HHsearch alignment for GI: 254781047 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=95.68 E-value=0.08 Score=31.64 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=61.3
Q ss_pred HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 02468999998537889981898787246389998999999982289828998078978801346765313489989887
Q gi|254781047|r 286 PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365 (404)
Q Consensus 286 ~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL 365 (404)
T Consensus 196 ~~~~~~Fr~~yr~~DvLliDDiqfl~g-k~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l---~~l~-----~rL~SRf 266 (447)
T PRK00149 196 NNAMEEFKEKYRSVDVLLIDDIQFLAG-KEKTQEEFFHTFNALHENNKQIVITSDRPPKEL---EGLE-----DRLRSRF 266 (447)
T ss_pred CCCHHHHHHHHHCCCEEEECHHHHHHC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC---CCCC-----HHHHHHH
T ss_conf 186999999997288543214888605-577999999999999984996899578896765---6511-----7788676
Q ss_pred H-----HHCCHHHHH
Q ss_conf 4-----524278897
Q gi|254781047|r 366 Y-----EMFSAQYIG 375 (404)
Q Consensus 366 ~-----EMqS~~yl~ 375 (404)
T Consensus 267 ~~Gl~~~i~~Pd~e~ 281 (447)
T PRK00149 267 EWGLTVDIEPPDLET 281 (447)
T ss_pred HCCEEEECCCCCHHH
T ss_conf 376265105999999