HHsearch alignment for GI: 254781047 and conserved domain: TIGR00362
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=96.26 E-value=0.02 Score=35.45 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 88649988888772899999999857811----14688899999999999999713112246655780789999996138
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404)
T Consensus 180 ~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~ 245 (493)
T TIGR00362 180 AYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNK-------------LDD-FKKKYRSL 245 (493)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHC
T ss_conf 6562477447542156787776434443067732788501467899998752001-------------688-88876311
Q ss_pred CEEEEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----------CCCCC----HHHHHHHHHHHHHC
Q ss_conf 799984232047--135888999999998549689981786867752----------38740----56689899999850
Q gi|254781047|r 141 RVLCFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENLY----------KDEIN----RNVLVSFIELLEKK 204 (404)
Q Consensus 141 ~lLCfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY----------~~GLq----R~~FlPfI~~lk~~ 204 (404)
T Consensus 246 d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~~~g~~~~~~~p~~~~~~~~~~~~ 325 (493)
T TIGR00362 246 DFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRFGWGLTADIEPPDLETRLAILKKK 325 (493)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf 12311104764135203688888888774068527885166620100046777654301410002465235789998865
Q ss_pred CEEEECCCC
Q ss_conf 508980473
Q gi|254781047|r 205 LEIISLDSG 213 (404)
Q Consensus 205 ~~V~~l~~~ 213 (404)
T Consensus 326 ~~~~~~~~p 334 (493)
T TIGR00362 326 AEEDGINLP 334 (493)
T ss_pred HHHCCCCCH
T ss_conf 443035652