RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781046|ref|YP_003065459.1| hypothetical protein CLIBASIA_04740 [Candidatus Liberibacter asiaticus str. psy62] (41 letters) >gnl|CDD|179781 PRK04200, PRK04200, cofactor-independent phosphoglycerate mutase; Provisional. Length = 395 Score = 31.0 bits (71), Expect = 0.071 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Query: 3 VDLIRKIFIYMGRLTIIKFHSATGF 27 VDL++ I IY G L +I+ ATG+ Sbjct: 242 VDLLKGIGIYAG-LDVIEVPGATGY 265 >gnl|CDD|162906 TIGR02535, hyp_Hser_kinase, proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity. Length = 396 Score = 28.9 bits (65), Expect = 0.26 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Query: 3 VDLIRKIFIYMGRLTIIKFHSATGFKN 29 VDL++ I IY G L I+ ATG+ + Sbjct: 243 VDLLKGIGIYAG-LERIEVEGATGYLD 268 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.330 0.145 0.418 Gapped Lambda K H 0.267 0.0679 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 638,281 Number of extensions: 21503 Number of successful extensions: 58 Number of sequences better than 10.0: 1 Number of HSP's gapped: 58 Number of HSP's successfully gapped: 4 Length of query: 41 Length of database: 5,994,473 Length adjustment: 15 Effective length of query: 26 Effective length of database: 5,670,353 Effective search space: 147429178 Effective search space used: 147429178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.1 bits)