BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781044|ref|YP_003065457.1| succinate dehydrogenase
iron-sulfur subunit [Candidatus Liberibacter asiaticus str. psy62]
         (259 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781044|ref|YP_003065457.1| succinate dehydrogenase iron-sulfur subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 259

 Score =  538 bits (1386), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/259 (100%), Positives = 259/259 (100%)

Query: 1   MVEIMLPKRSRVKRGKIWNAPTGEKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVL 60
           MVEIMLPKRSRVKRGKIWNAPTGEKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVL
Sbjct: 1   MVEIMLPKRSRVKRGKIWNAPTGEKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVL 60

Query: 61  DGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMS 120
           DGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMS
Sbjct: 61  DGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMS 120

Query: 121 VIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSC 180
           VIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSC
Sbjct: 121 VIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSC 180

Query: 181 PSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240
           PSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG
Sbjct: 181 PSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKG 240

Query: 241 LNPAKAIAKIKMMLLDRKI 259
           LNPAKAIAKIKMMLLDRKI
Sbjct: 241 LNPAKAIAKIKMMLLDRKI 259


>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 297

 Score = 24.6 bits (52), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 124 DLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQK 163
           D+++ +      HRS    L  ++ KP   ++  HE+R+K
Sbjct: 43  DIILPLEGMIDHHRS--KILSIIADKPIDLIIHRHENRRK 80


>gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 311

 Score = 24.6 bits (52), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 218 LEDPFRLY--RCHTIMNCTQSCPKGL 241
           +ED  + Y  +C  +MNC Q    GL
Sbjct: 183 IEDVLKFYFHQCSLMMNCVQLAKSGL 208


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 23.9 bits (50), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)

Query: 143 LKTVSPKPAKELLQSHEDRQKIDGLYECVMCACC 176
           LKT+SP+  +  L+ H      DG ++CV   CC
Sbjct: 844 LKTISPR-QESTLEIHYS----DGTFKCVPIICC 872


>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 163

 Score = 23.1 bits (48), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 120 SVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTS 179
             +    + + +F+    +I    +  S  P       H  R+  +G   C+ C  C   
Sbjct: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSP--RFRGEHALRRYPNGEERCIACKLCEAI 72

Query: 180 CPS 182
           CP+
Sbjct: 73  CPA 75


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.139    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,735
Number of Sequences: 1233
Number of extensions: 7159
Number of successful extensions: 17
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 259
length of database: 328,796
effective HSP length: 72
effective length of query: 187
effective length of database: 240,020
effective search space: 44883740
effective search space used: 44883740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)