Query gi|254781046|ref|YP_003065459.1| hypothetical protein CLIBASIA_04740 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 41
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:44:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781046.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3fpf_A Mtnas, putative unchar 13.3 93 0.0027 15.0 1.5 13 3-15 66-78 (102)
2 >2hld_I ATP synthase epsilon c 12.2 68 0.002 15.7 0.5 17 25-41 5-21 (21)
3 >3e38_A Two-domain protein con 11.2 64 0.0019 15.8 0.2 15 22-36 68-82 (103)
4 >1m6y_A S-adenosyl-methyltrans 8.7 1.1E+02 0.0031 14.7 0.5 13 13-25 128-140 (191)
5 >2nyd_A UPF0135 protein SA1388 8.3 1.2E+02 0.0035 14.5 0.6 18 24-41 24-42 (145)
6 >2yyb_A Hypothetical protein T 7.0 1.5E+02 0.0044 14.0 0.6 18 24-41 21-38 (131)
7 >2hye_C Cullin-4A, CUL-4A; bet 6.7 1.9E+02 0.0056 13.5 1.0 20 3-22 146-165 (228)
8 >2r85_A PURP protein PF1517; A 6.4 2.1E+02 0.0062 13.3 1.1 16 13-28 6-21 (57)
9 >1wg8_A Predicted S-adenosylme 5.7 2E+02 0.0058 13.4 0.7 15 12-26 132-146 (192)
10 >2r7k_A 5-formaminoimidazole-4 5.5 2.3E+02 0.0067 13.1 0.9 16 13-28 6-21 (58)
No 1
>>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* (A:1-102)
Probab=13.28 E-value=93 Score=15.02 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 8999999996140
Q gi|254781046|r 3 VDLIRKIFIYMGR 15 (41)
Q Consensus 3 vdlirkifiymgr 15 (41)
..||||.+.|.|-
T Consensus 66 l~lirkfyv~~g~ 78 (102)
T 3fpf_A 66 LSLIRKFYVNLGM 78 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999987566
No 2
>>2hld_I ATP synthase epsilon chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_I (I:41-61)
Probab=12.18 E-value=68 Score=15.66 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 34001202366100039
Q gi|254781046|r 25 TGFKNGIQFGDTTEITK 41 (41)
Q Consensus 25 tgfkngiqfgdtteitk 41 (41)
|.+|||..-...|.|||
T Consensus 5 tqykngtaaseptpitk 21 (21)
T 2hld_I 5 TQYKNGTAASEPTPITK 21 (21)
T ss_dssp EECBC---CBCCCCEEC
T ss_pred EECCCCCCCCCCCCCCC
T ss_conf 85127865788867889
No 3
>>3e38_A Two-domain protein containing predicted PHP-like metal-dependent phosphoesterase; YP_001300751.1, structural genomics; 2.20A {Bacteroides vulgatus atcc 8482} (A:241-343)
Probab=11.23 E-value=64 Score=15.79 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=11.5
Q ss_pred ECCCCCCCCCCCCCC
Q ss_conf 213340012023661
Q gi|254781046|r 22 HSATGFKNGIQFGDT 36 (41)
Q Consensus 22 hsatgfkngiqfgdt 36 (41)
.-..||+|||.=||.
