HHsearch alignment for GI: 254781047 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=98.78 E-value=5.8e-07 Score=64.24 Aligned_cols=139 Identities=13% Similarity=0.141 Sum_probs=87.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~~-G~sVlF~t~-~dLv~~L~~a~~~g--------~~~~k~l~~l-~~~dLLI 168 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTV-PDVMSRLHESYDNG--------QSGEKFLQEL-CKVDLLV 168 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHHHHHHHHHHHCC--------CCHHHHHHHH-HCCCEEE
T ss_conf 88608998999987889999999999987-996999889-99999999999848--------5099999997-3389898
Q ss_pred EEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH-HCCEEEECCCCCHHHHCC
Q ss_conf 8423204--713588899999999854968998178686775238740566898999998-505089804731122112
Q gi|254781047|r 145 FDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE-KKLEIISLDSGQDYRRKE 220 (404)
Q Consensus 145 fDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk-~~~~V~~l~~~~DYR~~~ 220 (404)
T Consensus 169 IDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~--ilgd---ailDRL~~h~~~~i~f~-GeSYRk~i 241 (248)
T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGE---RVMDRMTMNGGRWVNFN-WESWRPNV 241 (248)
T ss_pred EHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHH---HHHHHHHHCCCEEEEEE-CCCCCCCC
T ss_conf 60005788986799999999999985579868975899779988--8759---99999986693499861-73111357