI~CG~C~--saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
..-+...|..|+.|. +.||+....+. + . ..+++.+ .|..|+.|.++||.+
T Consensus 572 ~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~-------------------k~~id~~-------~C~GCg~C~~iCP~~ 623 (640)
T COG4231 572 YFVDEEKCTGCGDCIVLSGCPSIEPDPT-F-K-------------------KARIDPS-------SCNGCGSCVEVCPSF 623 (640)
T ss_pred CEECHHHCCCCHHHHHHCCCCEEEECCC-C-C-------------------CEEECCC-------CCCCCHHHHHCCCHH
T ss_conf 1206321487688886128865765587-7-7-------------------3343610-------035760223008645
Q ss_pred C
Q ss_conf 8
Q gi|254781044|r 241 L 241 (259)
Q Consensus 241 I 241 (259)
.
T Consensus 624 a 624 (640)
T COG4231 624 A 624 (640)
T ss_pred H
T ss_conf 4
No 114
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.14 E-value=0.0034 Score=40.18 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHC---CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-----CCCCCCCCH
Q ss_conf 5446688888731---31322820010222101147889998851688843138899962286652-----767664734
Q gi|254781044|r 162 QKIDGLYECVMCA---CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRL-----YRCHTIMNC 233 (259)
Q Consensus 162 ~~~~~~~~CI~CG---~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi-----~~C~~C~~C 233 (259)
+...++.+|++|| .|...||+...= |..+...+ ..+ -.+-++.+...+.+ .=|.+=..|
T Consensus 219 ~A~~EA~RCl~Cg~~p~C~~~CP~~~dI------P~~I~~i~----~g~---~~eA~~~i~~tN~lP~icGRVCP~~~~C 285 (654)
T PRK12769 219 QAQREASRCLKCGEHSICEWTCPLHNHI------PQWIELVK----AGN---IDAAVELSHQTNTLPEITGRVCPQDRLC 285 (654)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCH------HHHHHHHH----CCC---HHHHHHHHHHHCCCHHHHCCCCCCCCCH
T ss_conf 9999999976799986110179999987------99999998----789---9999999987688026435668997656
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHHHC
Q ss_conf 5518997888-99999999999861
Q gi|254781044|r 234 TQSCPKGLNP-AKAIAKIKMMLLDR 257 (259)
Q Consensus 234 ~~vCPkgI~~-~~~I~~LRr~~v~r 257 (259)
+..|=.+..- .=.|..|+|.+.+.
T Consensus 286 E~aC~~~~~~~pVaIg~LERfiaD~ 310 (654)
T PRK12769 286 EGACTLRDEHGAVTIGNIERYISDQ 310 (654)
T ss_pred HHHCCCCCCCCCEEECHHHHHHHHH
T ss_conf 8864089998983766889999889
No 115
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=95.13 E-value=0.022 Score=35.14 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCEEEEECC-CCEEEEE----E-EEE--
Q ss_conf 1167899999973287638840456773544303143612663211000047851898648-9804411----2-451--
Q gi|254781044|r 57 PMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLP-HMSVIKD----L-VVD-- 128 (259)
Q Consensus 57 ~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~i~iePl~-~~pVikD----L-vVD-- 128 (259)
+-+.+.+.|+-|+---+ .| -+||-|=-=+ ..|+..+-. =.+.||+ -+.|||- . |||
T Consensus 251 ~p~~~i~dYleEn~~eD-~v------e~~GiCCtA~-------D~TRy~~ka--Kvvgpls~QL~~iRaG~aDV~v~DEQ 314 (795)
T TIGR00314 251 LPGADIADYLEENGMED-EV------ELCGICCTAI-------DMTRYNEKA--KVVGPLSRQLRVIRAGVADVIVVDEQ 314 (795)
T ss_pred CCHHHHHHHHHHCCCCC-CE------EEECCCCCCC-------CHHHHCCCC--CEECCCHHCEEEEECCCCCEEEECCC
T ss_conf 45125788875168403-04------5303000431-------010010478--34532010104435178737997473
Q ss_pred --HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHH-HHHHHHHHCCCHHHCC-CEEECCCCCCCHHHHHHHHHHH
Q ss_conf --047999887542103466631101-1122077765446-6888887313132282-0010222101147889998851
Q gi|254781044|r 129 --MSHFYSQHRSIEPWLKTVSPKPAK-ELLQSHEDRQKID-GLYECVMCACCSTSCP-SYWWNSDRYLGPAILLQAYRWL 203 (259)
Q Consensus 129 --~~~~~~~~~~~~p~~~~~~~~~~~-e~~qsped~~~~~-~~~~CI~CG~C~saCP-~~~~~~~~flGP~~l~~a~r~~ 203 (259)
|..+.+..++...-+...++.-.. -.=+|.++.+++- .|-+ ..-| ++..++.+-..-++.+.- .+
T Consensus 315 CiRaD~Le~~~K~g~~~IaT~~k~~~gLpD~~~~~~~~Iv~~L~~--------g~~~g~llldp~KVG~VAv~vA~--~~ 384 (795)
T TIGR00314 315 CIRADILEEVKKLGIPLIATNDKACLGLPDVSDEDPDKIVDYLLS--------GNLPGALLLDPEKVGEVAVEVAK--AV 384 (795)
T ss_pred CHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCHHHHHHHHHC--------CCCCEEEEECCCCCCCHHHHHHH--HH
T ss_conf 012789999986586067341788513877776887789999853--------88657886073225634588999--87
Q ss_pred CCCC-CC---C----HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 6888-43---1----388999622866527676647345518997888999999999
Q gi|254781044|r 204 IDSR-DE---F----QGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKM 252 (259)
Q Consensus 204 ~D~r-D~---~----~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr 252 (259)
.-.| |. . .++-++. +-.||.||+|+.+||.++.+.+++..-..
T Consensus 385 ~k~r~~~rk~k~~~~~~~~~E~------a~~CT~Cg~C~~~CP~~l~v~~am~~A~~ 435 (795)
T TIGR00314 385 AKKRKDERKIKKLPDEEELMEL------AKKCTQCGNCTRACPNSLRVKEAMAKAEK 435 (795)
T ss_pred HHCCCCCCCCCCCCCHHHHHHH------HHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 2103774334777777899999------98367887754458786517999999973
No 116
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=95.09 E-value=0.0062 Score=38.52 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=31.4
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
...||.||.|..+||+-... +..+. +.. . ....+ .-.|+.|+.|..+||.+.
T Consensus 28 ~~~Ci~Cg~C~~~CP~~ai~---------------~~~~~-~~~--~--~~~~~---~~~C~~C~~C~~~Cp~~a 79 (99)
T COG1145 28 AEKCIGCGLCVKVCPTGAIE---------------LIEEG-LLL--P--EVVID---PDLCVLCGACLKVCPVDA 79 (99)
T ss_pred CCCCCCCCCHHHHCCHHHHH---------------HCCCC-CCC--C--EEEEC---CCCCCCHHHHHHHCCCCH
T ss_conf 00198686345457688875---------------22134-667--5--15458---020534578884499642
No 117
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein; InterPro: IPR004494 MauM ferredoxin-type protein is involved in methylamine utilization. NapG ferredoxin-type protein is associated with nitrate reductase activity.; GO: 0006118 electron transport.
Probab=94.64 E-value=0.01 Score=37.25 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf 12207776544668888873131322820
Q gi|254781044|r 154 LLQSHEDRQKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 154 ~~qsped~~~~~~~~~CI~CG~C~saCP~ 182 (259)
.+-.|--...-+-.+.||+||.|+.+||.
T Consensus 39 ~lRPPGALpE~dF~aACv~CGLCV~~CP~ 67 (213)
T TIGR00397 39 VLRPPGALPEKDFLAACVRCGLCVEACPY 67 (213)
T ss_pred EECCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf 54588888772102001004662210641
No 118
>PRK05802 hypothetical protein; Provisional
Probab=94.34 E-value=0.011 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=12.0
Q ss_pred CCCCEEEEE---------EEEEHHHHHH
Q ss_conf 489804411---------2451047999
Q gi|254781044|r 116 LPHMSVIKD---------LVVDMSHFYS 134 (259)
Q Consensus 116 l~~~pVikD---------LvVD~~~~~~ 134 (259)
.|..||||- .++|.++|-.
T Consensus 186 AP~vpVikkL~~n~NkV~vIid~~~~~~ 213 (328)
T PRK05802 186 APAVPVIKKLYSNGNKVIVILDKGPFEN 213 (328)
T ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 5555999999868997999985885531
No 119
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=94.19 E-value=0.097 Score=31.12 Aligned_cols=60 Identities=28% Similarity=0.539 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE----CC---------CCCCCCCCCHHCCCCC--EEEEECC
Q ss_conf 788116789999997328763884045677354430314----36---------1266321100004785--1898648
Q gi|254781044|r 54 NCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI----DG---------TNTLACVKDMKDIKGA--IAVYPLP 117 (259)
Q Consensus 54 ~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i----NG---------~~~LAC~t~~~~~~~~--i~iePl~ 117 (259)
++.+||||=|+.-.. .-+| -=+|-+|=||+|+|+| +| +.+=||.+.|..+++. +|||=|.
T Consensus 16 ~P~~TlL~yLR~~~~-ltGT---KEGCaEGDCGACTVvvGeL~~~~~g~~~l~y~sVNACi~F~~~LdG~al~TVEdL~ 90 (515)
T TIGR02963 16 DPTRTLLDYLREDAG-LTGT---KEGCAEGDCGACTVVVGELVDGGDGQKKLRYRSVNACIQFLPSLDGKALVTVEDLR 90 (515)
T ss_pred CCCCCHHHHHHHHCC-CCCC---CCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCEEEEEECCC
T ss_conf 854535689898577-9857---33358889622457988624674401221232121132201212884799871046
No 120
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.12 E-value=0.017 Score=35.81 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 68888873131322820010222101147889998851688843138899962286652767664734551899788
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~ 242 (259)
+...|++||.|.. ||--...- + + ...+ --.|..||-|+.+||.|.-
T Consensus 559 de~~C~gC~~C~~-Cpf~ais~-----------------~-k---------a~v~---~~~C~gCG~C~~aCp~gai 604 (622)
T COG1148 559 DEDKCTGCGICAE-CPFGAISV-----------------D-K---------AEVN---PLRCKGCGICSAACPSGAI 604 (622)
T ss_pred CHHHHCCCCCEEE-CCCCCEEC-----------------C-C---------CCCC---HHHHCCCCCHHHHCCCCCC
T ss_conf 6656067860212-79885531-----------------2-2---------5468---3673756631421873600
No 121
>COG1146 Ferredoxin [Energy production and conversion]
Probab=93.90 E-value=0.0092 Score=37.46 Aligned_cols=50 Identities=22% Similarity=0.550 Sum_probs=30.6
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 88888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
...|+.||.|+.+||...... +..- +. +. ...+ .-.|+.|+.|..+||.+
T Consensus 7 ~~~C~~c~~C~~~CP~~~~~~----~~~~---------~~-------~~-~~~~---~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 7 YDKCIGCGICVEVCPAGVFDL----GEDE---------GG-------KP-VVAR---PEECIDCGLCELACPVG 56 (68)
T ss_pred HHHCCCCCEEEEECCCCCEEC----CCCC---------CC-------CE-EEEC---HHHCCCCCCHHHHCCCC
T ss_conf 688689984277288760883----2225---------77-------16-8876---46686556134448867
No 122
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=93.90 E-value=0.034 Score=33.96 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=22.7
Q ss_pred CCCCCCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 7676647345518997888999999999
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGLNPAKAIAKIKM 252 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI~~~~~I~~LRr 252 (259)
..|..||.|+++||.++-|..+-...|.
T Consensus 376 ~~CIRCG~Cv~aCP~~LlPqqL~w~ak~ 403 (725)
T PRK05035 376 QACIRCGACADACPASLLPQQLYWFAKA 403 (725)
T ss_pred CCCCCCCHHHHHCCCCCCHHHHHHHHHC
T ss_conf 7775251367638997779999999876
No 123
>PRK10194 ferredoxin-type protein; Provisional
Probab=93.71 E-value=0.016 Score=36.05 Aligned_cols=55 Identities=22% Similarity=0.581 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 54466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 162 QKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 162 ~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+..+-+..|++||.|+++||.-..... .+. +-.++ .....|+.|+.|.++||.|+
T Consensus 29 ~e~~F~~~CtrCg~Cv~aCp~~ii~~~---------------~~g--------~P~ld--f~~~~C~~C~~C~~aCPtga 83 (164)
T PRK10194 29 DESHFLTHCTRCDACINACENNILQRG---------------AGG--------YPSVN--FKNNECSFCYACAQACPESL 83 (164)
T ss_pred CHHHHHHHCCCHHHHHHHCCHHHHCCC---------------CCC--------CEEEE--ECCCCCCCCHHHHHHCCHHH
T ss_conf 789999878568499987399874228---------------899--------55887--46788888346787757754
No 124
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=93.64 E-value=0.036 Score=33.78 Aligned_cols=24 Identities=33% Similarity=0.937 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCE
Q ss_conf 765446688888731313228200
Q gi|254781044|r 160 DRQKIDGLYECVMCACCSTSCPSY 183 (259)
Q Consensus 160 d~~~~~~~~~CI~CG~C~saCP~~ 183 (259)
+..+.+.+.+||+||.|.-+||+.
T Consensus 396 ~e~~~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 396 DEEEEHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred HHHHHHHHHHHHHHCCCHHCCCCC
T ss_conf 688887766525507311007777
No 125
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=93.48 E-value=0.015 Score=36.09 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 4466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 163 KIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 163 ~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
++-+ ..|..||+|.++||+-..| +|---....+| +..|--.+-. ....+ -...|..|+.|..+||.+.
T Consensus 220 ryVd-d~CtgCg~C~~vCPve~~n--efn~Gl~~~kA---iy~p~~qaVp-~~~~I----d~~~c~~c~~C~~ac~~~a 287 (622)
T COG1148 220 RYVD-DKCTGCGACSEVCPVEVPN--EFNEGLGKRKA---IYIPFPQAVP-LNYNI----DPKHCIECGLCEKACPNEA 287 (622)
T ss_pred CCCC-CCCCCCCCCCCCCCCCCCC--CCCCCCCCCEE---EECCCHHHCC-CCCCC----CHHHHCCCHHHHHCCCCCC
T ss_conf 2001-1265532222347765675--10125453235---6425645525-45321----7165021035664399300
No 126
>PRK09898 hypothetical protein; Provisional
Probab=93.41 E-value=0.0064 Score=38.45 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHCCCCCCH
Q ss_conf 676647345518997888
Q gi|254781044|r 226 RCHTIMNCTQSCPKGLNP 243 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI~~ 243 (259)
.|+.|+.|..+||-|+..
T Consensus 155 ~CigC~~C~~aCP~~~~~ 172 (208)
T PRK09898 155 RCIGCSACTTACPWMMAT 172 (208)
T ss_pred HCCCCCHHHHHCCCCCCE
T ss_conf 680411899739999857
No 127
>TIGR02484 CitB CitB domain protein; InterPro: IPR012830 This entry identifies proteins that are decribed as citrate utilization protein B, restricted to the proteobacteria. CitB has been identified in Salmonella and Escherichia coli as the signal transduction component of a two-component system for citrate in which CitA acts as a citrate transporter. This domain is also a C-terminal domain in the Rhodobacter capsulatus CobZ gene, which in most other species exists as the separate CitB gene adjacent to CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterised precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate..
Probab=93.15 E-value=0.054 Score=32.68 Aligned_cols=73 Identities=22% Similarity=0.456 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHC--
Q ss_conf 765446688888731313228200102221011478899988516888431388999622866527676647345518--
Q gi|254781044|r 160 DRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSC-- 237 (259)
Q Consensus 160 d~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vC-- 237 (259)
|++++ +.=|--|+.|..-|++|.+-.- |-.+|.-|.. .|.. -|++|+.|--.|
T Consensus 8 EA~Rv--L~lC~~C~YC~GLC~VFpA~~r------------r~~l~~GD~~---~LAn--------LCH~C~aC~HaCQY 62 (392)
T TIGR02484 8 EAKRV--LRLCNACGYCDGLCAVFPAAER------------RPLLTVGDLA---HLAN--------LCHHCQACWHACQY 62 (392)
T ss_pred HHHHH--HHHCCCCCCCCCCCCCCHHHCC------------CCCCCHHHHH---HHHH--------HCCCCCCCCCCCCC
T ss_conf 99999--9862657776776621133057------------8677642499---9986--------41466764532468
Q ss_pred ----CCCCCHHHHHHHHHHHHHHC
Q ss_conf ----99788899999999999861
Q gi|254781044|r 238 ----PKGLNPAKAIAKIKMMLLDR 257 (259)
Q Consensus 238 ----PkgI~~~~~I~~LRr~~v~r 257 (259)
+-.|++..-..++|++-..+
T Consensus 63 APPH~FAvnvP~TLA~~R~~~ya~ 86 (392)
T TIGR02484 63 APPHEFAVNVPATLAEVRAESYAE 86 (392)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 878855452304589999997342
No 128
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=93.14 E-value=0.045 Score=33.22 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCCHHHCCC
Q ss_conf 44668888873131322820
Q gi|254781044|r 163 KIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 163 ~~~~~~~CI~CG~C~saCP~ 182 (259)
-..+...||.|+.|..+||-
T Consensus 120 V~vd~~~CiGC~~C~~aCPy 139 (225)
T TIGR03149 120 VDVHKDLCVGCQYCIAACPY 139 (225)
T ss_pred EEEEHHHCCCHHHHHHCCCC
T ss_conf 99756869404189861999
No 129
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=92.89 E-value=0.028 Score=34.49 Aligned_cols=14 Identities=36% Similarity=1.196 Sum_probs=7.1
Q ss_pred HHHHHHCCCHHHCC
Q ss_conf 88887313132282
Q gi|254781044|r 168 YECVMCACCSTSCP 181 (259)
Q Consensus 168 ~~CI~CG~C~saCP 181 (259)
.+||.||.|..-||
T Consensus 134 ~kCIGCgyCi~GCP 147 (293)
T TIGR01582 134 EKCIGCGYCIVGCP 147 (293)
T ss_pred CCEECCCCCCCCCC
T ss_conf 86000673025878
No 130
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=92.81 E-value=0.025 Score=34.78 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHCCCHHHCCCE
Q ss_conf 65446688888731313228200
Q gi|254781044|r 161 RQKIDGLYECVMCACCSTSCPSY 183 (259)
Q Consensus 161 ~~~~~~~~~CI~CG~C~saCP~~ 183 (259)
....+-+..||.||.|+.+||.-
T Consensus 52 l~E~~FL~~CirCG~Cv~aCPy~ 74 (254)
T PRK09476 52 LNENDFLSACIRCGLCVQACPYD 74 (254)
T ss_pred CCHHHHHHHCCHHCCHHHHCCHH
T ss_conf 77699999630324036558762
No 131
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=92.17 E-value=0.0056 Score=38.79 Aligned_cols=17 Identities=29% Similarity=0.745 Sum_probs=12.5
Q ss_pred HHHHHHC--CCHHHCCCEE
Q ss_conf 8888731--3132282001
Q gi|254781044|r 168 YECVMCA--CCSTSCPSYW 184 (259)
Q Consensus 168 ~~CI~CG--~C~saCP~~~ 184 (259)
..|.+|. .|+.+||+-.
