HHsearch alignment for GI: 254781047 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=95.44 E-value=0.036 Score=33.85 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=70.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404)
T Consensus 350 ~IlclvGpPGvGKTSl~~sIA~al~r~f-~risl----GGv~De-aeirGHrrTYvgampGrii~~l~~a~~~nPv~llD 423 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKY-VRMAL----GGVRDE-AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLD 423 (784)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEC----CCCCCH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEH
T ss_conf 7799646998772469999999858986-99806----887888-88256433434436838999999748988566500
Q ss_pred EE------EECCCHHHHHHHHHHH---------HH----HH-CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE
Q ss_conf 23------2047135888999999---------99----85-49689981786867752387405668989999985050
Q gi|254781047|r 147 EF------MITNIADAIILSRLFA---------AL----FS-HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE 206 (404)
Q Consensus 147 EF------~V~DiaDAmil~rl~~---------~l----f~-~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~ 206 (404)
T Consensus 424 EiDK~~~~~~Gdp~salL--EvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~-~--ip~------------pLlDRmE 486 (784)
T PRK10787 424 EIDKMSSDMRGDPASALL--EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-N--IPA------------PLLDRME 486 (784)
T ss_pred HHHHHCCCCCCCHHHHHH--HHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCC-C--CCH------------HHHHHEE
T ss_conf 355522455899889999--8459765564000322046452225899732767-7--876------------7763121
Q ss_pred EEECCCCCHHHH
Q ss_conf 898047311221
Q gi|254781047|r 207 IISLDSGQDYRR 218 (404)
Q Consensus 207 V~~l~~~~DYR~ 218 (404)
T Consensus 487 ~i~~~gYt~~eK 498 (784)
T PRK10787 487 VIRLSGYTEDEK 498 (784)
T ss_pred EEEECCCCHHHH
T ss_conf 554116767889