Query gi|254781044|ref|YP_003065457.1| succinate dehydrogenase iron-sulfur subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 259
No_of_seqs 173 out of 1596
Neff 5.9
Searched_HMMs 23785
Date Wed Jun 1 01:24:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781044.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_B Fumarate reductase iron 100.0 0 0 537.8 18.7 233 24-258 2-235 (243)
2 2wdq_B Succinate dehydrogenase 100.0 0 0 520.4 19.2 231 27-258 2-237 (238)
3 2h88_B Succinate dehydrogenase 100.0 0 0 518.6 19.0 237 22-258 6-246 (252)
4 2bs2_B Quinol-fumarate reducta 100.0 0 0 509.5 19.8 233 25-259 2-240 (241)
5 3c8y_A Iron hydrogenase 1; dit 99.1 3E-11 1.2E-15 88.8 3.5 186 47-255 10-219 (574)
6 3i9v_3 NADH-quinone oxidoreduc 98.7 4.1E-10 1.7E-14 81.7 -3.7 59 165-241 176-234 (783)
7 3hrd_D Nicotinate dehydrogenas 98.4 9.6E-07 4E-11 60.8 7.5 65 47-116 14-80 (160)
8 1rm6_C 4-hydroxybenzoyl-COA re 98.0 2.7E-06 1.1E-10 58.0 2.7 65 47-116 13-79 (161)
9 1dgj_A Aldehyde oxidoreductase 98.0 1.5E-05 6.4E-10 53.4 6.4 63 49-116 14-79 (907)
10 1vlb_A Aldehyde oxidoreductase 97.9 3.1E-05 1.3E-09 51.5 6.7 66 47-117 12-80 (907)
11 1t3q_A Quinoline 2-oxidoreduct 97.9 5.9E-06 2.5E-10 55.9 3.1 66 47-117 20-87 (168)
12 1ffv_A CUTS, iron-sulfur prote 97.9 5.7E-06 2.4E-10 56.0 3.0 63 47-114 14-78 (163)
13 1n62_A Carbon monoxide dehydro 97.8 1.1E-05 4.6E-10 54.3 3.6 67 47-118 14-82 (166)
14 1czp_A Ferredoxin I; [2Fe-2S] 97.8 3.1E-05 1.3E-09 51.4 5.9 58 47-114 15-90 (98)
15 1jq4_A Methane monooxygenase c 97.7 2.5E-05 1.1E-09 52.0 4.6 58 47-114 16-93 (98)
16 1doi_A 2Fe-2S ferredoxin; halo 97.7 2.1E-05 8.7E-10 52.5 3.8 42 45-95 37-79 (128)
17 1frr_A Ferredoxin I; electron 97.7 2.6E-05 1.1E-09 52.0 4.2 57 48-114 13-87 (95)
18 1frd_A Heterocyst [2Fe-2S] fer 97.7 4.9E-05 2.1E-09 50.2 5.2 41 46-95 16-57 (98)
19 1krh_A Benzoate 1,2-dioxygenas 97.6 6.3E-05 2.7E-09 49.5 4.9 51 47-106 17-89 (338)
20 3i9v_9 NADH-quinone oxidoreduc 97.6 1.2E-06 5E-11 60.2 -4.3 64 166-241 49-112 (182)
21 1iue_A Ferredoxin; electron tr 97.6 4.6E-05 2E-09 50.4 3.8 40 47-95 15-55 (98)
22 1awd_A Ferredoxin; electron tr 97.6 5.8E-05 2.4E-09 49.8 4.2 57 49-115 13-87 (94)
23 2w3s_A Xanthine dehydrogenase; 97.5 4.2E-05 1.8E-09 50.7 3.2 67 47-118 11-83 (462)
24 1a70_A Ferredoxin; iron-sulfur 97.5 0.0001 4.4E-09 48.2 5.2 40 47-95 15-55 (97)
25 2pia_A Phthalate dioxygenase r 97.3 0.00036 1.5E-08 44.8 5.9 11 192-202 200-210 (321)
26 1wri_A Ferredoxin II, ferredox 97.3 0.00024 1E-08 45.9 4.5 39 49-95 14-53 (93)
27 1hfe_L Protein (Fe-only hydrog 97.2 4.4E-05 1.9E-09 50.5 -0.3 18 166-183 31-48 (421)
28 2c42_A Pyruvate-ferredoxin oxi 97.0 2.7E-05 1.1E-09 51.8 -2.3 71 166-240 684-757 (1231)
29 1xer_A Ferredoxin; electron tr 97.0 3.2E-05 1.4E-09 51.4 -2.4 56 166-240 41-96 (103)
30 1i7h_A Ferredoxin; 2Fe-2S,elec 97.0 0.00056 2.3E-08 43.7 3.9 57 49-114 18-99 (111)
31 2wlb_A ETP1-FD, electron trans 96.9 0.00071 3E-08 43.0 3.9 61 47-114 15-101 (103)
32 3hui_A Ferredoxin; cytochrome 96.8 0.0043 1.8E-07 38.1 7.3 77 24-114 18-120 (126)
33 3nrz_A Xanthine dehydrogenase/ 96.8 0.00037 1.5E-08 44.8 1.8 49 51-104 18-66 (164)
34 1b9r_A Protein (terpredoxin); 96.6 0.0015 6.5E-08 40.9 4.1 65 47-117 12-104 (105)
35 1jb0_C Photosystem I iron-sulf 96.6 0.00011 4.8E-09 48.0 -1.9 54 168-241 8-61 (80)
36 3lxf_A Ferredoxin; iron, iron- 96.6 0.0018 7.5E-08 40.5 4.0 62 47-114 12-99 (104)
37 2fgo_A Ferredoxin; allochromat 96.5 0.00041 1.7E-08 44.5 0.4 45 168-240 6-56 (82)
38 1l5p_A Ferredoxin; [2Fe-2S] cl 96.4 0.0019 7.9E-08 40.4 3.2 62 47-114 11-92 (93)
39 1kqf_B FDH-N beta, formate deh 96.3 9.2E-06 3.9E-10 54.7 -9.1 62 164-255 127-201 (294)
40 2fdn_A Ferredoxin; electron tr 96.3 0.00073 3.1E-08 43.0 0.5 46 168-241 6-51 (55)
41 3eun_A Ferredoxin; electron tr 96.3 0.0007 2.9E-08 43.1 0.4 46 168-241 6-57 (82)
42 1v97_A XD, xanthine dehydrogen 96.2 0.0014 5.9E-08 41.2 1.8 76 48-127 15-107 (1332)
43 2v2k_A Ferredoxin; iron, 3Fe-4 96.2 0.0015 6.1E-08 41.1 1.7 46 168-241 6-53 (105)
44 2zvs_A Uncharacterized ferredo 96.1 0.00064 2.7E-08 43.3 -0.2 45 168-240 6-56 (85)
45 7fd1_A FD1, protein (7-Fe ferr 96.1 0.0016 6.7E-08 40.9 1.5 46 168-241 6-53 (106)
46 3cf4_A Acetyl-COA decarbonylas 96.1 0.005 2.1E-07 37.8 4.0 76 162-256 409-484 (807)
47 1bc6_A 7-Fe ferredoxin; electr 96.0 0.0012 4.9E-08 41.7 0.7 46 168-241 6-53 (77)
48 1h98_A Ferredoxin; electron tr 96.0 0.0021 8.9E-08 40.1 1.8 46 168-241 6-53 (78)
49 1kqf_B FDH-N beta, formate deh 96.0 0.0026 1.1E-07 39.6 2.1 17 226-242 132-148 (294)
50 1uwm_A Ferredoxin VI, FDVI; el 95.9 0.0068 2.9E-07 36.9 4.3 62 47-114 12-100 (106)
51 1rgv_A Ferredoxin; electron tr 95.9 0.0011 4.5E-08 41.9 0.1 45 168-240 6-56 (80)
52 1xlq_A Putidaredoxin, PDX; [2F 95.9 0.0095 4E-07 36.0 4.9 62 47-114 12-100 (106)
53 1gte_A Dihydropyrimidine dehyd 95.9 0.00061 2.6E-08 43.4 -1.4 48 166-239 949-998 (1025)
54 3gyx_B Adenylylsulfate reducta 95.7 0.00087 3.6E-08 42.5 -1.0 50 167-241 6-60 (166)
55 1e6e_B Adrenodoxin, ADX; flavo 95.7 0.016 6.7E-07 34.7 5.4 63 47-114 18-106 (128)
56 2bt6_A Adrenodoxin 1; rutheniu 95.6 0.022 9.3E-07 33.8 5.8 63 47-114 18-106 (108)
57 1ti6_B Pyrogallol hydroxytrans 95.5 0.0028 1.2E-07 39.3 0.8 18 165-182 94-111 (274)
58 1rof_A Ferredoxin; electron tr 95.5 0.0016 6.8E-08 40.8 -0.4 48 166-240 6-54 (60)
59 2ivf_B Ethylbenzene dehydrogen 95.2 0.0024 1E-07 39.7 -0.1 17 225-241 209-234 (352)
60 1jnr_B Adenylylsulfate reducta 95.1 0.0008 3.4E-08 42.7 -3.0 17 225-241 45-61 (150)
61 3i9v_1 NADH-quinone oxidoreduc 95.0 0.0031 1.3E-07 39.1 -0.2 74 165-255 348-422 (438)
62 1q16_B Respiratory nitrate red 95.0 0.0029 1.2E-07 39.3 -0.4 19 164-182 211-229 (512)
63 1f2g_A Ferredoxin II; electron 94.7 0.00089 3.8E-08 42.4 -3.5 48 168-241 6-54 (58)
64 1dwl_A Ferredoxin I; electron 94.7 0.0038 1.6E-07 38.5 -0.3 48 167-240 6-54 (59)
65 1sj1_A Ferredoxin; thermostabi 94.7 0.002 8.3E-08 40.3 -1.9 51 167-240 8-59 (66)
66 1h0h_B Formate dehydrogenase ( 93.9 0.0078 3.3E-07 36.6 -0.2 59 167-255 107-178 (214)
67 1dax_A Ferredoxin I; electron 93.4 0.005 2.1E-07 37.8 -1.8 51 166-241 7-58 (64)
68 2vpz_B NRFC protein; oxidoredu 92.3 0.015 6.1E-07 34.9 -0.8 47 164-241 84-139 (195)
69 2vdc_G Glutamate synthase [NAD 92.3 0.013 5.4E-07 35.2 -1.0 10 244-253 426-435 (456)
70 2vpz_B NRFC protein; oxidoredu 92.0 0.039 1.6E-06 32.2 1.2 48 168-242 56-105 (195)
71 2ivf_B Ethylbenzene dehydrogen 91.8 0.025 1.1E-06 33.4 0.0 53 164-242 145-199 (352)
72 1iqz_A Ferredoxin; iron-sulfer 90.9 0.018 7.5E-07 34.3 -1.5 58 166-241 7-65 (81)
73 1q16_B Respiratory nitrate red 89.2 0.027 1.2E-06 33.2 -1.7 23 163-185 177-201 (512)
74 3mm5_B Sulfite reductase, diss 84.6 0.28 1.2E-05 27.0 1.3 20 167-186 207-226 (366)
75 1ep3_B Dihydroorotate dehydrog 83.2 0.3 1.2E-05 26.8 1.0 18 190-207 195-213 (262)
76 1jb0_C Photosystem I iron-sulf 82.3 0.14 5.8E-06 28.8 -1.0 18 167-184 44-61 (80)
77 2fgo_A Ferredoxin; allochromat 80.6 0.53 2.2E-05 25.2 1.5 17 168-184 35-57 (82)
78 1xer_A Ferredoxin; electron tr 79.9 0.54 2.3E-05 25.2 1.4 17 168-184 81-97 (103)
79 7fd1_A FD1, protein (7-Fe ferr 79.8 0.25 1.1E-05 27.2 -0.4 20 166-185 35-54 (106)
80 2v2k_A Ferredoxin; iron, 3Fe-4 79.5 0.19 8E-06 27.9 -1.0 18 167-184 36-53 (105)
81 1bc6_A 7-Fe ferredoxin; electr 77.6 0.27 1.1E-05 27.0 -0.7 17 168-184 37-53 (77)
82 2bs2_B Quinol-fumarate reducta 77.5 0.21 8.8E-06 27.7 -1.3 18 165-182 203-220 (241)
83 1h98_A Ferredoxin; electron tr 73.6 0.34 1.4E-05 26.4 -1.1 18 167-184 36-53 (78)
84 1jnr_B Adenylylsulfate reducta 73.0 0.35 1.5E-05 26.3 -1.2 19 167-185 44-62 (150)
85 3gyx_B Adenylylsulfate reducta 72.4 0.36 1.5E-05 26.2 -1.2 15 169-183 45-59 (166)
86 2h88_B Succinate dehydrogenase 70.9 0.35 1.5E-05 26.3 -1.5 17 166-182 211-227 (252)
87 3mm5_A Sulfite reductase, diss 61.2 2.2 9.2E-05 21.4 1.0 15 227-241 286-300 (418)
88 3or1_A Sulfite reductase alpha 60.8 1.7 7E-05 22.1 0.3 17 166-182 299-315 (437)
89 3or1_B Sulfite reductase beta; 58.8 1.1 4.8E-05 23.1 -0.8 17 167-183 255-271 (386)
90 1y56_A Hypothetical protein PH 53.9 5.1 0.00022 19.1 1.9 59 56-118 30-90 (493)
91 1vjk_A Molybdopterin convertin 48.6 13 0.00055 16.6 4.2 83 28-115 10-93 (98)
92 2pmv_A Gastric intrinsic facto 33.8 22 0.00094 15.1 6.2 65 26-95 294-358 (399)
93 2gmh_A Electron transfer flavo 23.2 25 0.0011 14.8 1.3 17 225-241 551-567 (584)
No 1
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B*
Probab=100.00 E-value=0 Score=537.76 Aligned_cols=233 Identities=32% Similarity=0.583 Sum_probs=220.6
Q ss_pred CCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 86079999986368888887368998642678811678999999732876388404567735443031436126632110
Q gi|254781044|r 24 EKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKD 103 (259)
Q Consensus 24 ~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~ 103 (259)
+.+.++|+||||||+.+.+|||++|+|+++ ++|||||+|++||+++||||+||+|||+||||||||+|||+|+|||+|+
T Consensus 2 em~~v~l~I~R~dp~~d~~~~~~~y~v~~~-~~~tvLd~L~~Ik~~~D~sl~fr~~Cr~~iCGsCam~iNG~~~laC~t~ 80 (243)
T 1kf6_B 2 EMKNLKIEVVRYNPEVDTAPHSAFYEVPYD-ATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTF 80 (243)
T ss_dssp CCEEEEEEEEECCTTTCSSCEEEEEEEEEC-TTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCB
T ss_pred CCCEEEEEEEEECCCCCCCCEEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHCC
T ss_conf 975789999985899899864699997179-9982999999998353897357616888988743689899732324054
Q ss_pred HHCCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf 000478518986489804411245104799988754210346663-1101112207776544668888873131322820
Q gi|254781044|r 104 MKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP-KPAKELLQSHEDRQKIDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 104 ~~~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~-~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~ 182 (259)
++++.++++||||++||||||||||+++||+++++++||+.+... .++.+.+|+|+++++++++++||+||+|+++||+
T Consensus 81 i~~~~~~i~iePL~~~pVikDLvVD~s~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~s~Cp~ 160 (243)
T 1kf6_B 81 LRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQ 160 (243)
T ss_dssp GGGCTTCEEEECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCGGGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHH
T ss_pred CCCCCCCCEEEECCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCH
T ss_conf 40002442011236673665677667489999885145014788887622234787799998745540200004641051
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 0102221011478899988516888431388999622866527676647345518997888999999999998612
Q gi|254781044|r 183 YWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 183 ~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rk 258 (259)
+..++ .|+||++++++|||..|+||..+.+||+.+.+++|+|+|++|++|+++|||||+|+++|+.||+++++..