T Consensus 92 ~~C~HC~~p~C~~vCP~~A 110 (225)
T TIGR03149 92 KSCQHCDNAPCVAVCPTGA 110 (225)
T ss_pred CCCCCCCCCHHHHHCCCCC
T ss_conf 6788987945575588584
No 132
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.91 E-value=0.079 Score=31.69 Aligned_cols=12 Identities=25% Similarity=0.005 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254781044|r 243 PAKAIAKIKMML 254 (259)
Q Consensus 243 ~~~~I~~LRr~~ 254 (259)
+..+|.+=|+.+
T Consensus 448 vv~Ai~~Gr~AA 459 (472)
T PRK12810 448 VVWAIAEGRQAA 459 (472)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 133
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=91.78 E-value=0.044 Score=33.24 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEECCCC--CCCCCCCHHCCCCCEEEE
Q ss_conf 678811678999999732876388404-56773544303143612--663211000047851898
Q gi|254781044|r 53 DNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNIDGTN--TLACVKDMKDIKGAIAVY 114 (259)
Q Consensus 53 ~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~iNG~~--~LAC~t~~~~~~~~i~ie 114 (259)
-+.+.++|+++.+.--+ =|.+-|--. --+|.|--|-+.|.|.+ .-||.|.+.+ ++.|.
T Consensus 81 ~p~eeNLLeV~eraGI~-IPrFCYH~~LsiaGnCRMCLVEVEG~~klvaSCatpV~e---GM~V~ 141 (297)
T PTZ00305 81 IPQEENLLEVLEREGIR-VPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALP---GMSII 141 (297)
T ss_pred CCCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC---CCEEE
T ss_conf 57744099999985997-776657999885676337699968998887463764789---98886
No 134
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=91.72 E-value=0.078 Score=31.69 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+.+-..||.|-.|..+||+-.. ..++.++...+ .+ -||.|..|+..||.+.
T Consensus 111 ~i~e~~ciGCtkCiqaCpvdAi----vg~~~~mhtv~------------------~d-----lCTGC~lCva~CPtdc 161 (198)
T COG2878 111 LIDEANCIGCTKCIQACPVDAI----VGATKAMHTVI------------------AD-----LCTGCDLCVAPCPTDC 161 (198)
T ss_pred EECCHHCCCCHHHHHHCCHHHH----HCCCHHHHHHH------------------HH-----HHCCCCCCCCCCCCCC
T ss_conf 7512201443989984971443----12532578989------------------98-----8467776658798770
No 135
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=91.57 E-value=0.13 Score=30.33 Aligned_cols=21 Identities=33% Similarity=0.993 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHCCCHHHCCC
Q ss_conf 544668888873131322820
Q gi|254781044|r 162 QKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 162 ~~~~~~~~CI~CG~C~saCP~ 182 (259)
...+.+|.|..|+.|+.-||-
T Consensus 77 l~~~~lW~C~tCytC~eRCPr 97 (195)
T COG1150 77 LSSESLWACVTCYTCTERCPR 97 (195)
T ss_pred HCCCCCEEEEECHHHHHHCCC
T ss_conf 617740664101204301899
No 136
>KOG0430 consensus
Probab=91.55 E-value=0.41 Score=27.23 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=45.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC---------CCCCCCCCHHCCCC--CEEEEE
Q ss_conf 9986426788116789999997328763884045677354430314361---------26632110000478--518986
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGT---------NTLACVKDMKDIKG--AIAVYP 115 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~---------~~LAC~t~~~~~~~--~i~ieP 115 (259)
.|++..-++++|++.-|+. + -+-=+--.+|.+|-||+|.+++-.. .+=||-|.+..+.+ .+|+|=
T Consensus 11 ~~~~~~vdP~~TL~~fLR~---k-~~ltgtKlgC~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s~~g~~vtT~EG 86 (1257)
T KOG0430 11 RVEVELLPPDLTLNTFLRE---K-LGLTGTKLGCGEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNSVHGLEVTTSEG 86 (1257)
T ss_pred EEEEECCCCCHHHHHHHHH---H-CCCCCEEECCCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHCCCCCCEEEEEEEC
T ss_conf 8566238952359999997---4-58762332358998663599983047763268955012243324556547996204
Q ss_pred CCC
Q ss_conf 489
Q gi|254781044|r 116 LPH 118 (259)
Q Consensus 116 l~~ 118 (259)
|.+
T Consensus 87 lGn 89 (1257)
T KOG0430 87 LGN 89 (1257)
T ss_pred CCC
T ss_conf 666
No 137
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.37 E-value=0.17 Score=29.62 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCCCCCCC---HHHHCCCCCCHHHHHHHHHHH
Q ss_conf 76766473---455189978889999999999
Q gi|254781044|r 225 YRCHTIMN---CTQSCPKGLNPAKAIAKIKMM 253 (259)
Q Consensus 225 ~~C~~C~~---C~~vCPkgI~~~~~I~~LRr~ 253 (259)
-+|..|+. |...||.++++.+.|..+++.
T Consensus 225 ~RCl~Cg~~p~C~~~CP~~~dIP~~I~~i~~g 256 (654)
T PRK12769 225 SRCLKCGEHSICEWTCPLHNHIPQWIELVKAG 256 (654)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 99767999861101799999879999999878
No 138
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=91.32 E-value=0.069 Score=32.02 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=6.8
Q ss_pred CCHHHHHHHH
Q ss_conf 1147889998
Q gi|254781044|r 191 LGPAILLQAY 200 (259)
Q Consensus 191 lGP~~l~~a~ 200 (259)
-||..++++.
T Consensus 186 cGP~~Mm~~v 195 (248)
T cd06219 186 IGPPIMMKAV 195 (248)
T ss_pred ECCHHHHHHH
T ss_conf 4999999999
No 139
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=91.29 E-value=0.26 Score=28.45 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=4.4
Q ss_pred EEEEECCCCC
Q ss_conf 3884045677
Q gi|254781044|r 74 LTLRRSCREG 83 (259)
Q Consensus 74 l~fr~sCr~g 83 (259)
+.|+.+++-|
T Consensus 188 v~~~~~~~vG 197 (457)
T COG0493 188 VEFKLNVRVG 197 (457)
T ss_pred CEEEECCEEC
T ss_conf 0999866779
No 140
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.24 E-value=0.14 Score=30.06 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCC---CHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-----CCCCCCCCH
Q ss_conf 54466888887313---1322820010222101147889998851688843138899962286652-----767664734
Q gi|254781044|r 162 QKIDGLYECVMCAC---CSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRL-----YRCHTIMNC 233 (259)
Q Consensus 162 ~~~~~~~~CI~CG~---C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi-----~~C~~C~~C 233 (259)
+...++.+|++||- |...||+...= |..+..++ ..+- .+-++.+...+.+ .=|.+=..|
T Consensus 202 ~A~~eA~RCl~Cg~~~~C~~~CPv~~~I------P~~i~~i~----~g~~---~eA~~~i~~tN~lP~icGRVCP~~~~C 268 (639)
T PRK12809 202 QATYESDRCVYCAEKANCNWHCPLHNAI------PDYIRLVQ----EGKI---IEAAELCHQTSSLPEICGRVCPQDRLC 268 (639)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCH------HHHHHHHH----CCCH---HHHHHHHHHHCCCHHHHCCCCCCCCCH
T ss_conf 9999998975796986625389899977------89999998----6999---999999986488024323668998666
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHHC
Q ss_conf 551899788-899999999999861
Q gi|254781044|r 234 TQSCPKGLN-PAKAIAKIKMMLLDR 257 (259)
Q Consensus 234 ~~vCPkgI~-~~~~I~~LRr~~v~r 257 (259)
+.+|=.+.. -.=.|..|+|.+.+.
T Consensus 269 E~aC~~~~~~~pVaIg~LERfi~D~ 293 (639)
T PRK12809 269 EGACTLKDHSGAVSIGNLERYITDT 293 (639)
T ss_pred HHHCCCCCCCCCEEECHHHHHHHHH
T ss_conf 9865289999985788899999999
No 141
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=91.22 E-value=0.14 Score=30.05 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=22.4
Q ss_pred CCCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 767664734551899788899999999
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGLNPAKAIAKIK 251 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI~~~~~I~~LR 251 (259)
-.|+.|+.|..+||.++++.+++...+
T Consensus 365 ~~Ct~C~~C~~~CPn~l~I~eam~~a~ 391 (731)
T cd01916 365 AKCTDCGWCTRACPNSLRIKEAMEAAK 391 (731)
T ss_pred HHCCCCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 865323226654988686388999876
No 142
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=91.14 E-value=0.032 Score=34.10 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHH
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978889
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPA 244 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~ 244 (259)
.+...|..||.|+.+||+-+..-+ | .+ +... .-.|..|+.|..+||.-+...
T Consensus 169 ~~~E~c~gc~~cv~~C~~gAI~~~---~---------------~~-----l~id-----~~~Ci~Cg~Ci~~Cp~~~~~~ 220 (317)
T COG2221 169 VDEELCRGCGKCVKVCPTGAITWD---G---------------KK-----LKID-----GSKCIGCGKCIRACPKAAFRG 220 (317)
T ss_pred CCHHHHCHHHHHHHHCCCCCEEEC---C---------------CE-----EEEE-----HHHCCCCCHHHHHCCHHHCCH
T ss_conf 487884515768974987863422---4---------------15-----8984-----543657317766398655561
No 143
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=91.07 E-value=0.086 Score=31.44 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHCCCCCCHHHHH
Q ss_conf 76766473455189978889999
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGLNPAKAI 247 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI~~~~~I 247 (259)
.+|+.|+.|..|||.++.+-+.+
T Consensus 224 ~~C~~C~~C~~VCP~~~vir~~l 246 (287)
T PRK09477 224 EKCTRCMDCFHVCPEPQVLRPPL 246 (287)
T ss_pred CCCCCCCHHHHHCCCCCCCCHHH
T ss_conf 75809235767579954244443
No 144
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=90.96 E-value=0.16 Score=29.83 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 767664734551899788899999999
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGLNPAKAIAKIK 251 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI~~~~~I~~LR 251 (259)
-.|+.|+.|..+||.++++.+++....
T Consensus 402 ~~Ct~C~~C~~~CPn~l~I~eam~~a~ 428 (779)
T PRK00941 402 KKCTECGWCVRACPNELPIPEAMEAAA 428 (779)
T ss_pred HHCCCCCHHHHHCCCCCCHHHHHHHHH
T ss_conf 864323226653988686278999886
No 145
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=90.80 E-value=0.074 Score=31.86 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=6.6
Q ss_pred CCHHHHHHHH
Q ss_conf 1147889998
Q gi|254781044|r 191 LGPAILLQAY 200 (259)
Q Consensus 191 lGP~~l~~a~ 200 (259)
-||..++++.
T Consensus 184 cGP~~Mm~~v 193 (243)
T cd06192 184 AGSDIMMKAV 193 (243)
T ss_pred ECCHHHHHHH
T ss_conf 7999999999
No 146
>TIGR00276 TIGR00276 iron-sulfur cluster binding protein, putative; InterPro: IPR004453 This is a family of putative iron-sulphur cluster binding proteins. These proteins contain the 4Fe-4S ferredoxins iron-sulphur binding domain..
Probab=90.09 E-value=0.039 Score=33.56 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 169 ECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 169 ~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
.|=.|+.|..+||+-+.....++--.- ...-+..+.+-++ -.+++.+.-+.| -..|..|.+|||=+
T Consensus 173 ~CG~C~~C~~aCPT~AlVep~~vD~~~--Cis~~~~~~~~ea---~p~e~~~~~~~~-~~GCd~Cq~vCPwn 238 (297)
T TIGR00276 173 RCGKCTKCLDACPTQALVEPEVVDARR--CISYLTIEKEAEA---LPKEFASNLGGR-VYGCDICQEVCPWN 238 (297)
T ss_pred CCCCCHHHHHCCCCHHHCCCCCCCCCC--CCCEEEEECCCCC---CHHHHHHHHCCC-EEECCCCCCCCCCC
T ss_conf 787322466328520200664345322--4300244044543---538876531783-67347542206564
No 147
>PRK11749 putative oxidoreductase; Provisional
Probab=90.04 E-value=0.18 Score=29.40 Aligned_cols=11 Identities=18% Similarity=-0.049 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781044|r 244 AKAIAKIKMML 254 (259)
Q Consensus 244 ~~~I~~LRr~~ 254 (259)
..+|..=|+.+
T Consensus 437 v~Ai~~Gr~AA 447 (460)
T PRK11749 437 VLAVGDGKDAA 447 (460)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 148
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=89.90 E-value=0.072 Score=31.91 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCHHHCCC
Q ss_conf 544668888873131322820
Q gi|254781044|r 162 QKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 162 ~~~~~~~~CI~CG~C~saCP~ 182 (259)
.-.-+..+||.||.|+-+||.
T Consensus 76 ~v~V~~ekCiGC~~C~~aCPf 96 (165)
T COG1142 76 AVQVDEEKCIGCKLCVVACPF 96 (165)
T ss_pred CEEECCCCCCCCCHHHHCCCC
T ss_conf 658712216585246640986
No 149
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=89.78 E-value=0.089 Score=31.34 Aligned_cols=62 Identities=29% Similarity=0.515 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 76544668888873131322820010222101147889998851688843138899962286652767664734551899
Q gi|254781044|r 160 DRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK 239 (259)
Q Consensus 160 d~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk 239 (259)
+...+.+-.-|+.||.|.++||+.... -.||.+. +-+|.-||+|...||+
T Consensus 182 ~~~ll~qg~~C~G~~TC~A~CP~~ai~---c~Gc~g~---------------------------~~~~~~~Ga~~v~~~r 231 (247)
T COG1941 182 DCCLLEQGLPCMGCGTCAASCPSRAIP---CRGCRGN---------------------------IPRCIKCGACFVSCPR 231 (247)
T ss_pred HHEEECCCCCCCCCHHHHCCCCCCCCC---CCCCCCC---------------------------CCCCHHHHHHHHHHHH
T ss_conf 120213698434724543539735776---4377677---------------------------3200144589998757
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 7888999999999
Q gi|254781044|r 240 GLNPAKAIAKIKM 252 (259)
Q Consensus 240 gI~~~~~I~~LRr 252 (259)
.+-+ +.|.+|..
T Consensus 232 s~~~-ei~~~l~~ 243 (247)
T COG1941 232 SKGP-EIIEELKD 243 (247)
T ss_pred HHHH-HHHHHHHH
T ss_conf 7659-99998653
No 150
>PRK12831 putative oxidoreductase; Provisional
Probab=89.25 E-value=0.24 Score=28.70 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=17.1
Q ss_pred CEEEEEEECCCC-CCHHHHH-HHHHHHHCCCCEEEEECCCCC
Q ss_conf 368998642678-8116789-999997328763884045677
Q gi|254781044|r 44 CMDTYYVDLDNC-GPMVLDG-LLYIKNKIDPTLTLRRSCREG 83 (259)
Q Consensus 44 ~~~~y~v~~~~~-~~tvld~-L~~ik~~~D~sl~fr~sCr~g 83 (259)
-+-.|-++--+- ...|++- +..|++ .-+.|+.++.-|
T Consensus 177 G~l~yGIP~~RLpk~~vl~~ei~~l~~---~GV~~~~n~~vG 215 (464)
T PRK12831 177 GVLVYGIPEFRLPKETVVKKEIENIKK---LGVKIETNVIVG 215 (464)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHH---CCCEEEECCCCC
T ss_conf 804451688876678999999999985---293899157427
No 151
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=89.21 E-value=0.15 Score=29.98 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=10.5
Q ss_pred HHHCCCHHHCCCE
Q ss_conf 8731313228200
Q gi|254781044|r 171 VMCACCSTSCPSY 183 (259)
Q Consensus 171 I~CG~C~saCP~~ 183 (259)
-.|-.|...+|..
