Query gi|254781046|ref|YP_003065459.1| hypothetical protein CLIBASIA_04740 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 41 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:43:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781046.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1wg8_A Predicted S-adenosylmet 18.5 27 0.0011 16.9 0.7 14 12-25 225-238 (285) 2 1m6y_A S-adenosyl-methyltransf 17.8 27 0.0011 16.9 0.5 13 13-25 238-250 (301) 3 3eja_A Protein GH61E; beta san 4.2 1.9E+02 0.008 12.7 0.5 21 12-33 132-152 (208) 4 3bje_A Nucleoside phosphorylas 3.3 3E+02 0.013 11.8 1.8 24 14-37 139-162 (349) 5 1n0w_B Breast cancer type 2 su 3.2 1.2E+02 0.0052 13.6 -1.1 17 16-32 3-19 (35) 6 1l1q_A Adenine phosphoribosylt 3.0 2E+02 0.0084 12.6 -0.3 11 28-38 20-30 (186) 7 1btq_A BAND 3 anion transport 2.7 3.1E+02 0.013 11.7 0.4 11 7-17 5-15 (26) 8 2vtc_A CEL61B, cellulase; hydr 2.6 3.5E+02 0.015 11.5 0.6 21 12-33 174-194 (249) 9 1nmo_A Hypothetical protein YB 2.2 3.6E+02 0.015 11.4 0.1 14 28-41 24-37 (247) 10 3hj2_A Human neutrophil peptid 2.1 2.5E+02 0.01 12.2 -0.7 6 11-16 23-28 (33) No 1 >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 Probab=18.53 E-value=27 Score=16.87 Aligned_cols=14 Identities=50% Similarity=0.698 Sum_probs=11.2 Q ss_pred HHCCEEEEEEECCC Q ss_conf 61404578982133 Q gi|254781046|r 12 YMGRLTIIKFHSAT 25 (41) Q Consensus 12 ymgrltiikfhsat 25 (41) --||+.+|-|||-- T Consensus 225 ~gGrl~VISFHSLE 238 (285) T 1wg8_A 225 PGGRLVVIAFHSLE 238 (285) T ss_dssp EEEEEEEEECSHHH T ss_pred CCCEEEEEECCCHH T ss_conf 79679999717289 No 2 >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* Probab=17.76 E-value=27 Score=16.88 Aligned_cols=13 Identities=46% Similarity=0.813 Sum_probs=10.5 Q ss_pred HCCEEEEEEECCC Q ss_conf 1404578982133 Q gi|254781046|r 13 MGRLTIIKFHSAT 25 (41) Q Consensus 13 mgrltiikfhsat 25 (41) -||+.+|-|||.- T Consensus 238 gGrl~vISfHSLE 250 (301) T 1m6y_A 238 GGRIVVISFHSLE 250 (301) T ss_dssp EEEEEEEESSHHH T ss_pred CCEEEEEECCCHH T ss_conf 9689999638489 No 3 >3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A* Probab=4.21 E-value=1.9e+02 Score=12.74 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=15.2 Q ss_pred HHCCEEEEEEECCCCCCCCCCC Q ss_conf 6140457898213340012023 Q gi|254781046|r 12 YMGRLTIIKFHSATGFKNGIQF 33 (41) Q Consensus 12 ymgrltiikfhsatgfkngiqf 33 (41) |+=|-.||-.|+|.. .+|-|| T Consensus 132 YLlR~E~IALH~A~~-~~gaQf 152 (208) T 3eja_A 132 YLLRAEQIGLHVAQS-VGGAQF 152 (208) T ss_dssp EEEEEEEEECTTTTS-TTCCEE T ss_pred EEEEEEECCCCCCCC-CCCCCC T ss_conf 388763034444566-898732 No 4 >3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural genomics, medical structural genomics of pathogenic protozoa consortium; HET: R1P; 1.44A {Trypanosoma brucei} Probab=3.32 E-value=3e+02 Score=11.77 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=21.4 Q ss_pred CCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 404578982133400120236610 Q gi|254781046|r 14 GRLTIIKFHSATGFKNGIQFGDTT 37 (41) Q Consensus 14 grltiikfhsatgfkngiqfgdtt 37 (41) |.