T Consensus 161 ~~~~~-~f~GP~~~~~a~r~~~D~rd~~~~erl~~~~~~~Gi~~C~~~~~C~~vCPk~I~p~~~I~~lr~~~~~~~ 235 (243)
T 1kf6_B 161 FGLNP-EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDF 235 (243)
T ss_dssp HHHCT-TSCCHHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHCC-CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 13213-4356999998740344640232999999865589920898868812308899998999999999999999
No 2
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=100.00 E-value=0 Score=520.37 Aligned_cols=231 Identities=54% Similarity=1.053 Sum_probs=218.2
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 7999998636888888736899864267-881167899999973287638840456773544303143612663211000
Q gi|254781044|r 27 LKEYRIYRWNPDNKGNPCMDTYYVDLDN-CGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMK 105 (259)
Q Consensus 27 ~~~~~i~R~~p~~~~~~~~~~y~v~~~~-~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~ 105 (259)
.+||+||||||+++.++|||+|+|++++ .+|||||+|++||+ +||||+||+|||+||||||||+|||+|+|||+|++.
T Consensus 2 ~v~l~i~R~~p~~~~~~~~~~~~v~~~~~~~~tvL~~L~~ik~-~d~~l~fr~~Cr~giCGsc~~~iNG~~~lac~t~i~ 80 (238)
T 2wdq_B 2 RLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKE-KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPIS 80 (238)
T ss_dssp EEEEEEEECCTTTCSSCEEEEEEEECCTTCCCBHHHHHHHHHH-HCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBGG
T ss_pred EEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEHH
T ss_conf 6899999618999988726899982378998649999999985-099768864889888984769838988876527788
Q ss_pred CC---CCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 04---78518986489804411245104799988754210346663-110111220777654466888887313132282
Q gi|254781044|r 106 DI---KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP-KPAKELLQSHEDRQKIDGLYECVMCACCSTSCP 181 (259)
Q Consensus 106 ~~---~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~-~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP 181 (259)
++ +++|+||||++||||||||||+++||+++++++||+.+..+ .++.+.+|+|+++.+++++++||.||+|.++||
T Consensus 81 ~~~~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~s~Cp 160 (238)
T 2wdq_B 81 ALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP 160 (238)
T ss_dssp GTCCTTSCEEEECCTTSBEEETTEECCHHHHHHHHHTCCSCCCCCSSCCSSSCCCCHHHHHTTTTTTTCCCCCTTGGGCH
T ss_pred HHHCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCEECCCCC
T ss_conf 86457980899677889645554760099999976228574368999861011048567999987556465085121256
Q ss_pred CEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 00102221011478899988516888431388999622866527676647345518997888999999999998612
Q gi|254781044|r 182 SYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 182 ~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rk 258 (259)
++..++++|+||++++++||++.|+||..+.+|++.+.+++|+|+|++|++|+++|||||+|+++|.+||+++++|.
T Consensus 161 ~~~~~~~~~lGP~~l~~~~r~~~D~rd~~~~~rl~~l~~~~Gv~~Ct~c~~C~~vCPkgI~~~~~I~~lr~~l~~r~ 237 (238)
T 2wdq_B 161 SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRN 237 (238)
T ss_dssp HHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 43037724578899999998721455401999999863679810798988933229899999999999999998626
No 3
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 1zoy_B* 1zp0_B*
Probab=100.00 E-value=0 Score=518.62 Aligned_cols=237 Identities=64% Similarity=1.215 Sum_probs=222.7
Q ss_pred CCCCCEEEEEEEEECCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCC
Q ss_conf 788607999998636888-8887368998642678811678999999732876388404567735443031436126632
Q gi|254781044|r 22 TGEKNLKEYRIYRWNPDN-KGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLAC 100 (259)
Q Consensus 22 ~~~~~~~~~~i~R~~p~~-~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC 100 (259)
..+++++||+||||||+. +.+||||+|+|++++.+|||||+|++||+++||||+||++||+||||||||+|||+++|||
T Consensus 6 ~~~~~~~~l~I~R~~p~~~~~~~~~~~y~v~~~~~~~tvLdaL~~Ik~~~d~sl~fr~~Cr~giCGsCam~ING~~~LAC 85 (252)
T 2h88_B 6 AATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLAC 85 (252)
T ss_dssp --CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGG
T ss_pred CCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCE
T ss_conf 77663689999986899999886489999788889866999999997207996488727877998740899899061233
Q ss_pred CCCHHCC-CCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf 1100004-7851898648980441124510479998875421034666311--011122077765446688888731313
Q gi|254781044|r 101 VKDMKDI-KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKP--AKELLQSHEDRQKIDGLYECVMCACCS 177 (259)
Q Consensus 101 ~t~~~~~-~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~--~~e~~qsped~~~~~~~~~CI~CG~C~ 177 (259)
+|++.++ +++++||||++||||||||||+++||+++++++||+.+....+ ..+.+|+++++.+++.+++||+||+|.
T Consensus 86 ~t~~~~~~~~~i~iePl~~fpVIkDLvVD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ci~C~~C~ 165 (252)
T 2h88_B 86 TKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCS 165 (252)
T ss_dssp GSBCCCCTTSCEEEECSTTCBEEETTEECCHHHHHHHHHTCCSCCCSCCTTTTSSCCCCCHHHHHTTTTTTTCCCCCTTG
T ss_pred EEEEECCCCCCEEEECCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 67600056661467128998130257203658786655114402468888864213458988999999862505541302
Q ss_pred HHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 22820010222101147889998851688843138899962286652767664734551899788899999999999861
Q gi|254781044|r 178 TSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257 (259)
Q Consensus 178 saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~r 257 (259)
++||++..++++|+||++++++|||+.|+||+...+|++.+.+++|+|+|++|++|+++||+||+|+++|..||++++++
T Consensus 166 ~~Cp~~~~~~~~f~GP~~~~~~~r~~~d~rd~~~~erl~~~~~~~g~~~C~~c~~C~~vCPkgI~~~~~I~~lrr~~~~~ 245 (252)
T 2h88_B 166 TSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATY 245 (252)
T ss_dssp GGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHC
T ss_pred HCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 00553111860126999999999756587630089999985178881279783852234799999799999999999986
Q ss_pred C
Q ss_conf 2
Q gi|254781044|r 258 K 258 (259)
Q Consensus 258 k 258 (259)
|
T Consensus 246 k 246 (252)
T 2h88_B 246 K 246 (252)
T ss_dssp C
T ss_pred H
T ss_conf 3
No 4
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=100.00 E-value=0 Score=509.51 Aligned_cols=233 Identities=28% Similarity=0.545 Sum_probs=211.9
Q ss_pred CCEEEEEEEEECCCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 6079999986368888-887368998642678811678999999732876388404567735443031436126632110
Q gi|254781044|r 25 KNLKEYRIYRWNPDNK-GNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKD 103 (259)
Q Consensus 25 ~~~~~~~i~R~~p~~~-~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~ 103 (259)
++++||+||||||+++ .+||||+|+|++. +++||||+|++||+++||||+||+|||+||||||||+|||+++|||+|+
T Consensus 2 ~~~i~~~I~R~~p~~~~~~~~~~~y~v~~~-~~~tvLd~L~~i~~~~d~~l~fr~~Cr~giCGsC~m~ING~~~LAC~~~ 80 (241)
T 2bs2_B 2 GRMLTIRVFKYDPQSAVSKPHFQEYKIEEA-PSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTL 80 (241)
T ss_dssp CCEEEEEEEECCTTCTTCCCEEEEEEEECC-TTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCB
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEECCC-CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCHHHHEE
T ss_conf 945899999879999887873489996489-9985999999997415997278567777888766778899222455320
Q ss_pred HHCC-CCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 0004-78518986489804411245104799988754210346663---1101112207776544668888873131322
Q gi|254781044|r 104 MKDI-KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP---KPAKELLQSHEDRQKIDGLYECVMCACCSTS 179 (259)
Q Consensus 104 ~~~~-~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~---~~~~e~~qsped~~~~~~~~~CI~CG~C~sa 179 (259)
+.++ +++|+||||++||||||||||+++||++++++.+|+..... ..+.+..++|+++++++++++||+||+|+++
T Consensus 81 ~~~~~~~~i~iePl~~fpVikDLvVD~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ci~Cg~C~~~ 160 (241)
T 2bs2_B 81 TKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAA 160 (241)
T ss_dssp GGGCTTSEEEEECCTTSEEEETTEEECHHHHHHHHHHTTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCCHHHHT
T ss_pred EEECCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHC
T ss_conf 00248982899677668502216750289888776511443356666776632244570245541245666716866645
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH-HHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8200102221011478899988516888431388-999622866527676647345518997888999999999998612
Q gi|254781044|r 180 CPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGE-RLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRK 258 (259)
Q Consensus 180 CP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~e-rl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rk 258 (259)
||++..++ .|+||+++.+++|+..|+||....+ +++.+.+++|+|+|++|++|+++||+||++++.|..|||++++++
T Consensus 161 CP~~~~~~-~~~gp~~~~~~~r~~~d~rd~~~~~~~~~~~~~~~gi~~C~~c~~C~~vCP~gI~~~~~I~~lrr~~~~~~ 239 (241)
T 2bs2_B 161 CGTKIMRE-DFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSVN 239 (241)
T ss_dssp CHHHHHCT-TCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCC-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99843254-65662678888774118721668999999852777743798858800028899998999999999999711
Q ss_pred C
Q ss_conf 9
Q gi|254781044|r 259 I 259 (259)
Q Consensus 259 l 259 (259)
|
T Consensus 240 ~ 240 (241)
T 2bs2_B 240 M 240 (241)
T ss_dssp -
T ss_pred C
T ss_conf 7
No 5
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.11 E-value=3e-11 Score=88.81 Aligned_cols=186 Identities=15% Similarity=0.219 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEEECCC-CCCCCCCCHHCCCCCEEEEE--------
Q ss_conf 99864267881167899999973287638840456--77354430314361-26632110000478518986--------
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCR--EGICGSCGMNIDGT-NTLACVKDMKDIKGAIAVYP-------- 115 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr--~giCGsCa~~iNG~-~~LAC~t~~~~~~~~i~ieP-------- 115 (259)
+++++ +|.|||+|.....-+ =|+|-|.-.+. .|.|..|.|.|+|+ ...||.|.+.+ ++.|.-
T Consensus 10 ~v~~~---~g~til~aa~~~gi~-IP~lCy~~~l~~~~g~CR~C~Vev~G~~l~~sC~t~v~~---GM~V~T~s~~v~~~ 82 (574)
T 3c8y_A 10 QFNTD---EDTTILKFARDNNID-ISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIED---GMIINTNSDAVNEK 82 (574)
T ss_dssp EEEEC---CCCBHHHHHHHTTCC-CCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCT---TCEEESSCHHHHHH
T ss_pred EEEEC---CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCC---CCEEEECCHHHHHH
T ss_conf 99969---999799999975998-460368999879999626279998990047744988889---97899399999999
Q ss_pred --------CCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCC--CCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEE
Q ss_conf --------489804411245104799988754210346663--1101-11220777654466888887313132282001
Q gi|254781044|r 116 --------LPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP--KPAK-ELLQSHEDRQKIDGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 116 --------l~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~--~~~~-e~~qsped~~~~~~~~~CI~CG~C~saCP~~~ 184 (259)
|.+.| ..=++.|....-+-..-...|-..... .+.. ..........-..+..+||.|+.|+.+||...
T Consensus 83 rk~~le~ll~~hp-~dC~~C~~~g~C~lq~~~~~~g~~~~~~~~~~~~~~~~d~~~p~i~~D~~rCI~C~rCVr~C~e~~ 161 (574)
T 3c8y_A 83 IKSRISQLLDIHE-FKCGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNT 161 (574)
T ss_dssp HHHHHHHHHTTSC-CCCTTCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGGEECCSSSEEEEGGGCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9999999984699-879988999975899999985898312045666657655789741104310627888776064655
Q ss_pred ECCC-CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-HHHHHHHHHHHHH
Q ss_conf 0222-101147889998851688843138899962286652767664734551899788-8999999999998
Q gi|254781044|r 185 WNSD-RYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN-PAKAIAKIKMMLL 255 (259)
Q Consensus 185 ~~~~-~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~-~~~~I~~LRr~~v 255 (259)
.... .+.+-.. + ..-... ......-..|..||+|..+||.|.- ..+.+.+++..+.
T Consensus 162 ~~~ai~~~~rg~-----~----~~i~~~------~~~~~~~~~C~~Cg~Cv~~CP~gal~~k~~~~~~~~~l~ 219 (574)
T 3c8y_A 162 ETYAMKFLNKNG-----K----TIIGAE------DEKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALN 219 (574)
T ss_dssp SCCCSEEEEETT-----E----EEEESG------GGCCGGGSSCCCCCHHHHHCSSTTEEECCCHHHHHHHHH
T ss_pred CCEEEEEECCCC-----C----EEECCC------CCCCCCCCCCHHHHHHHHHCCCCHHCCCHHHHHHHHHHH
T ss_conf 711665654886-----2----364035------555567753765666886497104003017999998750
No 6
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.66 E-value=4.1e-10 Score=81.70 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+..+||.||.|+-+|--+.... .+|- ..|.... .+....+-..|..||+|.++||.|-
T Consensus 176 ~d~~rCI~C~rCvr~c~ev~g~~--~l~~-----------~~rg~~~-----~i~~~~~~~~~~~~G~cv~~CPvGA 234 (783)
T 3i9v_3 176 LDRERCIHCKRCVRYFEEVPGDE--VLDF-----------IERGVHT-----FIGTMDFGLPSGFSGNITDICPVGA 234 (783)
T ss_dssp ECTTTCCCCCHHHHHHHHTTCCC--CCEE-----------CSCTTSC-----CEECSSTTCCSTTTTTHHHHCSSSS
T ss_pred ECCCCCCCCHHHHHHHHHHCCCC--CCCC-----------EEECCCE-----EEEECCCCCCCCCCCCHHHHCCCCE
T ss_conf 33662434518898876523865--3033-----------1216720-----7620244212444575021167533
No 7
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.38 E-value=9.6e-07 Score=60.83 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=48.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCC--EEEEEC
Q ss_conf 9986426788116789999997328763884045677354430314361266321100004785--189864
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGA--IAVYPL 116 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~--i~iePl 116 (259)
.++++++ ++.++||.|+. + -+-.+-+.+|.+|.||+|+|.|||+++.+|.+.+..+.+. .|||=|
T Consensus 14 ~~~~~v~-~~~~Ll~~LR~---~-lgltg~K~GC~~G~CGaCtVlvdg~~v~SC~~~a~~~~G~~I~TiEgl 80 (160)
T 3hrd_D 14 ARSIVTE-PNKRLLDLLRE---D-FGLTSVKEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGV 80 (160)
T ss_dssp EEEEEEC-SSSBHHHHHHT---T-SCCTTSCCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGT
T ss_pred EEEEECC-CCCCHHHHHHH---C-CCCCCCCCCCCCCCCCCEEEEECCCEECCCEEEHHHHCCCEECCCCCC
T ss_conf 9898569-99859999975---1-699866768688888860899868485130036877488221010155
No 8
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.97 E-value=2.7e-06 Score=58.01 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=48.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCC--EEEEEC
Q ss_conf 9986426788116789999997328763884045677354430314361266321100004785--189864
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGA--IAVYPL 116 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~--i~iePl 116 (259)
.++++++ +++++||.|+. +.. =.+-+.+|..|.||+|+|.|||+++.+|.+....+.+. +|||=|
T Consensus 13 ~~~~~v~-~~~~Ll~~LR~---~lg-ltgtK~GC~~G~CGACtVlvdg~~~~SCl~~a~~~~g~~I~TvEgl 79 (161)
T 1rm6_C 13 AREDLVP-DNMLLLDYLRE---TVG-LTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESL 79 (161)
T ss_dssp EEEEEEE-TTCBHHHHHHH---TTC-CTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGS
T ss_pred EEEEECC-CCCCHHHHHHH---CCC-CCCCCCCCCCCCCCCCEEEEECEECCCCCHHHHHHCCEEEEEEECC
T ss_conf 9896479-99869999975---279-9766768688888887765621002233310153078379976234
No 9
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=97.96 E-value=1.5e-05 Score=53.38 Aligned_cols=63 Identities=19% Similarity=0.450 Sum_probs=45.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC---CEEEEEC
Q ss_conf 8642678811678999999732876388404567735443031436126632110000478---5189864
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG---AIAVYPL 116 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~---~i~iePl 116 (259)
+++.+ +++|+|+.|.. +. +=-+-..+|.+|-||+|.|.|||+++-||.+.+..+.+ .+|||=|
T Consensus 14 ~~~~~-~~~~l~~~LR~---~l-~l~g~K~gC~~G~CGaCtV~vdg~~~~sCl~~~~~~a~g~~v~TvEgl 79 (907)
T 1dgj_A 14 RLLVS-PNDLLVDVLRS---QL-QLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGI 79 (907)
T ss_dssp EEEEC-TTCBHHHHHHH---TT-CCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGT
T ss_pred EEECC-CCCHHHHHHHH---HC-CCCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHCCCCEEEECCCC
T ss_conf 86069-88719999987---37-983667888999988468999994866646669987699889933788
No 10
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.87 E-value=3.1e-05 Score=51.50 Aligned_cols=66 Identities=24% Similarity=0.508 Sum_probs=48.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCC-CC--CEEEEECC
Q ss_conf 9986426788116789999997328763884045677354430314361266321100004-78--51898648
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDI-KG--AIAVYPLP 117 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~-~~--~i~iePl~ 117 (259)
.++++++ +++++++.|+ ++. +=..-..+|.+|.||+|.+.|||+++-||.+.+..+ ++ .+|||=|.