T Consensus 239 ~gC~~C~D~~a~~ 251 (332)
T COG1035 239 EGCRVCTDFVAEL 251 (332)
T ss_pred CCCEEHHHCCCCC
T ss_conf 7771055406553
No 152
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=88.77 E-value=0.046 Score=33.16 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=16.7
Q ss_pred HHHHHHHHHCCCHHHCCCEEEC
Q ss_conf 6688888731313228200102
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWN 186 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~ 186 (259)
-+-.+||-||.|+..||.+..+
T Consensus 236 v~~~kCi~CG~Cy~~Cpa~~~~ 257 (366)
T TIGR02066 236 VDEEKCIYCGNCYTMCPAMPID 257 (366)
T ss_pred ECCCEEEECCCCCCCCCCCCCC
T ss_conf 8473111027745531278777
No 153
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=88.72 E-value=0.091 Score=31.29 Aligned_cols=20 Identities=30% Similarity=0.820 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCHHHCCCEEE
Q ss_conf 68888873131322820010
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~ 185 (259)
++.+||-||.|+.+||+...
T Consensus 93 n~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 93 NLGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred CCCCCCCCCCHHHHCCHHHH
T ss_conf 33512611751423966562
No 154
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=88.56 E-value=0.016 Score=35.97 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHCCCCCCH
Q ss_conf 676647345518997888
Q gi|254781044|r 226 RCHTIMNCTQSCPKGLNP 243 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI~~ 243 (259)
.|..|+.|..+||-|++-
T Consensus 101 ~CIGC~yCi~ACPyga~~ 118 (203)
T COG0437 101 LCIGCGYCIAACPYGAPQ 118 (203)
T ss_pred CCCCCHHHHHHCCCCCCE
T ss_conf 224734778649988856
No 155
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=88.55 E-value=0.095 Score=31.19 Aligned_cols=20 Identities=25% Similarity=0.745 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCHHHCCCEE
Q ss_conf 66888887313132282001
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~ 184 (259)
-++..||-||.|+.+||+-.
T Consensus 99 ID~grCIFCG~CvEaCPtdA 118 (173)
T CHL00014 99 IDFGICIFCGNCVEYCPTNC 118 (173)
T ss_pred ECCCCCCCCCCCCCCCCCCC
T ss_conf 56162130367110178680
No 156
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=88.47 E-value=0.049 Score=32.95 Aligned_cols=17 Identities=35% Similarity=0.882 Sum_probs=14.4
Q ss_pred HHHHHHCCCHHHCCCEE
Q ss_conf 88887313132282001
Q gi|254781044|r 168 YECVMCACCSTSCPSYW 184 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~ 184 (259)
.+||.||.|+.+||+-.
T Consensus 73 ~~Ci~Cg~C~~~CP~~A 89 (111)
T PRK08348 73 GRCVFCGQCVDVCPTGA 89 (111)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 90853887577377283
No 157
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only; InterPro: IPR013352 This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. These proteins represent a subdivision within a larger family which includes proteins such as nuclear prelamin A recognition factor in animals. These proteins show some heterogeneity in terms of periplasmic, cytosolic or hydrogenosomic location, NAD or NADP dependence, and overall protein length.; GO: 0005506 iron ion binding, 0008901 ferredoxin hydrogenase activity, 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=88.15 E-value=0.14 Score=30.21 Aligned_cols=73 Identities=15% Similarity=0.362 Sum_probs=35.2
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-HH
Q ss_conf 68888873131322820010222101147889998851688843138899962286652767664734551899788-89
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN-PA 244 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~-~~ 244 (259)
+...|+.|+.|..+|+....... ++.. ........ .. .. ........|..|+.|..+||.+-- ..
T Consensus 5 ~~~kc~~c~~c~~~c~~~~~~~~--~~~~--~~~~~~~~----~~---~~---~~~~~~~~c~~cgqc~~~c~~~~~~~~ 70 (380)
T TIGR02512 5 DMSKCILCGRCVRACTNVQIVGA--LGFL--NRGGKTEV----AP---AF---GRLLDESECISCGQCSLVCPVGAITEK 70 (380)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCH--HHCC--CCCCCCCC----CC---CC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43100011101211000010000--0001--23332101----21---10---110111111234421012442100000
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781044|r 245 KAIAKIKM 252 (259)
Q Consensus 245 ~~I~~LRr 252 (259)
+.+.....
T Consensus 71 ~~~~~~~~ 78 (380)
T TIGR02512 71 DDVDRVLK 78 (380)
T ss_pred CHHHHHHH
T ss_conf 01234444
No 158
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=88.14 E-value=0.52 Score=26.58 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 8888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
..|=.|..|..+||+-.......+.+.- --.|... .......+....+. ++++ .|+-|..+||.+
T Consensus 185 ~~Cg~C~~CidaCPt~Al~~~~~~~~~~-cis~lt~--~~~~~p~e~r~~~~--n~iy---gCd~C~~vCPwn 249 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDARR-CISYLTI--EKGGAPEEFRPLIG--NRIY---GCDICQKVCPWN 249 (337)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHH--HCCCCCHHHHHHCC--CCEE---CCCHHHHHCCCC
T ss_conf 7572168998639853427887546557-7566433--04688077787516--9654---686688728821
No 159
>pfam00037 Fer4 4Fe-4S binding domain. Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.
Probab=87.98 E-value=0.15 Score=29.95 Aligned_cols=18 Identities=28% Similarity=0.794 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCHHHCCCE
Q ss_conf 688888731313228200
Q gi|254781044|r 166 GLYECVMCACCSTSCPSY 183 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~ 183 (259)
+...||.||.|+.+||..
T Consensus 4 ~~~~Ci~Cg~C~~~CP~~ 21 (26)
T pfam00037 4 DEEKCIGCGACVEVCPVG 21 (26)
T ss_pred CHHHHCCCHHHHHHCCCC
T ss_conf 757623421345308854
No 160
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=87.94 E-value=0.16 Score=29.70 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 11478899988516888431388999622866527676647
Q gi|254781044|r 191 LGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIM 231 (259)
Q Consensus 191 lGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~ 231 (259)
-||..++++..-....+...-.-.|+... .-|+..|.+|-
T Consensus 185 cGP~~Mmk~v~~~~~~~~~~~~vSlE~~M-~CG~G~C~~C~ 224 (248)
T PRK00054 185 CGPEIMMKKVVEILKEKKVRAYVSLERRM-KCGIGACGACV 224 (248)
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCCCCCCCCE
T ss_conf 69989999999998755995999777737-78120758468
No 161
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=87.93 E-value=0.15 Score=30.00 Aligned_cols=24 Identities=21% Similarity=0.675 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf 776544668888873131322820
Q gi|254781044|r 159 EDRQKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 159 ed~~~~~~~~~CI~CG~C~saCP~ 182 (259)
-+.+++-+.+.||.|=+|.++|-.
T Consensus 22 ~e~A~LiDVS~CIGCKAC~~aC~e 45 (293)
T TIGR01582 22 VEVAKLIDVSSCIGCKACQAACQE 45 (293)
T ss_pred CCEEEEEECCCCCCCHHHHHCCCC
T ss_conf 544678630666453122210356
No 162
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=87.83 E-value=0.59 Score=26.28 Aligned_cols=68 Identities=28% Similarity=0.493 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCCEEEEC----C-----CCCCCCCCCHHCCCCC--EEEEECCC---
Q ss_conf 7881167899999973287638-840456773544303143----6-----1266321100004785--18986489---
Q gi|254781044|r 54 NCGPMVLDGLLYIKNKIDPTLT-LRRSCREGICGSCGMNID----G-----TNTLACVKDMKDIKGA--IAVYPLPH--- 118 (259)
Q Consensus 54 ~~~~tvld~L~~ik~~~D~sl~-fr~sCr~giCGsCa~~iN----G-----~~~LAC~t~~~~~~~~--i~iePl~~--- 118 (259)
++..|+||-|..= -.|+ -.-+|-+|-||.|++.|- | +.+-||...+..+++. +|+|-|.+
T Consensus 24 ~P~~TlLd~LR~d-----~~ltGtKEGCAEGDCGACTVlVgrl~~g~~l~yeSVNACirfl~sL~G~hvvTvE~L~~~~g 98 (493)
T COG4630 24 PPTTTLLDYLRLD-----RRLTGTKEGCAEGDCGACTVLVGRLVDGGSLRYESVNACIRFLGSLDGTHVVTVEHLRGQDG 98 (493)
T ss_pred CCCHHHHHHHHHH-----CCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHCCCCEEEEEHHHCCCCC
T ss_conf 9602799999874-----25566645666787675289997554898244310657998875057735997565237998
Q ss_pred --CEEEEEEE
Q ss_conf --80441124
Q gi|254781044|r 119 --MSVIKDLV 126 (259)
Q Consensus 119 --~pVikDLv 126 (259)
.||.+-||
T Consensus 99 ~LHpVQqamv 108 (493)
T COG4630 99 TLHPVQQAMV 108 (493)
T ss_pred CCCHHHHHHH
T ss_conf 8687899987
No 163
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=87.72 E-value=0.21 Score=29.00 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC---------CHHHHCCC----CCCHHHHHHHHHHHHHHC
Q ss_conf 11478899988516888431388999622866527676647---------34551899----788899999999999861
Q gi|254781044|r 191 LGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIM---------NCTQSCPK----GLNPAKAIAKIKMMLLDR 257 (259)
Q Consensus 191 lGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~---------~C~~vCPk----gI~~~~~I~~LRr~~v~r 257 (259)
-||..++++..-....+...-.-.|+... .-|+..|..|- .|.+ =|. .|.=-++|+++++.-.+.
T Consensus 187 CGP~~Mmk~v~~~~~~~~v~~~vSLE~~M-aCGiG~C~~C~v~~~g~~k~vC~D-GPVFda~eV~wd~l~~r~~~~~~~e 264 (281)
T PRK06222 187 IGPVIMMKAVAELTKPYGIKTIVSLNPIM-VDGTGMCGACRVTVGGETKFACVD-GPEFDGHLVDFDELMRRLAMYKEEE 264 (281)
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCCEECCCCEEEECCCEEEEECC-CCCCCCEEECHHHHHHHHHHHHHHH
T ss_conf 89999999999999876997999654525-574708886872879977999797-9852775962899999988718999
No 164
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family; InterPro: IPR011886 Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.; GO: 0005506 iron ion binding, 0006118 electron transport.
Probab=87.60 E-value=0.11 Score=30.80 Aligned_cols=15 Identities=33% Similarity=1.054 Sum_probs=12.9
Q ss_pred CCCCCCCHHHHCCCC
Q ss_conf 676647345518997
Q gi|254781044|r 226 RCHTIMNCTQSCPKG 240 (259)
Q Consensus 226 ~C~~C~~C~~vCPkg 240 (259)
.|++|+.|.+|||.-
T Consensus 205 ~C~~Cm~C~~vCpEp 219 (263)
T TIGR02163 205 KCTNCMDCFNVCPEP 219 (263)
T ss_pred CCCCCCCCCCCCCCH
T ss_conf 268775776015852
No 165
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=87.47 E-value=0.13 Score=30.28 Aligned_cols=15 Identities=33% Similarity=1.065 Sum_probs=11.3
Q ss_pred HHHHHCCCHHHCCCE
Q ss_conf 888731313228200
Q gi|254781044|r 169 ECVMCACCSTSCPSY 183 (259)
Q Consensus 169 ~CI~CG~C~saCP~~ 183 (259)
+|..||.|+.+||+-
T Consensus 756 DCtGCglCvd~CPa~ 770 (1194)
T TIGR02176 756 DCTGCGLCVDICPAK 770 (1194)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 035763420358588
No 166
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=87.39 E-value=0.68 Score=25.87 Aligned_cols=28 Identities=21% Similarity=0.629 Sum_probs=20.8
Q ss_pred CCCCCCCCCCHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 5276766473455189978889999999999
Q gi|254781044|r 223 RLYRCHTIMNCTQSCPKGLNPAKAIAKIKMM 253 (259)
Q Consensus 223 gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~ 253 (259)
++- |+.|+.|.. ||.||++.... .|...
T Consensus 292 ~v~-Ct~C~yC~P-CP~gInIP~~f-~lyN~ 319 (391)
T COG1453 292 KVP-CTGCRYCLP-CPSGINIPEIF-RLYNL 319 (391)
T ss_pred CCC-CCCCCCCCC-CCCCCCHHHHH-HHHHH
T ss_conf 689-862541476-98887768899-99888
No 167
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=87.22 E-value=0.32 Score=27.91 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=22.0
Q ss_pred CCCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 767664734551899788899999999
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGLNPAKAIAKIK 251 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI~~~~~I~~LR 251 (259)
..|+.||+|..+||.++++.++.....
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~A~ 426 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEYAA 426 (772)
T ss_pred HHCCCCCCHHCCCCCCCCHHHHHHHHH
T ss_conf 866544521103975466477888765
No 168
>PRK10330 electron transport protein HydN; Provisional
Probab=87.21 E-value=0.25 Score=28.62 Aligned_cols=46 Identities=28% Similarity=0.535 Sum_probs=28.4
Q ss_pred HHHHH--CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 88873--131322820010222101147889998851688843138899962286652767664734551899788
Q gi|254781044|r 169 ECVMC--ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 169 ~CI~C--G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~ 242 (259)
.|..| ..|+.+||+-.... |.+ . .+.+. ..|..|+.|..+||-|+.
T Consensus 57 ~C~HC~~p~C~~vCP~gAi~k--------------------~~G----~-V~vd~---~~CiGC~~C~~ACPyga~ 104 (181)
T PRK10330 57 VCRQCEDAPCANVCPNGAISR--------------------DKG----F-VHVMQ---ERCIGCKTCVVACPYGAM 104 (181)
T ss_pred CCCCCCCCCHHHHCCCCCEEE--------------------CCC----E-EEECC---CCCCCCCCHHHCCCCCCC
T ss_conf 487989973377687776997--------------------499----5-99854---729272930133999983
No 169
>TIGR02912 sulfite_red_C sulfite reductase, subunit C; InterPro: IPR014261 This entry represents subunit C, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=86.72 E-value=0.083 Score=31.55 Aligned_cols=25 Identities=24% Similarity=0.720 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHCCCHHHCCCEEE
Q ss_conf 6544668888873131322820010
Q gi|254781044|r 161 RQKIDGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 161 ~~~~~~~~~CI~CG~C~saCP~~~~ 185 (259)
.+-..+-.+||.||=|+..||+.++
T Consensus 200 ~Kvvr~~~~CIGCGECv~~CPT~AW 224 (323)
T TIGR02912 200 YKVVRDESKCIGCGECVLKCPTGAW 224 (323)
T ss_pred CEEEECCCCEECCCCHHHCCCCCCC
T ss_conf 2256527750035301320886444
No 170
>KOG3256 consensus
Probab=86.71 E-value=0.1 Score=30.95 Aligned_cols=20 Identities=25% Similarity=0.806 Sum_probs=16.6
Q ss_pred HHHHHHHHHCCCHHHCCCEE
Q ss_conf 66888887313132282001
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~ 184 (259)
-+...||-||.|+.+||+-.
T Consensus 147 IDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256 147 IDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred CCCEEEEEECCHHHHCCCCC
T ss_conf 45214656045364387231
No 171
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=86.33 E-value=0.15 Score=29.97 Aligned_cols=55 Identities=24% Similarity=0.489 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 6888887313132282001022210114788999885168884313889996228665276766473455
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQ 235 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~ 235 (259)
++.+||.||.|+.+||+-+.. +++-.-+..+ .+ +.+.. .....+-.|..||..-.
T Consensus 71 d~~rCifCG~C~evCPt~AI~----lt~efElA~~-----~k-----~dl~~-~~~~~~~~C~~CG~~f~ 125 (178)
T PRK12387 71 NLGRCIFCGRCEEVCPTAAIK----LSQEYELAVW-----KK-----EDLLQ-QSRFALCNCRVCGRPFA 125 (178)
T ss_pred CCCCCCCCCHHHHHCCCCCCC----CCHHHHHHHC-----CH-----HHCEE-EEEEEEEECCCCCCCCC
T ss_conf 304066867156668824223----3618775412-----55-----34456-76870221563478055
No 172
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=86.31 E-value=0.17 Score=29.59 Aligned_cols=17 Identities=29% Similarity=0.895 Sum_probs=10.5
Q ss_pred HHHHHHHHCCCHHHCCC
Q ss_conf 68888873131322820
Q gi|254781044|r 166 GLYECVMCACCSTSCPS 182 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~ 182 (259)
+...|+.||.|+.+||.
T Consensus 79 D~d~C~GCG~C~~~CP~ 95 (105)
T PRK09623 79 DYDYCKGCGICANECPT 95 (105)
T ss_pred CHHHCCCHHHHHHHCCH
T ss_conf 86689286388776799
No 173
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=86.21 E-value=0.18 Score=29.46 Aligned_cols=28 Identities=32% Similarity=0.825 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCH
Q ss_conf 6888887313132282001022210114
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGP 193 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP 193 (259)
...+||.|+.|.++||+-...--.|+|+
T Consensus 43 RtedCIGC~~CE~aCPtdaLsir~y~g~ 70 (80)
T TIGR03048 43 RTEDCVGCKRCESACPTDFLSVRVYLGA 70 (80)
T ss_pred CCCCCCCCCHHHHCCCCCCCEEEEECCC
T ss_conf 6100556213443089873135884175
No 174
>TIGR02486 RDH reductive dehalogenase; InterPro: IPR012832 This entry represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as Dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterised enzyme is the tetrachloroethene reductive dehalogenase (1.97.1.8 from EC) which also acts on trichloroethene converting it to dichloroethene..
