HHsearch alignment for GI: 254781047 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.92 E-value=5.7e-09 Score=77.01 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=63.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 49988888772899999999857811146888999------999999999997131122466557807899999961387
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
T Consensus 47 ~l~l~G~~G~GKTHLLqA~~~~~~~~~-~~~~yl~~~~~~~~~~~~l--------------------------~~l~~~d 99 (235)
T PRK08084 47 YIYLWGREGAGRSHLLHAACAELSQRG-DAVGYVPLDKRAWFVPEVL--------------------------EGMEQLS 99 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEHHHHHHHHHHHH--------------------------HHHHHCC
T ss_conf 699989999888999999999997079-8579987798665179999--------------------------8764189
Q ss_pred EEEEEEEEEC--CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH
Q ss_conf 9998423204--7135888999999998549-68998178686775
Q gi|254781047|r 142 VLCFDEFMIT--NIADAIILSRLFAALFSHG-CIIVMTSNFIPENL 184 (404)
Q Consensus 142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL 184 (404)
T Consensus 100 ll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l 145 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQL 145 (235)
T ss_pred EEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf 8998274554699789999999999999848966999679882430