RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein
omp19 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 34/158 (21%), Positives = 50/158 (31%), Gaps = 65/158 (41%)

Query: 14  LTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLP------------------PIPEEE 55
           LTL SHG                    S+E  +L+P                  P P E 
Sbjct: 9   LTL-SHG--------------------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEG 47

Query: 56  FDQDD--ISVPSKDNNAIR-MGIIGAWKV------SYRDVDCKMILTLTRFKKNF-RGTA 105
           F  DD   +         + +G + +  V       +  V   + L LT F+  +  G  
Sbjct: 48  FAADDEPTTPAEL---VGKFLGYV-SSLVEPSKVGQFDQV---LNLCLTEFENCYLEG-- 98

Query: 106 RSCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTA 143
              H   A L      + D+  +K K    +I  Y TA
Sbjct: 99  NDIHALAAKLLQ----ENDTTLVKTKE---LIKNYITA 129



 Score = 29.9 bits (67), Expect = 0.31
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 28/69 (40%)

Query: 2   HFYRFILLNLYMLTLFSHGC-TQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60
            F+  +   + +L  F  G      +       P  SLPPS    IL          +D 
Sbjct: 291 SFFVSVRKAITVL--FFIGVRCYEAY-------PNTSLPPS----IL----------EDS 327

Query: 61  IS----VPS 65
           +     VPS
Sbjct: 328 LENNEGVPS 336


>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
           oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
          Length = 341

 Score = 26.7 bits (58), Expect = 2.3
 Identities = 3/52 (5%), Positives = 12/52 (23%)

Query: 107 SCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKV 158
                L         ++ +   ++  G  + +             +G   + 
Sbjct: 268 LLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQK 319


>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
           receptor, alternative splicing, glycoprotein, lectin,
           signal-anchor, transmembrane; 2.50A {Homo sapiens} PDB:
           3cdg_K 3cii_H
          Length = 120

 Score = 25.5 bits (55), Expect = 5.0
 Identities = 8/57 (14%), Positives = 23/57 (40%)

Query: 94  LTRFKKNFRGTARSCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGS 150
           + + ++ +  +  +C  + +SL + +  +E  F         I VF  ++   +   
Sbjct: 21  IGKERRTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSWIGVFRNSSHHPWVTM 77


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,459,445
Number of extensions: 64556
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 6
Length of query: 162
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 77
Effective length of database: 3,632,490
Effective search space: 279701730
Effective search space used: 279701730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)