Probab=85.97 E-value=0.17 Score=29.59 Aligned_cols=114 Identities=20% Similarity=0.386 Sum_probs=58.0
Q ss_pred CCEEEEECCCC--EEEEE--EEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEE
Q ss_conf 85189864898--04411--245104799988754210346663110111220777654466888887313132282001
Q gi|254781044|r 109 GAIAVYPLPHM--SVIKD--LVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 109 ~~i~iePl~~~--pVikD--LvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~~ 184 (259)
+..+|.|-=|. .+.+= +++|+- |.|+.|-+.+ +.++ |=-||.|...||+-.
T Consensus 184 g~~~i~P~~G~~~r~~~~f~~~TDlP------------L~PtKPIDaG--------~~~F-----C~tC~kCAd~CP~~a 238 (338)
T TIGR02486 184 GSVIISPEYGPRVRVAKVFIILTDLP------------LAPTKPIDAG--------VAKF-----CETCGKCADECPSGA 238 (338)
T ss_pred CCCEEECCCCCCCEEEEEEEEEECCC------------CCCCCCCCCC--------HHHH-----HHHHHHHHHCCCCCC
T ss_conf 88225112464300000345764666------------5100571221--------5887-----665566642286213
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCHH-HHH------H-HHCCCC-CCCCCC-----CCCCHHHHCCCC---CCHHHHH
Q ss_conf 0222101147889998851688843138-899------9-622866-527676-----647345518997---8889999
Q gi|254781044|r 185 WNSDRYLGPAILLQAYRWLIDSRDEFQG-ERL------D-NLEDPF-RLYRCH-----TIMNCTQSCPKG---LNPAKAI 247 (259)
Q Consensus 185 ~~~~~flGP~~l~~a~r~~~D~rD~~~~-erl------~-~l~~~~-gi~~C~-----~C~~C~~vCPkg---I~~~~~I 247 (259)
-..+ --|. +|-....+...+ ... + .-.+.. .++.|. .|+.|..+||-. ..+...|
T Consensus 239 I~~~--~~~~------~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cg~C~~~CpFNsf~~~~~s~~ 310 (338)
T TIGR02486 239 ISKE--GEPR------TWDVEGPSVSGKKPNGENNPGKKWQFDGWRCDLFKCANEGGGGCGVCQAVCPFNSFTKKPNSWV 310 (338)
T ss_pred CCCC--CCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCCEECCCCCEE
T ss_conf 2578--8884------1222474357775576227730688877432413214667888721134245221023686123
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254781044|r 248 AKIKMMLL 255 (259)
Q Consensus 248 ~~LRr~~v 255 (259)
-.+=|-++
T Consensus 311 H~~~r~~v 318 (338)
T TIGR02486 311 HDVVRSTV 318 (338)
T ss_pred EHHHHHHH
T ss_conf 13467530
No 175
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I; InterPro: IPR010226 This entry represents the I subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain 'I' subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=85.93 E-value=0.13 Score=30.41 Aligned_cols=19 Identities=26% Similarity=0.919 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCHHHCCCEE
Q ss_conf 6888887313132282001
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~ 184 (259)
++.+||=||.|..+||+-+
T Consensus 87 n~grCifCGlC~E~CP~~A 105 (129)
T TIGR01971 87 NFGRCIFCGLCEEACPTDA 105 (129)
T ss_pred CCEEEEEEECCCCCCCCHH
T ss_conf 3212223307511271015
No 176
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.72 E-value=0.42 Score=27.15 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCCCCCCC---HHHHCCCCCCHHHHHHHHHH
Q ss_conf 76766473---45518997888999999999
Q gi|254781044|r 225 YRCHTIMN---CTQSCPKGLNPAKAIAKIKM 252 (259)
Q Consensus 225 ~~C~~C~~---C~~vCPkgI~~~~~I~~LRr 252 (259)
-+|..|+. |...||.++++.+.|..+.+
T Consensus 208 ~RCl~Cg~~~~C~~~CPv~~~IP~~i~~i~~ 238 (639)
T PRK12809 208 DRCVYCAEKANCNWHCPLHNAIPDYIRLVQE 238 (639)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 8975796986625389899977899999986
No 177
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=85.27 E-value=0.12 Score=30.60 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 668888873131322820010222101147889998851688843138899962286652767664734551899
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK 239 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk 239 (259)
.+..+||.|+.|.--||-......+..... . ++ --.|-.||-|.++||.
T Consensus 32 ~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~-------------------~---id----YdyCKGCGICa~vCP~ 80 (91)
T COG1144 32 VDEDKCINCKLCWLYCPEPAILEEEGGYKV-------------------R---ID----YDYCKGCGICANVCPV 80 (91)
T ss_pred ECCHHCCCCCEEEEECCCHHEEECCCCCCC-------------------E---EE----CCCCCCCEECHHHCCH
T ss_conf 741000268635898794005601587312-------------------0---47----5604676640303886
No 178
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=84.76 E-value=0.49 Score=26.78 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=21.9
Q ss_pred CCCCCCCCCCHHHHCCCC-CCH----HHHHHHHHHHHHH
Q ss_conf 527676647345518997-888----9999999999986
Q gi|254781044|r 223 RLYRCHTIMNCTQSCPKG-LNP----AKAIAKIKMMLLD 256 (259)
Q Consensus 223 gi~~C~~C~~C~~vCPkg-I~~----~~~I~~LRr~~v~ 256 (259)
+++.|..||.|+.+||.- .++ ..++.+..|.+++
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D 178 (234)
T COG0479 140 ELSECILCGCCTAACPSIWWNPDFLGPAALRQAYRFLAD 178 (234)
T ss_pred HHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 554362144404228753236577688999999998549
No 179
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=84.55 E-value=0.37 Score=27.55 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=4.5
Q ss_pred EEEECCCCCC
Q ss_conf 0314361266
Q gi|254781044|r 89 GMNIDGTNTL 98 (259)
Q Consensus 89 a~~iNG~~~L 98 (259)
|+.|=|+...
T Consensus 102 Al~~~G~~~t 111 (305)
T TIGR02494 102 ALEIVGKEMT 111 (305)
T ss_pred HHHEECCCCC
T ss_conf 6420245148
No 180
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=84.13 E-value=0.51 Score=26.64 Aligned_cols=19 Identities=37% Similarity=1.001 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCHHHCCC
Q ss_conf 4668888873131322820
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~ 182 (259)
-+.+|.|..|+.|+..||.
T Consensus 42 s~~lW~C~tC~~C~~~CP~ 60 (144)
T TIGR03290 42 DDDLWMCTTCYTCQERCPR 60 (144)
T ss_pred CCCCCCCCCCCCHHHHCCC
T ss_conf 8863038473754013489
No 181
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=83.95 E-value=0.54 Score=26.51 Aligned_cols=20 Identities=25% Similarity=0.821 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCHHHCCCEE
Q ss_conf 66888887313132282001
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~ 184 (259)
.++..||-||.|+.+||+-.
T Consensus 94 Id~~rCifCGlCve~CP~~A 113 (172)
T PRK05888 94 INFGRCIFCGFCEEACPTDA 113 (172)
T ss_pred ECCCCCCCCCCCCCCCCCCC
T ss_conf 53460578888221088872
No 182
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=83.90 E-value=0.27 Score=28.35 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=7.6
Q ss_pred CCCCCCHHHHCCCC
Q ss_conf 76647345518997
Q gi|254781044|r 227 CHTIMNCTQSCPKG 240 (259)
Q Consensus 227 C~~C~~C~~vCPkg 240 (259)
|..|+.|+++||.+
T Consensus 508 C~~C~~Cv~vCP~~ 521 (560)
T PRK12771 508 CFECDNCYGFCPQD 521 (560)
T ss_pred CCCCCCHHHHCCCC
T ss_conf 21646575528432
No 183
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=83.87 E-value=0.18 Score=29.50 Aligned_cols=19 Identities=26% Similarity=0.906 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCHHHCCC
Q ss_conf 4668888873131322820
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~ 182 (259)
+....+||.|++|.-+||.
T Consensus 71 ~~~~~~CIGC~AC~rVCPk 89 (96)
T TIGR02936 71 LANPGNCIGCGACARVCPK 89 (96)
T ss_pred ECCCCCCCCCCCCCCCCCC
T ss_conf 4287785042347705688
No 184
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=83.79 E-value=0.2 Score=29.12 Aligned_cols=19 Identities=32% Similarity=0.814 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCHHHCCCEE
Q ss_conf 6888887313132282001
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~ 184 (259)
++.+||-||.|..+||+-.
T Consensus 71 d~grCIfCG~C~EvCPt~A 89 (181)
T PRK08222 71 YLGRCIYCGRCEEVCPTRA 89 (181)
T ss_pred CCCCCCCCCHHHHHCCCCC
T ss_conf 2661678772441488142
No 185
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=83.64 E-value=0.28 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCHHHCCCEE
Q ss_conf 466888887313132282001
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~ 184 (259)
..+...|+.||.|..+||+-+
T Consensus 77 ~iD~d~C~GCG~Ca~~CP~~A 97 (105)
T PRK09624 77 VFDYDYCKGCGICANECPTKA 97 (105)
T ss_pred EECHHHCCCCCHHHHHCCHHH
T ss_conf 857657857055452579836
No 186
>PRK13795 hypothetical protein; Provisional
Probab=83.57 E-value=0.27 Score=28.41 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=15.3
Q ss_pred CCCCCCCCCHHHHCCCCC
Q ss_conf 276766473455189978
Q gi|254781044|r 224 LYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 224 i~~C~~C~~C~~vCPkgI 241 (259)
...|+.|+.|+..||.|-
T Consensus 574 ~~~C~gCg~C~~~CP~gA 591 (630)
T PRK13795 574 AAICTGCGVCVGWCPTGA 591 (630)
T ss_pred HHHCCCCCHHHHHCCCCC
T ss_conf 874789734663378884
No 187
>pfam00037 Fer4 4Fe-4S binding domain. Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.
Probab=82.84 E-value=0.44 Score=27.05 Aligned_cols=16 Identities=31% Similarity=0.854 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHCCCCC
Q ss_conf 6766473455189978
Q gi|254781044|r 226 RCHTIMNCTQSCPKGL 241 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI 241 (259)
.|+.||.|.++||.+.
T Consensus 7 ~Ci~Cg~C~~~CP~~a 22 (26)
T pfam00037 7 KCIGCGACVEVCPVGA 22 (26)
T ss_pred HHCCCHHHHHHCCCCC
T ss_conf 6234213453088542
No 188
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=82.53 E-value=0.71 Score=25.76 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=25.6
Q ss_pred CCCCCCC--CHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 7676647--3455189978889999999999
Q gi|254781044|r 225 YRCHTIM--NCTQSCPKGLNPAKAIAKIKMM 253 (259)
Q Consensus 225 ~~C~~C~--~C~~vCPkgI~~~~~I~~LRr~ 253 (259)
-+|..|+ -|+..||.+|++.+.|..+++.
T Consensus 337 ~RCl~C~~p~C~~gCPv~idIP~fI~~i~~g 367 (760)
T PRK12778 337 QRCLDCANPGCMNGCPVGIDIPRFIKNIERG 367 (760)
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 8975799985454899999779999999869
No 189
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=82.35 E-value=0.19 Score=29.35 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHH
Q ss_conf 446688888731313228200102221011478
Q gi|254781044|r 163 KIDGLYECVMCACCSTSCPSYWWNSDRYLGPAI 195 (259)
Q Consensus 163 ~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~ 195 (259)
.-...+.|+.||.|+.+||+-..-.-.++|-+.
T Consensus 187 ~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag 219 (978)
T COG3383 187 VPINESSCVSCGACVTVCPVNALMEKSMLGEAG 219 (978)
T ss_pred CCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCC
T ss_conf 755301255457602015605643122220234
No 190
>KOG2282 consensus
Probab=82.32 E-value=3.8 Score=21.20 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=33.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE---EEECC--CCCCCCCCC
Q ss_conf 73689986426788116789999997328763884045677354430---31436--126632110
Q gi|254781044|r 43 PCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCG---MNIDG--TNTLACVKD 103 (259)
Q Consensus 43 ~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa---~~iNG--~~~LAC~t~ 103 (259)
-+.|.|.|.++ +|+|||.+-..+--++ | -|-|-=|-+|-|.|- +.|.- +|+-||--.
T Consensus 35 vfvd~~~v~v~-pg~tvlqac~~~gv~i-p--rfcyh~rlsvagncrmclvevekspkpva~camp 96 (708)
T KOG2282 35 VFVDDQSVMVE-PGTTVLQACAKVGVDI-P--RFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMP 96 (708)
T ss_pred EEECCEEEEEC-CCCHHHHHHHHHCCCC-C--HHHHHHHHHHCCCEEEEEEEECCCCCCCHHHCCC
T ss_conf 99778057637-9748999999867886-3--1232323212366038998802488710532254
No 191
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=82.05 E-value=0.5 Score=26.73 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=7.2
Q ss_pred CCHHHHHHHHH
Q ss_conf 11478899988
Q gi|254781044|r 191 LGPAILLQAYR 201 (259)
Q Consensus 191 lGP~~l~~a~r 201 (259)
-||-.|+++..
T Consensus 186 cGP~~Mmk~v~ 196 (246)
T cd06218 186 CGPEPMLKAVA 196 (246)
T ss_pred ECCHHHHHHHH
T ss_conf 79999999999
No 192
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=81.79 E-value=0.33 Score=27.82 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCHHHCCCEE
Q ss_conf 66888887313132282001
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~ 184 (259)
-+..+||.||.|...||.+.
T Consensus 50 v~pe~CIgCG~Ce~~CPd~A 69 (103)
T PRK09626 50 VYPESCIGCRECELHCPDFA 69 (103)
T ss_pred CCHHHCCCCCHHHHHCCHHH
T ss_conf 68335838275755488232
No 193
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=81.66 E-value=0.87 Score=25.20 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=25.6
Q ss_pred CCCCCCCC--HHHHCCCCCCHHHHHHHHHHH
Q ss_conf 76766473--455189978889999999999
Q gi|254781044|r 225 YRCHTIMN--CTQSCPKGLNPAKAIAKIKMM 253 (259)
Q Consensus 225 ~~C~~C~~--C~~vCPkgI~~~~~I~~LRr~ 253 (259)
-+|.+|.+ |+.-||.+|++...|..+.+.
T Consensus 331 ~RCLqCk~p~Cv~GCPV~idIP~FI~~I~~g 361 (993)
T PRK12775 331 ERCIQCIKPTCIAGCPVGIDIPVFIRNILVR 361 (993)
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 8850898997677998988759999999738
No 194
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011898 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.; GO: 0016625 oxidoreductase activity acting on the aldehyde or oxo group of donors iron-sulfur protein as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=81.61 E-value=0.34 Score=27.78 Aligned_cols=51 Identities=22% Similarity=0.439 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCHHHCCCE-EECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 688888731313228200-102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 166 GLYECVMCACCSTSCPSY-WWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~-~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
+-.+||.|+.|.--||-. ....++. ..+.+..++ - -.|=.||-|.++||..
T Consensus 23 ~~~KC~~C~~C~~YCPe~~~I~~~e~--------------------~~~~~~~iD-Y---dYCKGCGiCA~vCP~k 74 (84)
T TIGR02179 23 DKEKCIKCKLCWLYCPEGAAIQEDEG--------------------GDEKKVEID-Y---DYCKGCGICANVCPVK 74 (84)
T ss_pred CCCCCCCCCCEEEECCCCCEEECCCC--------------------CEEEEEEEC-C---CCCCCCEEECCCCCCC
T ss_conf 03453566403887699747761589--------------------326776764-8---7378751502748658
No 195
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=81.59 E-value=0.8 Score=25.44 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=23.6
Q ss_pred CCCCCCCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 27676647345518997888999999999
Q gi|254781044|r 224 LYRCHTIMNCTQSCPKGLNPAKAIAKIKM 252 (259)
Q Consensus 224 i~~C~~C~~C~~vCPkgI~~~~~I~~LRr 252 (259)
--.|..|+.|++|||.+|.|...+..+..
T Consensus 373 ~Ra~I~~g~~e~v~P~di~P~qL~ka~~~ 401 (448)
T PRK05352 373 ERAMVPIGNYERVMPLDILPTLLLRALIA 401 (448)
T ss_pred CCCEEECCHHHHHCCCCCCHHHHHHHHHC
T ss_conf 44378867476427885689999999870
No 196
>PRK02651 photosystem I subunit VII; Provisional
Probab=80.75 E-value=0.38 Score=27.41 Aligned_cols=29 Identities=34% Similarity=0.779 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCH
Q ss_conf 66888887313132282001022210114
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGP 193 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP 193 (259)
....+||.|..|.++||+-...-.-|+|+
T Consensus 43 pR~edCIGCk~Ce~aCPtd~lsir~y~~~ 71 (81)
T PRK02651 43 PRTEDCVGCKRCETACPTDFLSIRVYLGD 71 (81)
T ss_pred CCHHHCCCHHHHHHCCCCCCEEEEEECCC
T ss_conf 84543335144663089985047885175
No 197
>TIGR02060 aprB adenylylsulfate reductase, beta subunit; InterPro: IPR011802 During dissimilatory sulphate reduction and sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the beta subunit of APS reductase, which shares a common evolutionary origin with other iron-sulphur cluster-binding proteins..
