Query gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 57 out of 59
Neff 4.3
Searched_HMMs 13730
Date Wed Jun 1 11:23:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781045.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jiwi_ b.61.2.1 (I:) Metallop 99.1 1.8E-10 1.3E-14 81.6 7.4 90 71-162 7-103 (105)
2 d1smpi_ b.61.2.1 (I:) Metallop 97.5 0.00012 8.6E-09 45.9 6.8 89 71-162 7-99 (100)
3 d1qhva_ b.21.1.1 (A:) Adenovir 44.8 7 0.00051 16.6 2.6 52 84-136 28-81 (195)
4 d1kaca_ b.21.1.1 (A:) Adenovir 43.3 8.1 0.00059 16.2 2.7 50 85-135 23-74 (185)
5 d1knba_ b.21.1.1 (A:) Adenovir 38.9 9.3 0.00068 15.8 2.5 12 70-81 116-127 (186)
6 d2j2ja1 b.21.1.1 (A:361-542) A 33.9 13 0.00091 15.0 2.5 15 85-99 20-34 (182)
7 d1nnxa_ b.40.10.1 (A:) Hypothe 33.4 13 0.00093 15.0 2.6 37 122-161 50-86 (106)
8 d1exha_ b.2.2.1 (A:) Exo-1,4-b 32.6 8.4 0.00061 16.1 1.4 38 82-120 2-40 (110)
9 d1ifra_ b.1.16.1 (A:) Lamin A/ 22.4 20 0.0015 13.8 3.6 28 113-140 84-111 (113)
10 d1jmca1 b.40.4.3 (A:183-298) R 21.2 21 0.0015 13.6 1.9 35 126-161 42-76 (116)
No 1
>d1jiwi_ b.61.2.1 (I:) Metalloprotease inhibitor {Pseudomonas aeruginosa, aprin [TaxId: 287]}
Probab=99.07 E-value=1.8e-10 Score=81.56 Aligned_cols=90 Identities=14% Similarity=0.364 Sum_probs=78.4
Q ss_pred CCHHEEEEEEECCCCC--EEEEEEECCCCCCC--CCCCCC-CCCCCH--HCCCCEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 7011365788636897--36889713667777--145436-773000--0021003338718999828998799999548
Q gi|254781045|r 71 IRMGIIGAWKVSYRDV--DCKMILTLTRFKKN--FRGTAR-SCHGRL--ASLAAWNIIDEDSFELKNKSGQTIIVFYKTA 143 (162)
Q Consensus 71 ~r~sl~G~W~vs~~g~--sC~v~Lt~t~~~~G--yra~~~-gC~g~L--~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~ 143 (162)
+..+|+|.|.++.+.+ .|.|.|+.+.-.+| |+.... .|...+ +.+.+|...+ +.+.|.++.|+.|+.|.+..
T Consensus 7 s~~~laG~W~l~~~~~~~~C~ltL~~~~~~~g~~~~l~~~~~C~~~~l~~~p~~W~p~p-dgi~L~~a~Gs~l~ff~r~~ 85 (105)
T d1jiwi_ 7 SASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTP-AGIALLERGGLTLMLLGRQG 85 (105)
T ss_dssp CHHHHCEEEEEEETTSSCEEEEEEEEEEEGGGTEEEEEESGGGGGGTSSSCCCEEEEET-TEEEEECTTSCEEEEEEEEE
T ss_pred CHHHHCCEEEEECCCCCCEEEEEECCCCCCCCCCEECCCCCCHHHHHHCCCCCEEEECC-CEEEEECCCCCEEEEEECCC
T ss_conf 87894552467438888600778468747887502325885634687457871485669-98999769999887720156
Q ss_pred CCCEECCCCCCCCEEEEEC
Q ss_conf 9732201137896188739
Q gi|254781045|r 144 EQSFEGSFQGESDKVIISR 162 (162)
Q Consensus 144 ~grfeG~t~~~G~pisLsR 162 (162)
+++|++.+. +|.++.|-|
T Consensus 86 ~g~y~~~~~-~g~~l~L~R 103 (105)
T d1jiwi_ 86 EGDYRVQKG-DGGQLVLRR 103 (105)
T ss_dssp TTEEEEECS-SSCEEEEEE
T ss_pred CCEEEEECC-CCCEEEEEE
T ss_conf 870576518-997689874
No 2
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=97.54 E-value=0.00012 Score=45.87 Aligned_cols=89 Identities=15% Similarity=0.403 Sum_probs=73.9
Q ss_pred CCHHEEEEEEECCCCCEEEEEEECCCC-CCCCCCCCC-CCCCCH--HCCCCEEECCCCEEEEECCCCCEEEEEEECCCCC
Q ss_conf 701136578863689736889713667-777145436-773000--0021003338718999828998799999548973
Q gi|254781045|r 71 IRMGIIGAWKVSYRDVDCKMILTLTRF-KKNFRGTAR-SCHGRL--ASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQS 146 (162)
Q Consensus 71 ~r~sl~G~W~vs~~g~sC~v~Lt~t~~-~~Gyra~~~-gC~g~L--~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~~gr 146 (162)
