RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781044|ref|YP_003065457.1| succinate dehydrogenase iron-sulfur subunit [Candidatus Liberibacter asiaticus str. psy62] (259 letters) >gnl|CDD|180322 PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed. Length = 232 Score = 451 bits (1164), Expect = e-128 Identities = 152/232 (65%), Positives = 189/232 (81%), Gaps = 1/232 (0%) Query: 29 EYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSC 88 ++IYR+NPD NP M TY VD+D CGPMVLD L+ IKN+IDPTLT RRSCREG+CGS Sbjct: 1 TFKIYRYNPDVDANPRMQTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSD 60 Query: 89 GMNIDGTNTLACVKDMKDIK-GAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVS 147 MNI+G N LAC+ + D+K G I + PLP + VIKDLVVDM+ FY+Q+RSI+P+L + Sbjct: 61 AMNINGKNGLACITPISDLKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDT 120 Query: 148 PKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSR 207 P PA+E LQS EDR+K+DGLYEC++CACCSTSCPS+WWN D++LGPA LLQAYR++ DSR Sbjct: 121 PPPARERLQSPEDREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSR 180 Query: 208 DEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 DE GERLD L+DPF ++RCHTIMNC + CPKGLNP KAI +IK MLL+R++ Sbjct: 181 DEATGERLDILDDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLERRV 232 >gnl|CDD|177740 PLN00129, PLN00129, succinate dehydrogenase [ubiquinone] iron-sulfur subunit. Length = 276 Score = 411 bits (1058), Expect = e-115 Identities = 157/236 (66%), Positives = 189/236 (80%), Gaps = 3/236 (1%) Query: 25 KNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGI 84 NLKE++IYRWNPDN G P + +Y VDL++CGPMVLD L+ IKN+ DP+LT RRSCREGI Sbjct: 41 SNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGI 100 Query: 85 CGSCGMNIDGTNTLACVKDM-KDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWL 143 CGSC MNIDG NTLAC+ + +D G + PLPHM VIKDLVVDM++FY Q++SIEPWL Sbjct: 101 CGSCAMNIDGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSIEPWL 160 Query: 144 KTVSPKPA--KELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYR 201 KT P KE LQS EDR K+DG+YEC++CACCSTSCPSYWWN +++LGPA LL AYR Sbjct: 161 KTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYR 220 Query: 202 WLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257 W+ DSRDE+ ERL+ L+D F+LYRCHTI NC+ +CPKGLNPAKAIAKIK +L Sbjct: 221 WISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLLGLG 276 >gnl|CDD|171592 PRK12575, PRK12575, succinate dehydrogenase iron-sulfur subunit; Provisional. Length = 235 Score = 283 bits (726), Expect = 2e-77 Identities = 120/228 (52%), Positives = 167/228 (73%), Gaps = 1/228 (0%) Query: 32 IYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN 91 IYR++PD+ P M Y + M+LD L +K + D TL+ RRSCREGICGS MN Sbjct: 9 IYRYDPDDDAAPRMQRYEIAPRAEDRMLLDVLGRVKAQ-DETLSYRRSCREGICGSDAMN 67 Query: 92 IDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPA 151 I+G N LAC+ +M+ + I + PLP + V++DL+VDM+ F++Q+ SI P+L + P Sbjct: 68 INGRNGLACLTNMQALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPPE 127 Query: 152 KELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQ 211 +E LQ+ ++R+++DGLYEC++CACCST+CPSYWWN D+++GPA LLQAYR++ DSRD+ Sbjct: 128 RERLQTPQEREQLDGLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRDDAT 187 Query: 212 GERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 RLD+LEDP+RL+RC TIMNC CPKGLNPA+AI +I+ ML R + Sbjct: 188 AARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARRAV 235 >gnl|CDD|161850 TIGR00384, dhsB, succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase. Length = 220 Score = 273 bits (700), Expect = 3e-74 Identities = 109/222 (49%), Positives = 151/222 (68%), Gaps = 4/222 (1%) Query: 32 IYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN 91 + R+NPD P + +Y V D VLD L YIK++ DP+L RRSCR GICGSC MN Sbjct: 1 VLRFNPDVDEKPHLQSYEVPADEG-MTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMN 59 Query: 92 IDGTNTLACVKDMKDIKG-AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVS-PK 149 ++G LAC ++D+ + + PLP++ VIKDLVVDM