T Consensus 12 ~~~~~~~-~~~~L~~~LR---~~l-~l~g~K~gC~~G~CGaCtV~vdg~~v~sCl~~~~~~~~G~~v~TvEGl~ 80 (907)
T 1vlb_A 12 EQNLFVD-AEALLSDVLR---QQL-GLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVG 80 (907)
T ss_dssp EEEEEEC-TTSBHHHHHH---HTT-CCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHHC
T ss_pred EEEECCC-CCCHHHHHHH---HHC-CCCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHCCCCEEEECCCCC
T ss_conf 8785369-7763999998---746-9963566748989874389999928655276699866898899257879
No 11
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=97.87 E-value=5.9e-06 Score=55.93 Aligned_cols=66 Identities=23% Similarity=0.390 Sum_probs=48.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCC--EEEEECC
Q ss_conf 9986426788116789999997328763884045677354430314361266321100004785--1898648
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGA--IAVYPLP 117 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~--i~iePl~ 117 (259)
.++++++ +++++|+.|+. ++. =.+-+.+|.+|.||+|+|.|||+++.+|.+.+..+.+. .|||=|.
T Consensus 20 ~~~~~v~-p~~~Ll~~LR~---~lg-ltgtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~I~TvEgl~ 87 (168)
T 1t3q_A 20 PRVFYVE-PRMHLADALRE---VVG-LTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLS 87 (168)
T ss_dssp EEEEEEC-TTSBHHHHHHH---TTC-CTTSCCSCSSSSSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTC
T ss_pred EEEEECC-CCCCHHHHHHH---CCC-CCCCCCCCCCCCCCCCEEEECCCCCCEEEEEHHHCCCCEEEEECCCC
T ss_conf 8898579-99989999862---239-98667786888988888967785344012688574885899865533
No 12
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.87 E-value=5.7e-06 Score=56.02 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=46.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCCC--EEEE
Q ss_conf 9986426788116789999997328763884045677354430314361266321100004785--1898
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGA--IAVY 114 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~~--i~ie 114 (259)
.++++++ +++++||.|+. + -+=..-+.+|..|.||+|++.|||+++.+|.+.+..+++. +|||
T Consensus 14 ~~~~~v~-p~~~Ll~~LR~---~-~gl~gtK~gC~~G~CGaCtVlvdg~~v~SCl~~a~~~~g~~I~TvE 78 (163)
T 1ffv_A 14 AQEKAVE-PRTLLIHFLRE---E-LNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVE 78 (163)
T ss_dssp EEEEEEC-TTCBHHHHHHH---T-SCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGG
T ss_pred EEEEECC-CCCCHHHHHHC---C-CCCCCCCCCCCCCCCCCCEEECCCCEEEHHHHHHHHHCCCEEEEEE
T ss_conf 9896379-99989999961---2-5997650562776768725701886541255778873696179884
No 13
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.81 E-value=1.1e-05 Score=54.28 Aligned_cols=67 Identities=12% Similarity=0.275 Sum_probs=49.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC--CEEEEECCC
Q ss_conf 998642678811678999999732876388404567735443031436126632110000478--518986489
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG--AIAVYPLPH 118 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~--~i~iePl~~ 118 (259)
.++++++ ++.++||.|+. +.+- -.-+.+|.+|.||+|++.|||+++-+|.+.+..+.+ ..|||=|.+
T Consensus 14 ~~~~~v~-p~~~Ll~~LR~---~l~l-tgtK~GC~~G~CGACTVlvdg~~v~SCl~~a~~~~g~~I~TvEgl~~ 82 (166)
T 1n62_A 14 PVEALVE-PRTLLIHFIRE---QQNL-TGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAA 82 (166)
T ss_dssp EEEEEEC-TTCBHHHHHHH---TSCC-TTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGSSC
T ss_pred EEEEECC-CCCCHHHHHHH---CCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCEEEEEECCCC
T ss_conf 9897479-99999999960---4899-32234607878898487238821143302265609965898403478
No 14
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron transport; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 4fxc_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A 2kaj_A 2pvg_C ...
Probab=97.81 E-value=3.1e-05 Score=51.44 Aligned_cols=58 Identities=24% Similarity=0.442 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE-CCCC-----------------CCCCCCCHHCCC
Q ss_conf 9986426788116789999997328763884045677354430314-3612-----------------663211000047
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI-DGTN-----------------TLACVKDMKDIK 108 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i-NG~~-----------------~LAC~t~~~~~~ 108 (259)
.+++++. +|.|+||++.+.. +.+.++||.|+||+|.++| .|.. +|||+++...
T Consensus 15 ~~~~~v~-~g~tlLdaa~~~G------i~i~~~C~~G~Cg~C~~~v~~G~v~~~~~~~l~~~~~~~g~~L~C~~~~~~-- 85 (98)
T 1czp_A 15 KHEIEVP-DDEYILDAAEEQG------YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTS-- 85 (98)
T ss_dssp EEEEEEE-TTSCHHHHHHHTT------CCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS--
T ss_pred EEEEEEC-CCCCHHHHHHHCC------CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCEEEECCCEECC--
T ss_conf 7999969-5981999999859------997747999614888778762857146244689778639989976099897--
Q ss_pred CCEEEE
Q ss_conf 851898
Q gi|254781044|r 109 GAIAVY 114 (259)
Q Consensus 109 ~~i~ie 114 (259)
.++|+
T Consensus 86 -d~~ie 90 (98)
T 1czp_A 86 -DVVIQ 90 (98)
T ss_dssp -CEEEE
T ss_pred -CEEEE
T ss_conf -99997
No 15
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=97.74 E-value=2.5e-05 Score=52.00 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=40.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE-CCCC-------------------CCCCCCCHHC
Q ss_conf 9986426788116789999997328763884045677354430314-3612-------------------6632110000
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI-DGTN-------------------TLACVKDMKD 106 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i-NG~~-------------------~LAC~t~~~~ 106 (259)
.+++++. +|.++||++.+-. +.+.++|+.|.||+|.++| +|.. +|||++....
T Consensus 16 ~~~~~~~-~g~slL~aa~~~G------i~i~~~C~~G~Cg~C~~~v~~G~~~~~~~~~~~L~~~~~~~g~~LaC~~~~~s 88 (98)
T 1jq4_A 16 SLRFECR-SDEDVITAALRQN------IFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKT 88 (98)
T ss_dssp EEEEEEE-SCCTHHHHHHHHT------CCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTTCCSSC
T ss_pred EEEEEEC-CCCHHHHHHHHCC------CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECEECC
T ss_conf 9999979-5982999999869------99033606199999996984884606752101158443469979982699899
Q ss_pred CCCCEEEE
Q ss_conf 47851898
Q gi|254781044|r 107 IKGAIAVY 114 (259)
Q Consensus 107 ~~~~i~ie 114 (259)
.++|+
T Consensus 89 ---D~~Ie 93 (98)
T 1jq4_A 89 ---DLEIE 93 (98)
T ss_dssp ---CSEEE
T ss_pred ---CEEEE
T ss_conf ---99998
No 16
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=97.72 E-value=2.1e-05 Score=52.53 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=31.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE-CCC
Q ss_conf 689986426788116789999997328763884045677354430314-361
Q gi|254781044|r 45 MDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI-DGT 95 (259)
Q Consensus 45 ~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i-NG~ 95 (259)
..+++++ +|.|+||++... -+.+.++||.|.||+|.++| .|.
T Consensus 37 ~~t~~v~---~getiLdAa~~a------Gi~ip~~C~~G~CgtC~~~v~~G~ 79 (128)
T 1doi_A 37 YGSLEVN---EGEYILEAAEAQ------GYDWPFSCRAGACANCAAIVLEGD 79 (128)
T ss_dssp EEEEECC---TTSCHHHHHHHT------TCCCCCSSSSSSSSTTEEEEEESC
T ss_pred CEEEEEC---CCCCHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 1699979---498099999984------999776889982876858987873
No 17
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=97.71 E-value=2.6e-05 Score=51.96 Aligned_cols=57 Identities=26% Similarity=0.510 Sum_probs=38.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE-CCCC-----------------CCCCCCCHHCCCC
Q ss_conf 986426788116789999997328763884045677354430314-3612-----------------6632110000478
Q gi|254781044|r 48 YYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI-DGTN-----------------TLACVKDMKDIKG 109 (259)
Q Consensus 48 y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i-NG~~-----------------~LAC~t~~~~~~~ 109 (259)
+++++. .|.|+||++.+.. +...++||.|+||+|.+++ .|.. +|||+++...
T Consensus 13 ~~~~~~-~g~tlLda~~~~G------i~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~Cq~~~~~--- 82 (95)
T 1frr_A 13 FTLDVP-EGTTILDAAEEAG------YDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPES--- 82 (95)
T ss_dssp EEEEEC-TTCCHHHHHHHTT------CCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESS---
T ss_pred EEEEEC-CCCHHHHHHHHCC------CCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHCCEEEEEECEECC---
T ss_conf 999989-3970999999859------997648999670889889732538566344579768758908921198798---
Q ss_pred CEEEE
Q ss_conf 51898
Q gi|254781044|r 110 AIAVY 114 (259)
Q Consensus 110 ~i~ie 114 (259)
.++||
T Consensus 83 D~~ie 87 (95)
T 1frr_A 83 DLVIE 87 (95)
T ss_dssp CEEEE
T ss_pred CEEEE
T ss_conf 98998
No 18
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=97.67 E-value=4.9e-05 Score=50.21 Aligned_cols=41 Identities=32% Similarity=0.523 Sum_probs=31.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE-CCC
Q ss_conf 89986426788116789999997328763884045677354430314-361
Q gi|254781044|r 46 DTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI-DGT 95 (259)
Q Consensus 46 ~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i-NG~ 95 (259)
.+|+++ +|.|+||++... -+.+.++||.|+||+|.++| .|+
T Consensus 16 ~ti~v~---~~~tlLdaa~~~------Gi~ip~~C~~G~Cg~C~~~v~~G~ 57 (98)
T 1frd_A 16 TTIEID---EETTILDGAEEN------GIELPFSCHSGSCSSCVGKVVEGE 57 (98)
T ss_dssp EEEEEE---TTSCHHHHHHHT------TCCCCCSSSSSSSSTTEEEEEESC
T ss_pred EEEEEC---CCCHHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 999969---798399999985------999742638835489988976074
No 19
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=97.61 E-value=6.3e-05 Score=49.54 Aligned_cols=51 Identities=25% Similarity=0.468 Sum_probs=37.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCC---------------------CCCCCCCCH
Q ss_conf 998642678811678999999732876388404567735443031-4361---------------------266321100
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGT---------------------NTLACVKDM 104 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~---------------------~~LAC~t~~ 104 (259)
+++++ +|.|+||++.+- .+.+.++|+.|.||+|-++ +.|. .+|||++..
T Consensus 17 ~~~~~---~~~~il~a~~~~------gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~~~l~~~~~~~g~~L~Cq~~~ 87 (338)
T 1krh_A 17 FICIA---QGETLSDAAYRQ------QINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87 (338)
T ss_dssp EEEEC---TTCCHHHHHHHT------TCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEE
T ss_pred EEEEC---CCCHHHHHHHHC------CCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEE
T ss_conf 99979---789199999986------998637898905446679998892136776543334899898579689998764
Q ss_pred HC
Q ss_conf 00
Q gi|254781044|r 105 KD 106 (259)
Q Consensus 105 ~~ 106 (259)
.+
T Consensus 88 ~~ 89 (338)
T 1krh_A 88 TS 89 (338)
T ss_dssp SS
T ss_pred EC
T ss_conf 04
No 20
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=97.57 E-value=1.2e-06 Score=60.24 Aligned_cols=64 Identities=25% Similarity=0.575 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 6888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+...||.|+.|+.+||+....-....+... .+.... ++..... ..-..+|+.||.|+++||.+-
T Consensus 49 d~e~Ci~C~~C~~~CP~~~i~~~~~~~~~~---------~~~~~~--~~~~~~~-~Id~~rCifCG~CvevCPt~A 112 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIYVEPAENDPE---------NPVSAG--ERYAKVY-EINMLRCIFCGLCEEACPTGA 112 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEEEEEECCCSS---------SCSSSS--SCEEEEE-EEETTTCCCCCHHHHHCSSSC
T ss_pred CHHHCCHHHHHHHHCCCCCEEEECCCCCCC---------CCCCCC--CCCCEEE-EECCCCCCCCCCCCCCCCCCE
T ss_conf 312230330698867857538630455555---------565555--3355038-777264989998354389994
No 21
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum 3D7} SCOP: d.15.4.1
Probab=97.57 E-value=4.6e-05 Score=50.37 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCC
Q ss_conf 998642678811678999999732876388404567735443031-4361
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGT 95 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~ 95 (259)
+|+++ +|.|+||++.... +...++||.|+||+|.++ +.|.
T Consensus 15 ~~~~~---~g~tlLdaa~~~G------i~i~~~C~~G~Cg~C~~~v~~G~ 55 (98)
T 1iue_A 15 KIECN---EDEYILDASERQN------VELPYSCRGGSCSTCAAKLVEGE 55 (98)
T ss_dssp EEEEE---TTSCHHHHHHHTT------CCCCCSSCSSSSSTTEEEEEESC
T ss_pred EEEEC---CCCHHHHHHHHCC------CCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99989---6982999999859------99775798974588889964676
No 22
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=97.56 E-value=5.8e-05 Score=49.79 Aligned_cols=57 Identities=26% Similarity=0.489 Sum_probs=39.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE-CCC-----------------CCCCCCCCHHCCCCC
Q ss_conf 86426788116789999997328763884045677354430314-361-----------------266321100004785
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI-DGT-----------------NTLACVKDMKDIKGA 110 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i-NG~-----------------~~LAC~t~~~~~~~~ 110 (259)
++++. +|.|+||++.... +.+.++|+.|+||+|.++| .|. -+|||++.... .