...+|.|.|.++.+.+-|.+.|..+.- .+.|+..-+ .|...+ ....+|.-.= |-+-|.|+.|..|+-|-+..++
T Consensus 7 ~~s~LaGqWql~~a~q~C~~~l~~~~~~~~~~~l~Gd~aCl~~wLg~~p~gW~PtP-DGiaLt~~~Gs~i~ffsR~~eg- 84 (100)
T d1smpi_ 7 SAAELSGQWVLSGAEQHCDIRLNTDVLDGTTWKLAGDTACLQKLLPEAPVGWRPTP-DGLTLTQADGSAVAFFSRNRDR- 84 (100)
T ss_dssp CHHHHCEEEEEECSSCEEEEEEEEEEEETTEEEEEECHHHHHHHSSSCCCEEEECS-SEEEEECTTSCEEEEEEEETTE-
T ss_pred CHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC-CEEEEECCCCCEEEEEEECCCC-
T ss_conf 86783433342253000553235644546432126618899998566885504489-8377755889868766305753-
Q ss_pred EECCCCCCCCEEEEEC
Q ss_conf 2201137896188739
Q gi|254781045|r 147 FEGSFQGESDKVIISR 162 (162)
Q Consensus 147 feG~t~~~G~pisLsR 162 (162)
|++++- +|.-|.|-|
T Consensus 85 Y~~~l~-~g~~l~L~R 99 (100)
T d1smpi_ 85 YEHKLV-DGSVRTLKK 99 (100)
T ss_dssp EEEECT-TCCEEEEEE
T ss_pred EEEECC-CCCEEEEEC
T ss_conf 257708-997888745
No 3
>d1qhva_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human adenovirus type 2 [TaxId: 10515]}
Probab=44.81 E-value=7 Score=16.56 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCC--CCCCCCHHCCCCEEECCCCEEEEECCCCCEE
Q ss_conf 8973688971366777714543--6773000002100333871899982899879
Q gi|254781045|r 84 RDVDCKMILTLTRFKKNFRGTA--RSCHGRLASLAAWNIIDEDSFELKNKSGQTI 136 (162)
Q Consensus 84 ~g~sC~v~Lt~t~~~~Gyra~~--~gC~g~L~~i~aW~v~G~~vl~L~D~sG~~v 136 (162)
....|+++|.|||-|+---|.- .+-.|.+..|.. ..+--++..+.|+.|.-+
T Consensus 28 ~~~D~KLtL~LTK~G~~Vlg~vsl~~v~g~~~~i~~-t~~s~~v~L~FD~~G~Ll 81 (195)
T d1qhva_ 28 SDNDCKFTLVLTKCGSQVLATVAALAVSGDLSSMTG-TVASVSIFLRFDQNGVLM 81 (195)
T ss_dssp STTCEEEEEEEEEETTEEEEEEEEEECSCCTGGGCS-SSSEEEEEEEECTTSCBC
T ss_pred CCCCCEEEEEEEECCCEEEEEEEEEEECCCEEECCC-CCEEEEEEEEECCCCCCC
T ss_conf 179826999999008989999999985474066378-835799999988988797
No 4
>d1kaca_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human adenovirus type 12 [TaxId: 28282]}
Probab=43.33 E-value=8.1 Score=16.20 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCEEEEEEECCCCCCCCCCCC--CCCCCCHHCCCCEEECCCCEEEEECCCCCE
Q ss_conf 973688971366777714543--677300000210033387189998289987
Q gi|254781045|r 85 DVDCKMILTLTRFKKNFRGTA--RSCHGRLASLAAWNIIDEDSFELKNKSGQT 135 (162)
Q Consensus 85 g~sC~v~Lt~t~~~~Gyra~~--~gC~g~L~~i~aW~v~G~~vl~L~D~sG~~ 135 (162)
...|+++|.|||-|+---|.- .+-.|.+..|..= .+--++..+.|+.|.-
T Consensus 23 ~~D~KLtL~LTK~Gs~Vlgtvsl~~v~g~~~~i~~t-~~s~~i~L~FD~~G~L 74 (185)
T d1kaca_ 23 ELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQST-TTTVGVHLVFDEQGRL 74 (185)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEEEECSGGGGSCCTT-CCEEEEEEEECTTSCB
T ss_pred CCCCEEEEEEEEECCEEEEEEEEEEECCCEEEECCC-CEEEEEEEEECCCCCC
T ss_conf 898369999990099899999999853640771688-3589999998899989
No 5
>d1knba_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human adenovirus type 5 [TaxId: 28285]}
Probab=38.93 E-value=9.3 Score=15.82 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=4.7
Q ss_pred CCCHHEEEEEEE
Q ss_conf 770113657886
Q gi|254781045|r 70 AIRMGIIGAWKV 81 (162)
Q Consensus 70 ~~r~sl~G~W~v 81 (162)
..|+-+++.=-+
T Consensus 116 ~~~n~i~~~~yl 127 (186)
T d1knba_ 116 TAKSNIVSQVYL 127 (186)
T ss_dssp SGGGEEEEEEEB
T ss_pred CCCCEEEEEEEE
T ss_conf 644218999998
No 6
>d2j2ja1 b.21.1.1 (A:361-542) Adenovirus fiber protein "knob" domain {Canine adenovirus 2 [TaxId: 10514]}