FY++ +I+P+L S P+ Sbjct: 60 VNGKPVLACKTKVEDLGQPVMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPE 119 Query: 150 PAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDE 209 P E LQ+ E R+K+D L C++C CC +SCP++WWN + +LGPA L AYR+LIDSRD Sbjct: 120 PEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWNPE-FLGPAALTAAYRFLIDSRDH 178 Query: 210 FQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIK 251 +RL+ L D ++RC T MNC++ CPKG+NPA+AI K+K Sbjct: 179 ATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK 220 >gnl|CDD|183604 PRK12576, PRK12576, succinate dehydrogenase iron-sulfur subunit; Provisional. Length = 279 Score = 165 bits (420), Expect = 9e-42 Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 12/228 (5%) Query: 30 YRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCG 89 +++ R++P+ Y V +D V + L IK + DPTL+ R SC +CGSCG Sbjct: 11 FKVKRYDPEKGS--WWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCG 67 Query: 90 MNIDGTNTLAC---VKDM-KDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWL-- 143 M I+G LAC V D+ K I + P+ + V+KDL+VD FY + ++P L Sbjct: 68 MKINGEPRLACKTLVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYR 127 Query: 144 KTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWL 203 + E ED++++ +C+ C C ++CP + + +LGPA + YR+L Sbjct: 128 AKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPVVAIDPE-FLGPAAHAKGYRFL 186 Query: 204 IDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIK 251 D RD ER+ L D +RC +C+ CP+ + P AI K + Sbjct: 187 ADPRDTITEERMKILIDS--SWRCTYCYSCSNVCPRDIEPVTAIKKTR 232 >gnl|CDD|183605 PRK12577, PRK12577, succinate dehydrogenase iron-sulfur subunit; Provisional. Length = 329 Score = 162 bits (412), Expect = 9e-41 Identities = 80/243 (32%), Positives = 129/243 (53%), Gaps = 17/243 (6%) Query: 29 EYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSC 88 ++I R ++ P + TY ++++ G +LD L IK + D +L R++CR ICGSC Sbjct: 4 LFKILRQKQNS--APYVQTYTLEVEP-GNTILDCLNRIKWEQDGSLAFRKNCRNTICGSC 60 Query: 89 GMNIDGTNTLACVKDMK-----------DIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHR 137 M I+G + LAC +++ I + PL +M VIKDLVVDMS F+ Sbjct: 61 AMRINGRSALACKENVGSELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLE 120 Query: 138 SIEPWLKTVSPK-PAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAIL 196 +++P++ T + + P +E LQ+ E+R K+D C++C C + C + N + ++GP L Sbjct: 121 AVDPYVSTAARQVPEREFLQTPEERSKLDQTGNCILCGACYSECNAREVNPE-FVGPHAL 179 Query: 197 LQAYRWLIDSRDEFQGERLDNL-EDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLL 255 +A R + DSRD +RL+ + ++ C C CP + P I KIK +L Sbjct: 180 AKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQEIL 239 Query: 256 DRK 258 RK Sbjct: 240 ARK 242 >gnl|CDD|183490 PRK12385, PRK12385, fumarate reductase iron-sulfur subunit; Provisional. Length = 244 Score = 149 bits (377), Expect = 9e-37 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 32 IYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMN 91 + R+NP+ P TY V D +LD L YIK+ + P L+ R SCR ICGSCGM Sbjct: 11 VLRYNPEVDTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMM 69 Query: 92 IDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPA 151 ++ LAC ++D G + V L + + +DLVVDM+HF +I+P++ P Sbjct: 70 VNNVPKLACKTFLRDYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPD 129 Query: 152 K-ELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEF 210 Q+ K C+ C C +CP + N + ++GPA + A+R+ +DSRD Sbjct: 130 DGPNKQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNLDSRDHG 188 Query: 211 QGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIK 251 + ER+ L ++ C + C++ CPK ++PA AI + K Sbjct: 189 KKERMKQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGK 229 >gnl|CDD|180493 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional. Length = 486 Score = 128 bits (324), Expect = 1e-30 Identities = 77/226 (34%), Positives = 114/226 (50%), Gaps = 21/226 (9%) Query: 31 RIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGM 90 + R++P+ K P ++Y V + G VLD L YI D + R SCR G CGSC + Sbjct: 7 TVKRFDPE-KDEPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAV 64 Query: 91 NIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKP 150 I+G LAC +++D G I + PL VIKDL+VD +Y + +S+ +L+ + K Sbjct: 65 TINGEPVLACKTEVED--GMI-IEPL-DFPVIKDLIVDREPYYKKLKSLRNYLQRKNEKI 120 Query: 151 AKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEF 210 ED + I L C+ C C ++CP+ Y GP + Q R+ D RDE Sbjct: 121 TYP-----EDIEDIKKLRGCIECLSCVSTCPAR--KVSDYPGPTFMRQLARFAFDPRDEG 173 Query: 211 QGERLDNLEDPFR--LYRCHTIMNCTQSCPKGLN-PAKAIAKIKMM 253 D ++ F LY C T C + CPK ++ P KAI K++ + Sbjct: 174 -----DREKEAFDEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRAL 214 >gnl|CDD|184136 PRK13552, frdB, fumarate reductase iron-sulfur subunit; Provisional. Length = 239 Score = 107 bits (269), Expect = 3e-24 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 24/240 (10%) Query: 29 EYRIYRWNPDNKGN-PCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGS 87 + I+R+NP + G+ P M TY ++ + G + L I+ + DP+L CR GICGS Sbjct: 6 TFNIFRYNPQDPGSKPHMVTYQLE-ETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGS 64 Query: 88 CGMNIDGTNTLAC---VKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQ-HRSIEPWL 143 C M I+G TLAC D D G I + PLP +I DL V+ ++ + +E W+ Sbjct: 65 CAMVINGRPTLACRTLTSDYPD--GVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWI 122 Query: 144 KT-VSPKPAK-ELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYR 201 T + E E+ +I L C+ C CC +C + D ++G L + R Sbjct: 123 HTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACGTKQMRED-FVGAVGLNRIAR 181 Query: 202 WLIDSRDEFQGERLDNLEDPFRL-------YRCHTIMNCTQSCPKGLNPAKAIAKIKMML 254 + +D RD ER D ED + L + C +++ C +CPK L + IA ++ + Sbjct: 182 FELDPRD----ERTD--EDFYELIGNDDGVFGCMSLLGCEDNCPKDLPLQQQIAYLRRKM 235 >gnl|CDD|181515 PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed. Length = 249 Score = 77.3 bits (191), Expect = 3e-15 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 11/177 (6%) Query: 80 CREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSI 139 C E +CG+C M I+G AC + ++ I + P+ V++DL VD S + + + Sbjct: 63 CLEEVCGACSMVINGKPRQACTALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRV 122 Query: 140 EPWLKT-----VSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPA 194 + W+ + P P E RQ L +C+ C CC +CP+ SD ++GPA Sbjct: 123 KAWIPIDGTYDLGPGPR----MPEEKRQWAYELSKCMTCGCCLEACPNVNEKSD-FIGPA 177 Query: 195 ILLQAYRWLIDSRDEFQ-GERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKI 250 + Q + E ERL L + C NC + CPKG+ +IA + Sbjct: 178 AISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGIPLTTSIAAM 234 >gnl|CDD|183491 PRK12386, PRK12386, fumarate reductase iron-sulfur subunit; Provisional. Length = 251 Score = 75.5 bits (186), Expect = 1e-14 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 19/234 (8%) Query: 35 WNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDG 94 W D G D Y V++ N G +VLD + ++ P L +R +C+ G CGSC I+G Sbjct: 10 WRGDASGGELQD-YTVEV-NEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEING 67 Query: 95 TNTLACVKDMKDIKGA--IAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAK 152 L C+ M + V P+ VI+DLV D+S Y + R I + +P + Sbjct: 68 RPRLMCMTRMSTFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQPGE 127 Query: 153 ELLQSHEDRQKIDGLYECVMCACCSTSC---PSYWWNSDRYLGPAILLQAYRWL----ID 205 +Q D ++ +C+ C C C + N + GP L++ L +D Sbjct: 128 YRMQ-QVDVERSQEFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMR-IAELEMHPLD 185 Query: 206 SRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPA-KAIAKIKMMLLDRK 258 + D R ++ L C+ CT+ CP+ + A+ +K ++DRK Sbjct: 186 TAD-----RRAEAQEEHGLGYCNITKCCTEVCPEHIKITDNALIPMKERVVDRK 234 >gnl|CDD|181038 PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated. Length = 250 Score = 54.1 bits (131), Expect = 3e-08 Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 23/119 (19%) Query: 80 CREGICGSCGMNIDG------TNTLACVKDMKDIK-GA-IAVYP-----LPHMSVIKDLV 126 CREGICG CG+ I+G T C M+ K G I + P P VIKDLV Sbjct: 