Probab=80.39 E-value=0.49 Score=26.77 Aligned_cols=50 Identities=28% Similarity=0.656 Sum_probs=29.7
Q ss_pred HHHHHHHC-----CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88888731-----3132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMCA-----CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~CG-----~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..+|=.|+ +|...||+=...=| ....+||. .+++ .|=.|+.|+.+||.|-
T Consensus 7 ~~kCDGC~~~e~t~C~~ICP~DlM~lD-----~~~~kAYN-----------------~EP~---~CWECYSCVK~CP~~A 61 (138)
T TIGR02060 7 PTKCDGCKALEKTACVYICPNDLMILD-----TEKMKAYN-----------------REPD---MCWECYSCVKICPQGA 61 (138)
T ss_pred CCCCCCCCCCCCCCEEECCCHHHHHHC-----CHHHHHHC-----------------CCCC---CCCCCCCCCCCCCCCC
T ss_conf 845667787663111110830222305-----02455416-----------------8766---6312100012188874
No 198
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=80.23 E-value=0.45 Score=27.00 Aligned_cols=21 Identities=38% Similarity=1.024 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCHHHCCC
Q ss_conf 544668888873131322820
Q gi|254781044|r 162 QKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 162 ~~~~~~~~CI~CG~C~saCP~ 182 (259)
+.-..+++|+.||.|..+||-
T Consensus 183 a~~~gl~~Ct~C~~C~~vCPK 203 (491)
T PRK06259 183 AIDEGLYNCTTCGKCVEVCPK 203 (491)
T ss_pred HHHCCCCCCCCCCCHHHHCCC
T ss_conf 987797437635804443887
No 199
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=79.92 E-value=0.43 Score=27.11 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=25.7
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 22210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 186 NSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 186 ~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+...|+-|..-....+. +.-.-+-++.+.+. + .|+.||.|..+||.+-
T Consensus 143 G~~~yl~p~~~~~~~~~-----~~cgcdl~~~vin~-~--LC~GCg~Ca~~Cp~~A 190 (228)
T TIGR03294 143 GDMEYLQPLAALAEEGT-----EACGCDLMTKVVNQ-G--LCMGCGTCAAACPTRA 190 (228)
T ss_pred CCCHHCCCHHHHHHCCC-----CCCCCHHHHHCCCC-C--CCCCCHHHHHHCCCCC
T ss_conf 99221254799972386-----34575037752463-2--1678157785488576
No 200
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=79.42 E-value=0.38 Score=27.47 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=11.5
Q ss_pred CCCCCCCHHHHC
Q ss_conf 676647345518
Q gi|254781044|r 226 RCHTIMNCTQSC 237 (259)
Q Consensus 226 ~C~~C~~C~~vC 237 (259)
.|+.||.|..+|
T Consensus 343 ~Ci~Cg~C~~~C 354 (413)
T PRK08318 343 KCIGCGRCYIAC 354 (413)
T ss_pred HCCCCCCEEEEE
T ss_conf 389988844461
No 201
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=78.70 E-value=0.38 Score=27.45 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCHHHCCCEEE
Q ss_conf 4668888873131322820010
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~ 185 (259)
.-.|.+|..||.|-.+||--+-
T Consensus 176 ~I~LlkC~GCG~Cke~CPynAI 197 (237)
T TIGR02700 176 EIRLLKCVGCGKCKEVCPYNAI 197 (237)
T ss_pred EEEEEECCCCCCCCCCCCHHHH
T ss_conf 1100102478875335854450
No 202
>TIGR00273 TIGR00273 iron-sulfur cluster binding protein; InterPro: IPR004452 Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulphur clusters..
Probab=78.66 E-value=0.59 Score=26.24 Aligned_cols=16 Identities=31% Similarity=0.949 Sum_probs=13.9
Q ss_pred HHHHHHCCCHHHCCCE
Q ss_conf 8888731313228200
Q gi|254781044|r 168 YECVMCACCSTSCPSY 183 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~ 183 (259)
+.|-+||+|..+||+-
T Consensus 346 ylssLCg~C~evCPv~ 361 (450)
T TIGR00273 346 YLSSLCGACREVCPVK 361 (450)
T ss_pred CHHCHHCCCCCCCCCC
T ss_conf 3103410678888511
No 203
>CHL00065 psaC photosystem I subunit VII
Probab=78.47 E-value=0.52 Score=26.61 Aligned_cols=18 Identities=33% Similarity=1.012 Sum_probs=14.9
Q ss_pred HHHHHHHCCCHHHCCCEE
Q ss_conf 888887313132282001
Q gi|254781044|r 167 LYECVMCACCSTSCPSYW 184 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~ 184 (259)
..+||.||.|.++||+-.
T Consensus 45 ~EdCiGC~~Ce~aCPtda 62 (81)
T CHL00065 45 TEDCVGCKRCESACPTDF 62 (81)
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 132766653535589986
No 204
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=78.44 E-value=0.84 Score=25.30 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=12.1
Q ss_pred CCCCCCCHHHHCC
Q ss_conf 6766473455189
Q gi|254781044|r 226 RCHTIMNCTQSCP 238 (259)
Q Consensus 226 ~C~~C~~C~~vCP 238 (259)
.|..||.|..+||
T Consensus 331 ~Cf~CG~C~~~C~ 343 (391)
T TIGR03287 331 DCFGCGYCAEICP 343 (391)
T ss_pred HCCCCCCHHCCCC
T ss_conf 2257650000067
No 205
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=77.30 E-value=0.74 Score=25.63 Aligned_cols=19 Identities=26% Similarity=0.749 Sum_probs=16.1
Q ss_pred HHHHHHHHHCCCHHHCCCE
Q ss_conf 6688888731313228200
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSY 183 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~ 183 (259)
.+..-|-.||.|..+||+-
T Consensus 83 iDYdyCKGCGICa~vCP~~ 101 (130)
T PRK09625 83 VDYSHCKGCGVCVDVCPTN 101 (130)
T ss_pred ECHHHCCCCCHHHHHCCCC
T ss_conf 5767700622146547999
No 206
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=77.16 E-value=0.43 Score=27.13 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHCCCHHHCCC
Q ss_conf 44668888873131322820
Q gi|254781044|r 163 KIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 163 ~~~~~~~CI~CG~C~saCP~ 182 (259)
-+.+...||.|+.|+++||-
T Consensus 157 V~vD~d~CiGc~~Cv~aCPY 176 (321)
T TIGR03478 157 VLVDQERCKGYRYCVEACPY 176 (321)
T ss_pred EEECCCCCCCHHHHHHCCCC
T ss_conf 99640508035799961999
No 207
>TIGR02910 sulfite_red_A sulfite reductase, subunit A; InterPro: IPR014259 This entry represents subunit A, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=75.81 E-value=0.92 Score=25.06 Aligned_cols=14 Identities=36% Similarity=0.963 Sum_probs=12.8
Q ss_pred CCCCCCCHHHHCCC
Q ss_conf 67664734551899
Q gi|254781044|r 226 RCHTIMNCTQSCPK 239 (259)
Q Consensus 226 ~C~~C~~C~~vCPk 239 (259)
+|..||.|..|||.
T Consensus 232 RCI~CGRCn~vCPT 245 (346)
T TIGR02910 232 RCIACGRCNTVCPT 245 (346)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 34457776888876
No 208
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=75.50 E-value=1.1 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.650 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCHHHCCC-EEECC
Q ss_conf 68888873131322820-01022
Q gi|254781044|r 166 GLYECVMCACCSTSCPS-YWWNS 187 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~-~~~~~ 187 (259)
+-..||.||.|.++||. |..++
T Consensus 6 Drd~Cigcg~C~~~aPdvF~~~d 28 (68)
T COG1141 6 DRDTCIGCGACLAVAPDVFDYDD 28 (68)
T ss_pred CHHHCCCCCHHHHCCCCCEEECC
T ss_conf 64650054214340885363679
No 209
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=75.50 E-value=0.57 Score=26.36 Aligned_cols=54 Identities=24% Similarity=0.432 Sum_probs=31.5
Q ss_pred HHHHHHHHHHH--CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 44668888873--1313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 163 KIDGLYECVMC--ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 163 ~~~~~~~CI~C--G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
.++-...|-.| -.|+++||+-+..+.+. |+ + .+.|.+ .|..|+.|+.+||-+
T Consensus 124 ~~yLP~~C~HC~~p~Cv~~CPtgA~yKr~e--------------dG--------i-V~vD~d---~CiGc~~Cv~aCPY~ 177 (321)
T TIGR03478 124 YFYLPRICNHCTNPACLAACPTGAIYKREE--------------DG--------I-VLVDQE---RCKGYRYCVEACPYK 177 (321)
T ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEEECC--------------CC--------E-EEECCC---CCCCHHHHHHCCCCC
T ss_conf 776754146999982325388887488269--------------81--------5-996405---080357999619999
Q ss_pred CC
Q ss_conf 88
Q gi|254781044|r 241 LN 242 (259)
Q Consensus 241 I~ 242 (259)
..
T Consensus 178 ~~ 179 (321)
T TIGR03478 178 KV 179 (321)
T ss_pred CC
T ss_conf 95
No 210
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=75.48 E-value=0.52 Score=26.57 Aligned_cols=60 Identities=25% Similarity=0.518 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHC----CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCC
Q ss_conf 446688888731----3132282001022210114788999885168884313889996228665276766473455189
Q gi|254781044|r 163 KIDGLYECVMCA----CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCP 238 (259)
Q Consensus 163 ~~~~~~~CI~CG----~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCP 238 (259)
-..+..+|..|. .|+.+||+- +|-.-.+ |.. ++ +-.+++ -+ +.|..||+|..-||
T Consensus 892 ~~~e~~RCL~C~~vCe~CvdVCPNR-ANv~i~v-pg~-----------~~-----~~QiiH-~D--~mCNeCGNC~~FCp 950 (1032)
T PRK09853 892 VAQEAARCLECSYVCSKCVDVCPNR-ANVSIAV-PGF-----------QN-----RFQIVH-LD--AYCNECGNCAQFCP 950 (1032)
T ss_pred HCCCCCCCCCCCCHHHHHHCCCCCC-CEEEEEC-CCC-----------CC-----CCEEEE-EH--HHCCCCCCCCCCCC
T ss_conf 1121453456201565441228985-4158864-875-----------65-----444887-30--00435467654189
Q ss_pred CCCCH
Q ss_conf 97888
Q gi|254781044|r 239 KGLNP 243 (259)
Q Consensus 239 kgI~~ 243 (259)
-.=.|
T Consensus 951 ~~~~P 955 (1032)
T PRK09853 951 WNGKP 955 (1032)
T ss_pred CCCCC
T ss_conf 89996
No 211
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=75.47 E-value=0.48 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCHHHCCCEEE
Q ss_conf 668888873131322820010
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~ 185 (259)
.+...|+.||.|+.+||+-+.
T Consensus 187 ~~s~~C~~CG~Cv~vCPvGAL 207 (236)
T PRK07569 187 GTSDACTSCGKCVQACPTGAI 207 (236)
T ss_pred CCCCCCCCCCCCHHCCCCHHC
T ss_conf 444552125653421920226
No 212
>pfam10418 DHODB_Fe-S_bind Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B. Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases, DHODs, A and B. The B enzyme is a prototype for DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a hetero-tetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulfur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulfur cluster. The conformation of the whole molecule means that the iron-sulfur cluster is localized in a well-ordered part of this domain close to the FAD binding site. The FAD and and NAD bindi
Probab=75.41 E-value=1.3 Score=24.18 Aligned_cols=25 Identities=36% Similarity=0.893 Sum_probs=21.4
Q ss_pred EECCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 4045677354430314361266321
Q gi|254781044|r 77 RRSCREGICGSCGMNIDGTNTLACV 101 (259)
Q Consensus 77 r~sCr~giCGsCa~~iNG~~~LAC~ 101 (259)
|..|.-|+||+|.+.+.+..+++|+
T Consensus 3 ~M~CG~G~C~~C~v~~~~~~~~vC~ 27 (38)
T pfam10418 3 RMACGIGACGGCVVGVKGGYKRVCV 27 (38)
T ss_pred CCCCCCCCCCCCEEECCCCEEEEEC
T ss_conf 2437663978579330898398808
No 213
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=75.01 E-value=0.5 Score=26.68 Aligned_cols=58 Identities=28% Similarity=0.570 Sum_probs=32.8
Q ss_pred HHHHHHHHHC----CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 6688888731----313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 165 DGLYECVMCA----CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 165 ~~~~~CI~CG----~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
.+..+|..|. .|+.+||+- +|-.-.+ |.. ++ +-.+++ -+ +.|..||+|..-||-.
T Consensus 878 ~e~~RCL~C~~vCe~CvdVCPNR-ANv~i~v-pg~-----------~~-----~~QiiH-~D--~mCNeCGNC~~FCp~~ 936 (1012)
T TIGR03315 878 QESQRCLECSYVCEKCVDVCPNR-ANIVIYV-PGF-----------RD-----QFQIVH-LD--GMCNECGNCATFCPYD 936 (1012)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCC-CEEEEEC-CCC-----------CC-----CCEEEE-EC--CCCCCCCCCCCCCCCC
T ss_conf 44552456311565441228985-4158864-875-----------66-----544897-30--0043546765418989
Q ss_pred CCH
Q ss_conf 888
Q gi|254781044|r 241 LNP 243 (259)
Q Consensus 241 I~~ 243 (259)
=.|
T Consensus 937 ~~P 939 (1012)
T TIGR03315 937 GAP 939 (1012)
T ss_pred CCC
T ss_conf 996
No 214
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=74.88 E-value=0.99 Score=24.86 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCHH---HHHHHHCCCCCCCCCCCCC
Q ss_conf 1147889998851688843138---8999622866527676647
Q gi|254781044|r 191 LGPAILLQAYRWLIDSRDEFQG---ERLDNLEDPFRLYRCHTIM 231 (259)
Q Consensus 191 lGP~~l~~a~r~~~D~rD~~~~---erl~~l~~~~gi~~C~~C~ 231 (259)
-||..|+++..-....+.-..+ -.|+... .-|+..|.+|-
T Consensus 221 CGP~~Mmk~v~~~~~~~gi~~e~i~vSLE~~M-~CGiG~Cg~C~ 263 (292)
T PRK08345 221 CGPPVMYKFVFKELINRGYRPERIYVTLERRM-RCGIGKCGHCI 263 (292)
T ss_pred ECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCCCCCCCC
T ss_conf 99999999999999975998431799246621-68052878548
No 215
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=73.83 E-value=0.85 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.710 Sum_probs=16.4
Q ss_pred HHHHHHHCCCHHHCCCEEECC
Q ss_conf 888887313132282001022
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNS 187 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~ 187 (259)
...|..||-|+++||+-+..+
T Consensus 203 ~~~C~~CG~Cv~vCP~GAL~~ 223 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSS 223 (819)
T ss_pred CCCCCCCCCHHHHCCCCCCCC
T ss_conf 767701142575397532536
No 216
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=73.63 E-value=0.73 Score=25.68 Aligned_cols=30 Identities=30% Similarity=0.794 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 6688888731313228200102221011478899988
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYR 201 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r 201 (259)
..+++|..|+.|+.+||.- +-|+.-++..|
T Consensus 199 ~Gv~~C~~~~~C~~vCPK~-------I~p~~aI~~lk 228 (243)
T PRK12385 199 NGVWSCTFVGYCSEVCPKH-------VDPAAAIQQGK 228 (243)
T ss_pred CCCCCCCCCCCCCCCCCCC-------CCHHHHHHHHH
T ss_conf 9811798858613729489-------89899999999
No 217
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=73.23 E-value=3 Score=21.84 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=39.4
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCEEEECC----------
Q ss_conf 079999986368888887368998642678811678999999732876388404567-735443031436----------
Q gi|254781044|r 26 NLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCRE-GICGSCGMNIDG---------- 94 (259)
Q Consensus 26 ~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~-giCGsCa~~iNG---------- 94 (259)
.-|++.|-- |.+ .+.+++ .|-++|.+|..- .+-.-+.|.. |-||.|-++|+-
T Consensus 33 g~v~i~in~-----d~~---~~~~~~---~G~~LL~~L~~~------~iflpSaCGG~gtCg~Ck~~v~~ggg~~l~te~ 95 (408)
T PRK05464 33 GDVTIKIND-----DPE---KTITVP---AGGKLLGALASS------GIFVSSACGGGGSCGQCRVKVKEGGGDILPTEL 95 (408)
T ss_pred CCEEEEECC-----CCC---CEEEEC---CCHHHHHHHHHC------CCCCCCCCCCCCEEECCEEEEECCCCCCCCCCC
T ss_conf 857999879-----866---406756---830489988648------936223789996450439999459886640210
Q ss_pred ----------CCCCCCCCCHHC
Q ss_conf ----------126632110000
Q gi|254781044|r 95 ----------TNTLACVKDMKD 106 (259)
Q Consensus 95 ----------~~~LAC~t~~~~ 106 (259)
--+||||+++++
T Consensus 96 ~~~~~~e~~~g~RLsCQv~vk~ 117 (408)
T PRK05464 96 SHISKREAKEGWRLSCQVKVKQ 117 (408)
T ss_pred CCCCHHHHHCCCEEEEEEECCC
T ss_conf 1169989964967742277367
No 218
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=71.56 E-value=0.92 Score=25.06 Aligned_cols=17 Identities=29% Similarity=0.937 Sum_probs=14.4
Q ss_pred HHHHHHHHCCCHHHCCC
Q ss_conf 68888873131322820
Q gi|254781044|r 166 GLYECVMCACCSTSCPS 182 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~ 182 (259)
.++.|..|+.|+++||.