Probab=33.88 E-value=13 Score=15.02 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=7.6
Q ss_pred CCEEEEEEECCCCCC
Q ss_conf 973688971366777
Q gi|254781045|r 85 DVDCKMILTLTRFKK 99 (162)
Q Consensus 85 g~sC~v~Lt~t~~~~ 99 (162)
...|+++|.|||-|+
T Consensus 20 ~~D~KLtL~LTK~Gs 34 (182)
T d2j2ja1 20 TPVIRCFICLTRDSN 34 (182)
T ss_dssp EEEEEEEEEEEECSS
T ss_pred CCCCEEEEEEECCCC
T ss_conf 898189999982399
No 7
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}
Probab=33.39 E-value=13 Score=14.97 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEEE
Q ss_conf 8718999828998799999548973220113789618873
Q gi|254781045|r 122 DEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIIS 161 (162)
Q Consensus 122 G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisLs 161 (162)
|+|.++|+|.+|++.... ....|.|+.-..+..|.|.
T Consensus 50 ~~d~Y~F~D~TG~I~VeI---d~~~w~g~~v~p~~kV~i~ 86 (106)
T d1nnxa_ 50 SDDLYVFKDASGTINVDI---DHKRWNGVTVTPKDTVEIQ 86 (106)
T ss_dssp ETTEEEEEETTEEEEEEC---CGGGSTTCCCCTTSCEEEE
T ss_pred CCCEEEEECCCCCEEEEE---CHHHCCCCCCCCCCEEEEE
T ss_conf 895389978987699997---8444289556999989999
No 8
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}
Probab=32.64 E-value=8.4 Score=16.10 Aligned_cols=38 Identities=13% Similarity=0.451 Sum_probs=25.0
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCC-CCCCCHHCCCCEEE
Q ss_conf 3689736889713667777145436-77300000210033
Q gi|254781045|r 82 SYRDVDCKMILTLTRFKKNFRGTAR-SCHGRLASLAAWNI 120 (162)
Q Consensus 82 s~~g~sC~v~Lt~t~~~~Gyra~~~-gC~g~L~~i~aW~v 120 (162)
+.+...|.+..+...|.+||-+.-. .=.+. ..|..|.|
T Consensus 2 ~~~p~~c~v~y~~n~W~~Gf~~~vtVtN~~~-~~~~gW~v 40 (110)
T d1exha_ 2 SSGPAGCQVLWGVNQWNTGFTANVTVKNTSS-APVDGWTL 40 (110)
T ss_dssp CSCCCCEEEECCEEECSSCEEEEEEEEECSS-SCEESEEE
T ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEEECCC-CCCCCCEE
T ss_conf 8899544999997647998689999994999-84147399
No 9
>d1ifra_ b.1.16.1 (A:) Lamin A/C globular tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.39 E-value=20 Score=13.76 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=21.3
Q ss_pred HCCCCEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 0021003338718999828998799999
Q gi|254781045|r 113 ASLAAWNIIDEDSFELKNKSGQTIIVFY 140 (162)
Q Consensus 113 ~~i~aW~v~G~~vl~L~D~sG~~v~~l~ 140 (162)
.....|..-+....+|+|..|+.|+...
T Consensus 84 ~~~~~wg~g~~~~t~L~n~~Ge~vAt~~ 111 (113)
T d1ifra_ 84 KAQNTWGCGNSLRTALINSTGEEVAMRK 111 (113)
T ss_dssp TTCSCCCCSSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 4541013899749999999999999999
No 10
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.22 E-value=21 Score=13.61 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=22.9
Q ss_pred EEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEEE
Q ss_conf 999828998799999548973220113789618873
Q gi|254781045|r 126 FELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIIS 161 (162)
Q Consensus 126 l~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisLs 161 (162)
+.|.|..|+.-+.+.......|..... +|+-+.++
T Consensus 42 ~~l~De~G~I~~t~~~~~~~~f~~~l~-~G~vy~i~ 76 (116)
T d1jmca1 42 LELVDESGEIRATAFNEQVDKFFPLIE-VNKVYYFS 76 (116)
T ss_dssp EEEECSSCEEEEEEEHHHHHHHGGGCC-TTCEEEEE
T ss_pred EEEECCCCCEEEEECHHHHHHHHHHCC-CCCEEEEC
T ss_conf 999908997999986366322574015-58799990
Done!