RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein
omp19 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)



>gnl|CDD|131967 TIGR02921, PEP_integral, PEP-CTERM family integral membrane
           protein.  Members of this protein family, found in three
           different species so far, have a PEP-CTERM sequence at
           the carboxyl-terminus (see model TIGR02595), but are
           unusual among PEP-CTERM proteins in having multiple
           predicted transmembrane segments. The function is
           unknown. It is proposed that a member of the EpsH
           family, to be designated exosortase (see TIGR02602),
           recognizes and cleaves PEP-CTERM proteins in a manner
           analogous to the cleavage of LPXTG proteins by sortase
           (see Haft, et al., 2006).
          Length = 952

 Score = 29.2 bits (65), Expect = 0.49
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 40  PSVESEILLPPIPEEEFD-QDDISVPSKDNNAIRMGIIGAWKVSYR 84
           P  E+  LL    + + D +  IS+P ++++AIR G+I A+   YR
Sbjct: 269 PQQEAFELLAFADKNDQDGETIISIPREEHDAIRKGLINAYLAPYR 314


>gnl|CDD|152267 pfam11831, DUF3351, Domain of unknown function (DUF3351).  This
           domain is functionally uncharacterized. This domain is
           found in bacteria. This presumed domain is typically
           between 73 to 279 amino acids in length.
          Length = 377

 Score = 28.5 bits (64), Expect = 0.84
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 37  SLP-PSVESEILLPPIPEEEFDQDDI 61
           SLP P  E E+ LP   EEE ++ + 
Sbjct: 150 SLPKPKNEYELELPEEEEEEPEEMEE 175


>gnl|CDD|178255 PLN02649, PLN02649, glucose-6-phosphate isomerase.
          Length = 560

 Score = 27.7 bits (62), Expect = 1.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 57  DQDDISVPSKDNNAIRMGIIGAWKVSYRDVDCKMIL 92
           D+   + P K+N  + +G++  W  S+     + IL
Sbjct: 307 DEHFRTAPLKENIPVLLGLLSVWNSSFLGYPARAIL 342


>gnl|CDD|178640 PLN03091, PLN03091, hypothetical protein; Provisional.
          Length = 459

 Score = 27.6 bits (61), Expect = 1.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 38  LPPSVESEILLPPI---PEEEFDQDDISVPSKDNNAIR 72
           LPPSV S  L  P+   P      D+ S+PS   N +R
Sbjct: 288 LPPSVTSSFLPTPMSYKPSISLPSDNPSIPSFTVNGVR 325


>gnl|CDD|181887 PRK09472, ftsA, cell division protein FtsA; Reviewed.
          Length = 420

 Score = 25.9 bits (57), Expect = 5.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 41  SVESEILLPPIPEEEFDQDDI 61
           S ++EI + PI EEE  Q+D+
Sbjct: 89  SCQNEIGMVPISEEEVTQEDV 109


>gnl|CDD|152392 pfam11957, efThoc1, THO complex subunit 1 transcription elongation
           factor.  The THO complex is a nuclear complex that is
           required for transcription elongation through genes
           containing tandemly repeated DNA sequences. The THO
           complex is also part of the TREX (TRanscription EXport)
           complex that is involved in coupling transcription to
           export of mRNAs to the cytoplasm.
          Length = 464

 Score = 25.5 bits (56), Expect = 6.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 32  KKPEISLPPSVESEILLPPIPEEEFDQDDISVPSKDNNAIRMGIIGAWKV 81
           KKP+    PS+ES +    I E+EFD DD     +   AI       W+ 
Sbjct: 408 KKPQRYRVPSLESFL--EGIKEDEFDIDDAQRKEEKKEAIEAKASKTWRA 455


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,695,809
Number of extensions: 163683
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 8
Length of query: 162
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,136,185
Effective search space: 314350060
Effective search space used: 314350060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)