T Consensus 199 G~~~C~~~~~C~~vCPK 215 (235)
T PRK05950 199 GVFRCHTIMNCVEVCPK 215 (235)
T ss_pred CEECCCCCCCCCCCCCC
T ss_conf 81079895872562878
No 219
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=70.53 E-value=0.76 Score=25.57 Aligned_cols=16 Identities=31% Similarity=0.891 Sum_probs=12.8
Q ss_pred HHHHHCCCHHHCCCEE
Q ss_conf 8887313132282001
Q gi|254781044|r 169 ECVMCACCSTSCPSYW 184 (259)
Q Consensus 169 ~CI~CG~C~saCP~~~ 184 (259)
+||.||.|..+|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred CCCCHHHHHHHCCHHH
T ss_conf 5620676564287655
No 220
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=69.42 E-value=1.3 Score=24.18 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=8.2
Q ss_pred EEECCCCCCCCCCCHHCCC
Q ss_conf 3143612663211000047
Q gi|254781044|r 90 MNIDGTNTLACVKDMKDIK 108 (259)
Q Consensus 90 ~~iNG~~~LAC~t~~~~~~ 108 (259)
+-|=|.+.+.=.|.+.-+.
T Consensus 370 igilGpNgiGKTTFvk~LA 388 (591)
T COG1245 370 IGILGPNGIGKTTFVKLLA 388 (591)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998888754677999985
No 221
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211 SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress.
Probab=67.53 E-value=1.1 Score=24.49 Aligned_cols=21 Identities=43% Similarity=0.847 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCC-HHHCCCEEE
Q ss_conf 668888873131-322820010
Q gi|254781044|r 165 DGLYECVMCACC-STSCPSYWW 185 (259)
Q Consensus 165 ~~~~~CI~CG~C-~saCP~~~~ 185 (259)
++++.||.|||= .+.||.++-
T Consensus 104 D~LdgCIGCGCLSLe~C~L~NP 125 (142)
T TIGR01950 104 DQLDGCIGCGCLSLESCPLYNP 125 (142)
T ss_pred HHCCCCCCCCCCCCCCCCCCCC
T ss_conf 6416862367554024788885
No 222
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system; InterPro: IPR011536 This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.; GO: 0009055 electron carrier activity, 0051537 2 iron 2 sulfur cluster binding, 0006118 electron transport.
Probab=67.49 E-value=7.6 Score=19.37 Aligned_cols=57 Identities=23% Similarity=0.498 Sum_probs=39.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCEEEEC-C-----------------------CCCCCCCCC
Q ss_conf 86426788116789999997328763884045677-3544303143-6-----------------------126632110
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREG-ICGSCGMNID-G-----------------------TNTLACVKD 103 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~g-iCGsCa~~iN-G-----------------------~~~LAC~t~ 103 (259)
.++. ++|.+|||+++.-. +...+.|-.. -|-+|.+.|- | ..||.||..
T Consensus 17 ~~e~-~~G~~il~~~~~~~------ie~~hAC~~scACtTCH~IvR~GFdSL~e~~e~EeD~LDkAWGLE~~SRLsCQ~~ 89 (110)
T TIGR02007 17 VVEA-KPGETILDVALDAG------IEIEHACEKSCACTTCHVIVRKGFDSLEEASEKEEDLLDKAWGLEADSRLSCQAV 89 (110)
T ss_pred EEEC-CCCCHHHHHHHHCC------CEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEE
T ss_conf 7865-78846888987479------6251125886521213278725734668887330001233328774576110568
Q ss_pred HHCCCCCEEEE
Q ss_conf 00047851898
Q gi|254781044|r 104 MKDIKGAIAVY 114 (259)
Q Consensus 104 ~~~~~~~i~ie 114 (259)
|.+ ..++||
T Consensus 90 v~~--~Dl~ve 98 (110)
T TIGR02007 90 VAD--EDLVVE 98 (110)
T ss_pred ECC--CEEEEE
T ss_conf 767--302884
No 223
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=67.17 E-value=1.8 Score=23.26 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 1147889998851
Q gi|254781044|r 191 LGPAILLQAYRWL 203 (259)
Q Consensus 191 lGP~~l~~a~r~~ 203 (259)
-||..|+++..-.
T Consensus 196 CGP~pMm~av~~~ 208 (253)
T cd06221 196 CGPPIMMRFVAKE 208 (253)
T ss_pred ECCHHHHHHHHHH
T ss_conf 3999999999999
No 224
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=66.71 E-value=1.5 Score=23.69 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=28.1
Q ss_pred HHHHHHHC--CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 88888731--313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 167 LYECVMCA--CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 167 ~~~CI~CG--~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
..+|-.|- .|+.+||+-- |.+..|++ ...+. -+|..||.|.-+||..
T Consensus 32 ~~~~~~~~~~~l~~aCPA~~---------------Y~~~~~g~---------l~~~y---egClECGTCRvlc~~~ 80 (99)
T COG2440 32 PDDCQECEDKPLIKACPAGC---------------YKLIDDGK---------LRFDY---EGCLECGTCRVLCPHS 80 (99)
T ss_pred CHHHHHCCCHHHHHCCCHHH---------------EEECCCCC---------EEEEE---CCEEECCCEEEECCCC
T ss_conf 02410133114665398878---------------06879986---------89964---6800146325851787
No 225
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=66.40 E-value=1.9 Score=23.15 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCC------------CCC
Q ss_conf 73689986426788116789999997328763884045677354430314361266321100004------------785
Q gi|254781044|r 43 PCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDI------------KGA 110 (259)
Q Consensus 43 ~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~------------~~~ 110 (259)
+.++.|.-++...+=-..++|....+.-|| =.+| =|+.=-|=+.|+|-.-+... +++
T Consensus 111 GaLErFVaD~~R~hGi~~ellref~ek~p~-t~~k----------VAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGG 179 (462)
T TIGR01316 111 GALERFVADYAREHGIEEELLREFEEKAPS-TKKK----------VAVIGAGPAGLACASELAKKGHEVTVFEALHKPGG 179 (462)
T ss_pred CCHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCE----------EEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 201101322201477034210015456788-8877----------99984682146889999747986999971489985
Q ss_pred EEEEECCCCEEEEEEEEEHHHHHHHHHH
Q ss_conf 1898648980441124510479998875
Q gi|254781044|r 111 IAVYPLPHMSVIKDLVVDMSHFYSQHRS 138 (259)
Q Consensus 111 i~iePl~~~pVikDLvVD~~~~~~~~~~ 138 (259)
+.-.=+|+|.+=|.. ||++ .+++++
T Consensus 180 V~~YGIPefRLpKei-~~~E--~k~Lkk 204 (462)
T TIGR01316 180 VLAYGIPEFRLPKEI-VETE--VKKLKK 204 (462)
T ss_pred EEEECCCCCCCCHHH-HHHH--HHHHHH
T ss_conf 675368885487578-8988--887632
No 226
>KOG3309 consensus
Probab=66.08 E-value=11 Score=18.39 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=30.8
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 7999998636888888736899864267881167899999973287638840456773544303143
Q gi|254781044|r 27 LKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNID 93 (259)
Q Consensus 27 ~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iN 93 (259)
...++|+=.+|+ + +-..+...+ |.||||+.+.-.-+.++ +-.-|+ -|-+|-+.|.
T Consensus 41 ~e~i~Itfv~~d--G--~~~~i~g~v---GdtlLd~ah~n~idleG--ACEgsl---ACSTCHViv~ 95 (159)
T KOG3309 41 VEDIKITFVDPD--G--EEIKIKGKV---GDTLLDAAHENNLDLEG--ACEGSL---ACSTCHVIVD 95 (159)
T ss_pred CCEEEEEEECCC--C--CEEEEEEEC---CHHHHHHHHHCCCCCCC--CCCCCC---CCCCEEEEEC
T ss_conf 753789999899--9--788755204---43799999874987656--335621---0131089975
No 227
>pfam06542 PHA-1 Regulator protein PHA-1. This family represents the protein product of the gene pha-1 which coordinates with lin-35 Rb during animal development. The protein is expressed during embryonic development and functions in the cytoplasm. PHA-1 acts in a parallel pathway with UBC-18 to regulate the activity of a common cellular target.
Probab=63.89 E-value=12 Score=18.13 Aligned_cols=107 Identities=15% Similarity=0.257 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCC-------CEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCC----CC-------CEEEEECCCCEE
Q ss_conf 7899999973287-------63884045677354430314361266321100004----78-------518986489804
Q gi|254781044|r 60 LDGLLYIKNKIDP-------TLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDI----KG-------AIAVYPLPHMSV 121 (259)
Q Consensus 60 ld~L~~ik~~~D~-------sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~----~~-------~i~iePl~~~pV 121 (259)
+.+|..|+.+.-. .+-++.-++.+.|-.|++.||++-.--= ++..+ ++ .+.+|++++|..
T Consensus 7 ~aiL~kIR~eh~~V~i~~~~~c~~d~~~~~~~c~~csv~iN~~~~~~~--k~~~~frFLK~v~kIkV~kL~~~~~~~~~~ 84 (381)
T pfam06542 7 NAILHKIRKEHREVVIHKDYHCPYDATIKKYDCPDCSVFINSQKLTES--KLSKYFRFLKSVVKIKVRKLILEDLKHFCL 84 (381)
T ss_pred HHHHHHHHHHCEEEEEECCCCCCCHHCCCCCCCCCCEEEEECEEEHHH--HHHHHHHHHHHHHCEEEEEEEEEECCCCCC
T ss_conf 999999987532999816777980103543468874699701222465--279999999762328999999731104875
Q ss_pred EEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHCCCHHHCCCEE
Q ss_conf 4112451047999887542103466631101112207776544668--88887313132282001
Q gi|254781044|r 122 IKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGL--YECVMCACCSTSCPSYW 184 (259)
Q Consensus 122 ikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~--~~CI~CG~C~saCP~~~ 184 (259)
++++. +.-..+. +...+ -.+-++..-++++ ..|..|+.+..-|+.|+
T Consensus 85 ~~e~l--H~~I~~~-------LIg~n-------~~~veef~Gmd~IC~~GC~~C~~I~~nC~~yG 133 (381)
T pfam06542 85 DREIL--HRLILDS-------LIGNN-------YDRVEEFTGMDDICNLGCDGCARIALNCKRYG 133 (381)
T ss_pred CHHHH--HHHHHHH-------HHCCC-------HHHHHHHHCHHHHHHCCCHHHHHHHHHCHHCC
T ss_conf 07899--9999998-------85762-------77799971888774402488999986332117
No 228
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]; InterPro: IPR010241 This entry represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. In higher plants, ferredoxin is the unique soluble electron carrier protein located in the stroma, and a wide variety of essential metabolic and signalling processes depend upon the reduction by ferredoxin. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photosynthesis. For instance, in Arabidopsis two ferredoxins are leaf-type that support high photosynthetic activity, while one is a root-type that is more efficiently reduced under non-photosynthetic conditions and supporting a higher activity of sulphite reduction .; GO: 0009055 electron carrier activity, 0051537 2 iron 2 sulfur cluster binding, 0006118 electron transport.
Probab=62.66 E-value=3.2 Score=21.70 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCCCCCEEEE-CCCCCCCCCCCHHC
Q ss_conf 8763884045677354430314-36126632110000
Q gi|254781044|r 71 DPTLTLRRSCREGICGSCGMNI-DGTNTLACVKDMKD 106 (259)
Q Consensus 71 D~sl~fr~sCr~giCGsCa~~i-NG~~~LAC~t~~~~ 106 (259)
+..|..-||||+|.|.+|+=.| .|.---.-+..+.+
T Consensus 30 ~~G~~lPysCr~G~Cs~C~G~~~~G~~~q~~~~fl~d 66 (96)
T TIGR02008 30 EEGIDLPYSCRAGACSTCAGKVKEGTVDQSDQSFLDD 66 (96)
T ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 0585455323678744333443206000331210140
No 229
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=60.68 E-value=1.7 Score=23.48 Aligned_cols=17 Identities=29% Similarity=0.747 Sum_probs=10.4
Q ss_pred CCCCCCCHHHHCCCCCC
Q ss_conf 67664734551899788
Q gi|254781044|r 226 RCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI~ 242 (259)
.|+-|..|+-+||=|=+
T Consensus 97 ~CiGC~yC~waCPYgAP 113 (162)
T TIGR02951 97 KCIGCRYCVWACPYGAP 113 (162)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 65343445645878876
No 230
>pfam08882 Acetone_carb_G Acetone carboxylase gamma subunit. Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO(2) to form acetoacetate.
Probab=57.26 E-value=6.1 Score=19.96 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.6
Q ss_pred EECCCCEEEEEEEEEHHHHHHHHH
Q ss_conf 864898044112451047999887
Q gi|254781044|r 114 YPLPHMSVIKDLVVDMSHFYSQHR 137 (259)
Q Consensus 114 ePl~~~pVikDLvVD~~~~~~~~~ 137 (259)
.|.|++||+.|.-.|.+.|+++..
T Consensus 82 ~~~Pg~P~~hD~epDid~f~~~w~ 105 (106)
T pfam08882 82 YLPPGHPPIHDFEPDIDAFYRDWL 105 (106)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHC
T ss_conf 369999805634448999998865
No 231
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=56.35 E-value=12 Score=18.14 Aligned_cols=46 Identities=28% Similarity=0.680 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCEEEE-CCC-----------------CCCCCCCCHH
Q ss_conf 7881167899999973287638840456-77354430314-361-----------------2663211000
Q gi|254781044|r 54 NCGPMVLDGLLYIKNKIDPTLTLRRSCR-EGICGSCGMNI-DGT-----------------NTLACVKDMK 105 (259)
Q Consensus 54 ~~~~tvld~L~~ik~~~D~sl~fr~sCr-~giCGsCa~~i-NG~-----------------~~LAC~t~~~ 105 (259)
+.|.|+||+-+++- .-.|+.|. -|.||.|-+.| .|+ -+|||++++.
T Consensus 15 ~~g~~il~aar~~g------v~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~ 79 (614)
T COG3894 15 DEGTTILDAARRLG------VYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL 79 (614)
T ss_pred CCCCHHHHHHHHHC------CEEEEECCCCCCCCCEEEEEEECCCEECCCHHHHHHHHHHCEEEEEEHHHC
T ss_conf 89960889998618------467630478753243399999087035454057889876332453311005
No 232
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=55.16 E-value=17 Score=17.20 Aligned_cols=90 Identities=21% Similarity=0.364 Sum_probs=51.8
Q ss_pred EEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCEEEE--CC----------
Q ss_conf 99999863688888873689986426788116789999997328763884045677-354430314--36----------
Q gi|254781044|r 28 KEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREG-ICGSCGMNI--DG---------- 94 (259)
Q Consensus 28 ~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~g-iCGsCa~~i--NG---------- 94 (259)
+|+.|- |.+. .+.+|+. |-++|..|..-. +-.-+.|..| -||-|-++| ||
T Consensus 32 ~ti~iN------d~~E--~~~~v~~---G~~LL~~L~~~g------if~sSaCGGgg~C~QCrv~V~~ggge~LpTe~~~ 94 (425)
T TIGR01941 32 VTIKIN------DDEE--KSITVPA---GGKLLNTLASNG------IFISSACGGGGTCGQCRVRVVEGGGEILPTELSH 94 (425)
T ss_pred EEEEEC------CCCC--CEEECCC---CHHHHHHHHHCC------EEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 589861------8744--3577122---147999987578------2312788878846631589963788768775421
Q ss_pred --------CCCCCCCCCHHC-C----CC---------CEEEEECCCCEEEEEEEEEHHHHHH
Q ss_conf --------126632110000-4----78---------5189864898044112451047999
Q gi|254781044|r 95 --------TNTLACVKDMKD-I----KG---------AIAVYPLPHMSVIKDLVVDMSHFYS 134 (259)
Q Consensus 95 --------~~~LAC~t~~~~-~----~~---------~i~iePl~~~pVikDLvVD~~~~~~ 134 (259)
-=||+||+.|.. + .+ .-+|.=-..-.=||-|+|-...-..
T Consensus 95 ~sk~~~keGwRLsCQ~~Vk~Dm~i~~~Ee~fgvk~WeC~V~SN~N~ATFIKEL~l~~p~g~~ 156 (425)
T TIGR01941 95 FSKREAKEGWRLSCQVKVKQDMSIEIPEEVFGVKKWECEVISNDNVATFIKELVLKLPDGES 156 (425)
T ss_pred CCHHHHHCCCEEECCCCCCCCCEEEECEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf 33144521770211322344877873203423110134787779851367898888788883
No 233
>pfam11470 TUG GLUT4 regulating protein TUG. TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site.
Probab=46.77 E-value=18 Score=17.07 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=18.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6899864267881167899999973
Q gi|254781044|r 45 MDTYYVDLDNCGPMVLDGLLYIKNK 69 (259)
Q Consensus 45 ~~~y~v~~~~~~~tvld~L~~ik~~ 69 (259)
+....|.+. +++++.++|...=.+
T Consensus 6 ~rr~~Vkvt-p~t~l~~VL~~ac~k 29 (65)
T pfam11470 6 FRRVTVKVT-PSTTLNQVLEEACKK 29 (65)
T ss_pred CEEEEEEEC-CCCCHHHHHHHHHHH
T ss_conf 848999869-986899999999998
No 234
>pfam02626 AHS2 Allophanate hydrolase subunit 2. This domain forms the second subunit of allophanate hydrolase. In yeast urea amidolyase this domain is found between pfam00289 and pfam00364.
