HHsearch alignment for GI: 254781047 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.94 E-value=4.6e-09 Score=77.57 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=65.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404)
T Consensus 46 ~~l~i~G~~G~GKTHLL~A~~~~~~~~~-~~~~yl~~-~~~~~~~-----------------~~--~~~~l~~~d~l~ID 104 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLPL-AELLDRG-----------------PE--LLDNLEQYELVCID 104 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEH-HHHHHHH-----------------HH--HHHHHHHCCEEEEE
T ss_conf 8389988999988999999999998079-96799789-9987544-----------------99--98624227989893
Q ss_pred EEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 23204--713588899999999854968998178686775
Q gi|254781047|r 147 EFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 147 EF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
T Consensus 105 Di~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l 144 (234)
T PRK05642 105 DLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPREL 144 (234)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 6455468859999999999999983995999578795552