Query gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 57 out of 59
Neff 4.3
Searched_HMMs 33803
Date Wed Jun 1 20:54:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781045.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1jiw_I Proteinase inhibitor; 98.8 2E-08 5.9E-13 71.4 7.3 90 71-162 7-103 (106)
2 >1smp_I Erwinia chrysanthemi i 98.0 1.5E-05 4.6E-10 53.7 6.5 89 71-162 7-99 (101)
3 >1ufg_A Lamin A, nuclear lamin 46.7 19 0.00058 16.3 4.0 30 112-141 114-143 (151)
4 >3gd0_A Laminaripentaose-produ 46.3 18 0.00054 16.4 3.0 22 119-141 35-56 (56)
5 >2kts_A Heat shock protein HSL 42.7 17 0.00051 16.6 2.3 61 70-141 42-114 (117)
6 >3cnc_A Fiber protein; adenovi 40.5 20 0.00058 16.2 2.4 15 88-102 51-65 (220)
7 >3di4_A Uncharacterized protei 38.2 26 0.00078 15.5 2.9 13 134-146 94-106 (259)
8 >1h7z_A Adenovirus fibre prote 34.7 26 0.00078 15.4 2.3 13 70-82 121-133 (194)
9 >1nnx_A Protein YGIW; structur 32.3 33 0.00097 14.9 2.6 37 122-161 51-87 (109)
10 >2z4i_A Copper homeostasis pro 30.1 36 0.0011 14.6 3.9 86 70-159 16-108 (113)
11 >1kac_A Protein (fiber KNOB pr 29.6 36 0.0011 14.6 2.9 42 64-105 115-159 (185)
12 >3hn9_A Lamin-B1; structural g 29.6 36 0.0011 14.6 3.2 28 113-140 89-116 (123)
13 >3k9t_A Putative peptidase; st 29.1 20 0.00059 16.2 0.9 24 117-143 2-25 (59)
14 >1ifr_A Lamin A/C; immunoglobu 26.3 42 0.0012 14.2 4.0 29 113-141 84-112 (121)
15 >1exg_A EXO-1,4-beta-D-glycana 25.1 44 0.0013 14.1 4.2 37 84-121 4-41 (110)
16 >1qiu_A Adenovirus fibre; fibr 22.9 43 0.0013 14.1 1.6 25 70-94 118-143 (189)
17 >1cwv_A Invasin; integrin-bind 22.5 49 0.0015 13.8 2.8 31 127-157 27-61 (98)
18 >2f7f_A Nicotinate phosphoribo 22.4 49 0.0015 13.8 2.7 23 123-145 9-32 (140)
19 >2cja_A Seryl-tRNA synthetase; 20.5 37 0.0011 14.6 0.9 30 101-134 57-86 (184)
No 1
>>1jiw_I Proteinase inhibitor; pseudomonas aeruginosa alkaline protease inhibitor, hydrolase/hyrolase inhibitor complex; 1.74A {Pseudomonas aeruginosa} (I:)
Probab=98.78 E-value=2e-08 Score=71.43 Aligned_cols=90 Identities=14% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCHHEEEEEEECCCCC--EEEEEEECCCCC--CCCCCCCC-CCCCCH--HCCCCEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 7011365788636897--368897136677--77145436-773000--0021003338718999828998799999548
Q gi|254781045|r 71 IRMGIIGAWKVSYRDV--DCKMILTLTRFK--KNFRGTAR-SCHGRL--ASLAAWNIIDEDSFELKNKSGQTIIVFYKTA 143 (162)
Q Consensus 71 ~r~sl~G~W~vs~~g~--sC~v~Lt~t~~~--~Gyra~~~-gC~g~L--~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~ 143 (162)
+.++|+|.|.+..+.+ .|++.|+.+... ++|+..-. .|...+ +...+|...+ +.+.|.++.|..|+.|-+.+
T Consensus 7 s~~~LaG~W~l~~~~~~~~C~l~L~~~~~~~~~~~~L~~~~~C~~~~l~~~P~~Wr~~p-dgi~L~~~~Gs~v~ff~r~~ 85 (106)
T 1jiw_I 7 SASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTP-AGIALLERGGLTLMLLGRQG 85 (106)
T ss_dssp CHHHHCEEEEEEETTSSCEEEEEEEEEEEGGGTEEEEEESGGGGGGTSSSCCCEEEEET-TEEEEECTTSCEEEEEEEEE
T ss_pred CHHHHCCEEEEECCCCCCEEEEEECCCCCCCCCCEECCCCCCHHHHHHCCCCEEEEECC-CEEEEECCCCCEEEEEECCC
T ss_conf 86890852578558998625889778868776511535773722576346860587649-98999879999988753078