58 CREGICGMCGLVINGRPHGPDRGTTTCQLHMRSFKDGDTITIEPWRAAAFP---VIKDLV 114 Query: 127 VDMSHFYSQHRSIE----PWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCP 181 VD S R I+ + T A + ED + C+ C C +CP Sbjct: 115 VDRSAL---DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAAACIGCGACVAACP 170 >gnl|CDD|132333 TIGR03290, CoB_CoM_SS_C, CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate. Length = 144 Score = 33.6 bits (77), Expect = 0.057 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 13/78 (16%) Query: 170 CVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHT 229 C C C+ SCPS G +YR + R G + + + D L+ C T Sbjct: 4 CYQCGTCTGSCPS---------GR---RTSYRTRLIIRKALLGLKDEVISDD-DLWMCTT 50 Query: 230 IMNCTQSCPKGLNPAKAI 247 C + CP+ + I Sbjct: 51 CYTCQERCPRDVKITDII 68 >gnl|CDD|129414 TIGR00314, cdhA, CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model. Length = 784 Score = 32.1 bits (73), Expect = 0.16 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 31/106 (29%) Query: 146 VSPKPAKELLQSHEDRQK--------IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILL 197 V+ + A+ + + D +K ++ +C C C +CP NS R + A+ Sbjct: 369 VAVEVAEAIAKKRGDERKFLPDDEELMELANKCTQCGNCVRTCP----NSLR-VDEAMAH 423 Query: 198 QAYRWLIDSRDEFQGER--LDNLEDPFRLYRCHTIMNCTQSCPKGL 241 +G+ L+ LE+ +C+ C Q+CPK + Sbjct: 424 AQ-----------KGDLSKLEQLEE-----QCYACGRCEQACPKNI 453 >gnl|CDD|181680 PRK09182, PRK09182, DNA polymerase III subunit epsilon; Validated. Length = 294 Score = 31.1 bits (71), Expect = 0.29 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Query: 6 LPKRSRVKRGKIW--NAPTGEKN-LKEYRIYRWNPDNKGNP 43 L + SR R +IW N+P K+ LK R YRW+ + G P Sbjct: 209 LLEASRRSRVRIWAENSPFEMKDHLKA-RGYRWSDGSDGRP 248 >gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme. Length = 848 Score = 31.0 bits (70), Expect = 0.33 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 8/38 (21%) Query: 80 CREGICGSCGMNIDGTNTLACV--------KDMKDIKG 109 C EG CG+C + ++G AC K++ ++G Sbjct: 35 CGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEG 72 >gnl|CDD|162617 TIGR01945, rnfC, electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. Length = 435 Score = 30.0 bits (68), Expect = 0.55 Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 166 GLYECVMCACCSTSCPS 182 L +C+ C CCS CPS Sbjct: 400 NLMDCIECGCCSYVCPS 416 >gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family. Length = 228 Score = 29.8 bits (67), Expect = 0.81 Identities = 6/19 (31%), Positives = 8/19 (42%) Query: 170 CVMCACCSTSCPSYWWNSD 188 C+ C C CP +W Sbjct: 205 CIKCGACYVQCPRAFWPEY 223 >gnl|CDD|180265 PRK05802, PRK05802, hypothetical protein; Provisional. Length = 320 Score = 29.6 bits (67), Expect = 0.87 Identities = 10/30 (33%), Positives = 13/30 (43%) Query: 79 SCREGICGSCGMNIDGTNTLACVKDMKDIK 108 C EGICG+C + G K D + Sbjct: 291 CCGEGICGACTVRYGGHKVKRLCKVQVDPR 320 >gnl|CDD|183008 PRK11168, glpC, sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional. Length = 396 Score = 28.7 bits (65), Expect = 1.7 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 24/87 (27%) Query: 170 CVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQG---ERL----DNLEDPF 222 C+ C C+T+CP N Y GP + G ERL L D Sbjct: 9 CIKCTVCTTACPVARVN-PLYPGP---------------KQAGPDGERLRLKDGALYDES 52 Query: 223 RLYRCHTIMNCTQSCPKGLNPAKAIAK 249 Y C C +CP G+ I + Sbjct: 53 LKY-CSNCKRCEVACPSGVKIGDIIQR 78 >gnl|CDD|179919 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional. Length = 695 Score = 28.0 bits (63), Expect = 2.3 Identities = 7/17 (41%), Positives = 11/17 (64%) Query: 167 LYECVMCACCSTSCPSY 183 L++C+ C C+ CPS Sbjct: 408 LFDCIECGACAYVCPSN 424 >gnl|CDD|182139 PRK09908, PRK09908, xanthine dehydrogenase subunit XdhC; Provisional. Length = 159 Score = 28.0 bits (62), Expect = 2.4 Identities = 10/28 (35%), Positives = 19/28 (67%) Query: 74 LTLRRSCREGICGSCGMNIDGTNTLACV 101 L++++ C G CG+C + +DGT +C+ Sbjct: 38 LSVKQGCCVGECGACTVLVDGTAIDSCL 65 >gnl|CDD|132237 TIGR03193, 4hydroxCoAred, 