HHsearch alignment for GI: 254781047 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=93.91 E-value=0.53 Score=26.42 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=68.1
Q ss_pred CCCCCCE-EEEECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH
Q ss_conf 6668864-998888877289999999985781--11468889999999999999971311----2246655780789999
Q gi|254781047|r 62 KYCSMQG-IYLHGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS 134 (404)
Q Consensus 62 ~~~~~kG-lYL~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~ 134 (404)
T Consensus 534 ~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~--hsvsrLIGaPPGYVGy~eGG~--LTeaV-- 607 (823)
T CHL00095 534 NPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK--HTVSKLIGSPPGYVGYNEGGQ--LTEAV-- 607 (823)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCHHHHCCCCCCCCCCCCCCC--HHHHH--
T ss_conf 899974689987899887799999999997478202588535101554--207674589987667787882--01988--
Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHHHC
Q ss_conf 99613879998423204713588899999999854--------------96899817868677523
Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH--------------GCIIVMTSNFIPENLYK 186 (404)
Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--------------gv~lV~TSN~~P~dLY~ 186 (404)
T Consensus 608 -rr~PysVvLfDEIEKAH---pdV~nilLQ-vlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~ 668 (823)
T CHL00095 608 -RKKPYTVVLFDEIEKAH---PDIFNLLLQ-ILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEK 668 (823)
T ss_pred -HCCCCEEEEECHHHHCC---HHHHHHHHH-HCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHH
T ss_conf -71998699862131138---899998876-51688434899998843103999716505588874