Q ss_pred CCCEECCCCCCCCEEEEEC
Q ss_conf 9732201137896188739
Q gi|254781045|r 144 EQSFEGSFQGESDKVIISR 162 (162)
Q Consensus 144 ~grfeG~t~~~G~pisLsR 162 (162)
+++|+.... +|.+++|-|
T Consensus 86 ~g~~~~~~~-~G~~l~L~R 103 (106)
T 1jiw_I 86 EGDYRVQKG-DGGQLVLRR 103 (106)
T ss_dssp TTEEEEECS-SSCEEEEEE
T ss_pred CCCEEECCC-CCCEEEEEE
T ss_conf 871675169-996689985
No 2
>>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} (I:)
Probab=98.01 E-value=1.5e-05 Score=53.71 Aligned_cols=89 Identities=15% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCHHEEEEEEECCCCCEEEEEEECCCC-CCCCCCCCC-CCCCCH--HCCCCEEECCCCEEEEECCCCCEEEEEEECCCCC
Q ss_conf 701136578863689736889713667-777145436-773000--0021003338718999828998799999548973
Q gi|254781045|r 71 IRMGIIGAWKVSYRDVDCKMILTLTRF-KKNFRGTAR-SCHGRL--ASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQS 146 (162)
Q Consensus 71 ~r~sl~G~W~vs~~g~sC~v~Lt~t~~-~~Gyra~~~-gC~g~L--~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~~gr 146 (162)
+..+|.|.|.+..+.+.|+|.|..+.. .++|+.+-+ .|...+ ....+|.... |-+-|-|+.|..|+=| .-+..+
T Consensus 7 sas~LaGqWql~~~~~~C~i~L~~~~~e~~~~~L~gd~~Cl~~~l~~~p~gW~PtP-DGi~L~~~dGs~l~ff-sr~~e~ 84 (101)
T 1smp_I 7 SAAELSGQWVLSGAEQHCDIRLNTDVLDGTTWKLAGDTACLQKLLPEAPVGWRPTP-DGLTLTQADGSAVAFF-SRNRDR 84 (101)
T ss_dssp CHHHHCEEEEEECSSCEEEEEEEEEEEETTEEEEEECHHHHHHHSSSCCCEEEECS-SEEEEECTTSCEEEEE-EEETTE
T ss_pred CHHHHCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECC-CEEEEECCCCCEEEEE-EECCCC
T ss_conf 87892515466127543532816752678541125760427887456760374079-9889985999999884-205663
Q ss_pred EECCCCCCCCEEEEEC
Q ss_conf 2201137896188739
Q gi|254781045|r 147 FEGSFQGESDKVIISR 162 (162)
Q Consensus 147 feG~t~~~G~pisLsR 162 (162)
|+.++- +|.-+.|-|
T Consensus 85 Y~~~l~-~g~~l~L~r 99 (101)
T 1smp_I 85 YEHKLV-DGSVRTLKK 99 (101)
T ss_dssp EEEECT-TCCEEEEEE
T ss_pred CEEECC-CCCEEEEEE
T ss_conf 135349-998779985
No 3
>>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} (A:)
Probab=46.65 E-value=19 Score=16.25 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHCCCCEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 000210033387189998289987999995
Q gi|254781045|r 112 LASLAAWNIIDEDSFELKNKSGQTIIVFYK 141 (162)
Q Consensus 112 L~~i~aW~v~G~~vl~L~D~sG~~v~~l~~ 141 (162)
+.....|..-+.+.+.|+|..|+.|..+.-
T Consensus 114 ~~~~~~~~~g~d~~~~L~d~~G~~vd~~~~ 143 (151)
T 1ufg_A 114 WKAQNTWGCGSSLRTALINSTGEEVAMRKL 143 (151)
T ss_dssp ECSSSCSCCSSEEEEEEECSSSCEEEEEEE
T ss_pred EECCCCCCCCCCCEEEEECCCCCEEEEEEE
T ss_conf 744443247997589999999999999998
No 4
>>3gd0_A Laminaripentaose-producing beta-1,3-guluase (lphase); glycoside hydrolase, laminaripentaose-producing beta-1,3- glucnase; 1.62A {Streptomyces matensis} PDB: 3gd9_A* (A:208-263)
Probab=46.34 E-value=18 Score=16.41 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.7
Q ss_pred EECCCCEEEEECCCCCEEEEEEE
Q ss_conf 33387189998289987999995
Q gi|254781045|r 119 NIIDEDSFELKNKSGQTIIVFYK 141 (162)
Q Consensus 119 ~v~G~~vl~L~D~sG~~v~~l~~ 141 (162)
.|.| ++.++.|.+|.+|++|.|