T Consensus 13 ~~~~~-~~~tlL~aa~~~g------i~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~LaCq~~~~~---D 82 (94)
T 1awd_A 13 TIECP-EDTYILDAAEEAG------LDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTS---D 82 (94)
T ss_dssp EEECC-TTSCHHHHHHHTT------CCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS---C
T ss_pred EEEEC-CCCHHHHHHHHCC------CCCCCCCCCCCCCCCEEEEEECEECCCCCCCCCHHHHHCCEEEECCCEECC---C
T ss_conf 99979-6981999999859------998747999562889899987858667566799889849979977199897---9
Q ss_pred EEEEE
Q ss_conf 18986
Q gi|254781044|r 111 IAVYP 115 (259)
Q Consensus 111 i~ieP 115 (259)
++|+.
T Consensus 83 ~~I~~ 87 (94)
T 1awd_A 83 VTILT 87 (94)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99961
No 23
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.53 E-value=4.2e-05 Score=50.65 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=50.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC----CCCCCCCCCCHHCCCC--CEEEEECCC
Q ss_conf 99864267881167899999973287638840456773544303143----6126632110000478--518986489
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNID----GTNTLACVKDMKDIKG--AIAVYPLPH 118 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iN----G~~~LAC~t~~~~~~~--~i~iePl~~ 118 (259)
.++++..+++.|+|+.|+. + +--.-+.+|.+|.||+|+|.|| |+++-+|.+.+..+++ .+|||=|.+
T Consensus 11 ~~~~~~~~~~~~l~~~lr~---~--~l~gtk~gc~~g~cGaCtv~~~~~~~~~~v~sc~~~~~~~~g~~i~Tvegl~~ 83 (462)
T 2w3s_A 11 TRRVRIEDPTQSLLEWLRA---E--GLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAA 83 (462)
T ss_dssp EEEEECSCTTCBHHHHHHH---T--TCTTSCCSCSSSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGGGTSC
T ss_pred EEEEECCCCCCCHHHHHHH---C--CCCCCCCCCCCCCCCCEEEEECCCCCCCEEECHHHHHHHHCCCEEEECCCCCC
T ss_conf 9997469999759999986---7--79678877088888772999887889818881888999828978996176778
No 24
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=97.53 E-value=0.0001 Score=48.20 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCC
Q ss_conf 998642678811678999999732876388404567735443031-4361
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGT 95 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~ 95 (259)
+|+++ +|.|+||++.... +...++||.|.||+|.++ +.|.
T Consensus 15 ~~~~~---~g~tlLdaa~~~G------i~i~~~C~~G~CgtC~~~v~~G~ 55 (97)
T 1a70_A 15 EFQCP---DDVYILDAAEEEG------IDLPYSCRAGSCSSCAGKLKTGS 55 (97)
T ss_dssp EEEEE---TTSCHHHHHHHTT------CCCCCSSSSSCSSTTEEEEEESC
T ss_pred EEEEC---CCCHHHHHHHHCC------CCCCCCCCCEECCCCEEEEEECC
T ss_conf 99969---7980999999869------99764899848089978995655
No 25
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=97.33 E-value=0.00036 Score=44.83 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=6.7
Q ss_pred CHHHHHHHHHH
Q ss_conf 14788999885
Q gi|254781044|r 192 GPAILLQAYRW 202 (259)
Q Consensus 192 GP~~l~~a~r~ 202 (259)
||..|+++.+-
T Consensus 200 GP~~m~~~v~~ 210 (321)
T 2pia_A 200 GPQALMDTVRD 210 (321)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 86999999999
No 26
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=97.26 E-value=0.00024 Score=45.90 Aligned_cols=39 Identities=31% Similarity=0.506 Sum_probs=27.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE-ECCC
Q ss_conf 8642678811678999999732876388404567735443031-4361
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN-IDGT 95 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~-iNG~ 95 (259)
.+++. +|.++||++.. .. .+.|+||.|+||+|.++ +.|.
T Consensus 14 ~~~~~-~g~tiLda~~~---~g----~~p~~C~~G~CgtC~~~v~~G~ 53 (93)
T 1wri_A 14 TFDVE-PGERLIDIGSE---KA----DLPLSCQAGACSTCLGKIVSGT 53 (93)
T ss_dssp EEEEC-TTSCHHHHHHH---HS----CCCCSSSSSSSSTTEEEEEESC
T ss_pred EEEEC-CCCCHHHHHHH---CC----CCCCCCCCCCCCCCEEEECCCC
T ss_conf 99979-79919999986---79----9875689980688976861485
No 27
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=97.16 E-value=4.4e-05 Score=50.51 Aligned_cols=18 Identities=33% Similarity=0.894 Sum_probs=11.1
Q ss_pred HHHHHHHHCCCHHHCCCE
Q ss_conf 688888731313228200
Q gi|254781044|r 166 GLYECVMCACCSTSCPSY 183 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~ 183 (259)
+..+||.|+.|+.+||+.
T Consensus 31 d~~kC~~C~~Cv~~CP~~ 48 (421)
T 1hfe_L 31 DEAKCIGCDTCSQYCPTA 48 (421)
T ss_dssp CTTTCCCCCHHHHHCTTC
T ss_pred CHHHCCCCCHHHHHHCHH
T ss_conf 865786803598760654
No 28
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.04 E-value=2.7e-05 Score=51.80 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=32.8
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHH-HHHHCCCCCCCHHHHHHHHCCC--CCCCCCCCCCCHHHHCCCC
Q ss_conf 6888887313132282001022210114788999-8851688843138899962286--6527676647345518997
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQA-YRWLIDSRDEFQGERLDNLEDP--FRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a-~r~~~D~rD~~~~erl~~l~~~--~gi~~C~~C~~C~~vCPkg 240 (259)
+...||+||.|..+||-...... ..-+..+..+ ..| ...+.... .+..+.-. -.-+.|+.|+.|+++||.+
T Consensus 684 d~dkCigC~~C~~vCP~~AIr~~-~~~~~e~~~ap~~f--~~~~~k~~-~~~g~~~~IqVdp~dCtGCgvCv~vCP~~ 757 (1231)
T 2c42_A 684 VPENCIQCNQCAFVCPHSAILPV-LAKEEELVGAPANF--TALEAKGK-ELKGYKFRIQINTLDCMGCGNCADICPPK 757 (1231)
T ss_dssp CTTTCCCCCHHHHHCSSCCEEEE-EECGGGGTTCCTTC--CCEECCSG-GGTTCEEEEEECTTTCCCCCHHHHHCSSS
T ss_pred CHHHCCCCHHHHHHCCCCEEECC-CCCHHHHHCCCCCC--CCCCCCCC-CCCCCEEEEEECHHHCCCHHHHHHHCCCC
T ss_conf 61426761457864897478403-47867662574001--21001255-56787169997767686757898556996
No 29
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=96.97 E-value=3.2e-05 Score=51.36 Aligned_cols=56 Identities=20% Similarity=0.433 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 688888731313228200102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
+...||.||.|+.+||.-...-... +. ......+. ... ....|+.|+.|+++||.+
T Consensus 41 D~d~Ci~Cg~Cv~~CP~~~i~~~~~--~~----------~~~~~~~~----~~~---~~~~C~~Cg~C~~vCP~~ 96 (103)
T 1xer_A 41 DFDLCIADGSCINACPVNVFQWYDT--PG----------HPASEKKA----DPV---NEQACIFCMACVNVCPVA 96 (103)
T ss_dssp ETTTCCCCCHHHHHCTTCCCEEEEC--TT----------CSSCSEEE----ECT---TGGGCCCCCHHHHHCTTC
T ss_pred CHHHCCCCCHHHHHCCCCCCEEECC--CC----------CCCCCCEE----EEE---CHHHCCCCCHHHCCCCCC
T ss_conf 8799989691034677247070234--57----------66666505----887---043389999402305817
No 30
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=96.96 E-value=0.00056 Score=43.67 Aligned_cols=57 Identities=21% Similarity=0.533 Sum_probs=39.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEE-CCC-----------------------CCCCCCCC
Q ss_conf 86426788116789999997328763884045-677354430314-361-----------------------26632110
Q gi|254781044|r 49 YVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNI-DGT-----------------------NTLACVKD 103 (259)
Q Consensus 49 ~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~i-NG~-----------------------~~LAC~t~ 103 (259)
++++. .|.++||++.... +.+.++| +.|.||+|.++| +|. -+|||+++
T Consensus 18 ~ie~~-~G~tLl~aa~~~g------i~i~~~Cgg~g~CgtC~v~v~~G~~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ~~ 90 (111)
T 1i7h_A 18 VLEAN-SGETILDAALRNG------IEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQAR 90 (111)
T ss_dssp EEECC-TTCBHHHHHHHTT------CCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTCB
T ss_pred EEEEC-CCCCHHHHHHHCC------CCCCCCCCCCCEECCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECE
T ss_conf 99979-9980999999859------8986367897557206869804753378998678986506234799919864368
Q ss_pred HHCCCCCEEEE
Q ss_conf 00047851898
Q gi|254781044|r 104 MKDIKGAIAVY 114 (259)
Q Consensus 104 ~~~~~~~i~ie 114 (259)
+.. +.++|+
T Consensus 91 v~~--~d~~V~ 99 (111)
T 1i7h_A 91 VTD--EDLVVE 99 (111)
T ss_dssp CCS--SCEEEE
T ss_pred ECC--CCEEEE
T ss_conf 998--998998
No 31
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=96.89 E-value=0.00071 Score=43.03 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=42.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCEEEECC-------------------------CCCCCC
Q ss_conf 998642678811678999999732876388404567-735443031436-------------------------126632
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCRE-GICGSCGMNIDG-------------------------TNTLAC 100 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~-giCGsCa~~iNG-------------------------~~~LAC 100 (259)
+.++++. .|.|+|+++...+ +...++|.. |.||+|.+.|.. .-+|||
T Consensus 15 ~~~v~~~-~G~tLl~a~~~~g------i~i~~~Cgg~g~CgtC~v~v~~~~~~~l~~~~~~E~~~l~~~~~~~~~~RLaC 87 (103)
T 2wlb_A 15 EIMIEGN-EGDSILDLAHANN------IDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEETSRLGC 87 (103)
T ss_dssp EEEEEEC-TTCBHHHHHHHTT------CCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCTTEEEGG
T ss_pred EEEEEEC-CCCHHHHHHHHCC------CCCCCCCCCCCEECCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9999879-9982999999869------89874689986648817686466434489899889997507457999919871
Q ss_pred CCCHHCCCCCEEEE
Q ss_conf 11000047851898
Q gi|254781044|r 101 VKDMKDIKGAIAVY 114 (259)
Q Consensus 101 ~t~~~~~~~~i~ie 114 (259)
++.+.+--++++|+
T Consensus 88 Q~~v~~d~dg~~V~ 101 (103)
T 2wlb_A 88 QVLLRKDLDGIRVR 101 (103)
T ss_dssp GCBCCGGGTTEEEE
T ss_pred ECEECCCCCCEEEE
T ss_conf 58942467988996
No 32
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=96.80 E-value=0.0043 Score=38.15 Aligned_cols=77 Identities=16% Similarity=0.392 Sum_probs=48.1
Q ss_pred CCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEE-CC-------
Q ss_conf 860799999863688888873689986426788116789999997328763884045-677354430314-36-------
Q gi|254781044|r 24 EKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNI-DG------- 94 (259)
Q Consensus 24 ~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~i-NG------- 94 (259)
...|+++.+. ++ +++ ..++++. .|.|+|+++.... ++. ..+.| ..|.||+|.+.| +|
T Consensus 18 ~~~M~kIt~i--~~--dG~----~~~v~~~-~G~tLl~aa~~~g--i~~---i~~~CgG~g~CgtC~V~V~~g~~~~l~~ 83 (126)
T 3hui_A 18 GSHMAKINFV--DH--TGE----TRTVEVE-EGATVMEAAIRNA--IPG---VEAECGGACACATCHVYVDEAWREKVGG 83 (126)
T ss_dssp TCSEEEEEEE--CT--TSC----EEEEEEE-TTSBHHHHHHTTT--CTT---CCCTTSSSSCCSTTEEEECGGGHHHHCC
T ss_pred CCCCEEEEEE--CC--CCC----EEEEEEC-CCCHHHHHHHHCC--CCC---CCCCCCCCCEECCCEEEEECCCCCCCCC
T ss_conf 8995289998--78--998----8999969-9826999999849--975---3645798876687289981675344799
Q ss_pred -----------------CCCCCCCCCHHCCCCCEEEE
Q ss_conf -----------------12663211000047851898
Q gi|254781044|r 95 -----------------TNTLACVKDMKDIKGAIAVY 114 (259)
Q Consensus 95 -----------------~~~LAC~t~~~~~~~~i~ie 114 (259)
..+|||++.+.+--++++|+
T Consensus 84 ~~~~E~~~L~~~~~~~~~sRLaCQi~v~~dldgl~V~ 120 (126)
T 3hui_A 84 PSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVT 120 (126)
T ss_dssp CCHHHHHHHTTSSSCCTTEEEGGGCBCCGGGTTEEEE
T ss_pred CCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEE
T ss_conf 9989999872443689993876585870478987996
No 33
>3nrz_A Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine, substrate orientation, hydro oxidoreductase; HET: FAD MTE HPA; 1.80A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3eub_A*
Probab=96.79 E-value=0.00037 Score=44.81 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=36.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 426788116789999997328763884045677354430314361266321100
Q gi|254781044|r 51 DLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDM 104 (259)
Q Consensus 51 ~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~ 104 (259)
++ ++++++|+.|+.- . +--.-+.+|.+|.||+|.|.|||++..+|....
T Consensus 18 ~~-~p~~~Ll~~LR~~---l-gltGtK~GC~~G~CGACTVlvdg~~~~s~~~~~ 66 (164)
T 3nrz_A 18 NA-DPETTLLAYLRRK---L-GLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIH 66 (164)
T ss_dssp TC-CTTCBHHHHHHHT---S-CCTTSCCSCSSSSSCTTEEEEEEECTTTCSEEE
T ss_pred CC-CCCCCHHHHHHHH---C-CCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
T ss_conf 59-9998799999873---5-997667788988878787887785665542003
No 34
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=96.63 E-value=0.0015 Score=40.93 Aligned_cols=65 Identities=22% Similarity=0.468 Sum_probs=44.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEECCC--------------------------CCCC
Q ss_conf 9986426788116789999997328763884045-677354430314361--------------------------2663
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNIDGT--------------------------NTLA 99 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iNG~--------------------------~~LA 99 (259)
..++++. .|.|+|+++..-. ++ .+.+.| ..|.||+|.+.|... -|||
T Consensus 12 ~~~v~~~-~G~tLl~~~~~~~--i~---~i~~~CgG~g~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLa 85 (105)
T 1b9r_A 12 EYAVDAQ-DGQSLMEVATQNG--VP---GIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAGTRLS 85 (105)
T ss_dssp CEEEECC-TTCCTTHHHHHHT--CC---CCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTTBSCG
T ss_pred EEEEEEC-CCCHHHHHHHHCC--CC---CCCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 8999868-9984999999849--98---7565689975677618893356433379889789999742304688995966
Q ss_pred CCCCHHCCCCCEEEE-ECC
Q ss_conf 211000047851898-648
Q gi|254781044|r 100 CVKDMKDIKGAIAVY-PLP 117 (259)
Q Consensus 100 C~t~~~~~~~~i~ie-Pl~ 117 (259)
||+.+.+--++++|+ |++
T Consensus 86 CQi~v~~~ldgl~V~vP~~ 104 (105)
T 1b9r_A 86 CQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp GGCCCCTTSTTEEEECCSC
T ss_pred EECEEECCCCCEEEEECCC
T ss_conf 0269635679889992599
No 35
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 2o01_C*
Probab=96.60 E-value=0.00011 Score=47.95 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=31.7
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+||.||.|+.+||.....-. ..+...... . ....+ ...|..||.|+++||.+.
