HHsearch results for GI: 254781044 and protein with PDBid: 3c8y_A
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.11 E-value=3e-11 Score=88.81 Aligned_cols=186 Identities=15% Similarity=0.219 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEEECCC-CCCCCCCCHHCCCCCEEEEE--------
Q ss_conf 99864267881167899999973287638840456--77354430314361-26632110000478518986--------
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCR--EGICGSCGMNIDGT-NTLACVKDMKDIKGAIAVYP-------- 115 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr--~giCGsCa~~iNG~-~~LAC~t~~~~~~~~i~ieP-------- 115 (259)
+++++ +|.|||+|.....-+ =|+|-|.-.+. .|.|..|.|.|+|+ ...||.|.+.+ ++.|.-
T Consensus 10 ~v~~~---~g~til~aa~~~gi~-IP~lCy~~~l~~~~g~CR~C~Vev~G~~l~~sC~t~v~~---GM~V~T~s~~v~~~ 82 (574)
T 3c8y_A 10 QFNTD---EDTTILKFARDNNID-ISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIED---GMIINTNSDAVNEK 82 (574)
T ss_dssp EEEEC---CCCBHHHHHHHTTCC-CCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCT---TCEEESSCHHHHHH
T ss_pred EEEEC---CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCC---CCEEEECCHHHHHH
T ss_conf 99969---999799999975998-460368999879999626279998990047744988889---97899399999999
Q ss_pred --------CCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC--CCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEE
Q ss_conf --------489804411245104799988754210346663--1101-11220777654466888887313132282001
Q gi|254781044|r 116 --------LPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP--KPAK-ELLQSHEDRQKIDGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 116 --------l~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~--~~~~-e~~qsped~~~~~~~~~CI~CG~C~saCP~~~ 184 (259)
|.+.| ..=++.|....-+-..-...|-..... .+.. ..........-..+..+||.|+.|+.+||...
T Consensus 83 rk~~le~ll~~hp-~dC~~C~~~g~C~lq~~~~~~g~~~~~~~~~~~~~~~~d~~~p~i~~D~~rCI~C~rCVr~C~e~~ 161 (574)
T 3c8y_A 83 IKSRISQLLDIHE-FKCGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNT 161 (574)
T ss_dssp HHHHHHHHHTTSC-CCCTTCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGGEECCSSSEEEEGGGCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9999999984699-879988999975899999985898312045666657655789741104310627888776064655
Q ss_pred ECCC-CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-HHHHHHHHHHHHH
Q ss_conf 0222-101147889998851688843138899962286652767664734551899788-8999999999998
Q gi|254781044|r 185 WNSD-RYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN-PAKAIAKIKMMLL 255 (259)
Q Consensus 185 ~~~~-~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~-~~~~I~~LRr~~v 255 (259)
.... .+.+-.. + ..-... ......-..|..||+|..+||.|.- ..+.+.+++..+.
T Consensus 162 ~~~ai~~~~rg~-----~----~~i~~~------~~~~~~~~~C~~Cg~Cv~~CP~gal~~k~~~~~~~~~l~ 219 (574)
T 3c8y_A 162 ETYAMKFLNKNG-----K----TIIGAE------DEKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALN 219 (574)
T ss_dssp SCCCSEEEEETT-----E----EEEESG------GGCCGGGSSCCCCCHHHHHCSSTTEEECCCHHHHHHHHH
T ss_pred CCEEEEEECCCC-----C----EEECCC------CCCCCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHH
T ss_conf 711665654886-----2----364035------555567753765666886497104003017999998750