T Consensus 35 RvsG-~~m~Ftn~sGavVtsFqk 56 (56)
T 3gd0_A 35 RVSG-GVLRFTDGSGAVVTTFQK 56 (56)
T ss_dssp EEET-TEEEEECTTSCEEEEECC
T ss_pred EEEC-CEEEECCCCCCCEEEECC
T ss_conf 9858-878873799852244079
No 5
>>2kts_A Heat shock protein HSLJ; NP_415897.1, JCSG, stress response, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=42.70 E-value=17 Score=16.60 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=37.8
Q ss_pred CCCHHEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC-C-----------HHCCCCEEECCCCEEEEECCCCCEEE
Q ss_conf 77011365788636897368897136677771454367730-0-----------00021003338718999828998799
Q gi|254781045|r 70 AIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHG-R-----------LASLAAWNIIDEDSFELKNKSGQTII 137 (162)
Q Consensus 70 ~~r~sl~G~W~vs~~g~sC~v~Lt~t~~~~Gyra~~~gC~g-~-----------L~~i~aW~v~G~~vl~L~D~sG~~v~ 137 (162)
.+=+.+.|.|++..+. |+.. ..-.+.+-|++ + |..+..|.+.+ +.|.|++..|..+.
T Consensus 42 ~gCN~~~g~~~~~~~~------l~~~----~~~sT~~~C~~~~~m~~E~~~~~~L~~~~~~~~~~-~~L~L~~~~g~~~f 110 (117)
T 2kts_A 42 SMCNRFSGEGKLSNGE------LTAK----GLAMTRMMCANPQLNELDNTISEMLKEGAQVDLTA-NQLTLATAKQTLTY 110 (117)
T ss_dssp CSSSCEEECCCCSSSE------ECCS----SEEECCCCCSSHHHHHHHHHHHHHHHHCEEEEECS-SEEEEECSSCEEEE
T ss_pred CCCCEEEEEEEEECCE------EEEC----CCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEC-CEEEEECCCCEEEE
T ss_conf 3563458989980999------9986----51101013799540279999999871485799989-99999889978999
Q ss_pred EEEE
Q ss_conf 9995
Q gi|254781045|r 138 VFYK 141 (162)
Q Consensus 138 ~l~~ 141 (162)
.+.+
T Consensus 111 ~~~~ 114 (117)
T 2kts_A 111 KLAD 114 (117)
T ss_dssp ECCC
T ss_pred EEHH
T ss_conf 9845
No 6
>>3cnc_A Fiber protein; adenovirus fiber KNOB, viral protein; 2.40A {Human adenovirus 16} (A:)
Probab=40.55 E-value=20 Score=16.23 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=6.9
Q ss_pred EEEEEECCCCCCCCC
Q ss_conf 688971366777714
Q gi|254781045|r 88 CKMILTLTRFKKNFR 102 (162)
Q Consensus 88 C~v~Lt~t~~~~Gyr 102 (162)
||++|.|||-++---
T Consensus 51 ~KLtL~LTK~Gs~Vl 65 (220)
T 3cnc_A 51 CKLTLVLVKNGGLIN 65 (220)
T ss_dssp EEEEEEEEEETTEEE
T ss_pred CEEEEEEECCCCEEE
T ss_conf 569999983089899
No 7
>>3di4_A Uncharacterized protein DUF1989; YP_165628.1, protein of unknown function (DUF1989), structural genomics; 1.60A {Silicibacter pomeroyi dss-3} (A:28-286)
Probab=38.25 E-value=26 Score=15.45 Aligned_cols=13 Identities=0% Similarity=-0.105 Sum_probs=5.7
Q ss_pred CEEEEEEECCCCC
Q ss_conf 8799999548973
Q gi|254781045|r 134 QTIIVFYKTAEQS 146 (162)
Q Consensus 134 ~~v~~l~~s~~gr 146 (162)
++++.+.+--.|+
T Consensus 94 Rpl~tIv~DT~G~ 106 (259)
T 3di4_A 94 RPXATIIEDTLGW 106 (259)
T ss_dssp CEEEEEEEETTTT
T ss_pred CEEEEEEECCCCC
T ss_conf 5049998447776
No 8
>>1h7z_A Adenovirus fibre protein; cell receptor recognition, receptor; 1.6A {Human adenovirus type 3} (A:)
Probab=34.72 E-value=26 Score=15.43 Aligned_cols=13 Identities=15% Similarity=-0.051 Sum_probs=6.6
Q ss_pred CCCHHEEEEEEEC
Q ss_conf 7701136578863
Q gi|254781045|r 70 AIRMGIIGAWKVS 82 (162)
Q Consensus 70 ~~r~sl~G~W~vs 82 (162)
..|..++|.=-+.