++||..-++-|...+++.||.- T Consensus 139 g~~~IIRiGTaGgl~~~v~vGDiV 162 (349) T 3bje_A 139 STMKIIRLGTCGSPAESVPPLALA 162 (349) T ss_dssp GGCEEEEEEEEEECCTTSCTTCEE T ss_pred CCEEEEEEECCCCCCCCCCCCCEE T ss_conf 861899986167777888889799 No 5 >1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1 Probab=3.24 E-value=1.2e+02 Score=13.64 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=11.8 Q ss_pred EEEEEEECCCCCCCCCC Q ss_conf 45789821334001202 Q gi|254781046|r 16 LTIIKFHSATGFKNGIQ 32 (41) Q Consensus 16 ltiikfhsatgfkngiq 32 (41) .++.-||.|.|-|--|. T Consensus 3 ~~~lgfhtasgkkvki~ 19 (35) T 1n0w_B 3 PTLLGFHTASGKKVKIA 19 (35) T ss_dssp CGGGSCEETTSCBCCCC T ss_pred CCEEEEECCCCCEEHHH T ss_conf 62454441578430138 No 6 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=3.01 E-value=2e+02 Score=12.63 Aligned_cols=11 Identities=36% Similarity=0.752 Sum_probs=4.8 Q ss_pred CCCCCCCCCCC Q ss_conf 01202366100 Q gi|254781046|r 28 KNGIQFGDTTE 38 (41) Q Consensus 28 kngiqfgdtte 38 (41) +.||+|-|.+. T Consensus 20 ~~Gi~F~Di~~ 30 (186) T 1l1q_A 20 TKGIAFKDLSD 30 (186) T ss_dssp STTCCEEECHH T ss_pred CCCCEEEECHH T ss_conf 99941784824 No 7 >1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A Probab=2.71 E-value=3.1e+02 Score=11.71 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=7.6 Q ss_pred HHHHHHHCCEE Q ss_conf 99999614045 Q gi|254781046|r 7 RKIFIYMGRLT 17 (41) Q Consensus 7 rkifiymgrlt 17 (41) .-||||...|. T Consensus 5 avifiyfaals 15 (26) T 1btq_A 5 AVIFIYFAALS 15 (26) T ss_pred EEHHHHHHHCC T ss_conf 30488898629 No 8 >2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina} Probab=2.64 E-value=3.5e+02 Score=11.47 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=13.5 Q ss_pred HHCCEEEEEEECCCCCCCCCCC Q ss_conf 6140457898213340012023 Q gi|254781046|r 12 YMGRLTIIKFHSATGFKNGIQF 33 (41) Q Consensus 12 ymgrltiikfhsatgfkngiqf 33 (41) |+=|-.+|-.|+|... +|-|| T Consensus 174 YLlR~E~iaLH~a~~~-ggaQf 194 (249) T 2vtc_A 174 YVFRHELLAAHGASSA-NGMQN 194 (249) T ss_dssp EEEEEEEEECTTTTST-TCCEE T ss_pred EEEEEEECCCCCCCCC-CCCCC T ss_conf 7998852022345678-86423 No 9 >1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Probab=2.17 E-value=3.6e+02 Score=11.41 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 01202366100039 Q gi|254781046|r 28 KNGIQFGDTTEITK 41 (41) Q Consensus 28 kngiqfgdtteitk 41 (41) .||+|.|+..++.| T Consensus 24 ~~GL~v~~~~~V~k 37 (247) T 1nmo_A 24 PNGLQVEGKETVQK 37 (247) T ss_dssp CCEEEECCCSBCCE T ss_pred CCEEEECCCCCCCE T ss_conf 87238678410698 No 10 >3hj2_A Human neutrophil peptide 1; defensin, antimicrobial, chemotactic, cationic, Cys-rich, covalent dimer, synthetic, antibiotic, antiviral defense; 1.40A {Homo sapiens} Probab=2.13 E-value=2.5e+02 Score=12.17 Aligned_cols=6 Identities=83% Similarity=1.447 Sum_probs=0.0 Q ss_pred HHHCCE Q ss_conf 961404 Q gi|254781046|r 11 IYMGRL 16 (41) Q Consensus 11 iymgrl 16 (41) +|+||+ T Consensus 23 fy~grv 28 (33) T 3hj2_A 23 IYQGRL 28 (33) T ss_dssp EETTEE T ss_pred EECCEE T ss_conf 981568 Done!