Probab=46.52 E-value=12 Score=18.04 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCCCCC-CCEEEECCCCCCCCCCCHHCCCCCEEEEE
Q ss_conf 8763884045677354-43031436126632110000478518986
Q gi|254781044|r 71 DPTLTLRRSCREGICG-SCGMNIDGTNTLACVKDMKDIKGAIAVYP 115 (259)
Q Consensus 71 D~sl~fr~sCr~giCG-sCa~~iNG~~~LAC~t~~~~~~~~i~ieP 115 (259)
-++|.|...+.-+|+| .+-+.|||++....++..-.-++.++|.+
T Consensus 37 G~~l~~~~~~~iAitGa~~~~~ing~~i~~~~~~~v~~Gd~L~i~~ 82 (270)
T pfam02626 37 GPTLRFEGDTVIALTGADFPATLDGRPVPPWQPILVKAGDVLSIGA 82 (270)
T ss_pred CEEEEECCCCEEEEECCCCCCEECCEECCCCEEEEECCCCEEEECC
T ss_conf 7499988887999989987405886345798169979999998367
No 235
>TIGR02969 mam_aldehyde_ox aldehyde oxidase; InterPro: IPR014313 Members of this entry are mammalian aldehyde oxidase (1.2.3.1 from EC) isozymes, closely related to xanthine dehydrogenase/oxidase.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0051287 NAD binding.
Probab=45.91 E-value=13 Score=17.91 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=38.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECC----------CCCCCCCCCHHCCCC--CEEEEE
Q ss_conf 98642678811678999999732876388404567735443031436----------126632110000478--518986
Q gi|254781044|r 48 YYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDG----------TNTLACVKDMKDIKG--AIAVYP 115 (259)
Q Consensus 48 y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG----------~~~LAC~t~~~~~~~--~i~ieP 115 (259)
.+-.+++ .+++|-- ++.++-= -.-.|+|..|=||+|+++|.- .|.-||.+.+-.+-+ .-|+|-
T Consensus 13 ~e~~vdP-e~mllPy---lrk~lrl-tGt~yGCGGGGCGaCtvmisryn~~tk~irh~P~naCl~PiCslyG~avttveG 87 (1334)
T TIGR02969 13 VEKNVDP-ETMLLPY---LRKKLRL-TGTKYGCGGGGCGACTVMISRYNPVTKKIRHHPVNACLTPICSLYGAAVTTVEG 87 (1334)
T ss_pred ECCCCCC-CHHHHHH---HHHHHEE-CCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 5036882-0234345---5433200-455556788873200245320120121100244112333245531241002313
Q ss_pred C
Q ss_conf 4
Q gi|254781044|r 116 L 116 (259)
Q Consensus 116 l 116 (259)
+
T Consensus 88 i 88 (1334)
T TIGR02969 88 I 88 (1334)
T ss_pred C
T ss_conf 5
No 236
>PRK13669 hypothetical protein; Provisional
Probab=43.53 E-value=14 Score=17.70 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=22.5
Q ss_pred HHCCCCEEE-EECCCCCCCCCCEE----EECCCCCCC
Q ss_conf 732876388-40456773544303----143612663
Q gi|254781044|r 68 NKIDPTLTL-RRSCREGICGSCGM----NIDGTNTLA 99 (259)
Q Consensus 68 ~~~D~sl~f-r~sCr~giCGsCa~----~iNG~~~LA 99 (259)
.+.||.|.. .++|- +-||.|+. .|||+-+-|
T Consensus 23 le~dP~ldV~eygCL-~~CG~C~~~pfALVnGe~V~a 58 (78)
T PRK13669 23 LEKDPNLDVLEYGCL-TYCGICSEGLFALVNGEVVEG 58 (78)
T ss_pred HHCCCCCCEEECCHH-HHHHHHCCCCEEEECCEEEEC
T ss_conf 861999707870666-552102148535888868854
No 237
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=43.23 E-value=14 Score=17.68 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHCC---CHHHCCCEEECCCCCC
Q ss_conf 54466888887313---1322820010222101
Q gi|254781044|r 162 QKIDGLYECVMCAC---CSTSCPSYWWNSDRYL 191 (259)
Q Consensus 162 ~~~~~~~~CI~CG~---C~saCP~~~~~~~~fl 191 (259)
+...++.+|+.||- |.=-||+|+.=++ ||
T Consensus 35 ~A~~qAdRCL~CGn~pyCeWkCPvHN~IP~-Wl 66 (480)
T TIGR01318 35 QAQYQADRCLKCGNKPYCEWKCPVHNAIPN-WL 66 (480)
T ss_pred HHHHHHCCCHHCCCCCCCCCCCCCCCCCHH-HH
T ss_conf 887541012101688885454886667246-89
No 238
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=42.50 E-value=19 Score=16.89 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=32.2
Q ss_pred CCEEEEECCCCCCCC-CCEEEECCCCCCCCCCCHHCCCCCEEEEECC
Q ss_conf 763884045677354-4303143612663211000047851898648
Q gi|254781044|r 72 PTLTLRRSCREGICG-SCGMNIDGTNTLACVKDMKDIKGAIAVYPLP 117 (259)
Q Consensus 72 ~sl~fr~sCr~giCG-sCa~~iNG~~~LAC~t~~~~~~~~i~iePl~ 117 (259)
+++-|+...--++.| .|.+++||++........-.-++++++.+..
T Consensus 59 ~t~~f~~~~~ialTGad~~a~ld~~~i~~~~~~~vk~Gq~L~~g~~~ 105 (314)
T COG1984 59 PTLEFTSDALIALTGADCEATLDGQEVPPWSPYLVKAGQTLKLGRPK 105 (314)
T ss_pred EEEEEECCCEEEEECCCCCCEECCEECCCCCEEECCCCCEEEECCCC
T ss_conf 08998258579995886510689988489964870689989846777
No 239
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=41.38 E-value=17 Score=17.26 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCCC-CCEEEECCCCCCCCCCCHHCCCCCEEEEE
Q ss_conf 8763884045677354-43031436126632110000478518986
Q gi|254781044|r 71 DPTLTLRRSCREGICG-SCGMNIDGTNTLACVKDMKDIKGAIAVYP 115 (259)
Q Consensus 71 D~sl~fr~sCr~giCG-sCa~~iNG~~~LAC~t~~~~~~~~i~ieP 115 (259)
-++|.|...+.-+|+| .+.+.|||++....++..-.-++.++|.+
T Consensus 37 G~~l~~~~~~~iaitGa~~~~~in~~~v~~~~~~~v~~Gd~L~i~~ 82 (280)
T smart00797 37 GPTLRFTADAVIALTGADFPATLDGQPVPPWKPFLVRAGQVLSLGA 82 (280)
T ss_pred CEEEEECCCCEEEEECCCCCCEECCEECCCCEEEEECCCCEEEECC
T ss_conf 7699985798999989886330577135898169978999999357
No 240
>pfam07293 DUF1450 Protein of unknown function (DUF1450). This family consists of several hypothetical bacterial proteins of around 80 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown.
Probab=39.17 E-value=18 Score=17.00 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCEE-EEECCCCCCCCCCEE----EECCCCCCC
Q ss_conf 67899999973287638-840456773544303----143612663
Q gi|254781044|r 59 VLDGLLYIKNKIDPTLT-LRRSCREGICGSCGM----NIDGTNTLA 99 (259)
Q Consensus 59 vld~L~~ik~~~D~sl~-fr~sCr~giCGsCa~----~iNG~~~LA 99 (259)
.-.++... +.||.+. ..++|- +-||.|+. .|||+-+-|
T Consensus 16 ~~~~~~~l--e~~P~~dV~eygCL-~~CG~C~~~pfAlVnGe~V~a 58 (78)
T pfam07293 16 SQAAYEKL--EKDPNLDVLEYGCL-SYCGICAESLFALVNGEIVEG 58 (78)
T ss_pred HHHHHHHH--HCCCCCEEEECCHH-HHHHHHCCCCEEEECCEEEEC
T ss_conf 59999998--53999707871666-663303047513888857864
No 241
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=38.99 E-value=16 Score=17.29 Aligned_cols=83 Identities=16% Similarity=0.394 Sum_probs=40.3
Q ss_pred HHHHHHHHHC--CCHH---------HCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC-C
Q ss_conf 6688888731--3132---------28200102221011478899988516888431388999622866527676647-3
Q gi|254781044|r 165 DGLYECVMCA--CCST---------SCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIM-N 232 (259)
Q Consensus 165 ~~~~~CI~CG--~C~s---------aCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~-~ 232 (259)
.+.++|..|| .|.+ -||+.+.=++ | .=-++.-.||. .-+||..-++-=. |.=--|= =
T Consensus 40 ~Q~aRCMDCGtPFC~~G~~I~G~~sGCP~~NlIPe-f-NdLV~rg~Wk~--------ALdrLh~TNNFPE-FTGRvCPAP 108 (517)
T TIGR01317 40 LQAARCMDCGTPFCHNGALISGFDSGCPINNLIPE-F-NDLVFRGRWKE--------ALDRLHKTNNFPE-FTGRVCPAP 108 (517)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-H-HCCCCCCCHHH--------HHHHHHHHCCCCC-CCCCCCCCC
T ss_conf 03342333778412467643553458876577720-2-10012465489--------9999876467865-677648788
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHHHCC
Q ss_conf 4551899788-8999999999998612
Q gi|254781044|r 233 CTQSCPKGLN-PAKAIAKIKMMLLDRK 258 (259)
Q Consensus 233 C~~vCPkgI~-~~~~I~~LRr~~v~rk 258 (259)
|+-+|=-||+ +.=.|..+.+.+++|+
T Consensus 109 CEgaCtLgI~~dPV~IK~IE~~IIdkg 135 (517)
T TIGR01317 109 CEGACTLGISEDPVGIKSIELEIIDKG 135 (517)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 630000556788853335466656413
No 242
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=37.94 E-value=9.4 Score=18.81 Aligned_cols=17 Identities=41% Similarity=0.860 Sum_probs=11.8
Q ss_pred HHHHHHH--CCCHHHCCCE
Q ss_conf 8888873--1313228200
Q gi|254781044|r 167 LYECVMC--ACCSTSCPSY 183 (259)
Q Consensus 167 ~~~CI~C--G~C~saCP~~ 183 (259)
-+-|=.| -+|+++||.-
T Consensus 180 PRiCeHCLNPsCvasCPsg 198 (513)
T COG1140 180 PRLCEHCLNPSCVASCPSG 198 (513)
T ss_pred HHHHHHCCCCHHHHCCCCC
T ss_conf 8877641891886328865
No 243
>PRK12566 glycine dehydrogenase; Provisional
Probab=36.54 E-value=16 Score=17.37 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf 16789999997328763884045677354430314361
Q gi|254781044|r 58 MVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGT 95 (259)
Q Consensus 58 tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~ 95 (259)
|=-+.|+|||.=.|-+|+..+|.=- =|||.|+.|..
T Consensus 480 SETemmRYik~L~~KDlsLd~sMIP--LGSCTMKLNAt 515 (954)
T PRK12566 480 SETEMLRYLKQLENKDLALNQAMIP--LGSCTMKLNAT 515 (954)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC--CCCEEEECCCH
T ss_conf 5799999999987501366632510--66202303825
No 244
>PRK05367 glycine dehydrogenase; Provisional
Probab=35.82 E-value=21 Score=16.68 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf 16789999997328763884045677354430314361
Q gi|254781044|r 58 MVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGT 95 (259)
Q Consensus 58 tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~ 95 (259)
|=-+.|+|||.=.|-+|+..+|-=- =|||.|+.|..
T Consensus 479 SETemmRYik~Le~KDlsLd~sMIP--LGSCTMKLNAa 514 (955)
T PRK05367 479 SETEMMRYLRRLEDKDLALDRSMIP--LGSCTMKLNAA 514 (955)
T ss_pred CHHHHHHHHHHHHHCCCHHHCCCEE--CCCCEECCCCH
T ss_conf 2799999999987534013205302--56420135614
No 245
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit; InterPro: IPR002023 Respiratory-chain NADH dehydrogenase (ubiquinone) (1.6.5.3 from EC) , (also known as complex I or NADH-ubiquinone oxidoreductase) is an oligomeric enzymatic complex located in the inner mitochondrial membrane which also seems to exist in the chloroplast and in cyanobacteria (as a NADH-plastoquinone oxidoreductase). Among the 25 to 30 polypeptide subunits of this bioenergetic enzyme complex there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to , : Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0006118 electron transport.
Probab=34.33 E-value=20 Score=16.72 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHCCCCEE
Q ss_conf 1167899999973287638
Q gi|254781044|r 57 PMVLDGLLYIKNKIDPTLT 75 (259)
Q Consensus 57 ~tvld~L~~ik~~~D~sl~ 75 (259)
.-||.+|..+|++.+|=|+
T Consensus 18 SA~~~~L~~aQ~~n~Gwv~ 36 (153)
T TIGR01958 18 SAILPALRIAQKQNKGWVS 36 (153)
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999874078648
No 246
>KOG0063 consensus
Probab=33.20 E-value=12 Score=18.24 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=17.4
Q ss_pred HHHHHCCCCCCC-H-HHHH--H-HHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 988516888431-3-8899--9-6228665276766473455189978
Q gi|254781044|r 199 AYRWLIDSRDEF-Q-GERL--D-NLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 199 a~r~~~D~rD~~-~-~erl--~-~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+.||++...-.+ - +..+ . -+.|..-++.=.-...|++..|..+
T Consensus 499 ikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~L 546 (592)
T KOG0063 499 IKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSL 546 (592)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 999977233404444568888876445058974575520024886677
No 247
>TIGR00280 L37a ribosomal protein L37a; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This ribosomal protein is found in archaebacteria and eukaryotes . Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type .; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=31.46 E-value=20 Score=16.79 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCH
Q ss_conf 86652767664734
Q gi|254781044|r 220 DPFRLYRCHTIMNC 233 (259)
Q Consensus 220 ~~~gi~~C~~C~~C 233 (259)
+..|||.|..|++=
T Consensus 50 ~s~GIW~C~~Cg~~ 63 (92)
T TIGR00280 50 ESTGIWKCRKCGAK 63 (92)
T ss_pred CCCCCCCCCCCCCE
T ss_conf 66533402678975
No 248
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.17 E-value=25 Score=16.17 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.9
Q ss_pred EECCCCEEEEEEEEEHHHHHHHHH
Q ss_conf 864898044112451047999887
Q gi|254781044|r 114 YPLPHMSVIKDLVVDMSHFYSQHR 137 (259)
Q Consensus 114 ePl~~~pVikDLvVD~~~~~~~~~ 137 (259)
.|.|++|||.|.--|.+.||+.+-
T Consensus 134 aaap~ypivhdfepdlegfyrdwl 157 (165)
T COG4647 134 AAAPGYPIVHDFEPDLEGFYRDWL 157 (165)
T ss_pred CCCCCCCEECCCCCCHHHHHHHHC
T ss_conf 479998531237842888999870
No 249
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=29.87 E-value=24 Score=16.22 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=30.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCEEEEEC
Q ss_conf 986426788116789999997328763884045677354430314361266321100004785189864
Q gi|254781044|r 48 YYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPL 116 (259)
Q Consensus 48 y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~i~iePl 116 (259)
-++++. .||.|-|.|..+--+... --.++||+-.|--. .+.++..+|-+
T Consensus 13 keiew~-~gmkv~dvlr~vgfntes---------------aiakvngkvaled~----~v~dgdyvevi 61 (67)
T PRK08364 13 KEIEWR-KGMKVADVLRAVGFNTES---------------AIAKVNGRVALEEE----EVKDGDYVEVI 61 (67)
T ss_pred HHHHHH-CCCCHHHHHHHHCCCCHH---------------HHHEECCEEEECCC----CCCCCCEEEEE
T ss_conf 432465-088899999984676076---------------65503766873247----66789738999
No 250
>TIGR02479 FliA_WhiG RNA polymerase sigma factor, FliA/WhiG family; InterPro: IPR012845 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0045449 regulation of transcription.
Probab=29.08 E-value=24 Score=16.31 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=11.5
Q ss_pred EECCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 636888888736899864267881167899999
Q gi|254781044|r 34 RWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYI 66 (259)
Q Consensus 34 R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~i 66 (259)
||||+.|.+ |+||-+.-=. | ..||-|..+
T Consensus 43 ryd~~~g~~--F~TyA~~RIR-G-AmlDELR~~ 71 (227)
T TIGR02479 43 RYDPSKGVK--FETYAVQRIR-G-AMLDELRKL 71 (227)
T ss_pred HCCCCCCCC--CCCHHCCCCH-H-HHHHHHHHC
T ss_conf 318888894--4100011130-2-057887530
No 251
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G; InterPro: IPR010228 This entry represents the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0051536 iron-sulfur cluster binding.
Probab=27.14 E-value=48 Score=14.41 Aligned_cols=153 Identities=20% Similarity=0.352 Sum_probs=82.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCEEEECC-CC-----------C--CCCCC--CHH
Q ss_conf 998642678811678999999732-----876388404567735443031436-12-----------6--63211--000
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKI-----DPTLTLRRSCREGICGSCGMNIDG-TN-----------T--LACVK--DMK 105 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~-----D~sl~fr~sCr~giCGsCa~~iNG-~~-----------~--LAC~t--~~~ 105 (259)
.-+++++ +|.|||+|=....-++ -|-|+-=-+||+ |.|.|-. .| + -||.| .+.