T Consensus 121 ~~~n~I~~~~yl~ 133 (194)
T 1h7z_A 121 HNENYIFGQCYYK 133 (194)
T ss_dssp CGGGEEEEEEEEE
T ss_pred CCCCEEEEEEEEE
T ss_conf 6764488999996
No 9
>>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} (A:)
Probab=32.27 E-value=33 Score=14.86 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEEE
Q ss_conf 8718999828998799999548973220113789618873
Q gi|254781045|r 122 DEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIIS 161 (162)
Q Consensus 122 G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisLs 161 (162)
|++-++|+|.+|++... -....|.|++-.....|.|.
T Consensus 51 ~~d~Y~F~D~tG~I~Ve---Id~~~w~G~~v~p~~~VrI~ 87 (109)
T 1nnx_A 51 SDDLYVFKDASGTINVD---IDHKRWNGVTVTPKDTVEIQ 87 (109)
T ss_dssp ETTEEEEEETTEEEEEE---CCGGGSTTCCCCTTSCEEEE
T ss_pred CCCEEEEECCCCCEEEE---ECHHHCCCCCCCCCCEEEEE
T ss_conf 89528998899649999---78455389666999989999
No 10
>>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A* (A:1-113)
Probab=30.13 E-value=36 Score=14.64 Aligned_cols=86 Identities=19% Similarity=0.334 Sum_probs=50.2
Q ss_pred CCCHHEEEEEEECCCCCEEE-EEEECCCCCCC-CCCCCC--CCCC---CHHCCCCEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 77011365788636897368-89713667777-145436--7730---00002100333871899982899879999954
Q gi|254781045|r 70 AIRMGIIGAWKVSYRDVDCK-MILTLTRFKKN-FRGTAR--SCHG---RLASLAAWNIIDEDSFELKNKSGQTIIVFYKT 142 (162)
Q Consensus 70 ~~r~sl~G~W~vs~~g~sC~-v~Lt~t~~~~G-yra~~~--gC~g---~L~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s 142 (162)
..-.++.|.|+=--==.+|. |..++|=...| |..... +..+ .+...+.|++.| +.|.|.|..|+. +.|+.
T Consensus 16 ~~~~~~~gtY~G~LPCAdC~GI~t~LtL~~Dgty~l~~~Yl~~~~~~~~~~~~G~w~~~~-~~i~l~~~~~~~--~~f~v 92 (113)
T 2z4i_A 16 AELKPXPQSWRGVLPCADCEGIETSLFLEKDGTWVXNERYLGAREEPSSFASYGTWARTA-DKLVLTDSKGEK--SYYRA 92 (113)
T ss_dssp ----CCCCEEEEEEEETTEEEEEEEEEECTTSEEEEEEEEETCCSSSSEEEEEEEEECCS-SEEEEEETTSCE--EEEEE
T ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEEEEC-CEEEEECCCCCE--EEEEE
T ss_conf 668867864736977889998478999869994999998747789996166368998009-989993699987--68897
Q ss_pred CCCCEECCCCCCCCEEE
Q ss_conf 89732201137896188
Q gi|254781045|r 143 AEQSFEGSFQGESDKVI 159 (162)
Q Consensus 143 ~~grfeG~t~~~G~pis 159 (162)
..+..+=.-. +|++|.
