HHsearch results for GI: 254781044 and protein with PDBid: 3i9v_1
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=95.02 E-value=0.0031 Score=39.09 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCC-HHHHCCCCCCH
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473-45518997888
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMN-CTQSCPKGLNP 243 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~-C~~vCPkgI~~ 243 (259)
..-..|++|+.|...||.... .....+.+.+. ..+.++.+.+ +-.|..|+. |.-.||..+++
T Consensus 348 ~a~ESCgqC~pCr~G~p~~l~------------~il~~i~~g~~--~~~dl~~l~~---l~~~i~~~s~C~~~~~a~~pl 410 (438)
T 3i9v_1 348 YAHESCGKCTPCREGVAGFMV------------NLFAKIGTGQG--EEKDVENLEA---LLPLIEGRSFCPLADAAVWPV 410 (438)
T ss_dssp HHHHCCSCCHHHHTTTTTHHH------------HHHHHHTTTCC--CHHHHHHHHH---HHHHHTTCCSSTHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHH------------HHHHHHHHCCC--CHHHHHHHHH---HHHHCCCCCCCCCCHHHHHHH
T ss_conf 047778999584888699999------------99999996799--9899999999---997614998267977889999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781044|r 244 AKAIAKIKMMLL 255 (259)
Q Consensus 244 ~~~I~~LRr~~v 255 (259)
...|..-|....
T Consensus 411 ~s~lr~F~~Ef~ 422 (438)
T 3i9v_1 411 KGSLRHFKDQYL 422 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999899999