HHsearch alignment for GI: 254781047 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=99.15 E-value=3.1e-09 Score=78.72 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=97.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 886499888887728999999998578111468---88999999999999997131122466557807899999961387
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~-------------~~~~~~l~~~l~~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDE-------------GRLEEKLLRELKKVD 169 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHCC
T ss_conf 588289989999879999999999999-839849998859999999998745-------------526899998875289
Q ss_pred EEEEEEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHC
Q ss_conf 999842320--471358889999999985496899817868677523874056689899999850508980473112211
Q gi|254781047|r 142 VLCFDEFMI--TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRK 219 (404)
Q Consensus 142 lLCfDEF~V--~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~ 219 (404)
T Consensus 170 lLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~-g~s~rl~ 247 (254)
T COG1484 170 LLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLDRILHHSHVIVIK-GESYRLN 247 (254)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEC-CHHHHHH
T ss_conf 899823677668815587999999999973054-20205882788866067511689999998616103761-5167653
Q ss_pred CCC
Q ss_conf 236
Q gi|254781047|r 220 EQS 222 (404)
Q Consensus 220 ~~~ 222 (404)
T Consensus 248 ~~~ 250 (254)
T COG1484 248 VRR 250 (254)
T ss_pred CCC
T ss_conf 022