HHsearch alignment for GI: 254781047 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=97.67 E-value=0.0019 Score=42.00 Aligned_cols=126 Identities=16% Similarity=0.315 Sum_probs=67.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCC-HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 649988888772899999999857-----811-14688899999999999999--7131122466557807899999961
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALV-----PIE-KKCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l-----~~~-~K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404)
T Consensus 208 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~Ldl~~LiAGtkyRGe-------fEeRlk~vi~e~~~ 276 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI----YSLDIGSLLAGTKYRGD-------FEKRFKALLKQLEQ 276 (758)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf 89602169998699999999999973899765589889----98458778616864154-------99999999999985
Q ss_pred CC-CEEEEEEEEEC-CC----HHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 38-79998423204-71----35888999999998549-68998178686775238740566898999998505089804
Q gi|254781047|r 139 ES-RVLCFDEFMIT-NI----ADAIILSRLFAALFSHG-CIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 139 ~~-~lLCfDEF~V~-Di----aDAmil~rl~~~lf~~g-v~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
T Consensus 277 ~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaT-T~-~E-Yrk~iekD~------AL~RRFq~V~V~ 347 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST-TY-QE-FSNIFEKDR------ALARRFQKIDIT 347 (758)
T ss_pred CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CH-HH-HHHCCCCCH------HHHHCCCEEECC
T ss_conf 7985999804344226887677764678874578746972399943-77-99-875032147------888428265318
Q ss_pred C
Q ss_conf 7
Q gi|254781047|r 212 S 212 (404)
Q Consensus 212 ~ 212 (404)
T Consensus 348 E 348 (758)
T PRK11034 348 E 348 (758)
T ss_pred C
T ss_conf 9