T Consensus 68 tv~i~f~~gikggd~ 82 (103)
T 3e38_A 68 TVRIGFKQGIKGGDV 82 (103)
T ss_dssp EEEEEECTTCCCCEE
T ss_pred EEEEEECCCCCCCCE
T ss_conf 688740233445410
No 4
>>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} (A:1-123,A:234-301)
Probab=8.69 E-value=1.1e+02 Score=14.72 Aligned_cols=13 Identities=46% Similarity=0.813 Sum_probs=10.3
Q ss_pred HCCEEEEEEECCC
Q ss_conf 1404578982133
Q gi|254781046|r 13 MGRLTIIKFHSAT 25 (41)
Q Consensus 13 mgrltiikfhsat 25 (41)
-|||-+|-|||.-
T Consensus 128 gg~~~~~sf~~~e 140 (191)
T 1m6y_A 128 GGRIVVISFHSLE 140 (191)
T ss_dssp EEEEEEEESSHHH
T ss_pred CCEEEEEEECCHH
T ss_conf 9779999707289
No 5
>>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown function; 2.00A {Staphylococcus aureus subsp} (A:1-107,A:333-370)
Probab=8.33 E-value=1.2e+02 Score=14.48 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCC-CCCCCC
Q ss_conf 334001202366-100039
Q gi|254781046|r 24 ATGFKNGIQFGD-TTEITK 41 (41)
Q Consensus 24 atgfkngiqfgd-tteitk 41 (41)
..+=+||+|+|+ ..|+++
T Consensus 24 ~~~D~~GLqvG~~~~eV~~ 42 (145)
T 2nyd_A 24 ESWDNVGLLIGDEDVEVTG 42 (145)
T ss_dssp CTTCCCEEEESCTTSBCCC
T ss_pred CCCCCCEEEECCCCCCCCE
T ss_conf 7688764686899775187
No 6
>>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function, NPPSFA; 2.60A {Thermus thermophilus HB8} (A:1-102,A:214-242)
Probab=7.02 E-value=1.5e+02 Score=14.00 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 334001202366100039
Q gi|254781046|r 24 ATGFKNGIQFGDTTEITK 41 (41)
Q Consensus 24 atgfkngiqfgdtteitk 41 (41)
...=.+|+|.|+..|++|
T Consensus 21 ~~wD~~GL~ig~~~eV~k 38 (131)
T 2yyb_A 21 QDPSLNGLQVEGKRTVRK 38 (131)
T ss_dssp TCSSCCEEEECCCSBCCC
T ss_pred HCCCCCEEEECCCCCCCE
T ss_conf 245976258779876288
No 7
>>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} (C:1-228)
Probab=6.70 E-value=1.9e+02 Score=13.52 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHCCEEEEEEE
Q ss_conf 89999999961404578982
Q gi|254781046|r 3 VDLIRKIFIYMGRLTIIKFH 22 (41)
Q Consensus 3 vdlirkifiymgrltiikfh 22 (41)
+..|++||.||.|--+.+.+
T Consensus 146 ~~~l~~if~YLDr~yv~~~~ 165 (228)
T 2hye_C 146 MIMIRSIFLFLDRTYVLQNS 165 (228)
T ss_dssp HHHHHHHTHHHHTTTTTSCS
T ss_pred HHHHHHHHHHHCHHHHHCCC
T ss_conf 99999999871415663178
No 8
>>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} (A:120-176)
Probab=6.42 E-value=2.1e+02 Score=13.27 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=12.1
Q ss_pred HCCEEEEEEECCCCCC
Q ss_conf 1404578982133400
Q gi|254781046|r 13 MGRLTIIKFHSATGFK 28 (41)
Q Consensus 13 mgrltiikfhsatgfk 28 (41)
.-|+.|.|++.|.|=+
T Consensus 6 IdrpVIVK~~gAkggR 21 (57)
T 2r85_A 6 IEKPVIVKPHGAKGGK 21 (57)
T ss_dssp CCSCEEEEECC----T
T ss_pred CCCCEEECCCCCCCCC
T ss_conf 5982385144577895
No 9
>>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} (A:1-113,A:207-285)
Probab=5.69 E-value=2e+02 Score=13.42 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=11.8
Q ss_pred HHCCEEEEEEECCCC
Q ss_conf 614045789821334
Q gi|254781046|r 12 YMGRLTIIKFHSATG 26 (41)
Q Consensus 12 ymgrltiikfhsatg 26 (41)
--||+.||.|||...
T Consensus 132 pgG~~~ii~f~s~e~ 146 (192)
T 1wg8_A 132 PGGRLVVIAFHSLED 146 (192)
T ss_dssp EEEEEEEEECSHHHH
T ss_pred CCCEEEEEECCCHHH
T ss_conf 597699996482899
No 10
>>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} (A:144-201)
Probab=5.50 E-value=2.3e+02 Score=13.11 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=12.1
Q ss_pred HCCEEEEEEECCCCCC
Q ss_conf 1404578982133400
Q gi|254781046|r 13 MGRLTIIKFHSATGFK 28 (41)
Q Consensus 13 mgrltiikfhsatgfk 28 (41)
.-|+.|.|++.|.|=+
T Consensus 6 IdrpVIVK~pgAkggR 21 (58)
T 2r7k_A 6 IDGTVIVKFPGARGGR 21 (58)
T ss_dssp CCSCEEEECSCCCC--
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 5659999999863796
Done!