T Consensus 93 ~~~~L~~ld~-~G~~i~ 108 (113)
T 2z4i_A 93 KGDALEXLDR-EGNPIE 108 (113)
T ss_dssp ETTEEEEECT-TSCBCE
T ss_pred CCCEEEEECC-CCCCCC
T ss_conf 3999998878-998776
No 11
>>1kac_A Protein (fiber KNOB protein); adhesion protein receptor complex, viral protein/receptor complex; 2.60A {Human adenovirus 12} (A:)
Probab=29.65 E-value=36 Score=14.59 Aligned_cols=42 Identities=7% Similarity=0.009 Sum_probs=15.7
Q ss_pred CCCCCCCCCHHEEEEEEEC-CCCCEEEEEEE--CCCCCCCCCCCC
Q ss_conf 7632237701136578863-68973688971--366777714543
Q gi|254781045|r 64 PSKDNNAIRMGIIGAWKVS-YRDVDCKMILT--LTRFKKNFRGTA 105 (162)
Q Consensus 64 p~~a~~~~r~sl~G~W~vs-~~g~sC~v~Lt--~t~~~~Gyra~~ 105 (162)
|-+.....|.-++|.=-+. .-++.+.+..+ .+....+|.-..
T Consensus 115 P~~~~s~~~n~i~~~~yl~g~~~~pi~~~i~~N~~~~~~~YSitF 159 (185)
T 1kac_A 115 PRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNGITSLNGYSLTF 159 (185)
T ss_dssp CGGGTTSGGGEEEEEEEGGGCTTSEEEEEEEESSSCCSSCEEEEE
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 898788743028999998898889889999967888884278999
No 12
>>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 2kpw_A (A:)
Probab=29.62 E-value=36 Score=14.58 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.0
Q ss_pred HCCCCEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 0021003338718999828998799999
Q gi|254781045|r 113 ASLAAWNIIDEDSFELKNKSGQTIIVFY 140 (162)
Q Consensus 113 ~~i~aW~v~G~~vl~L~D~sG~~v~~l~ 140 (162)
..-..|...+.+.+.|+|.+|+.|..+.
T Consensus 89 ~~~~~~~~~~~~~~~L~d~~g~~vd~~~ 116 (123)
T 3hn9_A 89 KNQNSWGTGEDVKVILKNSQGEEVAQRS 116 (123)
T ss_dssp TTCCCCCSSSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 0541134799748999999999988887
No 13
>>3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum} (A:69-112,A:151-165)
Probab=29.08 E-value=20 Score=16.19 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=18.7
Q ss_pred CEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 003338718999828998799999548
Q gi|254781045|r 117 AWNIIDEDSFELKNKSGQTIIVFYKTA 143 (162)
Q Consensus 117 aW~v~G~~vl~L~D~sG~~v~~l~~s~ 143 (162)
-|++++ -++.|..|+.|++|.++.
T Consensus 2 EWnIrd---AyI~~~~G~rIvDF~~~N 25 (59)
T 3k9t_A 2 EWNIKD---AYVRNSKGEKVIDFKENN 25 (59)
T ss_dssp EEEEEE---EEEECTTSCEEEETTTCG
T ss_pred CEEEEE---EEEECCCCCEEEECCCCC
T ss_conf 537725---999879998899855683
No 14
>>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} (A:)
Probab=26.25 E-value=42 Score=14.22 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=22.1
Q ss_pred HCCCCEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 00210033387189998289987999995
Q gi|254781045|r 113 ASLAAWNIIDEDSFELKNKSGQTIIVFYK 141 (162)
Q Consensus 113 ~~i~aW~v~G~~vl~L~D~sG~~v~~l~~ 141 (162)
..-..|.....+.+.|+|..|+.|..+.-
T Consensus 84 ~~~~~~~~~~~d~v~L~d~~G~~vd~~~~ 112 (121)
T 1ifr_A 84 KAQNTWGCGNSLRTALINSTGEEVAMRKL 112 (121)
T ss_dssp TTCSCCCCSSCEEEEEECTTSCEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 30255034327889887063188999976
No 15
>>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} (A:)
Probab=25.10 E-value=44 Score=14.09 Aligned_cols=37 Identities=11% Similarity=0.455 Sum_probs=25.8
Q ss_pred CCCEEEEEEECCCCCCCCCCCCC-CCCCCHHCCCCEEEC
Q ss_conf 89736889713667777145436-773000002100333
Q gi|254781045|r 84 RDVDCKMILTLTRFKKNFRGTAR-SCHGRLASLAAWNII 121 (162)
Q Consensus 84 ~g~sC~v~Lt~t~~~~Gyra~~~-gC~g~L~~i~aW~v~ 121 (162)
....|.+.-+...|++||.+.-. .=.++ ..|..|.|.
