RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus str. psy62] (162 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.8 bits (90), Expect = 5e-04 Identities = 34/158 (21%), Positives = 50/158 (31%), Gaps = 65/158 (41%) Query: 14 LTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLP------------------PIPEEE 55 LTL SHG S+E +L+P P P E Sbjct: 9 LTL-SHG--------------------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEG 47 Query: 56 FDQDD--ISVPSKDNNAIR-MGIIGAWKV------SYRDVDCKMILTLTRFKKNF-RGTA 105 F DD + + +G + + V + V + L LT F+ + G Sbjct: 48 FAADDEPTTPAEL---VGKFLGYV-SSLVEPSKVGQFDQV---LNLCLTEFENCYLEG-- 98 Query: 106 RSCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTA 143 H A L + D+ +K K +I Y TA Sbjct: 99 NDIHALAAKLLQ----ENDTTLVKTKE---LIKNYITA 129 Score = 29.9 bits (67), Expect = 0.31 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 28/69 (40%) Query: 2 HFYRFILLNLYMLTLFSHGC-TQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60 F+ + + +L F G + P SLPPS IL +D Sbjct: 291 SFFVSVRKAITVL--FFIGVRCYEAY-------PNTSLPPS----IL----------EDS 327 Query: 61 IS----VPS 65 + VPS Sbjct: 328 LENNEGVPS 336 >2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341 Score = 26.7 bits (58), Expect = 2.3 Identities = 3/52 (5%), Positives = 12/52 (23%) Query: 107 SCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKV 158 L ++ + ++ G + + +G + Sbjct: 268 LLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQK 319 >3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells, receptor, alternative splicing, glycoprotein, lectin, signal-anchor, transmembrane; 2.50A {Homo sapiens} PDB: 3cdg_K 3cii_H Length = 120 Score = 25.5 bits (55), Expect = 5.0 Identities = 8/57 (14%), Positives = 23/57 (40%) Query: 94 LTRFKKNFRGTARSCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGS 150 + + ++ + + +C + +SL + + +E F I VF ++ + Sbjct: 21 IGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSWIGVFRNSSHHPWVTM 77 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.139 0.417 Gapped Lambda K H 0.267 0.0519 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,459,445 Number of extensions: 64556 Number of successful extensions: 184 Number of sequences better than 10.0: 1 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 6 Length of query: 162 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 77 Effective length of database: 3,632,490 Effective search space: 279701730 Effective search space used: 279701730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.7 bits)