T Consensus 5 g~~~~V~-~g~~vlqAc~~~G~~IPrFC~H~~L~~AGnCRM-----CLVE~~~~~~dk~GnfifWfPKp~asCa~~~pv~ 78 (715)
T TIGR01973 5 GKELEVP-KGTTVLQACLKAGIEIPRFCYHEKLSIAGNCRM-----CLVEVEKDRPDKKGNFIFWFPKPVASCAMQAPVG 78 (715)
T ss_pred CEEEEEC-CCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCCC-----EEEEECCCCCCCCCCEEEECCHHHHHHCCCCCCC
T ss_conf 8678845-887289999965898985423666662000111-----2166457898863466774331355420358787
Q ss_pred CCCCCEEEEE----------------CCCCE------------EEEEEEE----EHHHHHHH-HHHHH-HCCCCCCCCCC
Q ss_conf 0478518986----------------48980------------4411245----10479998-87542-10346663110
Q gi|254781044|r 106 DIKGAIAVYP----------------LPHMS------------VIKDLVV----DMSHFYSQ-HRSIE-PWLKTVSPKPA 151 (259)
Q Consensus 106 ~~~~~i~ieP----------------l~~~p------------VikDLvV----D~~~~~~~-~~~~~-p~~~~~~~~~~ 151 (259)
+ ++.|.- |=|+| =+=|+.| |+|+|+++ -+.++ .|+.
T Consensus 79 ~---Gm~i~t~s~~v~kar~gVmEFLLiNHPLDCPiCDqGGeCdLQD~a~~yG~~~sRf~e~GKR~~~~~~~G------- 148 (715)
T TIGR01973 79 D---GMKISTNSEKVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKGKRTVEDKYLG------- 148 (715)
T ss_pred C---CEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCC-------
T ss_conf 8---648998797999886357899974678887856788886100661776478751321443344688888-------
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1112-207776544668888873131322820010222101147889998851688843138899962286652767664
Q gi|254781044|r 152 KELL-QSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTI 230 (259)
Q Consensus 152 ~e~~-qsped~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C 230 (259)
..+ .+ +-.+||+|-+|+==-- ++.|-.-|--. +|. +.++.---..+...==..
T Consensus 149 -Pliv~t--------~M~RCI~CtRCVRF~~-------evAG~~~LG~~------gRG----~~~~igty~~~~l~SElS 202 (715)
T TIGR01973 149 -PLIVKT--------EMTRCIHCTRCVRFAN-------EVAGVEELGVI------GRG----NHVEIGTYEGKTLESELS 202 (715)
T ss_pred -CCEEEE--------CCCCCCCCCEEEEEEE-------ECCCCCEECCE------ECC----CCCEEEEEECCEECCCCC
T ss_conf -720300--------1234534300122311-------01897012125------178----731686430770022445
Q ss_pred CCHHHHCCCCC
Q ss_conf 73455189978
Q gi|254781044|r 231 MNCTQSCPKGL 241 (259)
Q Consensus 231 ~~C~~vCPkgI 241 (259)
||=.++||.|.
T Consensus 203 GN~id~CPVGA 213 (715)
T TIGR01973 203 GNLIDICPVGA 213 (715)
T ss_pred CCEEEECCCCC
T ss_conf 35267767553
No 252
>TIGR02980 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; InterPro: IPR014322 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:IPR014236 from INTERPRO and SigG:IPR014212 from INTERPRO as well as SigB:IPR014288 from INTERPRO), and the high GC Gram-positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=26.23 E-value=15 Score=17.55 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=9.6
Q ss_pred EEEECCCCCCCCCEEEEEEE
Q ss_conf 98636888888736899864
Q gi|254781044|r 32 IYRWNPDNKGNPCMDTYYVD 51 (259)
Q Consensus 32 i~R~~p~~~~~~~~~~y~v~ 51 (259)
|.||||.-+.+ |.+|-||
T Consensus 46 idrFD~~~g~~--F~tyAVP 63 (229)
T TIGR02980 46 IDRFDPSYGVK--FSTYAVP 63 (229)
T ss_pred HHHHCHHCCCC--CCCCCCC
T ss_conf 75301111698--6641046
No 253
>TIGR02392 rpoH_proteo alternative sigma factor RpoH; InterPro: IPR012759 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the proteobacterial clade of sigma factors called RpoH. This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH. Note that in some species the single locus rpoH may be replaced by two or more differentially regulated stress response sigma factors.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0008270 zinc ion binding, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent, 0009408 response to heat.
Probab=26.18 E-value=9.8 Score=18.69 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=16.5
Q ss_pred EEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 99863688888873689986426788116789999997328
Q gi|254781044|r 31 RIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKID 71 (259)
Q Consensus 31 ~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D 71 (259)
=|+||||+.+. ++-+| |.++||.++-
T Consensus 76 AVkRFdP~~Gv--RLvSf-------------AvHWIkAeIH 101 (279)
T TIGR02392 76 AVKRFDPERGV--RLVSF-------------AVHWIKAEIH 101 (279)
T ss_pred HHHHCCCCCCC--CHHHH-------------HHHHHHHHHH
T ss_conf 34421789872--20478-------------8899999986
No 254
>TIGR01660 narH nitrate reductase, beta subunit; InterPro: IPR006547 The nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and are b-type cytochromes that receive electrons from the quinone pool and transfers them to the beta subunit. The sequences in this family are the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for Gram-positive and Gram-negative bacteria. A few thermophiles and archaea also match the model. A number of the sequences in this set are experimentally characterised, these include: E.Coli NarH (P11349 from SWISSPROT) and NarY (P19318 from SWISSPROT) , , P42176 from SWISSPROT from Bacillus subtilis, and related proteins from Psuedomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans.; GO: 0008940 nitrate reductase activity, 0042126 nitrate metabolic process, 0009325 nitrate reductase complex.
Probab=26.07 E-value=14 Score=17.63 Aligned_cols=106 Identities=19% Similarity=0.320 Sum_probs=51.3
Q ss_pred CEEEEEC-CCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCCHH-------HHHHHHHHHHHHHH--C
Q ss_conf 5189864-89804411245104799988754210346663110-----11122077-------76544668888873--1
Q gi|254781044|r 110 AIAVYPL-PHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPA-----KELLQSHE-------DRQKIDGLYECVMC--A 174 (259)
Q Consensus 110 ~i~iePl-~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~-----~e~~qspe-------d~~~~~~~~~CI~C--G 174 (259)
.++-.|. .++|+-|==.+=...+.+|+..--.|=.-.+..-. ..+-.-.+ +.-..+--+=|=.| =
T Consensus 110 ~L~~ap~~~~~P~aRPrS~~~G~rM~KIEwGPNWE~~Lg~ef~~~~~D~N~~~~~~~i~~~fen~fMMyLPRlCEHClNP 189 (495)
T TIGR01660 110 HLHNAPEGKHQPTARPRSLISGERMEKIEWGPNWEEILGGEFAKRRKDKNFEKIQKDIYGEFENTFMMYLPRLCEHCLNP 189 (495)
T ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHCCCC
T ss_conf 65035011568754775331414565411788704442332122103655789999861001012123111034332773
Q ss_pred CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCC-CCC
Q ss_conf 3132282001022210114788999885168884313889996228665276766473455189-978
Q gi|254781044|r 175 CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCP-KGL 241 (259)
Q Consensus 175 ~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCP-kgI 241 (259)
+|+++||+-+. |+ |++.. ...++.+ .|-.=..|..-|| |.|
T Consensus 190 aCvasCPSGAi--------------YK-----REEDG---ivLiDQ~----~CRgWR~C~sgCPYKKi 231 (495)
T TIGR01660 190 ACVASCPSGAI--------------YK-----REEDG---IVLIDQD----KCRGWRMCISGCPYKKI 231 (495)
T ss_pred CHHCCCCCCCC--------------CE-----EECCC---CEEEECC----CCCCCCEEECCCCCCCE
T ss_conf 00125887552--------------10-----20485---0674025----67743101057886412
No 255
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=25.88 E-value=28 Score=15.90 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 01147889998851688843138899962-2866527676647
Q gi|254781044|r 190 YLGPAILLQAYRWLIDSRDEFQGERLDNL-EDPFRLYRCHTIM 231 (259)
Q Consensus 190 flGP~~l~~a~r~~~D~rD~~~~erl~~l-~~~~gi~~C~~C~ 231 (259)
.+||..++++-..+.-+-.-..--.|+.+ .| |-..|-.|.
T Consensus 852 aIGP~iMMK~vs~~Tk~ygI~TiVSLNpIMVD--GTGMCGaCR 892 (944)
T PRK12779 852 AIGPPLMMRAVSDLTKPYGVKTVASLNSIMVD--ATGMCGACM 892 (944)
T ss_pred EECCHHHHHHHHHHHCCCCCCEEEECCCEEEC--CCCCCCCCC
T ss_conf 98988999999986054699737856775476--788761464
No 256
>TIGR01408 Ube1 ubiquitin-activating enzyme E1; InterPro: IPR000011 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation , , . Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade . The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction.; GO: 0008641 small protein activating enzyme activity, 0006464 protein modification process, 0006512 ubiquitin cycle.
Probab=25.02 E-value=52 Score=14.17 Aligned_cols=52 Identities=12% Similarity=-0.076 Sum_probs=32.2
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCC--CCCCCC
Q ss_conf 36899864267881167899999973287638840456773544303143612--663211
Q gi|254781044|r 44 CMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTN--TLACVK 102 (259)
Q Consensus 44 ~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~--~LAC~t 102 (259)
-||-|.+.- +++.|++|+|++++++. | |.-- +=.||+|-..+|=.| ++|=+.
T Consensus 933 iWDRw~l~G-ked~TL~e~i~~~~~~~-G-le~t----m~s~Gv~lLy~~~~pPk~haeRl 986 (1033)
T TIGR01408 933 IWDRWVLKG-KEDFTLRELIDYLKKEK-G-LEAT----MVSSGVKLLYASVFPPKKHAERL 986 (1033)
T ss_pred ECCCEEECC-CCCCCHHHHHHHHHHCC-C-CCEE----EEECCCEEEECCCCCCHHHHHHH
T ss_conf 613125579-88855899999986404-8-7337----52205000103689853455440
No 257
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=24.91 E-value=34 Score=15.32 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=33.8
Q ss_pred ECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCEEE--EECCCCEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf 045677354430314361266321100004785189--8648980441124510479998875421
Q gi|254781044|r 78 RSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAV--YPLPHMSVIKDLVVDMSHFYSQHRSIEP 141 (259)
Q Consensus 78 ~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~i~i--ePl~~~pVikDLvVD~~~~~~~~~~~~p 141 (259)
+.|-+|+ ||-+|-- ..|- -++...+=.|.| .+....|-=-||||-+..+.+..++..|
T Consensus 5 fACDAGm-GSSaMga---s~lr--k~lk~~gl~i~V~n~aI~~lp~dadlVVt~~~L~~rAk~~~p 64 (87)
T cd05567 5 FACDAGM-GSSAMGA---SVLR--KKLKKAGLEIPVTNSAIDELPSDADLVVTHASLTDRAKKKAP 64 (87)
T ss_pred EECCCCC-CHHHHHH---HHHH--HHHHHCCCCCEEEEEEHHHCCCCCCEEEEHHHHHHHHHHHCC
T ss_conf 9928998-5899999---9999--999984998369980165499864388866999999997689
No 258
>KOG3993 consensus
Probab=23.21 E-value=16 Score=17.39 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8665276766473
Q gi|254781044|r 220 DPFRLYRCHTIMN 232 (259)
Q Consensus 220 ~~~gi~~C~~C~~ 232 (259)
.++|||.|++|++
T Consensus 352 ss~gi~~C~~C~K 364 (500)
T KOG3993 352 SSSGIFSCHTCGK 364 (500)
T ss_pred CCCCEEECHHHHH
T ss_conf 5676056477654
No 259
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=22.52 E-value=58 Score=13.87 Aligned_cols=102 Identities=22% Similarity=0.348 Sum_probs=51.4
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHH-----HHHHHCCCCEEEEECCCCCCCC---CCEEEECCCCCCCCCCCHHCCCCC-
Q ss_conf 8887368998642678811678999-----9997328763884045677354---430314361266321100004785-
Q gi|254781044|r 40 KGNPCMDTYYVDLDNCGPMVLDGLL-----YIKNKIDPTLTLRRSCREGICG---SCGMNIDGTNTLACVKDMKDIKGA- 110 (259)
Q Consensus 40 ~~~~~~~~y~v~~~~~~~tvld~L~-----~ik~~~D~sl~fr~sCr~giCG---sCa~~iNG~~~LAC~t~~~~~~~~- 110 (259)
++...++.|...+.+.+..||.+=+ .|-+ ..|+|.-.- -||=| --.+.-||++.-|-..-+-|+++.
T Consensus 321 gGtSFMEDYTy~f~~g~~~iLGAHMLEvcpsIA~-~KP~levhP---LgIGgk~DP~RLVF~~~~Gpav~vslvD~G~rF 396 (484)
T cd03557 321 GGTSFMEDYTYHFEPGNELVLGAHMLEVCPSIAA-AKPRLEVHP---LGIGGKEDPARLVFTGKAGPAVNASLVDMGNRF 396 (484)
T ss_pred CCCCCCHHHHHCCCCCCEEEHHHHCCCCCHHHHC-CCCEEEECC---CCCCCCCCCCEEEEECCCCCEEEEEEEECCCCE
T ss_conf 9822144544028999844303100556815536-895467615---787886886269997698887999998658847
Q ss_pred -------EEE---EECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC
Q ss_conf -------189---86489804411245104799988754210346663
Q gi|254781044|r 111 -------IAV---YPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP 148 (259)
Q Consensus 111 -------i~i---ePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~ 148 (259)
-.+ +|||++||-|-|=--.-.| ......|+...+.
T Consensus 397 RLivneve~v~p~~~lP~LPVAra~W~P~P~l---~~~a~aWi~AGGa 441 (484)
T cd03557 397 RLVVNEVDAVEPPEDLPNLPVARALWKPEPDL---KTAAEAWILAGGA 441 (484)
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEECCCCCH---HHHHHHHHHCCCC
T ss_conf 99997577746875578886430561479986---9999999872976
No 260
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.
Probab=21.59 E-value=33 Score=15.38 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=15.8
Q ss_pred CCCHHHHH-------HHHHHHHCCCCEEEEEC
Q ss_conf 88116789-------99999732876388404
Q gi|254781044|r 55 CGPMVLDG-------LLYIKNKIDPTLTLRRS 79 (259)
Q Consensus 55 ~~~tvld~-------L~~ik~~~D~sl~fr~s 79 (259)
.|+-+||+ |.+.=|++||+-.|+||
T Consensus 133 RglElLDLIQEG~lGL~RAVEKFDPtrGYKFS 164 (336)
T TIGR02997 133 RGLELLDLIQEGTLGLERAVEKFDPTRGYKFS 164 (336)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68833568876343122112335777788633
No 261
>pfam12225 MTHFR_C Methylene-tetrahydrofolate reductase C terminal. This family is found in bacteria and archaea, and is approximately 100 amino acids in length. There is a conserved NGPCGG sequence motif. This family is the C terminal of methylene-tetrahydrofolate reductase. This protein reduces FAD using the reducing equivalents from reduced FAD, subsequently reduces tetrahydrofolate. The C terminal of MTHFR contains the FAD binding site and is the catalytic portion of the enzyme.
Probab=21.32 E-value=35 Score=15.25 Aligned_cols=10 Identities=40% Similarity=1.195 Sum_probs=4.5
Q ss_pred CCCCEEEECC
Q ss_conf 5443031436
Q gi|254781044|r 85 CGSCGMNIDG 94 (259)
Q Consensus 85 CGsCa~~iNG 94 (259)
||.|.+..-|
T Consensus 26 CG~C~L~~Tg 35 (98)
T pfam12225 26 CGQCRLGETG 35 (98)
T ss_pred CCCEECHHCC
T ss_conf 7882032007
No 262
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=21.09 E-value=49 Score=14.37 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCCCCCCEEEEEEECCC---CCCHHHHHHHHHHH
Q ss_conf 88888736899864267---88116789999997
Q gi|254781044|r 38 DNKGNPCMDTYYVDLDN---CGPMVLDGLLYIKN 68 (259)
Q Consensus 38 ~~~~~~~~~~y~v~~~~---~~~tvld~L~~ik~ 68 (259)
.++..|||.-|+-+... .|.|+||||+.++.
T Consensus 203 ~s~~~PWYkgwe~e~~agvv~G~TL~EA~D~~~~ 236 (445)
T TIGR00483 203 KSENTPWYKGWEKETKAGVVKGKTLLEALDALEP 236 (445)
T ss_pred HHCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCC
T ss_conf 3038885255220002302218458988731047
No 263
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=20.05 E-value=33 Score=15.38 Aligned_cols=12 Identities=8% Similarity=0.357 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCC
Q ss_conf 665276766473
Q gi|254781044|r 221 PFRLYRCHTIMN 232 (259)
Q Consensus 221 ~~gi~~C~~C~~ 232 (259)
..|||.|..|+.
T Consensus 51 a~GIW~C~kC~~ 62 (90)
T PRK03976 51 ATGIWQCRKCGA 62 (90)
T ss_pred EEEEEECCCCCC
T ss_conf 888888899998
Done!