T Consensus 4 ~~~~~~~~~~v~~W~~G~~~~i~vtN~~~-~~i~~W~v~ 41 (110)
T 1exg_A 4 GPAGCQVLWGVNQWNTGFTANVTVKNTSS-APVDGWTLT 41 (110)
T ss_dssp CCCCEEEECCEEESSSEEEEEEEEEECSS-SCEESEEEE
T ss_pred CCCCEEEEEEECCCCCCEEEEEEEEECCC-CCCCCCEEE
T ss_conf 99633999997538997289999994999-854677999
No 16
>>1qiu_A Adenovirus fibre; fibre protein, triple beta-spiral; 2.4A {Human adenovirus 2} (A:76-264)
Probab=22.87 E-value=43 Score=14.15 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=9.8
Q ss_pred CCCHHEEEEEEEC-CCCCEEEEEEEC
Q ss_conf 7701136578863-689736889713
Q gi|254781045|r 70 AIRMGIIGAWKVS-YRDVDCKMILTL 94 (162)
Q Consensus 70 ~~r~sl~G~W~vs-~~g~sC~v~Lt~ 94 (162)
..+.-++|.=-+. ...+.+.+..++
T Consensus 118 ~~~n~i~~~~yl~g~~~~pv~i~it~ 143 (189)
T 1qiu_A 118 TAKNNIVSQVYLHGDKTKPMILTITL 143 (189)
T ss_dssp CGGGEEEEEEEGGGCTTSEEEEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCEEEEEEE
T ss_conf 75303789999889888738999995
No 17
>>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} (A:105-202)
Probab=22.52 E-value=49 Score=13.78 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=14.2
Q ss_pred EEECCCCCEE----EEEEECCCCCEECCCCCCCCE
Q ss_conf 9982899879----999954897322011378961
Q gi|254781045|r 127 ELKNKSGQTI----IVFYKTAEQSFEGSFQGESDK 157 (162)
Q Consensus 127 ~L~D~sG~~v----~~l~~s~~grfeG~t~~~G~p 157 (162)
.++|..|+++ ..|.-.+++.+.+.+.++|+.
T Consensus 27 ~v~D~~Gnpv~~~~V~~~~~g~~~~~~~t~~~G~a 61 (98)
T 1cwv_A 27 ELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTY 61 (98)
T ss_dssp ECBBTTSCBCCSCCEEEEESSSEECCCEECSSSEE
T ss_pred EEECCCCCEECCCEEEEEECCCCEEEEEECCCCEE
T ss_conf 99858898303517887504783025887789559
No 18
>>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI, protein structure initiative; 2.00A {Enterococcus faecalis V583} (A:355-494)
Probab=22.43 E-value=49 Score=13.77 Aligned_cols=23 Identities=0% Similarity=0.039 Sum_probs=16.4
Q ss_pred CCEEEEEC-CCCCEEEEEEECCCC
Q ss_conf 71899982-899879999954897
Q gi|254781045|r 123 EDSFELKN-KSGQTIIVFYKTAEQ 145 (162)
Q Consensus 123 ~~vl~L~D-~sG~~v~~l~~s~~g 145 (162)
|+|.|++| .+|..++++---.+.
T Consensus 9 KqVyR~yd~~~G~~~~D~I~l~dE 32 (140)
T 2f7f_A 9 KQVWRITRKSDKKSEGDYVTLWNE 32 (140)
T ss_dssp EEEEEEEETTTCCEEEEEEEETTC
T ss_pred EEEEEEECCCCCEEEEEEEEECCC
T ss_conf 389998638888055579973477
No 19
>>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A (A:1-184)
Probab=20.55 E-value=37 Score=14.56 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCHHCCCCEEECCCCEEEEECCCCC
Q ss_conf 1454367730000021003338718999828998
Q gi|254781045|r 101 FRGTARSCHGRLASLAAWNIIDEDSFELKNKSGQ 134 (162)
Q Consensus 101 yra~~~gC~g~L~~i~aW~v~G~~vl~L~D~sG~ 134 (162)
-|+.+.|| -+.|.+|++.|++ +.|.=.||+
T Consensus 57 ~KGvPeGe---~aKI~sw~~~g~~-L~L~I~SGr 86 (184)
T 2cja_A 57 TRGAPEGQ---GAKVTEWKLGEDR-IELTLQSGR 86 (184)
T ss_dssp GTTCSSSC---CCEEEEECC---C-EEEEEEECS
T ss_pred CCCCCCCC---EEEEEEECCCCCE-EEEEEECCH
T ss_conf 25799872---5788741577763-566642440
Done!