HHsearch alignment for GI: 254781047 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=96.35 E-value=0.0055 Score=39.03 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--
Q ss_conf 688649988888772899999999857811146888999999999999997131122466557807899999961387--
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR-- 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~-- 141 (404)
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-~iSGS~F-----VemfVGvGA-----sR--------VRdLF~qAkk~ 241 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-SISGSDF-----VEMFVGVGA-----SR--------VRDLFEQAKKN 241 (596)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCCCCE-ECCCHHH-----HHHHCCCCC-----HH--------HHHHHHHHHCC
T ss_conf 34565268559998727899998454689835-3034446-----443147883-----88--------89999985515
Q ss_pred ---EEEEEEEEECCCHHHH-------------HHHHHHHHH--HH--CCCEEEEECCCC----HHHHHCCCCCHHHHHH-
Q ss_conf ---9998423204713588-------------899999999--85--496899817868----6775238740566898-
Q gi|254781047|r 142 ---VLCFDEFMITNIADAI-------------ILSRLFAAL--FS--HGCIIVMTSNFI----PENLYKDEINRNVLVS- 196 (404)
Q Consensus 142 ---lLCfDEF~V~DiaDAm-------------il~rl~~~l--f~--~gv~lV~TSN~~----P~dLY~~GLqR~~FlP- 196 (404)
T Consensus 242 aP~IIFIDEiD--AvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 242 APCIIFIDEID--AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred CCCEEEEEHHH--HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCC
T ss_conf 99669876343--3145457788998069999998888520157888754885267874333176528877662554478
Q ss_pred -HHH----HHHHCCEEEECCCCCHHHH
Q ss_conf -999----9985050898047311221
Q gi|254781047|r 197 -FIE----LLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 197 -fI~----~lk~~~~V~~l~~~~DYR~ 218 (404)
T Consensus 320 PDi~gRe~IlkvH~~~~~l~~~V~l~~ 346 (596)
T COG0465 320 PDIKGREQILKVHAKNKPLAEDVDLKK 346 (596)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 515657888788641577776678889