HHsearch alignment for GI: 254781047 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.92  E-value=5.7e-09  Score=77.01  Aligned_cols=90  Identities=20%  Similarity=0.328  Sum_probs=63.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             49988888772899999999857811146888999------999999999997131122466557807899999961387
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
T Consensus        47 ~l~l~G~~G~GKTHLLqA~~~~~~~~~-~~~~yl~~~~~~~~~~~~l--------------------------~~l~~~d   99 (235)
T PRK08084         47 YIYLWGREGAGRSHLLHAACAELSQRG-DAVGYVPLDKRAWFVPEVL--------------------------EGMEQLS   99 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEHHHHHHHHHHHH--------------------------HHHHHCC
T ss_conf             699989999888999999999997079-8579987798665179999--------------------------8764189


Q ss_pred             EEEEEEEEEC--CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH
Q ss_conf             9998423204--7135888999999998549-68998178686775
Q gi|254781047|r  142 VLCFDEFMIT--NIADAIILSRLFAALFSHG-CIIVMTSNFIPENL  184 (404)
Q Consensus       142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL  184 (404)
T Consensus       100 ll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l  145 (235)
T PRK08084        100 LVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQL  145 (235)
T ss_pred             EEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf             8998274554699789999999999999848966999679882430