T Consensus 8 d~Ci~C~~C~~~Cp~~~i~~~---------------~~~~~~~~~-~-~~~~~---~~~C~~Cg~C~~~CP~~A 61 (80)
T 1jb0_C 8 DTCIGCTQCVRACPTDVLEMV---------------PWDGCKAGQ-I-ASSPR---TEDCVGCKRCETACPTDF 61 (80)
T ss_dssp TTCCCCCHHHHHCTTCCCEEE---------------ECSSSTTSE-E-EECTT---GGGCCCCCHHHHHCCSSS
T ss_pred CCCCCCCCCCCHHCCCCCEEE---------------CCCCCCCCC-C-CEECC---HHHCCCCCCCCCCCCCCC
T ss_conf 889781111013481761855---------------265554554-3-10335---768999995407599998
No 36
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans}
Probab=96.56 E-value=0.0018 Score=40.55 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=42.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEEC-C------------------------CCCCCC
Q ss_conf 9986426788116789999997328763884045-6773544303143-6------------------------126632
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNID-G------------------------TNTLAC 100 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iN-G------------------------~~~LAC 100 (259)
++++++. .|.|+|+++.... ++. ..+.| ..|.||+|.+.|. | ..+|||
T Consensus 12 ~~~v~~~-~G~tLl~a~~~~g--i~~---i~~~CgG~g~C~tC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~RLaC 85 (104)
T 3lxf_A 12 RTEIQAE-PGLSLMEALRDAG--IDE---LLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHSRLSC 85 (104)
T ss_dssp EEEEECC-TTSBHHHHHHHTT--CTT---CCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTEEEGG
T ss_pred EEEEEEC-CCCHHHHHHHHCC--CCC---CCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9999869-9875999998759--987---661368986687628997157401079899789998725446899908850
Q ss_pred CCCHHCCCCCEEEE
Q ss_conf 11000047851898
Q gi|254781044|r 101 VKDMKDIKGAIAVY 114 (259)
Q Consensus 101 ~t~~~~~~~~i~ie 114 (259)
|+.+.+--++++|+
T Consensus 86 Q~~v~~dldgl~V~ 99 (104)
T 3lxf_A 86 QITINDKLEGLEVE 99 (104)
T ss_dssp GCBCCGGGTTCEEE
T ss_pred ECEEECCCCCEEEE
T ss_conf 68843357967998
No 37
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=96.50 E-value=0.00041 Score=44.52 Aligned_cols=45 Identities=27% Similarity=0.700 Sum_probs=29.6
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC------CCHHHHCCCC
Q ss_conf 888873131322820010222101147889998851688843138899962286652767664------7345518997
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTI------MNCTQSCPKG 240 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C------~~C~~vCPkg 240 (259)
.+||.||.|+.+||+-....+ +. ++. .+. ..|+.| |.|.++||.+
T Consensus 6 d~Ci~Cg~C~~~CP~~AI~~~---~~-------~~~---------------i~~---~~C~~C~~~~~~G~C~~vCP~~ 56 (82)
T 2fgo_A 6 DDCINCDVCEPECPNGAISQG---EE-------IYV---------------IDP---NLCTECVGHYDEPQCQQVCPVD 56 (82)
T ss_dssp TTCCCCCTTGGGCTTCCEEEC---SS-------SEE---------------ECT---TTCCTTTTTCSSCHHHHHCTTC
T ss_pred CCCCCCCHHHHHCCHHHHHHC---CC-------CCC---------------CCC---CCCCCCCCCCCCCCCHHHCCCC
T ss_conf 508593678888363214440---35-------420---------------455---6286998989989814043899
No 38
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=96.37 E-value=0.0019 Score=40.40 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=42.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEECC-------------------CCCCCCCCCHHC
Q ss_conf 9986426788116789999997328763884045-67735443031436-------------------126632110000
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNIDG-------------------TNTLACVKDMKD 106 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iNG-------------------~~~LAC~t~~~~ 106 (259)
+..+++. .|.|+|++|..-. +. ...++| ..|.||+|-+.|.. ..+|||+..+..
T Consensus 11 ~~~i~~~-~G~tLl~al~~~g--i~---~i~~~CgG~~~C~tC~V~v~~g~~~~~~~~E~~~l~~~~~~sRLaCQi~l~~ 84 (93)
T 1l5p_A 11 KKQLKFE-DDQTLFTVLTEAG--LM---SADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAITLSG 84 (93)
T ss_dssp EEEEECC-TTEEHHHHHHTTT--SS---CCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGGGCEECG
T ss_pred EEEEEEC-CCHHHHHHHHHCC--CC---CCCCCCCCCEEECEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 9999957-9728999998728--88---8875646750866589998878756998368776630689909999759474
Q ss_pred CCCCEEEE
Q ss_conf 47851898
Q gi|254781044|r 107 IKGAIAVY 114 (259)
Q Consensus 107 ~~~~i~ie 114 (259)
--++++|+
T Consensus 85 ~ldg~~v~ 92 (93)
T 1l5p_A 85 ENDGAVFE 92 (93)
T ss_dssp GGTTCEEE
T ss_pred CCCCEEEE
T ss_conf 33987997
No 39
>1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=96.27 E-value=9.2e-06 Score=54.74 Aligned_cols=62 Identities=21% Similarity=0.517 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC---------CHH
Q ss_conf 46688888731313228200102221011478899988516888431388999622866527676647---------345
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIM---------NCT 234 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~---------~C~ 234 (259)
..+...||.|+.|+.+||.-. -.| . .. ..-+..|+.|. +|+
T Consensus 127 ~id~~~CiGC~~C~~aCP~~a---i~~------------~--~~-------------~~~~~KC~~C~~r~~~G~~PACv 176 (294)
T 1kqf_B 127 DFQSENCIGCGYCIAGCPFNI---PRL------------N--KE-------------DNRVYKCTLCVDRVSVGQEPACV 176 (294)
T ss_dssp EECGGGCCCCCHHHHHCTTCC---CEE------------E--TT-------------TTEEECCCTTHHHHTTTCCCHHH
T ss_pred EECCCCCCCHHHHHHCCCCCC---CEE------------E--CC-------------CCCEEECCCCHHHHHCCCCCCHH
T ss_conf 715242576166875699998---464------------1--67-------------79665377267777379986227
Q ss_pred HHCCCCC----CHHHHHHHHHHHHH
Q ss_conf 5189978----88999999999998
Q gi|254781044|r 235 QSCPKGL----NPAKAIAKIKMMLL 255 (259)
Q Consensus 235 ~vCPkgI----~~~~~I~~LRr~~v 255 (259)
++||.+- +..+.+...++++.
T Consensus 177 ~aCPt~Ai~fG~~~e~~~~a~~rv~ 201 (294)
T 1kqf_B 177 KTCPTGAIHFGTKKEMLELAEQRVA 201 (294)
T ss_dssp HHCTTSCEEEEEHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 7501277799558997889999999
No 40
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=96.26 E-value=0.00073 Score=42.95 Aligned_cols=46 Identities=28% Similarity=0.642 Sum_probs=30.8
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+|+.||.|+.+||.-....+ +.+ ..+ + -..|+.||.|..+||.+-
T Consensus 6 d~C~~Cg~C~~~CP~~ai~~~----------------~~~--------~~i-~---~~~C~~Cg~C~~~CP~~A 51 (55)
T 2fdn_A 6 EACISCGACEPECPVNAISSG----------------DDR--------YVI-D---ADTCIDCGACAGVCPVDA 51 (55)
T ss_dssp TTCCCCCTTGGGCTTCCEECC----------------SSS--------CEE-C---TTTCCCCCHHHHTCTTCC
T ss_pred CCCCCHHHHHHHCCCCCEECC----------------CCE--------EEE-C---HHHCCCCCCCHHHCCCCC
T ss_conf 689897899977772248857----------------997--------997-6---779929998622577657
No 41
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} PDB: 1blu_A 3exy_A
Probab=96.25 E-value=0.0007 Score=43.07 Aligned_cols=46 Identities=26% Similarity=0.733 Sum_probs=29.5
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC------CCHHHHCCCCC
Q ss_conf 888873131322820010222101147889998851688843138899962286652767664------73455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTI------MNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C------~~C~~vCPkgI 241 (259)
.+||.||.|+.+||.-..... +. .. ..+. -.|+.| |.|.++||.+-
T Consensus 6 dkCi~Cg~C~~~CP~~AI~~~----------------~~--~~-------~~~~---~~Ci~C~~~~~~G~C~~vCP~~A 57 (82)
T 3eun_A 6 DECINCDVCEPECPNGAISQG----------------DE--TY-------VIEP---SLCTECVGHYETSQCVEVCPVDA 57 (82)
T ss_dssp TTCCCCCTTGGGCTTCCEEEC----------------SS--SE-------EECG---GGCCTTTTTCSSCHHHHHCTTCC
T ss_pred CCCCCCCHHHHHCCHHHEECC----------------CC--CE-------EECC---CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 679494489988265321115----------------66--32-------7648---70828889999888517489997
No 42
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=96.22 E-value=0.0014 Score=41.21 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=52.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE------CCC----CCCCCCCCHHCCCC--CEEEEE
Q ss_conf 986426788116789999997328763884045677354430314------361----26632110000478--518986
Q gi|254781044|r 48 YYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNI------DGT----NTLACVKDMKDIKG--AIAVYP 115 (259)
Q Consensus 48 y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~i------NG~----~~LAC~t~~~~~~~--~i~ieP 115 (259)
++++--++++|+|+-|+. +..+-+| -.+|.+|=||+|.+.| ||+ ++=||.+.+-.+.+ .+|||=
T Consensus 15 ~~~~~~~p~~tLl~~LR~-~~~ltGt---K~gC~eG~CGaCtV~v~~~~~~~~~~~~~~vNsCl~~l~~~~g~~i~TvEg 90 (1332)
T 1v97_A 15 VVEKNADPETTLLAYLRR-KLGLRGT---KLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEG 90 (1332)
T ss_dssp EEETTCCTTCBHHHHHHH-TSCCTTS---CCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEECGGG
T ss_pred EEECCCCCCCCHHHHHHH-CCCCCCC---CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCEEEEECC
T ss_conf 985899998659999851-8998512---354478898466999733707899378998666986998757988995488
Q ss_pred CCC-----CEEEEEEEE
Q ss_conf 489-----804411245
Q gi|254781044|r 116 LPH-----MSVIKDLVV 127 (259)
Q Consensus 116 l~~-----~pVikDLvV 127 (259)
|.+ .||.+-|+-
T Consensus 91 lg~~~~~lHpvQ~~l~~ 107 (1332)
T 1v97_A 91 IGSTKTRLHPVQERIAK 107 (1332)
T ss_dssp TCCSSSCCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHH
T ss_conf 88899997899999986
No 43
>2v2k_A Ferredoxin; iron, 3Fe-4S, 4Fe-4S, transport, iron-sulfur, mycobacterium tuberculosis, Fe-S cluster, metal-binding, electron transfer; 1.6A {Mycobacterium smegmatis}
Probab=96.17 E-value=0.0015 Score=41.09 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=30.4
Q ss_pred HHHHHH--CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888873--13132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMC--ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~C--G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+|+.| |.|+.+||.-....+ .. . ...+. ..|+.||.|..+||.+-
T Consensus 6 ~~C~~C~~~~C~~~CP~~ai~~~-----------------~~-~-------~~id~---~~Ci~Cg~C~~~CP~~A 53 (105)
T 2v2k_A 6 EPCVDVKDKACIEECPVDCIYEG-----------------AR-M-------LYIHP---DECVDCGACEPVCPVEA 53 (105)
T ss_dssp GGGTTTCCCHHHHHCTTCCEEEC-----------------SS-C-------EEECT---TTCCCCCCSGGGCTTCC
T ss_pred CCCCCCCCCCHHHHCCCCCEECC-----------------CC-E-------EEEEC---CCCCCCCCCCCCCCCCC
T ss_conf 76789899337776567754767-----------------99-8-------99866---41879261634188145
No 44
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron- sulfur clusters, reduction potential; 1.65A {Escherichia coli k-12}
Probab=96.14 E-value=0.00064 Score=43.29 Aligned_cols=45 Identities=22% Similarity=0.667 Sum_probs=29.1
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC------CCHHHHCCCC
Q ss_conf 888873131322820010222101147889998851688843138899962286652767664------7345518997
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTI------MNCTQSCPKG 240 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C------~~C~~vCPkg 240 (259)
.+||.||.|..+||+-.... ++. .+. + +. -.|+.| |.|.++||.+
T Consensus 6 d~Ci~Cg~C~~~CP~~ai~~----~~~------~~~--------------I-d~---~~C~~C~~~~~~g~Cv~~CP~~ 56 (85)
T 2zvs_A 6 KKCINCDMCEPECPNEAISM----GDH------IYE--------------I-NS---DKCTECVGHYETPTCQKVCPIP 56 (85)
T ss_dssp TTCCCCCTTTTTCTTCCEEC----CSS------SCE--------------E-CG---GGCCTTTTTCSSCHHHHHCSSC
T ss_pred CCCCCCCCCHHHCCCCCCCC----CCC------CEE--------------E-CC---HHCCCCCCCCCCCCCHHHCCCC
T ss_conf 87979783022573567012----786------469--------------8-85---3446998959997444128999
No 45
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=96.08 E-value=0.0016 Score=40.86 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=30.6
Q ss_pred HHHHHH--CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888873--13132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMC--ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~C--G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..||.| |.|+.+||+-... .++. . ...+. -.|+.||.|..+||.+-
T Consensus 6 ~~C~~C~~~~C~~~CP~~AI~----~~~~--------------~-------~~Id~---~~Ci~Cg~C~~~CP~~A 53 (106)
T 7fd1_A 6 DNCIKCKYTDCVEVCPVDCFY----EGPN--------------F-------LVIHP---DECIDCALCEPECPAQA 53 (106)
T ss_dssp GGGTTTCCCHHHHHCTTCCEE----ECSS--------------C-------EEECT---TTCCCCCTTGGGCTTCC
T ss_pred CCCCCCCCCCHHHHCCCCCEE----CCCC--------------E-------EEECH---HHCCCCCCCHHHHHHCC
T ss_conf 247998996524458966657----4776--------------7-------99728---88888472568870577
No 46
>3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri}
Probab=96.06 E-value=0.005 Score=37.76 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 54466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 162 QKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 162 ~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+....+.+|+.|+.|.-+||...- -+.++..+.. +|-. -+..+ .+.|..|+.|..+||++|
T Consensus 409 e~~~~a~~c~~~~~~~~vcp~~~~------i~~a~~~a~~-----gd~~---~l~~~-----~~~ci~cg~ce~~cpk~i 469 (807)
T 3cf4_A 409 ELVNMVAKCADCGACLLACPEEID------IPEAMGFAKK-----GDFS---YFEEI-----HDTCIGCRRCEQVCKKEI 469 (807)
T ss_dssp HHHHHHHHCCCCCHHHHHCTTCCC------HHHHHHHHHT-----TCTH---HHHHH-----HHHCCCCCHHHHHCTTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCC------HHHHHHHHHH-----CCHH---HHHHH-----HHHCCCCCCCCCCCCCCC
T ss_conf 899999986532443235776555------6889888750-----5436---55444-----332023220011354456
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 889999999999986
Q gi|254781044|r 242 NPAKAIAKIKMMLLD 256 (259)
Q Consensus 242 ~~~~~I~~LRr~~v~ 256 (259)
++.+.|....+..+.
