HHsearch alignment for GI: 254781047 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=99.52 E-value=2e-12 Score=98.95 Aligned_cols=139 Identities=19% Similarity=0.294 Sum_probs=103.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 68864998888877289999999985781114--6888999999999999997131122466557807899999961387
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
T Consensus 155 ~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s~~-------------d~s~~~~i-~~~k~~~ 220 (306)
T PRK08939 155 EKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNAIS-------------DGSVKEKI-DAVKEAP 220 (306)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHC-------------CCCHHHHH-HHHHCCC
T ss_conf 888778898999998999999999999986992999875999999999864-------------89889999-9984499
Q ss_pred EEEEEEEEECCCHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHH------CCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 9998423204713588---8999999998549689981786867752------387405668989999985050898047
Q gi|254781047|r 142 VLCFDEFMITNIADAI---ILSRLFAALFSHGCIIVMTSNFIPENLY------KDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 142 lLCfDEF~V~DiaDAm---il~rl~~~lf~~gv~lV~TSN~~P~dLY------~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
T Consensus 221 vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~~~~~~~e~~ka~RimeRI~~l~~~v~l~G 300 (306)
T PRK08939 221 VLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQRGDETVKAARIMERIRYLAKEVHLEG 300 (306)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEECC
T ss_conf 89984446542677789989999999999749997997799999999998632699537999999999998573587147
Q ss_pred CCHHH
Q ss_conf 31122
Q gi|254781047|r 213 GQDYR 217 (404)
Q Consensus 213 ~~DYR 217 (404)
T Consensus 301 -~nrR 304 (306)
T PRK08939 301 -KNRR 304 (306)
T ss_pred -CCCC
T ss_conf -7778