HHsearch results for GI: 254781044 and protein with PDBid: 3c8y_A

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.11  E-value=3e-11  Score=88.81  Aligned_cols=186  Identities=15%  Similarity=0.219  Sum_probs=94.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEEECCC-CCCCCCCCHHCCCCCEEEEE--------
Q ss_conf             99864267881167899999973287638840456--77354430314361-26632110000478518986--------
Q gi|254781044|r   47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCR--EGICGSCGMNIDGT-NTLACVKDMKDIKGAIAVYP--------  115 (259)
Q Consensus        47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr--~giCGsCa~~iNG~-~~LAC~t~~~~~~~~i~ieP--------  115 (259)
                      +++++   +|.|||+|.....-+ =|+|-|.-.+.  .|.|..|.|.|+|+ ...||.|.+.+   ++.|.-        
T Consensus        10 ~v~~~---~g~til~aa~~~gi~-IP~lCy~~~l~~~~g~CR~C~Vev~G~~l~~sC~t~v~~---GM~V~T~s~~v~~~   82 (574)
T 3c8y_A           10 QFNTD---EDTTILKFARDNNID-ISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIED---GMIINTNSDAVNEK   82 (574)
T ss_dssp             EEEEC---CCCBHHHHHHHTTCC-CCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCT---TCEEESSCHHHHHH
T ss_pred             EEEEC---CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCC---CCEEEECCHHHHHH
T ss_conf             99969---999799999975998-460368999879999626279998990047744988889---97899399999999


Q ss_pred             --------CCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC--CCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEE
Q ss_conf             --------489804411245104799988754210346663--1101-11220777654466888887313132282001
Q gi|254781044|r  116 --------LPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP--KPAK-ELLQSHEDRQKIDGLYECVMCACCSTSCPSYW  184 (259)
Q Consensus       116 --------l~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~--~~~~-e~~qsped~~~~~~~~~CI~CG~C~saCP~~~  184 (259)
                              |.+.| ..=++.|....-+-..-...|-.....  .+.. ..........-..+..+||.|+.|+.+||...
T Consensus        83 rk~~le~ll~~hp-~dC~~C~~~g~C~lq~~~~~~g~~~~~~~~~~~~~~~~d~~~p~i~~D~~rCI~C~rCVr~C~e~~  161 (574)
T 3c8y_A           83 IKSRISQLLDIHE-FKCGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNT  161 (574)
T ss_dssp             HHHHHHHHHTTSC-CCCTTCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGGEECCSSSEEEEGGGCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf             9999999984699-879988999975899999985898312045666657655789741104310627888776064655


Q ss_pred             ECCC-CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-HHHHHHHHHHHHH
Q ss_conf             0222-101147889998851688843138899962286652767664734551899788-8999999999998
Q gi|254781044|r  185 WNSD-RYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN-PAKAIAKIKMMLL  255 (259)
Q Consensus       185 ~~~~-~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~-~~~~I~~LRr~~v  255 (259)
                      .... .+.+-..     +    ..-...      ......-..|..||+|..+||.|.- ..+.+.+++..+.
T Consensus       162 ~~~ai~~~~rg~-----~----~~i~~~------~~~~~~~~~C~~Cg~Cv~~CP~gal~~k~~~~~~~~~l~  219 (574)
T 3c8y_A          162 ETYAMKFLNKNG-----K----TIIGAE------DEKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALN  219 (574)
T ss_dssp             SCCCSEEEEETT-----E----EEEESG------GGCCGGGSSCCCCCHHHHHCSSTTEEECCCHHHHHHHHH
T ss_pred             CCEEEEEECCCC-----C----EEECCC------CCCCCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHH
T ss_conf             711665654886-----2----364035------555567753765666886497104003017999998750