BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus str. psy62] (162 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus str. psy62] Length = 162 Score = 337 bits (863), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60 MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD Sbjct: 1 MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60 Query: 61 ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI 120 ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI Sbjct: 61 ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI 120 Query: 121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR 162 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR Sbjct: 121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR 162 >537021.9.peg.888_1 Length = 217 Score = 24.3 bits (51), Expect = 1.1, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 125 SFELKNKSGQTIIVFYKTAEQSF 147 + E+K SGQ+II F+K A F Sbjct: 84 ALEIKLVSGQSIIEFWKQAPNPF 106 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 21.6 bits (44), Expect = 8.4, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 8/38 (21%) Query: 110 GRLASLAAWNIIDEDS--------FELKNKSGQTIIVF 139 G+ S AWN I EDS F K G +I +F Sbjct: 22 GKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLF 59 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 21.2 bits (43), Expect = 8.9, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 139 FYKTAEQSFEGSFQGESDKV 158 FYK FE + QG DK+ Sbjct: 483 FYKDNLSEFESNLQGNIDKL 502 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 21.2 bits (43), Expect = 9.6, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 7 ILLNLYMLTLFSHGCTQIDFGN 28 I+L+ LFSHGC + N Sbjct: 157 IILSRLFAALFSHGCIIVMTSN 178 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.139 0.417 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,227 Number of Sequences: 1233 Number of extensions: 4086 Number of successful extensions: 9 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 6 length of query: 162 length of database: 328,796 effective HSP length: 67 effective length of query: 95 effective length of database: 246,185 effective search space: 23387575 effective search space used: 23387575 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 35 (18.1 bits)