T Consensus 470 pi~~vi~g~s~e~i~ 484 (807)
T 3cf4_A 470 PILNVIEKIAQKQIA 484 (807)
T ss_dssp CHHHHHHHHTHHHHH
T ss_pred CCHHHEECCHHHHHH
T ss_conf 510210010177776
No 47
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=96.05 E-value=0.0012 Score=41.70 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=30.5
Q ss_pred HHHHHH--CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888873--13132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMC--ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~C--G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+||.| |.|+.+||+-.... ++ +. ...+. ..|+.||.|..+||.+-
T Consensus 6 dkC~~C~~g~C~~~CP~~AI~~----~~--------------~~-------~~id~---~~C~~Cg~C~~~CP~~A 53 (77)
T 1bc6_A 6 EPCIGTKDASCVEVCPVDCIHE----GE--------------DQ-------YYIDP---DVCIDCGACEAVCPVSA 53 (77)
T ss_dssp STTTTCCCCSSTTTCTTCCEEE----CS--------------SS-------EEECT---TTCCSCCSHHHHSGGGS
T ss_pred CCCCCCCCCCHHHHCCCCCEEE----EC--------------CE-------EEECC---CCCCCCCCCHHHCCCCC
T ss_conf 6678927925387789682697----19--------------99-------99831---15928210334487227
No 48
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=95.98 E-value=0.0021 Score=40.08 Aligned_cols=46 Identities=24% Similarity=0.604 Sum_probs=30.3
Q ss_pred HHHHHH--CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 888873--13132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMC--ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~C--G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+|+.| |.|+.+||+-....+ + +.. .+ +. -.|+.|+.|..+||.+-
T Consensus 6 e~C~~C~~~~C~~~CP~~AI~~~-----------------~-~~~------~i-~~---~~C~gCg~C~~~CP~~A 53 (78)
T 1h98_A 6 EPCIGVKDQSCVEVCPVECIYDG-----------------G-DQF------YI-HP---EECIDCGACVPACPVNA 53 (78)
T ss_dssp GGGTTTCCCHHHHHCTTCCEEEC-----------------S-SSE------EE-CT---TTCCCCCTHHHHCTTCC
T ss_pred CCCCCCCCCCHHHHCCCCCEECC-----------------C-CEE------EE-EC---CCCCCCCCHHHHCCCCC
T ss_conf 00699029364765898875755-----------------9-989------98-45---70864230134598036
No 49
>1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=95.96 E-value=0.0026 Score=39.57 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=12.9
Q ss_pred CCCCCCCHHHHCCCCCC
Q ss_conf 67664734551899788
Q gi|254781044|r 226 RCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 226 ~C~~C~~C~~vCPkgI~ 242 (259)
.|+.|+.|..+||-++.
T Consensus 132 ~CiGC~~C~~aCP~~ai 148 (294)
T 1kqf_B 132 NCIGCGYCIAGCPFNIP 148 (294)
T ss_dssp GCCCCCHHHHHCTTCCC
T ss_pred CCCCHHHHHHCCCCCCC
T ss_conf 25761668756999984
No 50
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=95.95 E-value=0.0068 Score=36.94 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=42.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEEC-C-------------------------CCCCC
Q ss_conf 9986426788116789999997328763884045-6773544303143-6-------------------------12663
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNID-G-------------------------TNTLA 99 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iN-G-------------------------~~~LA 99 (259)
..++++. .|.|+|+++.... ++. ..+.| ..|.||+|.+.|. | ..|||
T Consensus 12 ~~~i~~~-~G~tLl~a~~~~g--i~~---i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~~sRLa 85 (106)
T 1uwm_A 12 RHEVEAK-PGLTVMEAARDNG--VPG---IDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPATSRLT 85 (106)
T ss_dssp EEEEECC-TTSBHHHHHHTTT--CTT---CCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTTEEEG
T ss_pred EEEEEEC-CCCHHHHHHHHCC--CCC---CCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
T ss_conf 9999959-9867999999849--975---472468851368658997677444489997579987623234487987987
Q ss_pred CCCCHHCCCCCEEEE
Q ss_conf 211000047851898
Q gi|254781044|r 100 CVKDMKDIKGAIAVY 114 (259)
Q Consensus 100 C~t~~~~~~~~i~ie 114 (259)
|++.+.+--++++|+
T Consensus 86 CQ~~v~~~l~gl~V~ 100 (106)
T 1uwm_A 86 CQIKVTSLLDGLVVH 100 (106)
T ss_dssp GGCBCCGGGTTEEEE
T ss_pred EECEECCCCCCEEEE
T ss_conf 838940667888997
No 51
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica K172} SCOP: d.58.1.1
Probab=95.94 E-value=0.0011 Score=41.90 Aligned_cols=45 Identities=29% Similarity=0.734 Sum_probs=29.2
Q ss_pred HHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC------CCHHHHCCCC
Q ss_conf 888873131322820010222101147889998851688843138899962286652767664------7345518997
Q gi|254781044|r 168 YECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTI------MNCTQSCPKG 240 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C------~~C~~vCPkg 240 (259)
.+||.||.|+.+||.-... +. +.+ ...+. -.|+.| |.|.++||.+
T Consensus 6 d~Ci~Cg~C~~~CP~~AI~----~~------------~~~---------~~id~---~kC~~C~~~~~~g~C~~vCP~~ 56 (80)
T 1rgv_A 6 DDCTACDACVEECPNEAIT----PG------------DPI---------YVIDP---TKCSECVGAFDEPQCRLVCPAD 56 (80)
T ss_dssp SCCCCCCTTTTTCTTCCEE----CC------------SSS---------CEECT---TTCCTTTTTCSSCHHHHHCSSC
T ss_pred CCCCCCCHHHHHCCHHHHH----HC------------CCC---------CCCCC---HHCCCCCCCCCCCCCHHHCCCC
T ss_conf 7097844789878442022----23------------453---------43660---0088988869979615315758
No 52
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=95.91 E-value=0.0095 Score=36.04 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEEC-C-------------------------CCCCC
Q ss_conf 9986426788116789999997328763884045-6773544303143-6-------------------------12663
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNID-G-------------------------TNTLA 99 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iN-G-------------------------~~~LA 99 (259)
++++++. .|.|+|+++.... +. ...+.| ..|.||+|.+.|. | ..|||
T Consensus 12 ~~~i~~~-~G~tLl~a~~~~g--i~---~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLa 85 (106)
T 1xlq_A 12 RRELDVA-DGVSLMQAAVSNG--IY---DIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPNSRLC 85 (106)
T ss_dssp EEEEECC-TTCBHHHHHHHTT--CT---TSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTTEEEG
T ss_pred EEEEEEC-CCCHHHHHHHHCC--CC---CCCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9999959-9845999999749--87---7675416753317789998567412279998789998741003799898988
Q ss_pred CCCCHHCCCCCEEEE
Q ss_conf 211000047851898
Q gi|254781044|r 100 CVKDMKDIKGAIAVY 114 (259)
Q Consensus 100 C~t~~~~~~~~i~ie 114 (259)
|++.+.+--++++|+
T Consensus 86 CQ~~v~~~ldgl~V~ 100 (106)
T 1xlq_A 86 CQIIMTPELDGIVVD 100 (106)
T ss_dssp GGCBCCGGGTTEEEE
T ss_pred EEEEEECCCCCEEEE
T ss_conf 556933557988997
No 53
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.86 E-value=0.00061 Score=43.42 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCHHHCC--CEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 6888887313132282--0010222101147889998851688843138899962286652767664734551899
Q gi|254781044|r 166 GLYECVMCACCSTSCP--SYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK 239 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP--~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk 239 (259)
+...||.||.|+-+|- .|++= .| |+.- ++. +.++ .|+.|+.|..|||.
T Consensus 949 d~~~Ci~Cg~C~~~C~d~~yqAi--------------~~--~~~~-----~~~-~~~~----~C~GC~lC~~vCPv 998 (1025)
T 1gte_A 949 DEEMCINCGKCYMTCNDSGYQAI--------------QF--DPET-----HLP-TVTD----TCTGCTLCLSVCPI 998 (1025)
T ss_dssp CTTTCCCCCHHHHHHHHHSCSCE--------------EE--CTTT-----CCE-EECT----TCCCCCHHHHHCSS
T ss_pred CHHHCCCCCCEEEECCCCCCCEE--------------EE--CCCC-----CCC-CCCC----CCCCCCCHHHHCCC
T ss_conf 87778899873644078981117--------------96--7986-----556-6677----58875874231897
No 54
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=95.75 E-value=0.00087 Score=42.49 Aligned_cols=50 Identities=26% Similarity=0.599 Sum_probs=27.6
Q ss_pred HHHHHHH-----CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 8888873-----13132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 167 LYECVMC-----ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 167 ~~~CI~C-----G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
..+|+.| |.|+.+||.-... + |+.... ....+. -.|..|+.|+.+||.+-
T Consensus 6 ~~kC~gC~~~~~~~C~~~CP~~~i~----~-------------~~~~~~-----~~~~d~---~~C~~C~~Cv~~CP~~A 60 (166)
T 3gyx_B 6 PSKCDGCKGGEKTACMYICPNDLMI----L-------------DPEEMK-----AFNQEP---EACWECYSCIKICPQGA 60 (166)
T ss_dssp TTTCCCCCSSSCCHHHHHCTTSCEE----E-------------ETTTTE-----EEESCG---GGCCCCCHHHHHCSSCC
T ss_pred HHHCCCCCCCCCCCCHHHCCCCCEE----E-------------CCCCCE-----EEEEEH---HHCCCCCCCHHHCCHHH
T ss_conf 7886889899988234457777889----7-------------078887-----999747---88988262522509666
No 55
>1e6e_B Adrenodoxin, ADX; flavoenzyme, electron transferase, oxidoreductase, [2Fe- 2S]ferredoxin, electron transport, complex; HET: FAD; 2.3A {Bos taurus} SCOP: d.15.4.1 PDB: 1l6u_A 1l6v_A 1cje_A
Probab=95.73 E-value=0.016 Score=34.65 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=40.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEEC-C------------------------CCCCCC
Q ss_conf 9986426788116789999997328763884045-6773544303143-6------------------------126632
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNID-G------------------------TNTLAC 100 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iN-G------------------------~~~LAC 100 (259)
.+++++. .|.|+|+++..- .++ +-+-..| ..|.||+|-+.|. | ..+|||
T Consensus 18 ~~~v~~~-~G~tLl~aa~~~--gv~--i~~~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~sRLaC 92 (128)
T 1e6e_B 18 TLTTKGK-IGDSLLDVVVQN--NLD--IDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLTDRSRLGC 92 (128)
T ss_dssp EEEEEEC-TTCBHHHHHHHT--TCC--CTTCSTTCSSSSCSTTEEECCHHHHTTSCCCCHHHHHHHTTCSSCCTTEEEGG
T ss_pred EEEEEEC-CCCHHHHHHHHC--CCC--CCCCCCCCCEEEECCEEEEECCCHHHHCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 8999718-976399999975--998--67666788702618208996652353269999799999852014999925650
Q ss_pred CCCHHCCCCCEEEE
Q ss_conf 11000047851898
Q gi|254781044|r 101 VKDMKDIKGAIAVY 114 (259)
Q Consensus 101 ~t~~~~~~~~i~ie 114 (259)
++.+.+--++++|+
T Consensus 93 Qi~l~~~ldgl~V~ 106 (128)
T 1e6e_B 93 QICLTKAMDNMTVR 106 (128)
T ss_dssp GCBCCGGGTTEEEE
T ss_pred CCEEECCCCCEEEE
T ss_conf 28966178998998
No 56
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron transfer, 2Fe-2S, electron transport, iron, iron-sulfur, metal-binding; HET: RUA; 1.5A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 2jqr_B* 3na0_C*
Probab=95.60 E-value=0.022 Score=33.76 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=40.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEEC-C------------------------CCCCCC
Q ss_conf 9986426788116789999997328763884045-6773544303143-6------------------------126632
Q gi|254781044|r 47 TYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSC-REGICGSCGMNID-G------------------------TNTLAC 100 (259)
Q Consensus 47 ~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sC-r~giCGsCa~~iN-G------------------------~~~LAC 100 (259)
.++++.. .|.|+|+++..- .++ +-+...| ..+.||+|.+.|. | ..||||
T Consensus 18 ~~~i~~~-~G~tLl~~a~~~--gi~--i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLaC 92 (108)
T 2bt6_A 18 TLTTKGK-IGDSLLDVVVQN--NLD--IDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLTDRSRLGC 92 (108)
T ss_dssp EEEEEEE-TTCBHHHHHHHT--TCC--CTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCCTTEEEGG
T ss_pred EEEEEEC-CCCHHHHHHHHC--CCC--CCCCCCCCCCCEECCEEEEECCCHHHHCCCCCHHHHHHHHCCCCCCCCCEEEE
T ss_conf 9999838-983399999985--999--78565699976477119997752353369999899998724248999979451
Q ss_pred CCCHHCCCCCEEEE
Q ss_conf 11000047851898
Q gi|254781044|r 101 VKDMKDIKGAIAVY 114 (259)
Q Consensus 101 ~t~~~~~~~~i~ie 114 (259)
|+.+.+--++++|+
T Consensus 93 Qi~l~~~ldgl~V~ 106 (108)
T 2bt6_A 93 QICLTKAMDNMTVR 106 (108)
T ss_dssp GCBCCGGGTTEEEE
T ss_pred ECEEECCCCCEEEE
T ss_conf 48925278998996
No 57
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=95.49 E-value=0.0028 Score=39.34 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCHHHCCC
Q ss_conf 668888873131322820
Q gi|254781044|r 165 DGLYECVMCACCSTSCPS 182 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~ 182 (259)
.+...||.|+.|..+||.
T Consensus 94 iD~~kCIGC~~Cv~ACPy 111 (274)
T 1ti6_B 94 IDPEKAKGKKELLDTCPY 111 (274)
T ss_dssp ECTTTTTTCGGGGGGCSS
T ss_pred EECCCCCCCHHHHHCCCC
T ss_conf 702514651144431987
No 58
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=95.47 E-value=0.0016 Score=40.81 Aligned_cols=48 Identities=23% Similarity=0.502 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCHHHCCCE-EECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 688888731313228200-102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 166 GLYECVMCACCSTSCPSY-WWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~-~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
+...||.||.|+.+||.. ..+.+.+ . ..+.++ ..|..|+.|..+||.+
T Consensus 6 D~~~C~gCg~C~~~cP~~~~~~~~g~-------------------~-----~~~~~~---~~c~~c~~c~~~CP~~ 54 (60)
T 1rof_A 6 DADACIGCGVCENLCPDVFQLGDDGK-------------------A-----KVLQPE---TDLPCAKDAADSCPTG 54 (60)
T ss_dssp CTTTCCSCCSSTTTCTTTBCCCSSSC-------------------C-----CBSCSS---CCSTTHHHHHHHCTTC
T ss_pred EHHHCCCCCHHHHCCCCEEEEECCCC-------------------E-----EEECCH---HHCCCCCEEECCCCCC
T ss_conf 68999291802051890469904786-------------------4-----993695---8893508020957848
No 59
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP}
Probab=95.24 E-value=0.0024 Score=39.69 Aligned_cols=17 Identities=24% Similarity=0.724 Sum_probs=11.5
Q ss_pred CCCCCC---------CCHHHHCCCCC
Q ss_conf 767664---------73455189978
Q gi|254781044|r 225 YRCHTI---------MNCTQSCPKGL 241 (259)
Q Consensus 225 ~~C~~C---------~~C~~vCPkgI 241 (259)
..|+.| .+|+++||.+.
