RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein
omp19 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)



>d2b0aa1 c.8.8.1 (A:1-186) Hypothetical protein MJ0783
          {Methanococcus jannaschii [TaxId: 2190]}
          Length = 186

 Score = 24.7 bits (53), Expect = 3.9
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 10 NLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDDISVPSKDNN 69
           +  + + SH CT ID+      +  I     +              D     +P+ D  
Sbjct: 31 IVSEIIMGSHLCTHIDYPKHVGLENRIPFKDGII---KGKGYCISLDDFPGNKLPACDIL 87

Query: 70 AIRMGIIGAW 79
           I  G    W
Sbjct: 88 LIYTGFSKYW 97


>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15
           [TaxId: 1409]}
          Length = 197

 Score = 23.6 bits (51), Expect = 7.8
 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 10/42 (23%)

Query: 118 WNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVI 159
           W  + ED+  LK+     I            G+     DKV 
Sbjct: 78  WEDVGEDALTLKSSGTVNIS----------GGAAYKAYDKVF 109


>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor,
           FtsY {Thermotoga maritima [TaxId: 2336]}
          Length = 81

 Score = 23.5 bits (51), Expect = 7.9
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 96  RFKKNFRGTARSCHGRLASLAAWNIIDEDSFE 127
             KK  + T  +  GR+  L     +D+++ E
Sbjct: 6   FLKKGLQKTKETFFGRVVKLLKGKKLDDETRE 37


>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 118

 Score = 23.7 bits (51), Expect = 7.9
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 73  MGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNIIDEDSFELKNKS 132
            G +G  +++      ++  TL     N               A+ +   E  F L++  
Sbjct: 36  RGEVGKLRIAKTQGRTEVSFTLNEDLANIHDI-------GGKPASVSAPREHPFVLQSVG 88

Query: 133 GQTIIVF--YKTAEQSFEG 149
           GQT+ VF    + + S EG
Sbjct: 89  GQTLTVFTESSSDKLSLEG 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 638,178
Number of extensions: 29027
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)