RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus str. psy62] (162 letters) >d2b0aa1 c.8.8.1 (A:1-186) Hypothetical protein MJ0783 {Methanococcus jannaschii [TaxId: 2190]} Length = 186 Score = 24.7 bits (53), Expect = 3.9 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 3/70 (4%) Query: 10 NLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDDISVPSKDNN 69 + + + SH CT ID+ + I + D +P+ D Sbjct: 31 IVSEIIMGSHLCTHIDYPKHVGLENRIPFKDGII---KGKGYCISLDDFPGNKLPACDIL 87 Query: 70 AIRMGIIGAW 79 I G W Sbjct: 88 LIYTGFSKYW 97 >d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Length = 197 Score = 23.6 bits (51), Expect = 7.8 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 10/42 (23%) Query: 118 WNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVI 159 W + ED+ LK+ I G+ DKV Sbjct: 78 WEDVGEDALTLKSSGTVNIS----------GGAAYKAYDKVF 109 >d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]} Length = 81 Score = 23.5 bits (51), Expect = 7.9 Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 96 RFKKNFRGTARSCHGRLASLAAWNIIDEDSFE 127 KK + T + GR+ L +D+++ E Sbjct: 6 FLKKGLQKTKETFFGRVVKLLKGKKLDDETRE 37 >d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Score = 23.7 bits (51), Expect = 7.9 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 73 MGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNIIDEDSFELKNKS 132 G +G +++ ++ TL N A+ + E F L++ Sbjct: 36 RGEVGKLRIAKTQGRTEVSFTLNEDLANIHDI-------GGKPASVSAPREHPFVLQSVG 88 Query: 133 GQTIIVF--YKTAEQSFEG 149 GQT+ VF + + S EG Sbjct: 89 GQTLTVFTESSSDKLSLEG 107 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.139 0.417 Gapped Lambda K H 0.267 0.0542 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 638,178 Number of extensions: 29027 Number of successful extensions: 61 Number of sequences better than 10.0: 1 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 11 Length of query: 162 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 83 Effective length of database: 1,322,926 Effective search space: 109802858 Effective search space used: 109802858 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.1 bits)