HHsearch alignment for GI: 254781047 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=95.40 E-value=0.023 Score=35.05 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=64.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 649988888772899999999857811146--888999999-99999999713112246655780789999996138799
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEFMK-DVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~FM~-~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
T Consensus 30 ~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~~~--~~~~g~l--e-~a~gGTL 104 (325)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ--KRHPGRF--E-RADGGTL 104 (325)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCC--CCCCCHH--H-CCCCCEE
T ss_conf 998988989837999999999658867999778877989977889987277556767753--2468734--3-5689869
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHHHHH
Q ss_conf 984232047135888999999998-------------54968998178686775238740566898
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNVLVS 196 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~FlP 196 (404)
T Consensus 105 ~L~eI~~l~~~---~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~dLy~ 167 (325)
T PRK11608 105 FLDELATAPML---VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (325)
T ss_pred EEECHHHCCHH---HHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf 97374547999---9999999986490885799876656468871332208999983956799985