BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein
omp19 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 162

 Score =  337 bits (863), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60
           MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD
Sbjct: 1   MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60

Query: 61  ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI 120
           ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI
Sbjct: 61  ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI 120

Query: 121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR 162
           IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR
Sbjct: 121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR 162


>537021.9.peg.888_1 
          Length = 217

 Score = 24.3 bits (51), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 125 SFELKNKSGQTIIVFYKTAEQSF 147
           + E+K  SGQ+II F+K A   F
Sbjct: 84  ALEIKLVSGQSIIEFWKQAPNPF 106


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 21.6 bits (44), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 8/38 (21%)

Query: 110 GRLASLAAWNIIDEDS--------FELKNKSGQTIIVF 139
           G+  S  AWN I EDS        F    K G +I +F
Sbjct: 22  GKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLF 59


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 21.2 bits (43), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 139 FYKTAEQSFEGSFQGESDKV 158
           FYK     FE + QG  DK+
Sbjct: 483 FYKDNLSEFESNLQGNIDKL 502


>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 404

 Score = 21.2 bits (43), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 7   ILLNLYMLTLFSHGCTQIDFGN 28
           I+L+     LFSHGC  +   N
Sbjct: 157 IILSRLFAALFSHGCIIVMTSN 178


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.139    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,227
Number of Sequences: 1233
Number of extensions: 4086
Number of successful extensions: 9
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 328,796
effective HSP length: 67
effective length of query: 95
effective length of database: 246,185
effective search space: 23387575
effective search space used: 23387575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)