HHsearch alignment for GI: 254781047 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=95.44  E-value=0.036  Score=33.85  Aligned_cols=129  Identities=17%  Similarity=0.194  Sum_probs=70.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD  146 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD  146 (404)
T Consensus       350 ~IlclvGpPGvGKTSl~~sIA~al~r~f-~risl----GGv~De-aeirGHrrTYvgampGrii~~l~~a~~~nPv~llD  423 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGRKY-VRMAL----GGVRDE-AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLD  423 (784)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEC----CCCCCH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEH
T ss_conf             7799646998772469999999858986-99806----887888-88256433434436838999999748988566500


Q ss_pred             EE------EECCCHHHHHHHHHHH---------HH----HH-CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE
Q ss_conf             23------2047135888999999---------99----85-49689981786867752387405668989999985050
Q gi|254781047|r  147 EF------MITNIADAIILSRLFA---------AL----FS-HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE  206 (404)
Q Consensus       147 EF------~V~DiaDAmil~rl~~---------~l----f~-~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~  206 (404)
T Consensus       424 EiDK~~~~~~Gdp~salL--EvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~-~--ip~------------pLlDRmE  486 (784)
T PRK10787        424 EIDKMSSDMRGDPASALL--EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-N--IPA------------PLLDRME  486 (784)
T ss_pred             HHHHHCCCCCCCHHHHHH--HHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCC-C--CCH------------HHHHHEE
T ss_conf             355522455899889999--8459765564000322046452225899732767-7--876------------7763121


Q ss_pred             EEECCCCCHHHH
Q ss_conf             898047311221
Q gi|254781047|r  207 IISLDSGQDYRR  218 (404)
Q Consensus       207 V~~l~~~~DYR~  218 (404)
T Consensus       487 ~i~~~gYt~~eK  498 (784)
T PRK10787        487 VIRLSGYTEDEK  498 (784)
T ss_pred             EEEECCCCHHHH
T ss_conf             554116767889