HHsearch alignment for GI: 254781047 and conserved domain: TIGR00362

>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=96.26  E-value=0.02  Score=35.45  Aligned_cols=135  Identities=19%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             88649988888772899999999857811----14688899999999999999713112246655780789999996138
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES  140 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~  140 (404)
T Consensus       180 ~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~  245 (493)
T TIGR00362       180 AYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNK-------------LDD-FKKKYRSL  245 (493)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHC
T ss_conf             6562477447542156787776434443067732788501467899998752001-------------688-88876311


Q ss_pred             CEEEEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----------CCCCC----HHHHHHHHHHHHHC
Q ss_conf             799984232047--135888999999998549689981786867752----------38740----56689899999850
Q gi|254781047|r  141 RVLCFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENLY----------KDEIN----RNVLVSFIELLEKK  204 (404)
Q Consensus       141 ~lLCfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY----------~~GLq----R~~FlPfI~~lk~~  204 (404)
T Consensus       246 d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~~~g~~~~~~~p~~~~~~~~~~~~  325 (493)
T TIGR00362       246 DFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRFGWGLTADIEPPDLETRLAILKKK  325 (493)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf             12311104764135203688888888774068527885166620100046777654301410002465235789998865


Q ss_pred             CEEEECCCC
Q ss_conf             508980473
Q gi|254781047|r  205 LEIISLDSG  213 (404)
Q Consensus       205 ~~V~~l~~~  213 (404)
T Consensus       326 ~~~~~~~~p  334 (493)
T TIGR00362       326 AEEDGINLP  334 (493)
T ss_pred             HHHCCCCCH
T ss_conf             443035652