T Consensus 209 ~KC~~C~~r~~~G~~paCv~~Cp~~A 234 (352)
T 2ivf_B 209 EKCILCYPRIEKGIANACNRQCPGRV 234 (352)
T ss_dssp EECCTTHHHHTTTBCCHHHHTCTTCC
T ss_pred CCCCCCHHHHHCCCCCCCHHHCCCCC
T ss_conf 06888850776799671435587362
No 60
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=95.09 E-value=0.0008 Score=42.70 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=13.5
Q ss_pred CCCCCCCCHHHHCCCCC
Q ss_conf 76766473455189978
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI 241 (259)
..|..|+.|..+||.+-
T Consensus 45 ~~C~gCg~C~~~CP~~A 61 (150)
T 1jnr_B 45 DMCWECYSCVKMCPQGA 61 (150)
T ss_dssp GGCCCCCHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHCCCC
T ss_conf 40808424230328634
No 61
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=95.02 E-value=0.0031 Score=39.09 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCC-HHHHCCCCCCH
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473-45518997888
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMN-CTQSCPKGLNP 243 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~-C~~vCPkgI~~ 243 (259)
..-..|++|+.|...||.... .....+.+.+. ..+.++.+.+ +-.|..|+. |.-.||..+++
T Consensus 348 ~a~ESCgqC~pCr~G~p~~l~------------~il~~i~~g~~--~~~dl~~l~~---l~~~i~~~s~C~~~~~a~~pl 410 (438)
T 3i9v_1 348 YAHESCGKCTPCREGVAGFMV------------NLFAKIGTGQG--EEKDVENLEA---LLPLIEGRSFCPLADAAVWPV 410 (438)
T ss_dssp HHHHCCSCCHHHHTTTTTHHH------------HHHHHHTTTCC--CHHHHHHHHH---HHHHHTTCCSSTHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHH------------HHHHHHHHCCC--CHHHHHHHHH---HHHHCCCCCCCCCCHHHHHHH
T ss_conf 047778999584888699999------------99999996799--9899999999---997614998267977889999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781044|r 244 AKAIAKIKMMLL 255 (259)
Q Consensus 244 ~~~I~~LRr~~v 255 (259)
...|..-|....
T Consensus 411 ~s~lr~F~~Ef~ 422 (438)
T 3i9v_1 411 KGSLRHFKDQYL 422 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999899999
No 62
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=94.99 E-value=0.0029 Score=39.27 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=13.8
Q ss_pred HHHHHHHHHHCCCHHHCCC
Q ss_conf 4668888873131322820
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPS 182 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~ 182 (259)
+.+...||.||.|+.+||.
T Consensus 211 ~id~~~C~gC~~Cv~~CPy 229 (512)
T 1q16_B 211 LIDQDKCRGWRMCITGCPY 229 (512)
T ss_dssp EECTTTCCCCCCHHHHCTT
T ss_pred EECHHHCCCCHHHHHCCCC
T ss_conf 9756646256678855998
No 63
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=94.75 E-value=0.00089 Score=42.40 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=30.0
Q ss_pred HHHHHHCCCHHHCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88887313132282001-022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 168 YECVMCACCSTSCPSYW-WNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~-~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
.+||.||.|+.+||... .+.+ .+ . .++ ..+ -..|..|+.|.++||.+-
T Consensus 6 e~CigCg~C~~~CP~~~~~~~~--~~-----------------~--~~~--~~~---~~~c~~c~~C~~~CP~~A 54 (58)
T 1f2g_A 6 DDCMACEACVEICPDVFEMNEE--GD-----------------K--AVV--INP---DSDLDCVEEAIDSCPAEA 54 (58)
T ss_dssp TTCCCCCHHHHHCTTTEEECSS--SS-----------------S--EEE--SCT---TCCSTHHHHHHHTCSSCC
T ss_pred CCCCCCCCCHHHCCHHEEEECC--CC-----------------E--EEE--ECC---CCCCHHHHHHHHCCCCCC
T ss_conf 7184700320349841288058--97-----------------4--898--669---986678999985299531
No 64
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=94.74 E-value=0.0038 Score=38.47 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=30.3
Q ss_pred HHHHHHHCCCHHHCCC-EEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 8888873131322820-0102221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 167 LYECVMCACCSTSCPS-YWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~-~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
...||.||.|+.+||. +..+.+. +. . .+... -..|..|+.|.++||.+
T Consensus 6 ~d~CigCg~C~~~CP~~~~~~~~~--~~----------------~------~~~~~--~~~c~~c~~C~~~CP~~ 54 (59)
T 1dwl_A 6 HEECIGCESCVELCPEVFAMIDGE--EK----------------A------MVTAP--DSTAECAQDAIDACPVE 54 (59)
T ss_dssp SCCCSSCCGGGGTSTTTEEEEECS--SC----------------E------EESCT--TCCCGGGGTGGGGSTTC
T ss_pred HHHCCCHHHHHHHCCCCEEEECCC--CE----------------E------EEECC--CCCHHHHHHHHHHCCCC
T ss_conf 898971338423189333780589--84----------------8------99469--75747899999849916
No 65
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A
Probab=94.66 E-value=0.002 Score=40.26 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=30.8
Q ss_pred HHHHHHHCCCHHHCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 888887313132282001-02221011478899988516888431388999622866527676647345518997
Q gi|254781044|r 167 LYECVMCACCSTSCPSYW-WNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~-~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkg 240 (259)
...||.||.|+.+||... .+.+.+. +...+ ...+ -..|..|+.|..+||.+
T Consensus 8 ~~~Ci~Cg~C~~~cP~~~~~~~~g~~---------~~~~~-----------~~~~---~~~c~~c~~c~~~CP~~ 59 (66)
T 1sj1_A 8 QDTCIGDAICASLCPDVFEMNDEGKA---------QPKVE-----------VIED---EELYNCAKEAMEACPVS 59 (66)
T ss_dssp TTTCCCCCHHHHHCTTTEEECTTSCE---------EESCS-----------CBCC---HHHHHHHHHHHHHCTTC
T ss_pred HHHCCCHHHHHHHCCCEEEECCCCCE---------EECCC-----------CCCC---HHHHHHHHHHHHHCCCC
T ss_conf 89896941875749823798258962---------40356-----------6698---68833674997417838
No 66
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=93.90 E-value=0.0078 Score=36.58 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC---------CCHHHHC
Q ss_conf 8888873131322820010222101147889998851688843138899962286652767664---------7345518
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTI---------MNCTQSC 237 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C---------~~C~~vC 237 (259)
...||.|+.|+.+||--.. + + ++. ..-+..|+.| -+|+++|
T Consensus 107 ~~~c~gC~~C~~ACP~~~~----~-----------~--~~~-------------~~~~~KCd~C~~R~~~G~~PaCV~aC 156 (214)
T 1h0h_B 107 TKDLEDYESVISACPYDVP----R-----------K--VAE-------------SNQMAKCDMCIDRITNGLRPACVTSC 156 (214)
T ss_dssp GGGCSCHHHHHHHCTTCCC----E-----------E--CTT-------------SSCEECCCTTHHHHTTTCCCHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCC----C-----------C--CCC-------------CCCEEECCCCHHHHHCCCCCCCHHHC
T ss_conf 4403674711113998885----1-----------3--456-------------78316577738898789986215441
Q ss_pred CCCCC----HHHHHHHHHHHHH
Q ss_conf 99788----8999999999998
Q gi|254781044|r 238 PKGLN----PAKAIAKIKMMLL 255 (259)
Q Consensus 238 PkgI~----~~~~I~~LRr~~v 255 (259)
|.|-- ..+.....++++.
T Consensus 157 Pt~Al~fGd~~d~~~~~~~~~~ 178 (214)
T 1h0h_B 157 PTGAMNFGDLSEMEAMASARLA 178 (214)
T ss_dssp SSSCEEEEEHHHHHHHHHHHHH
T ss_pred CCCCEEEEEHHHHHHHHHHHHH
T ss_conf 3387899605666889999998
No 67
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=93.45 E-value=0.005 Score=37.76 Aligned_cols=51 Identities=16% Similarity=0.371 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCHHHCCC-EEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 68888873131322820-01022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 166 GLYECVMCACCSTSCPS-YWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~-~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+...||.||.|+..||. +..+.+. | . . + +.+. .-..|..|+.|.++||.+-
T Consensus 7 D~~~CigCg~C~~~cP~~f~~~~~~--~-~---------------~---~---v~~~-~~~~~~~~~~~~~~CP~~a 58 (64)
T 1dax_A 7 DQDECIACESCVEIAPGAFAMDPEI--E-K---------------A---Y---VKDV-EGASQEEVEEAMDTCPVQC 58 (64)
T ss_dssp CSTTCCSCCHHHHHCTTTEEECSSS--S-S---------------E---E---ECCG-GGSCHHHHHHHHHHSSSCC
T ss_pred EHHHCCCCCCCCCCCCCEEEECCCC--C-E---------------E---E---EECC-CCCHHHHHHHHHHCCCHHH
T ss_conf 2123897240002099807996889--9-6---------------9---9---9558-9964899999997292765
No 68
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=92.28 E-value=0.015 Score=34.89 Aligned_cols=47 Identities=26% Similarity=0.647 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC---------CHH
Q ss_conf 46688888731313228200102221011478899988516888431388999622866527676647---------345
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIM---------NCT 234 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~---------~C~ 234 (259)
..+...||.|+.|+.+||--. -|.. +. .-+..|+.|. +|+
T Consensus 84 ~id~~kCiGC~~C~~aCPy~a----~~~~-------------~~--------------~~~~KC~~C~~r~~~G~~PaCv 132 (195)
T 2vpz_B 84 LVDPKKCIACGACIAACPYDA----RYLH-------------PA--------------GYVSKCTFCAHRLEKGKVPACV 132 (195)
T ss_dssp EECTTTCCCCCHHHHHCTTCC----CEEC-------------TT--------------SSEECCCTTHHHHHTTCCCHHH
T ss_pred EECHHHCCCHHHHHHCCCCCC----EEEC-------------CC--------------CEEEEECCCHHHHHCCCCCCHH
T ss_conf 965546244104754699998----5747-------------88--------------7278804864046548867306
Q ss_pred HHCCCCC
Q ss_conf 5189978
Q gi|254781044|r 235 QSCPKGL 241 (259)
Q Consensus 235 ~vCPkgI 241 (259)
++||.+-
T Consensus 133 ~~Cp~~A 139 (195)
T 2vpz_B 133 ETCPTYC 139 (195)
T ss_dssp HSCTTCC
T ss_pred HHCCCCC
T ss_conf 5586034
No 69
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=92.25 E-value=0.013 Score=35.20 Aligned_cols=10 Identities=20% Similarity=-0.084 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781044|r 244 AKAIAKIKMM 253 (259)
Q Consensus 244 ~~~I~~LRr~ 253 (259)
..+|.+=|+.
T Consensus 426 v~Ai~~G~~A 435 (456)
T 2vdc_G 426 VWAIRDGRDA 435 (456)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 70
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=92.00 E-value=0.039 Score=32.22 Aligned_cols=48 Identities=27% Similarity=0.640 Sum_probs=29.4
Q ss_pred HHHHHH--CCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 888873--131322820010222101147889998851688843138899962286652767664734551899788
Q gi|254781044|r 168 YECVMC--ACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLN 242 (259)
Q Consensus 168 ~~CI~C--G~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~ 242 (259)
..|..| ..|+.+||+-....+ .+.. .+.|+ ..|+.|+.|+.+||-|+.
T Consensus 56 ~~C~hC~~p~Cv~vCP~gA~~~~------------------e~Gi------V~id~---~kCiGC~~C~~aCPy~a~ 105 (195)
T 2vpz_B 56 EQCLHCENPPCVPVCPTGASYQT------------------KDGL------VLVDP---KKCIACGACIAACPYDAR 105 (195)
T ss_dssp EECCCCSSCTTTTTCSSSCEEEC------------------TTSC------EEECT---TTCCCCCHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHCHHHHHHCC------------------CCCE------EEECH---HHCCCHHHHHHCCCCCCE
T ss_conf 00677999732453537675267------------------7984------99655---462441047546999985
No 71
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP}
Probab=91.83 E-value=0.025 Score=33.40 Aligned_cols=53 Identities=23% Similarity=0.462 Sum_probs=33.3
Q ss_pred HHHHHHHHHHC--CCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 46688888731--3132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 164 IDGLYECVMCA--CCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 164 ~~~~~~CI~CG--~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
++....|..|. .|+++||+-+...+ +.+.. .+.|. -.|..|+.|..+||-|+
T Consensus 145 ~~~p~~C~hC~~p~Cv~~CP~gAi~k~-----------------~~~Gi------V~id~---~kCiGC~~C~~aCPy~a 198 (352)
T 2ivf_B 145 FYLARMCNHCTNPACLAACPTGAIYKR-----------------EDNGI------VLVDQ---ERCKGHRHCVEACPYKA 198 (352)
T ss_dssp EEEEECCCCCSSCHHHHHCTTCCEEEC-----------------TTTCC------EEECT---TTCCCCCHHHHHCTTCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEC-----------------CCCCE------EEECH---HHCCCHHHHHHHCCCCC
T ss_conf 984440369987223060786736976-----------------89846------99423---22947677363399998
Q ss_pred C
Q ss_conf 8
Q gi|254781044|r 242 N 242 (259)
Q Consensus 242 ~ 242 (259)
.
T Consensus 199 ~ 199 (352)
T 2ivf_B 199 I 199 (352)
T ss_dssp E
T ss_pred E
T ss_conf 1
No 72
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=90.91 E-value=0.018 Score=34.32 Aligned_cols=58 Identities=17% Similarity=0.442 Sum_probs=32.1
Q ss_pred HHHHHHHHCCCHHHCCC-EEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 68888873131322820-01022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 166 GLYECVMCACCSTSCPS-YWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~-~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
+...||.||.|+..||. +..+.+.+. ....++.... ..+. --.|..+..|.+.||.+.
T Consensus 7 D~~~Cigcg~C~~~~PevF~~~~dG~a---------~v~~~~~~~~-----~~v~----~~~~~~~~~Aa~~CP~~A 65 (81)
T 1iqz_A 7 DKETCIACGACGAAAPDIYDYDEDGIA---------YVTLDDNQGI-----VEVP----DILIDDMMDAFEGCPTDS 65 (81)
T ss_dssp CTTTCCCCSHHHHHCTTTEEECTTSCE---------EETTTTTSSC-----SCCC----GGGHHHHHHHHHHCTTCC
T ss_pred EHHHCCCCCHHHHHCCHHEEECCCCEE---------EEEECCCCCC-----CCCC----HHHHHHHHHHHHHCCHHH
T ss_conf 288894908375738564038689869---------9971687666-----6798----799999999998195641
No 73
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=89.19 E-value=0.027 Score=33.18 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHCC--CHHHCCCEEE
Q ss_conf 4466888887313--1322820010
Q gi|254781044|r 163 KIDGLYECVMCAC--CSTSCPSYWW 185 (259)
Q Consensus 163 ~~~~~~~CI~CG~--C~saCP~~~~ 185 (259)
..+.-..|..|+. |+.+||+-..
T Consensus 177 ~~~~~~~c~~C~~~~C~~~CP~~Ai 201 (512)
T 1q16_B 177 MMYLPRLCEHCLNPACVATCPSGAI 201 (512)
T ss_dssp CEEEEECCCCCSSCHHHHTCTTCCE
T ss_pred EEECHHHHCCCCCHHHHHCCCCCCE
T ss_conf 6766044277999146523883335
No 74
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=84.61 E-value=0.28 Score=26.95 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=12.7
Q ss_pred HHHHHHHCCCHHHCCCEEEC
Q ss_conf 88888731313228200102
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWWN 186 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~~ 186 (259)
...|.+|+.|.++||+....
T Consensus 207 ~~~~~~~~~~v~~cp~~AI~ 226 (366)
T 3mm5_B 207 IRKTCEIPSTVAACPTGALK 226 (366)
T ss_dssp HHHHCCHHHHHHTCTTCCEE
T ss_pred HHHCCCCCCCCCCCCCCCCC
T ss_conf 74072337630438756425
No 75
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=83.17 E-value=0.3 Score=26.76 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=11.2
Q ss_pred CC-CHHHHHHHHHHHCCCC
Q ss_conf 01-1478899988516888
Q gi|254781044|r 190 YL-GPAILLQAYRWLIDSR 207 (259)
Q Consensus 190 fl-GP~~l~~a~r~~~D~r 207 (259)
|+ ||-.|+++..-..+..