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme. Length = 148 Score = 27.5 bits (61), Expect = 3.7 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 59 VLDGLL---YIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACV 101 V D +L Y+++ + T T ++ C G CG+C + +DG LAC Sbjct: 15 VADNMLLVDYLRDTVGLTGT-KQGCDGGECGACTVLVDGRPRLACS 59 >gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional. Length = 340 Score = 27.4 bits (61), Expect = 4.1 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 80 CREGICGSC 88 CREG+CG+C Sbjct: 40 CREGVCGTC 48 >gnl|CDD|132242 TIGR03198, pucE, xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component. Length = 151 Score = 27.1 bits (60), Expect = 4.2 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 71 DPTLT-LRRSCREGICGSCGMNIDGTNTLACV 101 + LT + SC G CG+C + IDG AC+ Sbjct: 30 ELQLTGTKVSCGIGRCGACSVLIDGKLANACL 61 >gnl|CDD|178446 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase. Length = 424 Score = 27.0 bits (60), Expect = 5.4 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 11/45 (24%) Query: 95 TNTLACVKDMKDI------KGAI----AVYPLPHMSV-IKDLVVD 128 +N L + ++DI GA A +PHM V ++ L D Sbjct: 183 SNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGAD 227 >gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional. Length = 1006 Score = 26.8 bits (59), Expect = 5.5 Identities = 34/136 (25%), Positives = 45/136 (33%), Gaps = 46/136 (33%) Query: 83 GICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQH-RSIEP 141 G+CGSC + + G ACV D D G H K+L F SQ R+ E Sbjct: 220 GMCGSCRVTVGGEVKFACV-DGPDFDG--------HKVDFKELHARQKRFKSQEDRANED 270 Query: 142 W--------------------LKTVSPKPAKELLQSHEDRQK-----------IDGLYE- 169 + LKT+ P + +R + D L E Sbjct: 271 YAHVCNLEKQLFEEGKRNYKKLKTLVPHQTPMPERDAVERARNFKEVNLGYSLEDALQEA 330 Query: 170 --CVMCA--CCSTSCP 181 C+ CA C CP Sbjct: 331 ERCIQCAKPTCIAGCP 346 >gnl|CDD|177761 PLN00162, PLN00162, transport protein sec23; Provisional. Length = 761 Score = 26.8 bits (60), Expect = 5.8 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 76 LRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAI 111 LRR GS G++ +GT + C KD+K ++GAI Sbjct: 386 LRRVFERDGEGSLGLSFNGTFEVNCSKDVK-VQGAI 420 >gnl|CDD|179457 PRK02651, PRK02651, photosystem I subunit VII; Provisional. Length = 81 Score = 26.9 bits (59), Expect = 6.0 Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 169 ECVMCACCSTSCPSYWWNSDRYLGP 193 +CV C C T+CP+ + + YLG Sbjct: 47 DCVGCKRCETACPTDFLSIRVYLGA 71 >gnl|CDD|107017 PHA01076, PHA01076, putative encapsidation protein. Length = 378 Score = 26.5 bits (58), Expect = 6.9 Identities = 11/33 (33%), Positives = 15/33 (45%) Query: 22 TGEKNLKEYRIYRWNPDNKGNPCMDTYYVDLDN 54 TGE EY + N N N D +Y+ D+ Sbjct: 219 TGEFEFNEYNLADDNLRNHINQNGDFFYIKTDD 251 >gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 196 Score = 26.4 bits (59), Expect = 7.2 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 19/49 (38%) Query: 83 GICGSCGMNI--------DGTNTL----ACVKDMKDIKGAIAVYPLPHM 119 GIC GM + G + L VK M D G PLPHM Sbjct: 75 GIC--LGMQLLGERSEESGGVDCLGIIDGPVKKMTD-FG----LPLPHM 116 >gnl|CDD|183069 PRK11274, glcF, glycolate oxidase iron-sulfur subunit; Provisional. Length = 407 Score = 26.4 bits (59), Expect = 7.9 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 8/34 (23%) Query: 149 KPAKELLQSHEDRQKIDGLYECVMCACCSTSCPS 182 E Q H DR C+ C C T+CPS Sbjct: 62 AEVTEKTQLHLDR--------CLTCRNCETTCPS 87 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.139 0.454 Gapped Lambda K H 0.267 0.0624 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,250,723 Number of extensions: 256904 Number of successful extensions: 577 Number of sequences better than 10.0: 1 Number of HSP's gapped: 534 Number of HSP's successfully gapped: 49 Length of query: 259 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 168 Effective length of database: 4,028,145 Effective search space: 676728360 Effective search space used: 676728360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.6 bits)