T Consensus 195 ~~CGP~~m~~av~~~~~~~ 213 (262)
T 1ep3_B 195 YTCGAPAMLKAVAKKYDQL 213 (262)
T ss_dssp EEESCHHHHHHHHHHTTTC
T ss_pred EEECCHHHHHHHHHHHHHH
T ss_conf 7639499999999988640
No 76
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 2o01_C*
Probab=82.28 E-value=0.14 Score=28.80 Aligned_cols=18 Identities=39% Similarity=1.030 Sum_probs=15.0
Q ss_pred HHHHHHHCCCHHHCCCEE
Q ss_conf 888887313132282001
Q gi|254781044|r 167 LYECVMCACCSTSCPSYW 184 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~ 184 (259)
..+|+.||.|+.+||+-.
T Consensus 44 ~~~C~~Cg~C~~~CP~~A 61 (80)
T 1jb0_C 44 TEDCVGCKRCETACPTDF 61 (80)
T ss_dssp GGGCCCCCHHHHHCCSSS
T ss_pred HHHCCCCCCCCCCCCCCC
T ss_conf 768999995407599998
No 77
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=80.64 E-value=0.53 Score=25.22 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=14.2
Q ss_pred HHHHHH------CCCHHHCCCEE
Q ss_conf 888873------13132282001
Q gi|254781044|r 168 YECVMC------ACCSTSCPSYW 184 (259)
Q Consensus 168 ~~CI~C------G~C~saCP~~~ 184 (259)
..||.| |.|+.+||+-.
T Consensus 35 ~~C~~C~~~~~~G~C~~vCP~~A 57 (82)
T 2fgo_A 35 NLCTECVGHYDEPQCQQVCPVDC 57 (82)
T ss_dssp TTCCTTTTTCSSCHHHHHCTTCC
T ss_pred CCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 62869989899898140438998
No 78
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=79.88 E-value=0.54 Score=25.15 Aligned_cols=17 Identities=29% Similarity=0.942 Sum_probs=14.5
Q ss_pred HHHHHHCCCHHHCCCEE
Q ss_conf 88887313132282001
Q gi|254781044|r 168 YECVMCACCSTSCPSYW 184 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~ 184 (259)
..||.||.|+.+||+-.
T Consensus 81 ~~C~~Cg~C~~vCP~~A 97 (103)
T 1xer_A 81 QACIFCMACVNVCPVAA 97 (103)
T ss_dssp GGCCCCCHHHHHCTTCC
T ss_pred HHCCCCCHHHCCCCCCC
T ss_conf 33899994023058175
No 79
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=79.77 E-value=0.25 Score=27.21 Aligned_cols=20 Identities=35% Similarity=0.770 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCHHHCCCEEE
Q ss_conf 68888873131322820010
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~ 185 (259)
+...||.||.|..+||....
T Consensus 35 d~~~Ci~Cg~C~~~CP~~Ai 54 (106)
T 7fd1_A 35 HPDECIDCALCEPECPAQAI 54 (106)
T ss_dssp CTTTCCCCCTTGGGCTTCCE
T ss_pred CHHHCCCCCCCHHHHHHCCC
T ss_conf 28888884725688705775
No 80
>2v2k_A Ferredoxin; iron, 3Fe-4S, 4Fe-4S, transport, iron-sulfur, mycobacterium tuberculosis, Fe-S cluster, metal-binding, electron transfer; 1.6A {Mycobacterium smegmatis}
Probab=79.49 E-value=0.19 Score=27.95 Aligned_cols=18 Identities=39% Similarity=0.842 Sum_probs=14.9
Q ss_pred HHHHHHHCCCHHHCCCEE
Q ss_conf 888887313132282001
Q gi|254781044|r 167 LYECVMCACCSTSCPSYW 184 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~ 184 (259)
...||.||.|+.+||.-.
T Consensus 36 ~~~Ci~Cg~C~~~CP~~A 53 (105)
T 2v2k_A 36 PDECVDCGACEPVCPVEA 53 (105)
T ss_dssp TTTCCCCCCSGGGCTTCC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 641879261634188145
No 81
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=77.64 E-value=0.27 Score=27.02 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=14.4
Q ss_pred HHHHHHCCCHHHCCCEE
Q ss_conf 88887313132282001
Q gi|254781044|r 168 YECVMCACCSTSCPSYW 184 (259)
Q Consensus 168 ~~CI~CG~C~saCP~~~ 184 (259)
..||.||.|+.+||.-.
T Consensus 37 ~~C~~Cg~C~~~CP~~A 53 (77)
T 1bc6_A 37 DVCIDCGACEAVCPVSA 53 (77)
T ss_dssp TTCCSCCSHHHHSGGGS
T ss_pred CCCCCCCCCHHHCCCCC
T ss_conf 15928210334487227
No 82
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=77.47 E-value=0.21 Score=27.69 Aligned_cols=18 Identities=33% Similarity=1.058 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCHHHCCC
Q ss_conf 668888873131322820
Q gi|254781044|r 165 DGLYECVMCACCSTSCPS 182 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~ 182 (259)
+.++.|..||.|+.+||.
T Consensus 203 ~gi~~C~~c~~C~~vCP~ 220 (241)
T 2bs2_B 203 DGVFGCMTLLACHDVCPK 220 (241)
T ss_dssp TTGGGCCCCCHHHHHCTT
T ss_pred CCCCCCCCCCCHHHHCCC
T ss_conf 774379885880002889
No 83
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=73.57 E-value=0.34 Score=26.38 Aligned_cols=18 Identities=33% Similarity=0.879 Sum_probs=14.9
Q ss_pred HHHHHHHCCCHHHCCCEE
Q ss_conf 888887313132282001
Q gi|254781044|r 167 LYECVMCACCSTSCPSYW 184 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~ 184 (259)
...||.||.|..+||.-.
T Consensus 36 ~~~C~gCg~C~~~CP~~A 53 (78)
T 1h98_A 36 PEECIDCGACVPACPVNA 53 (78)
T ss_dssp TTTCCCCCTHHHHCTTCC
T ss_pred CCCCCCCCCHHHHCCCCC
T ss_conf 570864230134598036
No 84
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=73.03 E-value=0.35 Score=26.35 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=15.2
Q ss_pred HHHHHHHCCCHHHCCCEEE
Q ss_conf 8888873131322820010
Q gi|254781044|r 167 LYECVMCACCSTSCPSYWW 185 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~~~ 185 (259)
...|+.||.|+.+||....
T Consensus 44 ~~~C~gCg~C~~~CP~~Ai 62 (150)
T 1jnr_B 44 PDMCWECYSCVKMCPQGAI 62 (150)
T ss_dssp GGGCCCCCHHHHHCTTCCE
T ss_pred CCCCCCHHHHHHHHCCCCC
T ss_conf 2408084242303286341
No 85
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=72.37 E-value=0.36 Score=26.21 Aligned_cols=15 Identities=33% Similarity=0.879 Sum_probs=9.0
Q ss_pred HHHHHCCCHHHCCCE
Q ss_conf 888731313228200
Q gi|254781044|r 169 ECVMCACCSTSCPSY 183 (259)
Q Consensus 169 ~CI~CG~C~saCP~~ 183 (259)
.|+.||.|+.+||.-
T Consensus 45 ~C~~C~~Cv~~CP~~ 59 (166)
T 3gyx_B 45 ACWECYSCIKICPQG 59 (166)
T ss_dssp GCCCCCHHHHHCSSC
T ss_pred HCCCCCCCHHHCCHH
T ss_conf 898826252250966
No 86
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 1zoy_B* 1zp0_B*
Probab=70.94 E-value=0.35 Score=26.34 Aligned_cols=17 Identities=35% Similarity=1.007 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCHHHCCC
Q ss_conf 68888873131322820
Q gi|254781044|r 166 GLYECVMCACCSTSCPS 182 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~ 182 (259)
.++.|..||.|+.+||.
T Consensus 211 g~~~C~~c~~C~~vCPk 227 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPK 227 (252)
T ss_dssp TTTTCCCCCHHHHHCTT
T ss_pred CCCCCCCCCCHHHHCCC
T ss_conf 81279783852234799
No 87
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=61.18 E-value=2.2 Score=21.38 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=7.9
Q ss_pred CCCCCCHHHHCCCCC
Q ss_conf 766473455189978
Q gi|254781044|r 227 CHTIMNCTQSCPKGL 241 (259)
Q Consensus 227 C~~C~~C~~vCPkgI 241 (259)
|+.|+.|..+||+.+
T Consensus 286 Cv~Cg~CI~~cP~a~ 300 (418)
T 3mm5_A 286 CVRCMHCINKMPKAL 300 (418)
T ss_dssp CCCCCHHHHHCTTTE
T ss_pred CCCCHHHHHHCCHHH
T ss_conf 685515354098533
No 88
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A*
Probab=60.78 E-value=1.7 Score=22.11 Aligned_cols=17 Identities=24% Similarity=0.655 Sum_probs=10.1
Q ss_pred HHHHHHHHCCCHHHCCC
Q ss_conf 68888873131322820
Q gi|254781044|r 166 GLYECVMCACCSTSCPS 182 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~ 182 (259)
+-.+|+.||.|..+||.
T Consensus 299 d~~~CvrCm~CIn~cP~ 315 (437)
T 3or1_A 299 DNKNCTRCMHCINTMPR 315 (437)
T ss_dssp CGGGCCCCSHHHHHCTT
T ss_pred CCCCCCCCCCCHHHCCH
T ss_conf 40005636762311997
No 89
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B*
Probab=58.83 E-value=1.1 Score=23.12 Aligned_cols=17 Identities=35% Similarity=0.952 Sum_probs=10.4
Q ss_pred HHHHHHHCCCHHHCCCE
Q ss_conf 88888731313228200
Q gi|254781044|r 167 LYECVMCACCSTSCPSY 183 (259)
Q Consensus 167 ~~~CI~CG~C~saCP~~ 183 (259)
..+|+.||.|+.+||..
T Consensus 255 ~~~C~~Cg~C~~~cp~~ 271 (386)
T 3or1_B 255 NDRCMYCGNCYTMCPAL 271 (386)
T ss_dssp TTTCCCCCHHHHHCTTC
T ss_pred CCCCCCCCCCCCCCCHH
T ss_conf 77685233000238877
No 90
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3}
Probab=53.85 E-value=5.1 Score=19.08 Aligned_cols=59 Identities=19% Similarity=0.083 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCEEEECCCC-CCCCCCCHHCCCCCEEEEECCC
Q ss_conf 8116789999997328763884045677-3544303143612-6632110000478518986489
Q gi|254781044|r 56 GPMVLDGLLYIKNKIDPTLTLRRSCREG-ICGSCGMNIDGTN-TLACVKDMKDIKGAIAVYPLPH 118 (259)
Q Consensus 56 ~~tvld~L~~ik~~~D~sl~fr~sCr~g-iCGsCa~~iNG~~-~LAC~t~~~~~~~~i~iePl~~ 118 (259)
|-||--||..--.. .-.=||.+-=|.- -||.|.+.+||.| ..||++.+.+ ++.++....
T Consensus 30 Gdt~asAL~ang~~-~~~rs~k~rpRG~~~~g~~~~~~~~~~~~~a~~~~~~~---gl~~~~~~~ 90 (493)
T 1y56_A 30 GEKLPVALLANEIY-WLTTSNEGRKRGAFTFGPVPMTVNGVKGLEARRIKVKD---GMKIERQGY 90 (493)
T ss_dssp TCBHHHHHHHTTCC-CCEECTTSCEECSSSSSCCEEBSSSCTTEEGGGCBCCT---TCEEBCCCT
T ss_pred CCHHHHHHHHCCCE-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC---CCEEEECCC
T ss_conf 99899999977998-86068999988752347551202677873011798338---978851577
No 91
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PFU-562899-001, PSI, protein structure initiative; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=48.62 E-value=13 Score=16.55 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred EEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCEEEECCCCCCCCCCCHHC
Q ss_conf 9999986368888887368998642678811678999999732876388404-567735443031436126632110000
Q gi|254781044|r 28 KEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRS-CREGICGSCGMNIDGTNTLACVKDMKD 106 (259)
Q Consensus 28 ~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~s-Cr~giCGsCa~~iNG~~~LAC~t~~~~ 106 (259)
.+++|.=|-.-.+..+ ..+.++++. .+.||.|++..+.+.. |.+.-+.. .-..+=..+-+.|||+..-. .+.+.+
T Consensus 10 mkI~V~~Fa~lre~~g-~~~~~le~~-~~~Tv~~Ll~~L~~~~-p~~~~~l~~~~~~~~~~v~v~vN~~~~~~-d~~L~d 85 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAG-VDEEEIELP-EGARVRDLIEEIKKRH-EKFKEEVFGEGYDEDADVNIAVNGRYVSW-DEELKD 85 (98)
T ss_dssp EEEEEEECTHHHHHHS-SSEEEEEEC-TTCBHHHHHHHHHHHC-GGGGGSCBCSSSCTTSSBEEEETTBCCCT-TCBCCT
T ss_pred EEEEEEEHHHHHHHHC-CCEEEEECC-CCCCHHHHHHHHHHHC-CHHHHHHHHHCCCCCCCEEEEECCEECCC-CCCCCC
T ss_conf 8999999489899859-974999889-9997999999999867-15788864110145664799988899699-978099
Q ss_pred CCCCEEEEE
Q ss_conf 478518986
Q gi|254781044|r 107 IKGAIAVYP 115 (259)
Q Consensus 107 ~~~~i~ieP 115 (259)
+++|.|=|
T Consensus 86 -gDeVai~P 93 (98)
T 1vjk_A 86 -GDVVGVFP 93 (98)
T ss_dssp -TCEEEEES
T ss_pred -CCEEEEEC
T ss_conf -89999979
No 92
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain protein, transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=33.85 E-value=22 Score=15.12 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=34.8
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf 0799999863688888873689986426788116789999997328763884045677354430314361
Q gi|254781044|r 26 NLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGT 95 (259)
Q Consensus 26 ~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~ 95 (259)
..|++.|.-.-... ....-.+|.|.+. .|.+++++|..++ +.|+-++|..- ...=|-=--.|||.
T Consensus 294 ItV~ytv~~~~~g~-~~~~~~s~~VsV~-~gssl~~Vl~~A~-~~n~~F~F~t~--~s~~G~yvtsInGi 358 (399)
T 2pmv_A 294 ITVIYTINNQLRGV-ELLFNETINVSVK-SGSVLLVVLEEAQ-RKNPMFKFETT--MTSWGLVVSSINNI 358 (399)
T ss_dssp EEEEEEEECCCSSC-CCCEECCEEEESS-SCSCHHHHHHHHH-HSCCSCCEEEE--EETTEEEEEEESSC
T ss_pred EEEEEEEEECCCCC-CCCCCCEEEEEEC-CCCCHHHHHHHHH-HHCCCCEEEEE--ECCCCEEEEEECCE
T ss_conf 69999986223456-6676630799968-9897999999999-76898327887--44886158865472
No 93
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=23.21 E-value=25 Score=14.77 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCCCCCCCHHHHCCCCC
Q ss_conf 76766473455189978
Q gi|254781044|r 225 YRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 225 ~~C~~C~~C~~vCPkgI 241 (259)
.+|.+|+.|.-.||...
T Consensus 551 ~nc~hcktc~i~~p~~~ 567 (584)
T 2gmh_A 551 QNCVHCKTCDIKDPSQN 567 (584)
T ss_dssp GGCCCCCHHHHHCTTCC
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 88752578463078888
Done!